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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01139-1
Contig ID Contig-U01139-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01139-1 (Contig-U01139-1Q) /CSM_Contig/Contig-U01139-1Q.Seq.d
CAACAGCAACAATAACAACAGCAGTTGTACCAGAATCAACAACACCATCA
TCAATAATAACAGGAACATCATCAACGCAAGATGATTTAATATCACCATA
TATGATATCATTAGTTAGTAAAGATATTAATTCAGATACACTTCAACTTT
TAACAAAAGGTAGTACTGATTTGGTTATTGATCATTGTCAATATTATTTT
GATGGTGAATCAATTAGAAATTTAGGTGAAGCTGAAAAAGAAAAAATTAA
ACAAATCTATACAAAATGGGATACAAATGAAAGTTTAAAAGCAATTTGTT
TTGCTTATAAACCAATTGAATCACAATTTAGAAAATTATTTGTTTCTGGT
AATGTTAATAGTCCACTAGTTGATGTTAGATTTTCACCTTCTGAAGATGA
TTTAAATAATTTAGAATTAAATAATAATAATAATAATAA
Gap no gap
Contig length 439
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3437540
End point 3437101
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U01139
List of clone(s) 

est1=SLB603F,1,440
Translated Amino Acid sequence 
TATITTAVVPESTTPSSIITGTSSTQDDLISPYMISLVSKDINSDTLQLLTKGSTDLVID
HCQYYFDGESIRNLGEAEKEKIKQIYTKWDTNESLKAICFAYKPIESQFRKLFVSGNVNS
PLVDVRFSPSEDDLNNLELNNNNNN
Translated Amino Acid sequence (All Frames) 
Frame A:
qqqq*qqqlyqnqqhhhq**qehhqrkmi*yhhi*yh*lvkiliqihfnf*qkvvliwll
iivniilmvnqlei*vklkkkklnksiqngiqmkv*kqfvllinqlnhnlenylflvmli
vh*lmldfhllkmi*ii*n*iiiiii


Frame B:
nsnnnnssctrinntiinnnrniinar*fnitiydiis**ry*frytstfnkr*y*fgy*
slsilf*w*in*kfr*s*krkn*tnlykmgyk*kfksnlfcl*tn*iti*kiicfw*c**
sts*c*iftf*r*fk*frik******


Frame C:
TATITTAVVPESTTPSSIITGTSSTQDDLISPYMISLVSKDINSDTLQLLTKGSTDLVID
HCQYYFDGESIRNLGEAEKEKIKQIYTKWDTNESLKAICFAYKPIESQFRKLFVSGNVNS
PLVDVRFSPSEDDLNNLELNNNNNN
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01139-1 (Contig-U01139-1Q)
/CSM_Contig/Contig-U01139-1Q.Seq.d
         (439 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01139-1 (Contig-U01139-1Q) /CSM_Contig/Conti...   722  0.0
Contig-U11526-1 (Contig-U11526-1Q) /CSM_Contig/Conti...    46  4e-05
Contig-U11436-1 (Contig-U11436-1Q) /CSM_Contig/Conti...    46  4e-05
Contig-U00464-1 (Contig-U00464-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U11339-1 (Contig-U11339-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U00938-1 (Contig-U00938-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U13820-1 (Contig-U13820-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U11563-1 (Contig-U11563-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U11521-1 (Contig-U11521-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U11905-1 (Contig-U11905-1Q) /CSM_Contig/Conti...    30  2.6

>Contig-U01139-1 (Contig-U01139-1Q) /CSM_Contig/Contig-U01139-1Q.Seq.d
          Length = 439

 Score =  722 bits (364), Expect = 0.0
 Identities = 388/400 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacagcaacaataacaacagcagttgtaccagaatcaacaacaccatcatcaataataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caacagcaacaataacaacagcagttgtaccagaatcaacaacaccatcatcaataataa 60

                                                                       
Query: 61  caggaacatcatcaacgcaagatgatttaatatcaccatatatgatatcattagttagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  caggaacatcatcaacgcaagatgatttaatatcaccatatatgatatcattagttagta 120

                                                                       
Query: 121 aagatattaattcagatacacttcaacttttaacaaaaggtagtactgatttggttattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagatattaattcagatacacttcaacttttaacaaaaggtagtactgatttggttattg 180

                                                                       
Query: 181 atcattgtcaatattattttgatggtgaatcaattagaaatttaggtgaagctgnnnnnn 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 181 atcattgtcaatattattttgatggtgaatcaattagaaatttaggtgaagctgaaaaag 240

                                                                       
Query: 241 nnnnnnttaaacaaatctatacaaaatgggatacaaatgaaagtttaaaagcaatttgtt 300
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaaaattaaacaaatctatacaaaatgggatacaaatgaaagtttaaaagcaatttgtt 300

                                                                       
Query: 301 ttgcttataaaccaattgaatcacaatttagaaaattatttgtttctggtaatgttaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttgcttataaaccaattgaatcacaatttagaaaattatttgtttctggtaatgttaata 360

                                                   
Query: 361 gtccactagttgatgttagattttcaccttctgaagatga 400
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtccactagttgatgttagattttcaccttctgaagatga 400


>Contig-U11526-1 (Contig-U11526-1Q) /CSM_Contig/Contig-U11526-1Q.Seq.d
          Length = 2445

 Score = 46.1 bits (23), Expect = 4e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 1    caacagcaacaataacaacagca 23
            |||||||||||||||||||||||
Sbjct: 1426 caacagcaacaataacaacagca 1448


>Contig-U11436-1 (Contig-U11436-1Q) /CSM_Contig/Contig-U11436-1Q.Seq.d
          Length = 1209

 Score = 46.1 bits (23), Expect = 4e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 1   caacagcaacaataacaacagca 23
           |||||||||||||||||||||||
Sbjct: 513 caacagcaacaataacaacagca 535


 Score = 46.1 bits (23), Expect = 4e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 1   caacagcaacaataacaacagca 23
           |||||||||||||||||||||||
Sbjct: 453 caacagcaacaataacaacagca 475


 Score = 46.1 bits (23), Expect = 4e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 1   caacagcaacaataacaacagca 23
           |||||||||||||||||||||||
Sbjct: 528 caacagcaacaataacaacagca 550


 Score = 38.2 bits (19), Expect = 0.011
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 1   caacagcaacaataacaacagca 23
           |||||||||||||||||| ||||
Sbjct: 543 caacagcaacaataacaatagca 565


 Score = 38.2 bits (19), Expect = 0.011
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 1   caacagcaacaataacaacagca 23
           |||||||||||||||||| ||||
Sbjct: 468 caacagcaacaataacaatagca 490


 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 5   agcaacaataacaacag 21
           |||||||||||||||||
Sbjct: 598 agcaacaataacaacag 614


 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 7   caacaataacaacagca 23
           |||||||||||||||||
Sbjct: 504 caacaataacaacagca 520


 Score = 32.2 bits (16), Expect = 0.66
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 8   aacaataacaacagca 23
           ||||||||||||||||
Sbjct: 445 aacaataacaacagca 460


 Score = 30.2 bits (15), Expect = 2.6
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 5   agcaacaataacaacagca 23
           |||||||||||||| ||||
Sbjct: 583 agcaacaataacaatagca 601


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,757
Number of Sequences: 8361
Number of extensions: 10757
Number of successful extensions: 1472
Number of sequences better than 10.0: 305
length of query: 439
length of database: 7,895,291
effective HSP length: 16
effective length of query: 423
effective length of database: 7,761,515
effective search space: 3283120845
effective search space used: 3283120845
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.23
Homology vs DNA 
Query= Contig-U01139-1 (Contig-U01139-1Q) /CSM_Contig/Contig-U01139-1Q.Seq.d
         (439 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU060819) Dictyostelium discoideum slug cDNA, clone SLB603.      464   0.0    2
(EY303110) CAWX16533.fwd CAWX Helobdella robusta Primary Ear...    38   0.001  2
(AC127636) Rattus norvegicus clone CH230-185C9, *** SEQUENCI...    38   0.012  2
(AC135409) Rattus norvegicus 8 BAC CH230-416D7 (Children's H...    38   0.012  2
(AC114251) Rattus norvegicus clone CH230-343K20, WORKING DRA...    38   0.012  2
(DH538763) Rattus norvegicus DNA, BAC clone: RNB1-042L04, 3'...    38   0.015  2
(DH637668) Rattus norvegicus DNA, BAC clone: RNB1-176A19, 3'...    38   0.015  2
(AC105644) Rattus norvegicus clone CH230-204L12, WORKING DRA...    40   0.044  2
(EB601687) AGENCOURT_56922593 D. grimshawi EST Drosophila gr...    36   0.056  2
(EB609675) AGENCOURT_57295212 D. grimshawi EST Drosophila gr...    36   0.056  2
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    46   0.12   3
(DL341656) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS.       34   0.20   2
(DJ208105) Method for identification of useful proteins deri...    34   0.20   2
(AF525168) Kluyveromyces marxianus strain B4425 Ure2p (URE2)...    34   0.21   2
(AF525169) Kluyveromyces marxianus strain B4425 Ure2p (URE2)...    34   0.21   2
(EB598068) AGENCOURT_55025024 D. mojavensis EST Drosophila m...    38   0.21   2
(FD471136) RDA_7_2e RDA Triticum turgidum subsp. durum cDNA ...    38   0.22   2
(AC157093) Mus musculus 6 BAC RP24-338D12 (Roswell Park Canc...    48   0.28   1
(AC150296) Callithrix jacchus clone CH259-473M18, WORKING DR...    48   0.28   1
(AC137447) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    48   0.28   1
(AC117900) Rattus norvegicus clone CH230-320C16, *** SEQUENC...    48   0.28   1
(AC112283) Rattus norvegicus clone CH230-30K11, *** SEQUENCI...    48   0.28   1
(AC099178) Rattus norvegicus clone CH230-114B1, *** SEQUENCI...    48   0.28   1
(AC093979) Rattus norvegicus clone CH230-11D13, *** SEQUENCI...    48   0.28   1
(EB618797) AGENCOURT_54973365 D. mojavensis EST Drosophila m...    48   0.28   1
(EB598016) AGENCOURT_54968546 D. mojavensis EST Drosophila m...    48   0.28   1
(DV235893) A2FLR66TV Aedes aegypti full length cDNA library,...    48   0.28   1
(FC583044) CAXP1791.fwd CAXP Lottia gigantea from head, foot...    42   0.39   2
(FC579211) CAXP1384.fwd CAXP Lottia gigantea from head, foot...    42   0.42   2
(CR387991) Zebrafish DNA sequence from clone CH211-285C3 in ...    42   0.43   3
(AE014296) Drosophila melanogaster chromosome 3L, complete s...    32   0.44   2
(AC184506) Strongylocentrotus purpuratus clone R3-1105I6, WO...    40   0.50   4
(CP000049) Borrelia turicatae 91E135, complete genome.             34   0.51   9
(U72236) Dictyostelium discoideum ModA (modA) gene, complete...    46   0.56   2
(AC095577) Rattus norvegicus clone CH230-8G24, WORKING DRAFT...    32   0.59   2
(AC128457) Rattus norvegicus clone CH230-85E19, *** SEQUENCI...    32   0.59   2
(AC125294) Rattus norvegicus clone CH230-7I9, *** SEQUENCING...    32   0.60   2
(AC136126) Rattus norvegicus clone CH230-293J14, WORKING DRA...    36   0.60   2
(AC091225) Drosophila melanogaster 3L BAC RP98-34B24 (Roswel...    32   0.60   2
(AC121196) Rattus norvegicus clone CH230-438N17, WORKING DRA...    34   0.61   2
(AC226276) Aotus nancymaae clone CH258-502I9, WORKING DRAFT ...    34   0.61   2
(AC204178) Aotus nancymaae clone CH258-395F23, WORKING DRAFT...    34   0.62   2
(AC017811) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    32   0.65   2
(DT999053) CNB199-E03.y1d-s SHGC-CNB Gasterosteus aculeatus ...    34   0.77   2
(CD457915) Fg04d_01h23_A Fg04_AAFC_ECORC_Fusarium_graminearu...    32   0.78   2
(AC102500) Mus musculus clone RP24-283O18, WORKING DRAFT SEQ...    38   0.79   4
(BH301675) CH230-200I9.TV CHORI-230 Segment 1 Rattus norvegi...    32   0.80   2
(AC111771) Rattus norvegicus clone CH230-163P12, WORKING DRA...    38   0.87   4
(BV484839) S215P61540RH2.T0 Clara Pan troglodytes troglodyte...    46   1.1    1
(AL691419) Mouse DNA sequence from clone RP23-95I4 on chromo...    46   1.1    1
(AC154186) Mus musculus BAC clone RP24-435B3 from chromosome...    46   1.1    1
(AC121805) Mus musculus BAC clone RP23-443L2 from chromosome...    46   1.1    1
(AC101559) Mus musculus chromosome 5, clone RP23-194K16, com...    46   1.1    1
(CT005243) Pan troglodytes chromosome X clone RP43-008I08 ma...    46   1.1    1
(CU329671) Schizosaccharomyces pombe chromosome II.                46   1.1    1
(GC701792) Sequence 17037 from patent US 6812339.                  46   1.1    1
(GC696861) Sequence 12106 from patent US 6812339.                  46   1.1    1
(Z82203) Human DNA sequence from clone RP3-360E18 on chromos...    46   1.1    1
(AC130735) Rattus norvegicus clone CH230-6O8, WORKING DRAFT ...    46   1.1    1
(AC129987) Rattus norvegicus clone CH230-287D12, *** SEQUENC...    46   1.1    1
(AC129698) Rattus norvegicus clone CH230-10O17, *** SEQUENCI...    46   1.1    1
(AC123509) Rattus norvegicus clone CH230-85M17, *** SEQUENCI...    46   1.1    1
(AC121387) Rattus norvegicus clone CH230-179E15, WORKING DRA...    46   1.1    1
(AC120325) Rattus norvegicus clone CH230-26G11, WORKING DRAF...    46   1.1    1
(AC119697) Rattus norvegicus clone CH230-135B13, WORKING DRA...    46   1.1    1
(AC118875) Rattus norvegicus clone CH230-496L9, *** SEQUENCI...    46   1.1    1
(AC116069) Rattus norvegicus clone CH230-209F3, *** SEQUENCI...    46   1.1    1
(AC111913) Rattus norvegicus clone CH230-185F21, WORKING DRA...    46   1.1    1
(AC111787) Rattus norvegicus clone CH230-232P6, *** SEQUENCI...    46   1.1    1
(AC111750) Rattus norvegicus clone CH230-170A2, *** SEQUENCI...    46   1.1    1
(AC110353) Rattus norvegicus clone CH230-195E18, *** SEQUENC...    46   1.1    1
(AC110198) Mus musculus chromosome 14 clone RP24-373K16 map ...    46   1.1    1
(AC096212) Rattus norvegicus clone CH230-23N22, WORKING DRAF...    46   1.1    1
(AC095769) Rattus norvegicus clone CH230-9J10, *** SEQUENCIN...    46   1.1    1
(AC095718) Rattus norvegicus clone CH230-9K14, WORKING DRAFT...    46   1.1    1
(AC095416) Rattus norvegicus clone CH230-7C5, WORKING DRAFT ...    46   1.1    1
(AC094729) Rattus norvegicus clone CH230-5I2, WORKING DRAFT ...    46   1.1    1
(FP236405) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.1    1
(CU467030) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.1    1
(CU464140) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.1    1
(AL158145) Human DNA sequence *** SEQUENCING CANCELLED *** f...    46   1.1    1
(AC222202) Bos taurus clone CH240-412A19, WORKING DRAFT SEQU...    46   1.1    1
(AC184237) Strongylocentrotus purpuratus clone R3-3061A4, WO...    46   1.1    1
(AC184203) Strongylocentrotus purpuratus clone R3-3034D22, W...    46   1.1    1
(AC180937) Strongylocentrotus purpuratus clone R3-3061K18, W...    46   1.1    1
(AZ984099) 2M0265C01R Mouse 10kb plasmid UUGC2M library Mus ...    46   1.1    1
(AZ537978) ENTFM57TR Entamoeba histolytica Sheared DNA Entam...    46   1.1    1
(DE840631) Monosiga ovata DNA, BAC clone: MOBS-020A23_F, 5'end.    46   1.1    1
(EB571671) AGENCOURT_51778924 D. virilis EST Drosophila viri...    46   1.1    1
(AU071592) Dictyostelium discoideum slug cDNA, clone SSB848.       46   1.1    1
(C83861) Dictyostelium discoideum slug cDNA, clone SSA414.         46   1.1    1
(BJ405941) Dictyostelium discoideum cDNA clone:dds33g15, 3' ...    46   1.1    1
(BJ347556) Dictyostelium discoideum cDNA clone:dda27o09, 3' ...    46   1.1    1
(BJ335722) Dictyostelium discoideum cDNA clone:dda51f09, 5' ...    46   1.1    1
(FM166420) Oryzias latipes EST, clone M064--A12_096.               46   1.1    1
(FD322770) CBPN10989.g1 CBPN: Subtracted channel catfish cDN...    46   1.1    1
(CS352592) Sequence 29 from Patent WO2006069812.                   36   1.2    4
(AC002980) Homo sapiens Xp22 BAC 620F15 (Genome Systems BAC ...    36   1.2    4
(FE243130) CAPG7498.fwd CAPG Naegleria gruberi amoeba stage ...    36   1.6    2
(EY302883) CAWX16400.fwd CAWX Helobdella robusta Primary Ear...    36   1.7    2
(EJ000005) 1091118858414 Global-Ocean-Sampling_GS-26-01-01-1...    34   2.0    2
(EU735052) Gadus morhua microsatellite PGmo105 sequence.           40   2.1    2
(AC115154) Rattus norvegicus clone CH230-187N14, WORKING DRA...    34   2.2    2
(AC141205) Rattus norvegicus clone CH230-374I5, WORKING DRAF...    32   2.2    2
(AC079281) Arabidopsis thaliana chromosome 1 BAC F2J7 genomi...    34   2.3    2
(CU856240) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   2.3    3
(BX816858) Arabidopsis thaliana Full-length cDNA Complete se...    34   2.7    2
(AY170377) Arabidopsis thaliana phytochrome and flowering ti...    34   2.8    2
(DN664556) CFW20-G01.y1d-s SHGC-CFW Gasterosteus aculeatus c...    32   2.9    2
(EC963498) WIN085.C21_H23 Cab Sauv seed normalized (WIN08) V...    34   2.9    2
(EC937591) WIN0515.C21_P09 Cab Sauv flower, leaf and root no...    34   2.9    2
(FK714884) pl_053-F9 Ilyanassa (snail) 0-48h Ilyanassa obsol...    32   2.9    2
(CT557368) A BAC library has been constructed from cultivar ...    34   2.9    2
(EY304493) CAWX17709.fwd CAWX Helobdella robusta Primary Ear...    32   2.9    2
(EC969547) WIN092.C21_P18 Cab Sauv pericarp normalized (WIN0...    34   2.9    2
(ET557524) fcg3x.606350e09 C. graminicola genomic sequence G...    34   2.9    2
(DH515231) Rattus norvegicus DNA, BAC clone: RNB1-010K20, 5'...    32   2.9    2
(ET596339) fcg3x.225950m05 C. graminicola genomic sequence G...    34   2.9    2
(FC840016) CBHI8667.rev CBHI Metridium senile tentacle Metri...    32   2.9    2
(FC840017) CBHI8667.fwd CBHI Metridium senile tentacle Metri...    32   2.9    2
(DV288295) NAAHZ10TF Aedes aegypti - Fat Bodies Normalized (...    32   3.0    2
(AV523643) Arabidopsis thaliana cDNA clone:APZL35a03F, 3' end.     34   3.0    2
(DV288296) NAAHZ10TR Aedes aegypti - Fat Bodies Normalized (...    32   3.0    2
(AV542291) Arabidopsis thaliana cDNA clone:RZ181f05F, 3' end.      34   3.0    2
(DT005713) VVG026D09_756341 CabSau Cell Culture (CELu0001) V...    34   3.0    2
(AV523645) Arabidopsis thaliana cDNA clone:APZL35a08F, 3' end.     34   3.0    2
(AV522711) Arabidopsis thaliana cDNA clone:APZL03h11F, 3' end.     34   3.0    2
(FM961790) Glossina morsitans morsitans EST, clone GMsg06b02...    32   3.0    2
(AV808726) Arabidopsis thaliana cDNA clone:RAFL09-56-C08, 3'...    40   3.1    2
(AC015027) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    38   3.2    2
(AC161788) Medicago truncatula clone mth2-105e21, WORKING DR...    38   3.4    3
(AF050085) Drosophila melanogaster neuroglian (nrg) gene, ex...    40   3.7    2
(AC141014) Rattus norvegicus clone CH230-188N1, WORKING DRAF...    38   4.3    2
(CR855273) Zebrafish DNA sequence from clone DKEYP-34E1 in l...    44   4.4    1
(CR388027) Zebrafish DNA sequence from clone DKEY-181O16 in ...    44   4.4    1
(BX571968) Zebrafish DNA sequence from clone DKEY-27C4 in li...    44   4.4    1
(AL929307) Zebrafish DNA sequence from clone CH211-85A24 in ...    44   4.4    1
(BV039684) S212P60467FF5.T0 CZECHII/Ei Mus musculus STS geno...    44   4.4    1
(AL592225) Mouse DNA sequence from clone RP23-278M14 on chro...    44   4.4    1
(AC130202) Mus musculus BAC clone RP24-480M3 from 9, complet...    44   4.4    1
(AM479372) Vitis vinifera contig VV78X163815.7, whole genome...    44   4.4    1
(CQ579783) Sequence 7541 from Patent WO0171042.                    44   4.4    1
(CQ579782) Sequence 7540 from Patent WO0171042.                    44   4.4    1
(BT024206) Drosophila melanogaster RE44980 full insert cDNA.       44   4.4    1
(AF188360) Drosophila melanogaster filamin A (cher) mRNA, co...    44   4.4    1
(AF183178) Drosophila melanogaster filamin isoforms A and B ...    44   4.4    1
(AF174492) Drosophila melanogaster filamin1 mRNA, partial cds.     44   4.4    1
(AE014297) Drosophila melanogaster chromosome 3R, complete s...    44   4.4    1
(AC159435) Trypanosoma brucei chromosome 8 clone RPCI93-29H2...    44   4.4    1
(AC007824) Drosophila melanogaster, chromosome 3R, region 89...    44   4.4    1
(AC007807) Drosophila melanogaster, chromosome 3R, region 89...    44   4.4    1
(AB324433) Drosophila melanogaster DNA, chromosome 3R, 89E13...    44   4.4    1
(AB322927) Drosophila melanogaster DNA, chromosome 3R, 89E13...    44   4.4    1
(AB320211) Drosophila melanogaster DNA, chromosome 3R, 89E13...    44   4.4    1
(AB318436) Drosophila melanogaster DNA, chromosome 3R, 89E13...    44   4.4    1
(AB318228) Drosophila melanogaster DNA, chromosome 3R, 89E13...    44   4.4    1
(AC096159) Rattus norvegicus clone CH230-11D18, *** SEQUENCI...    44   4.4    1
(CU655954) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.4    1
(CU468872) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.4    1
(CU468013) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   4.4    1
(CU464159) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.4    1
(AC224717) Bos taurus clone CH240-477L19, WORKING DRAFT SEQU...    44   4.4    1
(AC222253) Bos taurus clone CH240-413F2, WORKING DRAFT SEQUE...    44   4.4    1
(AC188894) Echinops telfairi clone CH238-79O7, WORKING DRAFT...    44   4.4    1
(AC163118) Bos taurus clone CH240-120F1, WORKING DRAFT SEQUE...    44   4.4    1
(AC013925) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   4.4    1
(BH446207) BOGWX59TF BOGW Brassica oleracea genomic clone BO...    44   4.4    1
(BH432239) BOGOO24TR BOGO Brassica oleracea genomic clone BO...    44   4.4    1
(BH146171) BG02734-5prime Drosophila melanogaster P{GT1} P e...    44   4.4    1
(BH146170) BG02734-3prime Drosophila melanogaster P{GT1} P e...    44   4.4    1
(ET634463) DG05306-5prime P{wHy} element transposon insertio...    44   4.4    1
(AQ073139) EP(3)3715 Drosophila melanogaster EP line Drosoph...    44   4.4    1
(EJ367494) 1092963711081 Global-Ocean-Sampling_GS-28-01-01-1...    44   4.4    1
(EJ145964) 1092343712308 Global-Ocean-Sampling_GS-27-01-01-1...    44   4.4    1
(DX958405) CHORI105-6O20.TV CHORI105.pTARBAC1.3 Trypanosoma ...    44   4.4    1
(CZ511088) GMW2-39F21a.b1 GMW2 Glycine max genomic, genomic ...    44   4.4    1
(CZ467172) c01442-3prime Exelixis piggyBac PB insertions Dro...    44   4.4    1
(BZ427891) BONLY61TF BO_1.6_2_KB_tot Brassica oleracea genom...    44   4.4    1
(BH742621) gu77h12.g1 BoBuds01 Brassica oleracea genomic clo...    44   4.4    1
(EE080106) S2B23689 Buds (VvS2) Vitis vinifera cDNA clone S2...    44   4.4    1
(EB989671) 15469849 ZF42 Danio rerio cDNA clone 4227387, mRN...    44   4.4    1
(CK658454) LP15387.5prime LP Drosophila melanogaster larval-...    44   4.4    1
(CB978885) CAB40006_IVa_Ra_D08 Cabernet Sauvignon Berry - CA...    44   4.4    1
(AI134679) GH12209.5prime GH Drosophila melanogaster head pO...    44   4.4    1
(BJ355752) Dictyostelium discoideum cDNA clone:dda58h06, 3' ...    44   4.4    1
(BJ327348) Dictyostelium discoideum cDNA clone:dda20j03, 5' ...    44   4.4    1
(BJ327293) Dictyostelium discoideum cDNA clone:dda19m19, 5' ...    44   4.4    1
(BI358264) RE44980.5prime RE Drosophila melanogaster normali...    44   4.4    1
(FG088916) CMRC-FF-IH0-acm-o-01-0-CMRC.r1 Ceratitis capitata...    44   4.4    1
(FG079922) UI-FF-IH0-aat-k-01-0-UI.r1 Ceratitis capitata adu...    44   4.4    1
(FG078019) UI-FF-IF0-abt-n-17-0-UI.r1 Ceratitis capitata emb...    44   4.4    1
(FG073407) UI-FF-IF0-abf-d-20-0-UI.r1 Ceratitis capitata emb...    44   4.4    1
(FG070859) UI-FF-IF0-aah-a-12-0-UI.r1 Ceratitis capitata emb...    44   4.4    1
(CP000927) Caulobacter sp. K31, complete genome.                   44   4.4    1
(AC005879) citb_287_c_20, complete sequence.                       40   4.4    2
(BJ336129) Dictyostelium discoideum cDNA clone:dda52h20, 5' ...    36   4.5    2
(BJ395026) Dictyostelium discoideum cDNA clone:dds37k12, 5' ...    36   4.6    2
(AC118977) Rattus norvegicus clone CH230-33N20, WORKING DRAF...    40   5.2    2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    38   5.4    6
(CT027787) Zebrafish DNA sequence from clone CH211-12B16 in ...    40   6.2    2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    32   6.5    7
(AC179314) Strongylocentrotus purpuratus clone R3-1102P16, W...    32   6.6    5
(FG289388) 1108793297216 New World Screwworm Egg 9261 ESTs C...    38   6.9    2
(FG286433) 1108770714983 New World Screwworm Egg 9261 ESTs C...    38   7.4    2
(CU469099) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   7.4    4
(AC110982) Rattus norvegicus clone CH230-126F6, *** SEQUENCI...    32   7.7    2
(AC119003) Rattus norvegicus clone CH230-70I8, WORKING DRAFT...    32   7.8    2
(AC122098) Rattus norvegicus clone CH230-247F3, WORKING DRAF...    32   7.8    2
(AC125978) Rattus norvegicus clone CH230-232B15, *** SEQUENC...    32   7.8    2
(CU468434) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   7.9    2
(AC111861) Rattus norvegicus clone CH230-206A8, WORKING DRAF...    32   7.9    2
(AC120004) Mus musculus chromosome 5, clone RP24-150N15, com...    32   7.9    2
(AC122466) Mus musculus BAC clone RP24-304N8 from chromosome...    32   7.9    2
(AC149590) Mus musculus BAC clone RP23-348L9 from chromosome...    32   7.9    2
(AC109436) Rattus norvegicus clone CH230-220L10, *** SEQUENC...    32   7.9    2
(AC128249) Rattus norvegicus clone CH230-466E2, WORKING DRAF...    32   7.9    2
(CU633528) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   8.0    2
(AC141217) Rattus norvegicus clone CH230-411F22, WORKING DRA...    32   8.0    2
(AC183328) Echinops telfairi clone CH238-162D16, complete se...    32   8.0    2
(AC115584) Dictyostelium discoideum chromosome 2 map complem...    32   8.0    5
(AC179619) Strongylocentrotus purpuratus clone R3-1028I01, W...    32   8.1    2
(BX927393) Zebrafish DNA sequence from clone CH211-231B2 in ...    32   8.1    2
(BX855604) Zebrafish DNA sequence from clone CH211-284P4.          32   8.1    2
(AC152361) Atelerix albiventris clone LB4-280E21, WORKING DR...    32   8.1    2
(AC117080) Dictyostelium discoideum chromosome 2 map complem...    32   8.4    2
(CU104725) Zebrafish DNA sequence from clone CH73-64L15 in l...    32   9.1    2

>(AU060819) Dictyostelium discoideum slug cDNA, clone SLB603.
          Length = 440

 Score =  464 bits (234), Expect(2) = 0.0
 Identities = 234/234 (100%)
 Strand = Plus / Plus


Query: 1   caacagcaacaataacaacagcagttgtaccagaatcaacaacaccatcatcaataataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caacagcaacaataacaacagcagttgtaccagaatcaacaacaccatcatcaataataa 60


Query: 61  caggaacatcatcaacgcaagatgatttaatatcaccatatatgatatcattagttagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  caggaacatcatcaacgcaagatgatttaatatcaccatatatgatatcattagttagta 120


Query: 121 aagatattaattcagatacacttcaacttttaacaaaaggtagtactgatttggttattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aagatattaattcagatacacttcaacttttaacaaaaggtagtactgatttggttattg 180


Query: 181 atcattgtcaatattattttgatggtgaatcaattagaaatttaggtgaagctg 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atcattgtcaatattattttgatggtgaatcaattagaaatttaggtgaagctg 234

 Score =  222 bits (112), Expect(2) = 0.0
 Identities = 112/112 (100%)
 Strand = Plus / Plus


Query: 291 gcaatttgttttgcttataaaccaattgaatcacaatttagaaaattatttgtttctggt 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gcaatttgttttgcttataaaccaattgaatcacaatttagaaaattatttgtttctggt 350


Query: 351 aatgttaatagtccactagttgatgttagattttcaccttctgaagatgatt 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aatgttaatagtccactagttgatgttagattttcaccttctgaagatgatt 402

