| Contig-U05380-1 |
| Contig ID |
Contig-U05380-1 |
| Contig update |
2001. 8.29 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
255 |
| Chromosome number (1..6, M) |
4 |
| Chromosome length |
5430582 |
| Start point |
5269366 |
| End point |
5269621 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
1 |
| Number of EST |
1 |
| Link to clone list |
U05380 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 7.19 |
| Homology vs DNA |
Query= Contig-U05380-1 (Contig-U05380-1Q) /CSM_Contig/Contig-U05380-1Q.Seq.d
(255 letters)
Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU073625) Dictyostelium discoideum slug cDNA, clone SSH695. 268 9e-68 1
(CR855226) Oryza sativa genomic DNA, chromosome 4, BAC clone... 36 0.29 4
(DU235728) 1098574132091 CHORI-243 Ovis aries genomic clone ... 46 0.63 1
(CP001581) Clostridium botulinum A2 str. Kyoto, complete gen... 46 0.63 1
(CP001083) Clostridium botulinum Ba4 str. 657, complete genome. 46 0.63 1
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 46 0.63 1
(CP000939) Clostridium botulinum B1 str. Okra, complete genome. 46 0.63 1
(CP000728) Clostridium botulinum F str. Langeland, complete ... 46 0.63 1
(CP000727) Clostridium botulinum A str. Hall, complete genome. 46 0.63 1
(CP000726) Clostridium botulinum A str. ATCC 19397, complete... 46 0.63 1
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 46 0.63 1
(EY324539) CAWX9992.rev CAWX Helobdella robusta Primary Earl... 34 1.9 2
(CR532989) Anopheles gambiae EST, clone AGAGN71TR. 44 2.5 1
(BX628532) Anopheles gambiae EST, clone ANGNP1404D11T7. 44 2.5 1
(BM600381) 17000687053817 A.Gam.ad.cDNA.blood1 Anopheles gam... 44 2.5 1
(BM577635) 17000659322446 A.Gam.ad.cDNA.blood1 Anopheles gam... 44 2.5 1
(AL844502) Plasmodium falciparum 3D7 chromosome 3. 34 4.2 2
(AC055833) Homo sapiens chromosome 4 clone RP11-84C13 map 4,... 34 4.7 2
(AC230890) Bos taurus clone CH240-496H24, WORKING DRAFT SEQU... 34 4.8 2
(AC166453) Bos taurus clone CH240-176N7, WORKING DRAFT SEQUE... 34 4.8 2
(AC235305) Glycine max strain Williams 82 clone GM_WBb0067G0... 32 4.8 2
(AC104785) Homo sapiens BAC clone RP11-84C13 from 4, complet... 34 4.9 2
(BX571832) Zebrafish DNA sequence from clone DKEY-256O13 in ... 30 4.9 2
(CZ809243) OC__Ba0183I02.r OC__Ba Oryza coarctata genomic cl... 36 5.1 2
(DC233358) Plasmodium berghei strain ANKA cDNA clone:SG02741... 40 5.3 2
(DC226013) Plasmodium berghei strain ANKA cDNA clone:SG00444... 40 5.4 2
(DC233577) Plasmodium berghei strain ANKA cDNA clone:SG02800... 40 5.7 2
(DC230740) Plasmodium berghei strain ANKA cDNA clone:SG01962... 40 5.8 2
(CZ879743) OC__Ba0281O05.r OC__Ba Oryza coarctata genomic cl... 36 5.8 2
(DC234329) Plasmodium berghei strain ANKA cDNA clone:SG03008... 40 5.9 2
(CZ774873) OC__Ba0133K09.r OC__Ba Oryza coarctata genomic cl... 36 5.9 2
(DC226225) Plasmodium berghei strain ANKA cDNA clone:SG00512... 40 6.1 2
(AC194925) Zea mays chromosome 4 clone CH201-175G13; ZMMBBc0... 42 6.1 3
(DC224920) Plasmodium berghei strain ANKA cDNA clone:SG00124... 40 6.2 2
(BH162423) ENTRX76TF Entamoeba histolytica Sheared DNA Entam... 34 6.3 2
(CZ528278) SRAA-aac54c12.b1 Strongyloides ratti whole genome... 32 6.4 2
(EI324471) GM_WBc0061C01.f GM_WBc Glycine max genomic clone ... 32 6.4 2
(CR322142) mte1-49I24FM1 BAC end, cultivar Jemalong A17 of M... 32 6.4 2
(DC226193) Plasmodium berghei strain ANKA cDNA clone:SG00501... 40 6.7 2
(DC227622) Plasmodium berghei strain ANKA cDNA clone:SG00958... 40 6.7 2
(EY348763) CAWZ16668.rev CAWZ Helobdella robusta Primary Lat... 34 6.9 2
(CZ704225) OC__Ba0021D15.r OC__Ba Oryza coarctata genomic cl... 36 7.0 2
(CZ545464) SRAA-aad62a04.g1 Strongyloides ratti whole genome... 32 7.7 2
(DU070686) 136414 Tomato HindIII BAC Library Solanum lycoper... 40 8.0 2
(EG551312) MM01N21_XP Sugar Beet germination cDNA library Be... 32 8.3 3
(AC232811) Solanum tuberosum chromosome 6 clone RHPOTKEY168D... 38 9.2 3
(CR847523) Zebrafish DNA sequence from clone DKEY-36I3 in li... 42 9.9 1
(BX510955) Zebrafish DNA sequence from clone DKEY-79A15 in l... 42 9.9 1
(BX323847) Zebrafish DNA sequence from clone CH211-95G21 in ... 42 9.9 1
(BX284619) Zebrafish DNA sequence from clone DKEY-251E24 in ... 42 9.9 1
