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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05346-1
Contig ID Contig-U05346-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U05346-1 (Contig-U05346-1Q) /CSM_Contig/Contig-U05346-1Q.Seq.d
AATTCATCAACCAAAAGAATATCNTAAAGGAAATTCTAATTCAATATCAA
CGTTTAATTGGTATGTCTGAACAAAAAGCAAAATTAAATTATATTCAATT
AGCAAAATCTTTAAAAACTTATGGAT
Gap no gap
Contig length 126
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 97232
End point 97136
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U05346
List of clone(s) 

est1=SSH347F,1,127
Translated Amino Acid sequence 
FINQKNIXKEILIQYQRLIGMSEQKAKLNYIQLAKSLKTYG
Translated Amino Acid sequence (All Frames) 
Frame A:
nsstkris*rkf*fninv*lvclnkkqn*iifn*qnl*klmd


Frame B:
ihqpkeyxkgnsnsistfnwyv*tkskiklysiskifknlw


Frame C:
FINQKNIXKEILIQYQRLIGMSEQKAKLNYIQLAKSLKTYG
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05346-1 (Contig-U05346-1Q)
/CSM_Contig/Contig-U05346-1Q.Seq.d
         (126 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05346-1 (Contig-U05346-1Q) /CSM_Contig/Conti...   244  2e-65
Contig-U14508-1 (Contig-U14508-1Q) /CSM_Contig/Conti...    34  0.032
Contig-U13438-1 (Contig-U13438-1Q) /CSM_Contig/Conti...    34  0.032
Contig-U09968-1 (Contig-U09968-1Q) /CSM_Contig/Conti...    34  0.032
Contig-U04634-1 (Contig-U04634-1Q) /CSM_Contig/Conti...    34  0.032
Contig-U14872-1 (Contig-U14872-1Q) /CSM_Contig/Conti...    32  0.13
Contig-U14738-1 (Contig-U14738-1Q) /CSM_Contig/Conti...    32  0.13
Contig-U13903-1 (Contig-U13903-1Q) /CSM_Contig/Conti...    32  0.13
Contig-U12168-1 (Contig-U12168-1Q) /CSM_Contig/Conti...    32  0.13
Contig-U11357-1 (Contig-U11357-1Q) /CSM_Contig/Conti...    32  0.13

>Contig-U05346-1 (Contig-U05346-1Q) /CSM_Contig/Contig-U05346-1Q.Seq.d
          Length = 126

 Score =  244 bits (123), Expect = 2e-65
 Identities = 126/126 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcatcaaccaaaagaatatcntaaaggaaattctaattcaatatcaacgtttaattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aattcatcaaccaaaagaatatcntaaaggaaattctaattcaatatcaacgtttaattg 60

                                                                       
Query: 61  gtatgtctgaacaaaaagcaaaattaaattatattcaattagcaaaatctttaaaaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtatgtctgaacaaaaagcaaaattaaattatattcaattagcaaaatctttaaaaactt 120

                 
Query: 121 atggat 126
           ||||||
Sbjct: 121 atggat 126


>Contig-U14508-1 (Contig-U14508-1Q) /CSM_Contig/Contig-U14508-1Q.Seq.d
          Length = 1337

 Score = 34.2 bits (17), Expect = 0.032
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                           
Query: 1  aattcatcaaccaaaag 17
          |||||||||||||||||
Sbjct: 23 aattcatcaaccaaaag 39


 Score = 28.2 bits (14), Expect = 2.0
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                          
Query: 113  aaaaacttatggat 126
            ||||||||||||||
Sbjct: 1018 aaaaacttatggat 1031


>Contig-U13438-1 (Contig-U13438-1Q) /CSM_Contig/Contig-U13438-1Q.Seq.d
          Length = 661

 Score = 34.2 bits (17), Expect = 0.032
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 104 aaaatctttaaaaactt 120
           |||||||||||||||||
Sbjct: 13  aaaatctttaaaaactt 29


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2971
Number of Sequences: 6905
Number of extensions: 2971
Number of successful extensions: 1019
Number of sequences better than 10.0: 347
length of query: 126
length of database: 5,674,871
effective HSP length: 14
effective length of query: 112
effective length of database: 5,578,201
effective search space: 624758512
effective search space used: 624758512
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)
dna update 2009. 7.19
Homology vs DNA 
Query= Contig-U05346-1 (Contig-U05346-1Q) /CSM_Contig/Contig-U05346-1Q.Seq.d
         (126 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU073489) Dictyostelium discoideum slug cDNA, clone SSH347.      244   6e-61  1
(BH185447) 027_H_07-21 SmBAC1 Schistosoma mansoni genomic cl...    36   0.12   2
(AL622397) T7 end of clone 027CD04 of library SmBAC1 from st...    36   0.12   2
(AC181923) Strongylocentrotus purpuratus clone R3-1009K23, W...    34   0.16   5
(EF032111) Apostichopus japonicus clone AH162 microsatellite...    46   0.28   1
(ES392197) MUS10-J24.x1d-t SHGC-MUS Mytilus californianus cD...    40   0.40   2
(AC222947) Bos taurus clone CH240-433L15, WORKING DRAFT SEQU...    38   0.64   4
(CU627982) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.65   3
(AC022143) Homo sapiens chromosome 19 clone CTD-2378H7, comp...    40   0.74   2
(ET945753) CHO_OF116xe15r1.ab1 CHO_OF Nicotiana tabacum geno...    28   0.85   3
(AC135840) Sus scrofa clone RP44-300O19, WORKING DRAFT SEQUE...    44   1.1    1
(FP104530) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   1.1    1
(CU469150) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   1.1    1
(CU467582) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   1.1    1
(AC232864) Solanum lycopersicum chromosome 6 clone C06SLm010...    44   1.1    1
(ER600696) 1093016243152 Global-Ocean-Sampling_GS-36-01-01-2...    44   1.1    1
(EJ994653) 1093023077266 Global-Ocean-Sampling_GS-30-02-01-1...    44   1.1    1
(EJ978180) 1093022134291 Global-Ocean-Sampling_GS-30-02-01-1...    44   1.1    1
(EJ246777) 1095337014383 Global-Ocean-Sampling_GS-27-01-01-1...    44   1.1    1
(CC059299) ii21h02.b1 WGS-SbicolorF (DH5a methyl filtered) S...    40   1.2    2
(AE014298) Drosophila melanogaster chromosome X, complete se...    34   1.6    2
(AL616071) T3 end of clone 013CD03 of library SmBAC1 from st...    36   1.8    2
(AB490331) Polypedilum vanderplanki PvTpp, PvTps genes for t...    34   1.9    4
(AC162558) Bos taurus clone CH240-120D11, WORKING DRAFT SEQU...    34   2.2    2
(AC176357) Strongylocentrotus purpuratus clone R3-3053H4, WO...    32   2.2    2
(AC023711) Drosophila melanogaster X BAC RP98-6C4 (Roswell P...    34   2.2    2
(AC170547) Bos taurus clone CH240-228N17, WORKING DRAFT SEQU...    34   2.2    2
(AC023685) Drosophila melanogaster 3L BAC RP98-20N12 (Roswel...    34   2.2    2
(AC104511) Drosophila melanogaster X BAC RP98-39D14 (Roswell...    34   2.2    2
(CU062624) M.truncatula DNA sequence from clone MTH2-77J21 o...    30   2.3    2
(AC014242) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    34   2.3    2
(AK164375) Mus musculus 12 days embryo spinal ganglion cDNA,...    36   2.4    2
(AC172588) Bos taurus clone CH240-254H5, WORKING DRAFT SEQUE...    40   2.5    4
(AC108282) Rattus norvegicus clone CH230-117N22, WORKING DRA...    38   2.6    2
(AB023655) Dictyostelium discoideum talB mRNA for talin homo...    34   2.7    2
(AC182079) Bos taurus clone CH240-330O4, WORKING DRAFT SEQUE...    40   2.7    3
(AX417044) Sequence 4035 from Patent WO0228891.                    34   2.9    5
(CR914796) Sus scrofa BES.                                         32   3.0    2
(CF407916) CH3#051_D01T3 Canine heart normalized cDNA Librar...    32   3.0    2
(FI470876) CH322-54M12.x CHORI-322 Drosophila melanogaster g...    34   3.0    2