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 466,865,559
Number of extensions: 29335352
Number of successful extensions: 2408095
Number of sequences better than 10.0: 232
Length of query: 439
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 416
Effective length of database: 99,442,330,388
Effective search space: 41368009441408
Effective search space used: 41368009441408
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.14
Homology vs Protein 
Query= Contig-U01139-1 (Contig-U01139-1Q) /CSM_Contig/Contig-U01139-1Q.Seq.d
         (439 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM910988_36(AM910988|pid:none) Plasmodium knowlesi strain H chro...    52   8e-06
AE014185_186(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    50   2e-05
BC030865_1(BC030865|pid:none) Mus musculus RIKEN cDNA 2310067B10...    49   4e-05
AK122217_1(AK122217|pid:none) Mus musculus mRNA for mKIAA0195 pr...    49   4e-05
AK047622_1(AK047622|pid:none) Mus musculus adult male corpus str...    49   4e-05
BC068727_1(BC068727|pid:none) Xenopus laevis hypothetical protei...    49   4e-05
BC007157_1(BC007157|pid:none) Mus musculus RIKEN cDNA 2310067B10...    49   4e-05
(Q7TSH8) RecName: Full=Uncharacterized protein KIAA0195;  &AL645...    49   4e-05
AK155233_1(AK155233|pid:none) Mus musculus NOD-derived CD11c +ve...    49   4e-05
(Q12767) RecName: Full=Uncharacterized protein KIAA0195; AltName...    49   7e-05
AK304819_1(AK304819|pid:none) Homo sapiens cDNA FLJ58673 complet...    49   7e-05
AK294526_1(AK294526|pid:none) Homo sapiens cDNA FLJ58177 complet...    49   7e-05
D83779_1(D83779|pid:none) Homo sapiens mRNA for KIAA0195 gene, p...    49   7e-05
AE014134_766(AE014134|pid:none) Drosophila melanogaster chromoso...    44   0.002
T18294(T18294) Ca2+-transporting ATPase (EC 3.6.3.8) - Entamoeba...    42   0.005
CP000727_1476(CP000727|pid:none) Clostridium botulinum A str. Ha...    40   0.019
CP001147_514(CP001147|pid:none) Thermodesulfovibrio yellowstonii...    40   0.019
AM412317_1531(AM412317|pid:none) Clostridium botulinum A str. AT...    40   0.019
CP000673_2180(CP000673|pid:none) Clostridium kluyveri DSM 555, c...    40   0.025
CP000939_1551(CP000939|pid:none) Clostridium botulinum B1 str. O...    40   0.025
CP001581_1655(CP001581|pid:none) Clostridium botulinum A2 str. K...    39   0.043
AL844509_475(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.057
EU432546_1(EU432546|pid:none) Philodina roseola 7 transmembrane ...    39   0.074
CP000922_1774(CP000922|pid:none) Anoxybacillus flavithermus WK1,...    38   0.13
CR932143_1(CR932143|pid:none) Paramecium tetraurelia macronuclea...    38   0.13
FN357520_1(FN357520|pid:none) Schistosoma mansoni genome sequenc...    38   0.13
AM118117_1(AM118117|pid:none) Glomus intraradices partial pmca1 ...    37   0.16
D13984_1(D13984|pid:none) Arabidopsis thaliana ACA1 gene for chl...    37   0.22
AM910994_50(AM910994|pid:none) Plasmodium knowlesi strain H chro...    37   0.22
AM459685_2(AM459685|pid:none) Vitis vinifera contig VV78X183130....    37   0.22
D13983_1(D13983|pid:none) Arabidopsis thaliana mRNA for chloropl...    37   0.22
D16436_1(D16436|pid:none) Synechococcus sp. DNA for PacL, comple...    37   0.28
FB868947_1(FB868947|pid:none) Sequence 88220 from Patent WO20080...    37   0.28
CP001357_2480(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    37   0.28
(P37278) RecName: Full=Probable calcium-transporting ATPase;    ...    37   0.28
AE001437_2108(AE001437|pid:none) Clostridium acetobutylicum ATCC...    36   0.37
CP000806_67(CP000806|pid:none) Cyanothece sp. ATCC 51142 circula...    36   0.37
AY486142_1(AY486142|pid:none) Sterkiella histriomuscorum minichr...    36   0.48
CP001291_5148(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...    36   0.48
AM458967_1(AM458967|pid:none) Vitis vinifera contig VV78X176692....    35   0.63
DQ171938_1(DQ171938|pid:none) Plasmodium chabaudi chabaudi calci...    35   0.82
AJ532679_1(AJ532679|pid:none) Synthetic construct mRNA for Plasm...    35   0.82
AB121052_1(AB121052|pid:none) Plasmodium falciparum serca gene f...    35   0.82
EF564342_1(EF564342|pid:none) Plasmodium falciparum isolate BR67...    35   0.82
EF564343_1(EF564343|pid:none) Plasmodium falciparum isolate BR05...    35   0.82
AM118119_1(AM118119|pid:none) Glomus diaphanum partial pmca gene...    35   0.82
(Q08853) RecName: Full=Calcium-transporting ATPase;          EC=...    35   0.82
AJ622831_1(AJ622831|pid:none) Pichia farinosa acu1 gene for K, P...    35   0.82
AB122148_1(AB122148|pid:none) Plasmodium reichenowi serca gene f...    35   1.1
CP000117_3373(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    35   1.1
AC012375_23(AC012375|pid:none) Genomic sequence for Arabidopsis ...    35   1.1
L08468_1(L08468|pid:none) Arabidopsis thaliana envelope Ca2+-ATP...    35   1.1
CP000903_382(CP000903|pid:none) Bacillus weihenstephanensis KBAB...    35   1.1
A45761(A45761) Ca2+-transporting ATPase (EC 3.6.3.8) - Plasmodiu...    35   1.1
AE008691_1126(AE008691|pid:none) Thermoanaerobacter tengcongensi...    35   1.1
AH2227(AH2227) cation-transporting ATPase all3375 [imported] - N...    34   1.4
AM484192_2(AM484192|pid:none) Vitis vinifera contig VV78X005783....    34   1.4
AM430505_1(AM430505|pid:none) Vitis vinifera contig VV78X094654....    34   1.4
CP000678_895(CP000678|pid:none) Methanobrevibacter smithii ATCC ...    34   1.4
CP000446_2743(CP000446|pid:none) Shewanella sp. MR-4, complete g...    34   1.8
(A1RXT9) RecName: Full=Methionyl-tRNA synthetase;          EC=6....    34   1.8
CR382135_109(CR382135|pid:none) Debaryomyces hansenii strain CBS...    34   1.8
AM263198_834(AM263198|pid:none) Listeria welshimeri serovar 6b s...    34   1.8
CP001287_1173(CP001287|pid:none) Cyanothece sp. PCC 8801, comple...    34   1.8
AF247561_1(AF247561|pid:none) Debaryomyces hansenii ATPase ENA1p...    34   1.8
CP001175_1762(CP001175|pid:none) Listeria monocytogenes HCC23, c...    33   2.4
U58329_1(U58329|pid:none) Opsanus tau sarcoplasmic reticulum Ca2...    33   3.1
CP001251_832(CP001251|pid:none) Dictyoglomus turgidum DSM 6724, ...    33   3.1
AP009179_2183(AP009179|pid:none) Sulfurovum sp. NBC37-1 genomic ...    33   3.1
CP001620_1319(CP001620|pid:none) Corynebacterium kroppenstedtii ...    33   3.1
AY059633_1(AY059633|pid:none) Medicago truncatula type IIB calci...    33   3.1
AM118121_1(AM118121|pid:none) Glomus intraradices partial serca ...    33   4.1
AM118122_1(AM118122|pid:none) Glomus diaphanum partial serca gen...    33   4.1
AE017262_848(AE017262|pid:none) Listeria monocytogenes str. 4b F...    33   4.1
AJ310842_1(AJ310842|pid:none) Hordeum vulgare partial CA3 gene f...    33   4.1
CP000312_1984(CP000312|pid:none) Clostridium perfringens SM101, ...    32   5.3
(Q5UPH1) RecName: Full=Putative ankyrin repeat protein L99;  &AY...    32   5.3
AF067495_1(AF067495|pid:none) Leishmania donovani calcium motive...    32   5.3
BA000039_1223(BA000039|pid:none) Thermosynechococcus elongatus B...    32   5.3
AM502253_222(AM502253|pid:none) Leishmania infantum chromosome 35.     32   5.3
(O64806) RecName: Full=Putative calcium-transporting ATPase 7, p...    32   5.3
AE010300_3708(AE010300|pid:none) Leptospira interrogans serovar ...    32   5.3
AE017194_1257(AE017194|pid:none) Bacillus cereus ATCC 10987, com...    32   5.3
(P13585) RecName: Full=Sarcoplasmic/endoplasmic reticulum calciu...    32   5.3
AE000666_988(AE000666|pid:none) Methanothermobacter thermautotro...    32   5.3
AF145282_1(AF145282|pid:none) Trichomonas vaginalis calcium moti...    32   5.3
CP000087_1206(CP000087|pid:none) Rickettsia bellii RML369-C, com...    32   6.9
CP001176_5188(CP001176|pid:none) Bacillus cereus B4264, complete...    32   6.9
Z78542_8(Z78542|pid:none) Caenorhabditis elegans Cosmid F20D1, c...    32   6.9
CP000923_2175(CP000923|pid:none) Thermoanaerobacter sp. X514, co...    32   6.9
EF121960_1(EF121960|pid:none) Pinctada fucata plasma membrane ca...    32   6.9
U65228_1(U65228|pid:none) Makaira nigricans sarcoplasmic/endopla...    32   9.0
(Q9LIK7) RecName: Full=Putative calcium-transporting ATPase 13, ...    32   9.0
EF066650_82(EF066650|pid:none) Sinorhizobium meliloti strain SM1...    32   9.0
AJ223616_1(AJ223616|pid:none) Caenorhabditis elegans mRNA for ca...    32   9.0
S57726(S57726) PAT1 protein - slime mold (Dictyostelium discoide...    32   9.0
AM494971_199(AM494971|pid:none) Leishmania braziliensis chromoso...    32   9.0
AY438645_1(AY438645|pid:none) Caenorhabditis elegans  membrane C...    32   9.0
U58327_1(U58327|pid:none) Makaira nigricans sarcoplasmic reticul...    32   9.0
(P70083) RecName: Full=Sarcoplasmic/endoplasmic reticulum calciu...    32   9.0