(AL928656) Zebrafish DNA sequence from clone CH211-10G22. 42 9.9 1
(FM995165) Candida castellii complete mitochondrial genome, ... 42 9.9 1
(AM433486) Vitis vinifera contig VV78X158748.2, whole genome... 42 9.9 1
(AM430514) Vitis vinifera contig VV78X021974.4, whole genome... 42 9.9 1
(FB571382) Sequence 249 from Patent EP1865317. 42 9.9 1
(GC699447) Sequence 14692 from patent US 6812339. 42 9.9 1
(GC699446) Sequence 14691 from patent US 6812339. 42 9.9 1
(GC699445) Sequence 14690 from patent US 6812339. 42 9.9 1
(GC697434) Sequence 12679 from patent US 6812339. 42 9.9 1
(GC697433) Sequence 12678 from patent US 6812339. 42 9.9 1
(GC697278) Sequence 12523 from patent US 6812339. 42 9.9 1
(AC090889) Canis lupus familiaris clone RP81-156O18, complet... 42 9.9 1
(AL163171) Human chromosome 14 DNA sequence BAC R-406A9 of l... 42 9.9 1
(AC092747) Homo sapiens 12p BAC RP11-582E3 (Roswell Park Can... 42 9.9 1
(AC084824) Homo sapiens 12 BAC RP11-278C7 (Roswell Park Canc... 42 9.9 1
(AC064871) Homo sapiens BAC clone RP11-598C21 from 2, comple... 42 9.9 1
(AC111210) Rattus norvegicus clone CH230-212J4, *** SEQUENCI... 42 9.9 1
(AC096527) Rattus norvegicus clone CH230-78H3, *** SEQUENCIN... 42 9.9 1
(CU928726) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 9.9 1
(CU611051) Human DNA sequence *** SEQUENCING CANCELLED *** f... 42 9.9 1
(AC069588) Homo sapiens chromosome 14 clone RP11-340E1 map 1... 42 9.9 1
(BX537124) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 42 9.9 1
(AC229825) Monodelphis domestica clone VMRC18-468F17, WORKIN... 42 9.9 1
(AC225287) Monodelphis domestica clone VMRC18-337E3, WORKING... 42 9.9 1
(AC188157) Canis lupus familiaris chromosome 14 clone XX-191... 42 9.9 1
(AC180091) Strongylocentrotus purpuratus clone R3-3002L22, W... 42 9.9 1
(AC023261) Homo sapiens chromosome 12 clone RP11-377L21 map ... 42 9.9 1
(FH415688) CHO_OF4874xf19f1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 9.9 1
(ET685350) CHO_OF354xj15f1.ab1 CHO_OF Nicotiana tabacum geno... 42 9.9 1
(EJ646390) 1092215030833 Global-Ocean-Sampling_GS-30-01-01-1... 42 9.9 1
(EJ645999) 1092214904589 Global-Ocean-Sampling_GS-30-01-01-1... 42 9.9 1
(DE512791) Bombyx mori genomic DNA, Fosmid clone:GBMFno129_c... 42 9.9 1
(DE422360) Bombyx mori genomic DNA, Fosmid clone:GBMFno3_g05... 42 9.9 1
(CE182400) tigr-gss-dog-17000326791200 Dog Library Canis lup... 42 9.9 1
(CC176264) ZMMBBc0298P12r ZMMBBc Zea mays subsp. mays genomi... 42 9.9 1
(EG693746) RCSB618TP Castor bean cDNA library from seeds (12... 42 9.9 1
(DA851639) Homo sapiens cDNA clone PLACE7001391, 5' end, mRN... 42 9.9 1
(DA411914) Homo sapiens cDNA clone BRTHA3019279, 5' end, mRN... 42 9.9 1
(DA114525) Homo sapiens cDNA clone BRACE3033174, 5' end, mRN... 42 9.9 1
(EU859965) Mycoplasma cynos strain H-831 RNA polymerase beta... 42 9.9 1
(DQ219486) Mycoplasma spumans strain ATCC 19526 RNA polymera... 42 9.9 1
(AE016825) Chromobacterium violaceum ATCC 12472, complete ge... 42 9.9 1
>(AU073625) Dictyostelium discoideum slug cDNA, clone SSH695.
Length = 240
Score = 268 bits (135), Expect = 9e-68
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 17 cttcatagttgtacgattactcccttttatatataaatttctcaatacatattattataa 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 cttcatagttgtacgattactcccttttatatataaatttctcaatacatattattataa 76
Query: 77 ttatgagttcgtataatggtaaaactattcaacaatcattagatgataatggtattgttt 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 ttatgagttcgtataatggtaaaactattcaacaatcattagatgataatggtattgttt 136
Query: 137 tatttaggaaaaacg 151
|||||||||||||||
Sbjct: 137 tatttaggaaaaacg 151
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 224,196,080
Number of extensions: 14814300
Number of successful extensions: 4249626
Number of sequences better than 10.0: 99
Length of query: 255
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 232
Effective length of database: 102,190,702,835
Effective search space: 23708243057720
Effective search space used: 23708243057720
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
|
| protein update |
2009. 8. 1 |
| Homology vs Protein |
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
1 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |