>Contig-U05363-1 (Contig-U05363-1Q) /CSM_Contig/Contig-U05363-1Q.Seq.d
TTTAAAAGTTTTTGGTTAAAAATAATAATAATAATAAAGATATATTAAAA
TGGATCCACATTCAGAACATGAACAAAAAGTTGTACCATTAGGTGGTAAA
GAAATTCCAACTGGTATGGAATCACATGCAGATTGGATGAATCATCCAAT
TCAAACAGAAGCAAGTTAAAGAAGATTATGGTGAAGAATATAATGAAACT
GAAAAATTAAGAGAAGAACTTGGTAATGTTAAAAAAGTTGTTACATCAAT
TTGTCAACCAGTTCAAACAATTTACACACTTCAATATATACTTGATTCAG
ATGATCAAACTAGTGTGATAAAAAAGCAATTGAAAAACAAATTTTAGATC
AACAAACTAAAAGAGATCAAATTATTGTTGATTTGAAAAAATTAATTCCA
CTTTTTGAAAAACATGTTGAATATATTTCATACAAAGAAGGTATTGAGGA
AGTAATCAAACAATCTTATAAAAAATTTAATAGCAAAGAAGAAAACTTTG
AATTTGGGTCATTATGTAAAAAAATAACTTCAACCATTTTTAAAGATCAA
AAAAATTTATTAGATAAAATGAAAGCAATTAAAAAAGCAAAAGCAACAAC
ACCTCAATAAAAAATAAAATAGTGTTATTGAAAAA

est1=SSH525E,1,636

lkvfg*k*****ryikmdphseheqkvvplggkeiptgmeshadwmnhpiqteas*rrlw
*ri**n*kikrrtw*c*kscyinlstssnnlhtsiyt*fr*sn*CDKKAIEKQILDQQTK
RDQIIVDLKKLIPLFEKHVEYISYKEGIEEVIKQSYKKFNSKEENFEFGSLCKKITSTIF
KDQKNLLDKMKAIKKAKATTPQ*kik*cy*k

Frame A:
fksfwlkiiiiikiy*ngstfrt*tksctirw*rnsnwygitcrldessnsnrsklkkim
vknimklkn*eknlvmlkkllhqfvnqfkqfthfniyliqmiklv**ksn*ktnfrstn*
krsnyc*fekinstf*ktc*iyfiqrry*gsnqtil*ki**qrrkl*iwvim*knnfnhf
*rskkfir*nesn*ksksnntsiknkivllk


Frame B:
lkvfg*k*****ryikmdphseheqkvvplggkeiptgmeshadwmnhpiqteas*rrlw
*ri**n*kikrrtw*c*kscyinlstssnnlhtsiyt*fr*sn*CDKKAIEKQILDQQTK
RDQIIVDLKKLIPLFEKHVEYISYKEGIEEVIKQSYKKFNSKEENFEFGSLCKKITSTIF
KDQKNLLDKMKAIKKAKATTPQ*kik*cy*k


Frame C:
*kflvknnnnnkdilkwihiqnmnkklyh*vvkkfqlvwnhmqig*iiqfkqkqvkedyg
eeyneteklreelgnvkkvvtsicqpvqtiytlqyildsddqtsvikkqlknkf*inklk
eikllli*kn*fhflknmlnifhtkkvlrk*snnliknliakkktlnlghyvkk*lqpfl
kikkiy*ik*kqlkkqkqqhlnkk*nsviek

Query= Contig-U05363-1 (Contig-U05363-1Q)
/CSM_Contig/Contig-U05363-1Q.Seq.d
         (635 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05363-1 (Contig-U05363-1Q) /CSM_Contig/Conti...   944  0.0
Contig-U12300-1 (Contig-U12300-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U10447-1 (Contig-U10447-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U05910-1 (Contig-U05910-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U05340-1 (Contig-U05340-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U04577-1 (Contig-U04577-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U13554-1 (Contig-U13554-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U13190-1 (Contig-U13190-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U12926-1 (Contig-U12926-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U12759-1 (Contig-U12759-1Q) /CSM_Contig/Conti...    34  0.18

>Contig-U05363-1 (Contig-U05363-1Q) /CSM_Contig/Contig-U05363-1Q.Seq.d
          Length = 635

 Score =  944 bits (476), Expect = 0.0
 Identities = 490/497 (98%)
 Strand = Plus / Plus

                                                                       
Query: 52  ggatccacattcagaacatgaacaaaaagttgtaccattaggtggtaaagaaattccaac 111
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  ggatccacattcagaacatgaacaaaaagttgtaccattaggtggtaaagaaattccaac 111

                                                                       
Query: 112 tggtatggaatcacatgcagattggatgaatcatccaattcaaacagaagcaagttaaag 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 tggtatggaatcacatgcagattggatgaatcatccaattcaaacagaagcaagttaaag 171

                                                                       
Query: 172 aagattatggtgaagaatataatgaaactgaaaaattaagagaagaacttggtaatgtta 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 aagattatggtgaagaatataatgaaactgaaaaattaagagaagaacttggtaatgtta 231

                                                                       
Query: 232 aaaaagttgttacatcaatttgtcaaccagttcaaacaatttacacacttcaatatatac 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 aaaaagttgttacatcaatttgtcaaccagttcaaacaatttacacacttcaatatatac 291

                                                                       
Query: 292 ttgattcagatgatcaaactagtgtgataaaaaagcaattgaaaaacaaattttagatca 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ttgattcagatgatcaaactagtgtgataaaaaagcaattgaaaaacaaattttagatca 351

                                                                       
Query: 352 acaaactaaaagagatcaaattattgttgatttgaaaaaattaattccactttttgaaaa 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 acaaactaaaagagatcaaattattgttgatttgaaaaaattaattccactttttgaaaa 411

                                                                       
Query: 412 acatgttgaatatatttcatacaaagaaggtattgaggaagtaatcaaacaatcttataa 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 acatgttgaatatatttcatacaaagaaggtattgaggaagtaatcaaacaatcttataa 471

                                                                       
Query: 472 aaaatttaatagcaaagaagaaaactttgaatttgggtcattatgtnnnnnnntaacttc 531
           ||||||||||||||||||||||||||||||||||||||||||||||       |||||||
Sbjct: 472 aaaatttaatagcaaagaagaaaactttgaatttgggtcattatgtaaaaaaataacttc 531

                            
Query: 532 aaccatttttaaagatc 548
           |||||||||||||||||
Sbjct: 532 aaccatttttaaagatc 548


 Score = 34.2 bits (17), Expect = 0.18
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 619 atagtgttattgaaaaa 635
           |||||||||||||||||
Sbjct: 619 atagtgttattgaaaaa 635


 Score = 30.2 bits (15), Expect = 2.7
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                         
Query: 1  tttaaaagtttttgg 15
          |||||||||||||||
Sbjct: 1  tttaaaagtttttgg 15


>Contig-U12300-1 (Contig-U12300-1Q) /CSM_Contig/Contig-U12300-1Q.Seq.d
          Length = 3886

 Score = 36.2 bits (18), Expect = 0.044
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 201  gaaaaattaagagaagaa 218
            ||||||||||||||||||
Sbjct: 1963 gaaaaattaagagaagaa 1980


>Contig-U10447-1 (Contig-U10447-1Q) /CSM_Contig/Contig-U10447-1Q.Seq.d
          Length = 1124

 Score = 36.2 bits (18), Expect = 0.044
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 358 taaaagagatcaaattat 375
           ||||||||||||||||||
Sbjct: 881 taaaagagatcaaattat 898


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9770
Number of Sequences: 6905
Number of extensions: 9770
Number of successful extensions: 1083
Number of sequences better than 10.0: 129
length of query: 635
length of database: 5,674,871
effective HSP length: 16
effective length of query: 619
effective length of database: 5,564,391
effective search space: 3444358029
effective search space used: 3444358029
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U05363-1 (Contig-U05363-1Q) /CSM_Contig/Contig-U05363-1Q.Seq.d
         (635 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU038292) Dictyostelium discoideum slug cDNA, clone SSH525.      402   0.0    3
(AU073550) Dictyostelium discoideum slug cDNA, clone SSH525.      222   5e-96  3
(EL936697) cavy_001073 cavy eyeball cDNA Library Cavia porce...    52   0.027  1
(AC090733) Homo sapiens chromosome 8, clone RP11-108D15, com...    42   0.041  3
(EJ321476) 1095403377046 Global-Ocean-Sampling_GS-27-01-01-1...    50   0.11   1
(BE223824) kp83g12.y1 TBN95TM-SSFH Strongyloides stercoralis...    28   0.13   4
(AC021947) Homo sapiens clone RP11-271F11, WORKING DRAFT SEQ...    48   0.13   2
(BE580982) kp83g12.y2 TBN95TM-SSFH Strongyloides stercoralis...    28   0.21   4
(AC006844) Caenorhabditis elegans clone Y108G3Y, *** SEQUENC...    38   0.22   8
(AC106698) Rattus norvegicus chromosome 18 clone CH230-60H3,...    36   0.22   2
(AC105861) Rattus norvegicus clone CH230-97F3, *** SEQUENCIN...    36   0.24   2
(AC128921) Rattus norvegicus clone CH230-345B16, WORKING DRA...    36   0.24   2
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    36   0.27   12
(CP000049) Borrelia turicatae 91E135, complete genome.             38   0.33   13
(CR382121) Kluyveromyces lactis strain NRRL Y-1140 chromosom...    48   0.42   1
(AL391117) Human DNA sequence from clone RP11-103B9 on chrom...    48   0.42   1
(AC165862) Bos taurus clone CH240-173O21, WORKING DRAFT SEQU...    48   0.42   1
(EJ693118) 1092956009582 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.42   1
(AL426938) clone BA0AB016A06 of library BA0AB from strain CL...    48   0.42   1
(BQ835049) Po_ad_06F03_TEXF1 Psoroptes ovis mixed Psoroptes ...    48   0.42   1
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         38   0.43   5
(BU390709) 603804280F1 CSEQCHN57 Gallus gallus cDNA clone Ch...    42   0.90   2
(AC024153) Homo sapiens 12 BAC RP13-359K18 (Roswell Park Can...    38   1.2    7
(BM027053) GIT0000320 Root-induced cDNA library from Glomus ...    36   1.2    2
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    38   1.3    6
(CU468362) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   1.3    6
(EK530674) 1095516007789 Global-Ocean-Sampling_GS-32-01-01-1...    32   1.4    3
(AE017308) Mycoplasma mobile 163K complete genome.                 32   1.6    14
(AM285100) Human immunodeficiency virus type 1 partial env g...    46   1.7    1
(CU302345) Medicago truncatula chromosome 5 clone mth2-106f5...    46   1.7    1
(AC010884) Homo sapiens BAC clone RP11-350B7 from 2, complet...    46   1.7    1
(AC230669) Bos taurus clone CH240-502C16, WORKING DRAFT SEQU...    46   1.7    1
(AC230441) Bos taurus clone CH240-508I12, WORKING DRAFT SEQU...    46   1.7    1
(AC222467) Bos taurus clone CH240-419A10, WORKING DRAFT SEQU...    46   1.7    1
(AC170246) Bos taurus clone CH240-217C9, WORKING DRAFT SEQUE...    46   1.7    1
(EJ130753) 1092343485320 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.7    1
(DE570873) Bombyx mori genomic DNA, Fosmid clone:GBMFno216_a...    46   1.7    1
(CU263221) Equus caballus GSS, BAC clone CH241-413H5, SP6 en...    46   1.7    1
(AU278576) Bos taurus cDNA clone:placenta0789, 3' end, expre...    46   1.7    1
(AU234175) Bos taurus cDNA clone:Cln789, 3' end, expressed i...    46   1.7    1
(CO882646) BovGen_10971 normal cattle brain Bos taurus cDNA ...    46   1.7    1
(EX453676) Ovary7_C8 Bat star ovary Patiria miniata cDNA, mR...    46   1.7    1
(AW307857) 1349 MARC 4BOV Bos taurus cDNA 5', mRNA sequence.       46   1.7    1
(CP001047) Mycoplasma arthritidis 158L3-1, complete genome.        46   1.7    1
(AL596165) Listeria innocua Clip11262 complete genome, segme...    34   2.0    8
(AC006478) Homo sapiens PAC clone RP5-847G17 from 7, complet...    36   2.3    4
(EL521069) EST_omor_eva_222 omoreva mixed_tissue Osmerus mor...    38   2.4    2
(AE005176) Lactococcus lactis subsp. lactis Il1403, complete...    34   2.7    2
(AF303741) Chilo iridescent virus complete genome.                 36   3.2    5
(EL523361) EST_omor_eva_2514 omoreva mixed_tissue Osmerus mo...    38   3.3    2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    34   3.5    6
(AP008202) Lotus japonicus genomic DNA, chromosome 5, clone:...    42   4.2    2
(AC170888) Mus musculus chromosome 12 clone RP24-72M20, WORK...    40   4.3    4
(AG295412) Mus musculus molossinus DNA, clone:MSMg01-071K24....    32   4.3    2
(EK028778) 1092955390685 Global-Ocean-Sampling_GS-31-01-01-1...    32   4.4    2
(AJ545046) Mycoplasma hominis vmp gene for variable membrane...    34   4.4    4
(AC213421) Populus trichocarpa clone POP033-L19, complete se...    38   5.4    4
(AC040174) Homo sapiens chromosome 16 clone RP11-96H17, comp...    42   5.4    5
(AP006430) Lotus japonicus genomic DNA, chromosome 5, clone:...    42   5.5    2
(AB078675) Human immunodeficiency virus 1 gene for envelope ...    44   6.6    1
(AC124225) Mus musculus chromosome 16, clone RP23-83P23, com...    44   6.6    1
(AC103897) Papio anubis clone RP41-461D5, complete sequence.       44   6.6    1
(AL078640) Human DNA sequence from clone RP11-536P6 on chrom...    44   6.6    1
(AC012055) Homo sapiens chromosome 4, clone RP11-248N22, com...    44   6.6    1
(AC009069) Homo sapiens chromosome 16 clone RP11-314L21, com...    44   6.6    1
(AC157185) Bos taurus clone CH240-64O4, WORKING DRAFT SEQUEN...    44   6.6    1
(AC135764) Homo sapiens clone RP13-833C7, *** SEQUENCING IN ...    44   6.6    1
(AC131609) Rattus norvegicus clone CH230-1J10, *** SEQUENCIN...    44   6.6    1
(AC119336) Rattus norvegicus clone CH230-242E2, WORKING DRAF...    44   6.6    1
(AC118966) Rattus norvegicus clone CH230-482N23, *** SEQUENC...    44   6.6    1
(AC103207) Rattus norvegicus clone CH230-33J14, WORKING DRAF...    44   6.6    1
(AC098255) Rattus norvegicus clone CH230-1G9, *** SEQUENCING...    44   6.6    1
(AC098184) Rattus norvegicus clone CH230-182F19, WORKING DRA...    44   6.6    1
(CU928780) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.6    1
(CU424464) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.6    1
(AC230604) Bos taurus clone CH240-503J20, WORKING DRAFT SEQU...    44   6.6    1
(AC223371) Bos taurus clone CH240-420P4, WORKING DRAFT SEQUE...    44   6.6    1
(AC192667) Chlorocebus aethiops clone CH252-284K1, WORKING D...    44   6.6    1
(AC180527) Strongylocentrotus purpuratus clone R3-3016G05, W...    44   6.6    1
(AC178934) Strongylocentrotus purpuratus clone R3-3115N4, WO...    44   6.6    1
(AC176423) Strongylocentrotus purpuratus clone R3-3043N04, W...    44   6.6    1
(AC174626) Colobus guereza clone CH272-278I17, WORKING DRAFT...    44   6.6    1
(AC174192) Strongylocentrotus purpuratus clone R3-1107N8, WO...    44   6.6    1
(AC171686) Macaca mulatta clone CH250-370B23, WORKING DRAFT ...    44   6.6    1
(AC019601) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   6.6    1
(ER433781) 1092963788464 Global-Ocean-Sampling_GS-35-01-01-1...    44   6.6    1
(EJ565600) 1092959709961 Global-Ocean-Sampling_GS-29-01-01-1...    44   6.6    1
(EI819930) POTHE68TR Solanum tuberosum RHPOTKEY BAC ends Sol...    44   6.6    1
(EH741691) CNMS15903.b1_N15.ab1 CNM(LMS) spotted knapweed Ce...    44   6.6    1
(EB171872) EST006771 injuried spinal cord cDNA library in Ge...    44   6.6    1
(EB169755) EST004654 injuried spinal cord cDNA library in Ge...    44   6.6    1
(DR732249) FGAS078169 Triticum aestivum FGAS: TaLt5 Triticum...    44   6.6    1
(CK840546) UI-R-AF0-yd-a-08-0-UI.s10 UI-R-AF0 Rattus norvegi...    44   6.6    1
(CA510523) UI-R-FJ0-cpu-i-23-0-UI.r1 UI-R-FJ0 Rattus norvegi...    44   6.6    1
(CA503467) UI-R-FJ0-cpu-i-23-0-UI.s1 UI-R-FJ0 Rattus norvegi...    44   6.6    1
(AI710183) UI-R-AF0-yd-a-08-0-UI.s1 UI-R-AF0 Rattus norvegic...    44   6.6    1
(BW422417) Ciona intestinalis cDNA, clone:cima842o05, 3'end,...    44   6.6    1
(BW376177) Ciona intestinalis cDNA, clone:cidg809j06, 3'end,...    44   6.6    1
(BW163919) Ciona intestinalis cDNA, clone:rcigd004f09, 3' en...    44   6.6    1
(BW161761) Ciona intestinalis cDNA, clone:rcigd043l18, 3' en...    44   6.6    1
(BW145303) Ciona intestinalis cDNA, clone:rcign070g08, 3' en...    44   6.6    1
(BW080584) Ciona intestinalis cDNA, clone:rcieg082l11, 3' en...    44   6.6    1
(BF525149) UI-R-AF0-yd-a-08-0-UI.r1 UI-R-AF0 Rattus norvegic...    44   6.6    1
(GO260743) VBL1_22_H06_E001.g1 Normalized cDNA library from ...    44   6.6    1
(FM935839) Brachionus plicatilis EST 5' end, clone sb104P002...    44   6.6    1
(FM000535) Dicentrarchus labrax EST, clone cDN22P0002H13, 5'...    44   6.6    1
(FL488272) 2P0004F24 Dicentrarchus labrax peritoneal exudate...    44   6.6    1
(FK186808) XABT202667.g3 Gateway compatible cien cDNA librar...    44   6.6    1
(FK182991) XABT200321.g1 Gateway compatible cien cDNA librar...    44   6.6    1
(FK133666) XABT170077.g1 Gateway compatible cien cDNA librar...    44   6.6    1
(FF690664) XABT103385.rev Gateway compatible cien cDNA libra...    44   6.6    1
(AW308358) 3304 MARC 1BOV Bos taurus cDNA 5', mRNA sequence.       44   6.6    1
(AW298857) 293 MARC 1BOV Bos taurus cDNA 5', mRNA sequence.        44   6.6    1
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    44   6.6    1
(CP000969) Thermotoga sp. RQ2, complete genome.                    44   6.6    1
(CP000786) Leptospira biflexa serovar Patoc strain 'Patoc 1 ...    44   6.6    1
(CP000777) Leptospira biflexa serovar Patoc strain 'Patoc 1 ...    44   6.6    1
(CP000702) Thermotoga petrophila RKU-1, complete genome.           44   6.6    1
(AM162623) Leptospira biflexa serovar Patoc LEBIa2226 gene f...    44   6.6    1
(AJ969074) Spiroplasma citri plasmid pSci6.                        44   6.6    1
(AJ969071) Spiroplasma citri pSci3 plasmid.                        44   6.6    1
(EE268409) GRAA-aaa55d11.b1 Globodera_rostochiensis_EST Glob...    34   7.0    2
(X97560) S.cerevisiae 32kb DNA fragment of chromosome XII, l...    38   7.0    2
(AC232072) Solanum tuberosum chromosome 1 clone RH089P15, **...    34   7.3    7
(AC184373) Strongylocentrotus purpuratus clone R3-1015C7, WO...    36   7.3    4
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    34   7.4    8
(EJ316820) 1095403301992 Global-Ocean-Sampling_GS-27-01-01-1...    32   7.4    3
(FB596535) Sequence 12258 from Patent WO2004081186.                34   7.5    7
(AC213022) Pongo abelii chromosome 21 clone CH276-204M20, WO...    38   8.1    4
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete...    38   8.3    14
(AL929298) Zebrafish DNA sequence from clone CH211-79E7.           38   8.7    2
(U58752) Caenorhabditis elegans cosmid B0218, complete seque...    38   8.7    3
(DD211169) Assays for Identifying Ubiquitin Agents and for I...    36   9.1    2
(BD407465) UBIQUITIN LIGASE ASSAY.                                 36   9.1    2
(AX282594) Sequence 9 from Patent WO0175145.                       36   9.1    2
(AR811773) Sequence 9 from patent US 7022493.                      36   9.1    2
(AR786126) Sequence 9 from patent US 6979551.                      36   9.1    2
(AR698537) Sequence 9 from patent US 6919184.                      36   9.1    2
(AR568568) Sequence 9 from patent US 6740495.                      36   9.1    2
(AR535411) Sequence 9 from patent US 6737244.                      36   9.1    2
(AF327710) Homo sapiens cullin 5 mRNA, complete cds.               36   9.1    2
(BX276111) Zebrafish DNA sequence from clone CH211-258H7 in ...    38   9.4    2
(DD333477) A method of testing a sensitivity of tumor cells ...    36   9.5    2
(AF017061) Homo sapiens vasopressin-activated calcium mobili...    36   9.5    2

>(AU038292) Dictyostelium discoideum slug cDNA, clone SSH525.
          Length = 479

 Score =  402 bits (203), Expect(3) = 0.0
 Identities = 203/203 (100%)
 Strand = Plus / Plus


Query: 315 gtgataaaaaagcaattgaaaaacaaattttagatcaacaaactaaaagagatcaaatta 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 gtgataaaaaagcaattgaaaaacaaattttagatcaacaaactaaaagagatcaaatta 209


Query: 375 ttgttgatttgaaaaaattaattccactttttgaaaaacatgttgaatatatttcataca 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ttgttgatttgaaaaaattaattccactttttgaaaaacatgttgaatatatttcataca 269


Query: 435 aagaaggtattgaggaagtaatcaaacaatcttataaaaaatttaatagcaaagaagaaa 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aagaaggtattgaggaagtaatcaaacaatcttataaaaaatttaatagcaaagaagaaa 329


Query: 495 actttgaatttgggtcattatgt 517
           |||||||||||||||||||||||
Sbjct: 330 actttgaatttgggtcattatgt 352

 Score =  301 bits (152), Expect(3) = 0.0
 Identities = 152/152 (100%)
 Strand = Plus / Plus


Query: 164 agttaaagaagattatggtgaagaatataatgaaactgaaaaattaagagaagaacttgg 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agttaaagaagattatggtgaagaatataatgaaactgaaaaattaagagaagaacttgg 60


Query: 224 taatgttaaaaaagttgttacatcaatttgtcaaccagttcaaacaatttacacacttca 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taatgttaaaaaagttgttacatcaatttgtcaaccagttcaaacaatttacacacttca 120


Query: 284 atatatacttgattcagatgatcaaactagtg 315
           ||||||||||||||||||||||||||||||||
Sbjct: 121 atatatacttgattcagatgatcaaactagtg 152

 Score = 34.2 bits (17), Expect(3) = 0.0
 Identities = 17/17 (100%)
 Strand = Plus / Plus


Query: 525 taacttcaaccattttt 541
           |||||||||||||||||
Sbjct: 360 taacttcaaccattttt 376

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 828,151,067
Number of extensions: 53096014
Number of successful extensions: 4461262
Number of sequences better than 10.0: 149
Length of query: 635
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 611
Effective length of database: 102,084,959,077
Effective search space: 62373909996047
Effective search space used: 62373909996047
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U05363-1 (Contig-U05363-1Q) /CSM_Contig/Contig-U05363-1Q.Seq.d
         (635 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000860_1834(CP000860|pid:none) Candidatus Desulforudis audaxvi...    42   0.020
AY157938_1(AY157938|pid:none) Caenorhabditis elegans ANC-1 (anc-...    37   0.48
FJ822135_74(FJ822135|pid:none) Lactobacillus phage Lb338-1, comp...    36   0.82
AY170822_1(AY170822|pid:none) Homo sapiens transformation-relate...    34   4.1
L41840_1(L41840|pid:none) Homo sapiens nucleoporin (NUP358) gene...    33   5.3
AY714827_47(AY714827|pid:none) Uncultured archaeon GZfos18F2 clo...    33   5.3
DQ417354_1(DQ417354|pid:none) Clostridium botulinum neurotoxin t...    33   5.3
AY170823_1(AY170823|pid:none) Homo sapiens transformation-relate...    33   5.3
(P49792) RecName: Full=E3 SUMO-protein ligase RanBP2; AltName: F...    33   5.3
D42063_1(D42063|pid:none) Human mRNA for RanBP2 (Ran-binding pro...    33   5.3
DQ333351_91(DQ333351|pid:none) Choristoneura occidentalis granul...    33   5.3
AM910991_370(AM910991|pid:none) Plasmodium knowlesi strain H chr...    33   5.3
CP000675_1838(CP000675|pid:none) Legionella pneumophila str. Cor...    33   6.9
AM910995_343(AM910995|pid:none) Plasmodium knowlesi strain H chr...    33   9.1
CR628337_1724(CR628337|pid:none) Legionella pneumophila str. Len...    33   9.1
AL844505_55(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    33   9.1

>CP000860_1834(CP000860|pid:none) Candidatus Desulforudis
           audaxviator MP104C, complete genome.
          Length = 507

 Score = 41.6 bits (96), Expect = 0.020
 Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
 Frame = +2

Query: 332 EKQILDQQTKRDQIIVDLKKLIPLFEKHVEYISYKEGIEEVIKQSYKKFNSKEENFEFGS 511
           EK I +++ KRD+II  LKKL P  EK  E I   +GI+ +I Q  ++  +  +  E  +
Sbjct: 94  EKAIKEKEEKRDKIIKSLKKLQPRTEKWQEKIDRLKGIKFIIHQKKRRLRNLRQRLE--N 151

Query: 512 LCKKI----------TSTIFKDQKNL 559
           L K +          T  +FK Q NL
Sbjct: 152 LSKDMARGIVRICFGTRKLFKAQHNL 177

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 721,800,178
Number of extensions: 11660410
Number of successful extensions: 34071
Number of sequences better than 10.0: 16
Number of HSP's gapped: 34060
Number of HSP's successfully gapped: 16
Length of query: 211
Length of database: 1,061,185,681
Length adjustment: 123
Effective length of query: 88
Effective length of database: 659,166,577
Effective search space: 58006658776
Effective search space used: 58006658776
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

 psg: 0.51  gvh: 0.19  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U05363-1 is nuc