>AM910988_36(AM910988|pid:none) Plasmodium knowlesi strain H
           chromosome 6, complete genome.
          Length = 1202

 Score = 51.6 bits (122), Expect = 8e-06
 Identities = 19/76 (25%), Positives = 45/76 (59%)
 Frame = +3

Query: 99  YMISLVSKDINSDTLQLLTKGSTDLVIDHCQYYFDGESIRNLGEAEKEKIKQIYTKWDTN 278
           ++ + +  +   D   L  KG  D +++ C +Y+DG++I  L   +K+ ++ +  +W  +
Sbjct: 604 FVFAFILYEKKKDKYHLFLKGQLDALVNKCMFYYDGKTIMRLKRKKKKVLRILNMQW-IS 662

Query: 279 ESLKAICFAYKPIESQ 326
             +++ICFAY+P+ ++
Sbjct: 663 SGIESICFAYRPLSTE 678

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 384,233,002
Number of extensions: 5658352
Number of successful extensions: 18008
Number of sequences better than 10.0: 100
Number of HSP's gapped: 17996
Number of HSP's successfully gapped: 100
Length of query: 146
Length of database: 1,051,180,864
Length adjustment: 109
Effective length of query: 37
Effective length of database: 698,395,933
Effective search space: 25840649521
Effective search space used: 25840649521
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for Contig-U01139-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0