(CS468856) Sequence 47 from Patent EP1748080.                      34   3.5    3
(CS468855) Sequence 46 from Patent EP1748080.                      34   3.5    3
(CS419333) Sequence 47 from Patent WO2006094836.                   34   3.5    3
(CS419332) Sequence 46 from Patent WO2006094836.                   34   3.5    3
(AC118977) Rattus norvegicus clone CH230-33N20, WORKING DRAF...    42   3.8    4
(BX957242) Zebrafish DNA sequence from clone CH211-129B17 in...    42   4.4    1
(BX548162) Zebrafish DNA sequence from clone DKEYP-90D11 in ...    42   4.4    1
(CT010519) Mouse DNA sequence from clone RP23-305D10 on chro...    42   4.4    1
(BX004973) Mouse DNA sequence from clone RP24-260G16 on chro...    42   4.4    1
(AC165284) Mus musculus BAC clone RP24-378E14 from chromosom...    42   4.4    1
(AC151574) Mus musculus BAC clone RP23-430A4 from 7, complet...    42   4.4    1
(AC147034) Mus musculus BAC clone RP23-189C2 from chromosome...    42   4.4    1
(AC140370) Mus musculus BAC clone RP24-75N6 from chromosome ...    42   4.4    1
(AC130677) Mus musculus chromosome 7, clone RP24-529F12, com...    42   4.4    1
(AC118642) Mus musculus chromosome 18, clone RP24-112L21, co...    42   4.4    1
(AY251633) Schizosaccharomyces pombe isolate DR2 18S ribosom...    42   4.4    1
(AC216409) Populus trichocarpa clone POP024-J08, complete se...    42   4.4    1
(AC146755) Medicago truncatula clone mth2-15i15, complete se...    42   4.4    1
(AY817610) Zeuxevania splendidula isolate DERV031 16S riboso...    42   4.4    1
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    42   4.4    1
(AC022905) Homo sapiens chromosome 8, clone RP11-656G20, com...    42   4.4    1
(AC007390) Homo sapiens BAC clone RP11-423P10 from 2, comple...    42   4.4    1
(AC134481) Rattus norvegicus clone CH230-270E23, WORKING DRA...    42   4.4    1
(AC116132) Mus musculus chromosome 7 clone RP23-100A3 map 7,...    42   4.4    1
(AC095557) Rattus norvegicus clone CH230-8D4, *** SEQUENCING...    42   4.4    1
(FP089698) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   4.4    1
(FP015976) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   4.4    1
(CU928562) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   4.4    1
(CU861599) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   4.4    1
(CU582971) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   4.4    1
(CU457758) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   4.4    1
(AC230778) Bos taurus clone CH240-499A24, WORKING DRAFT SEQU...    42   4.4    1
(AC183051) Bos taurus clone CH240-78F18, WORKING DRAFT SEQUE...    42   4.4    1
(AC172898) Bos taurus clone CH240-528B6, WORKING DRAFT SEQUE...    42   4.4    1
(FT215717) Rattus norvegicus DNA, BAC clone: RNB2-434E09, 3'...    42   4.4    1
(FT115326) Rattus norvegicus DNA, BAC clone: RNB2-291K24, 3'...    42   4.4    1
(FH903574) CHO_ONF017xg07f1.ab1 CHO_ONF Nicotiana tabacum ge...    42   4.4    1
(FH634000) CHO_OF4581xg21f1.ab1 CHO_OF4 Nicotiana tabacum ge...    42   4.4    1
(FH466886) CHO_OF4960xi10r1.ab1 CHO_OF4 Nicotiana tabacum ge...    42   4.4    1
(ET705626) CHO_OF086xl23r1.ab1 CHO_OF Nicotiana tabacum geno...    42   4.4    1
(EK192717) 1095460025035 Global-Ocean-Sampling_GS-31-01-01-1...    42   4.4    1
(EJ120810) 1092343371954 Global-Ocean-Sampling_GS-27-01-01-1...    42   4.4    1
(DH670832) Rattus norvegicus DNA, BAC clone: RNB1-220J08, 5'...    42   4.4    1
(CT267826) Sus scrofa genomic clone CH242-247J5, genomic sur...    42   4.4    1
(CR247500) Reverse strand read from insert in 5'HPRT inserti...    42   4.4    1
(BZ303200) KD2258.q1 Kluyveromyces delphensis Random Genomic...    42   4.4    1
(BX971108) Reverse strand read from insert in 5'HPRT inserti...    42   4.4    1
(BH576703) BOGBT84TR BOGB Brassica oleracea genomic clone BO...    42   4.4    1
(DV143205) CV03133A1H07.f1 CV03-normalized library Euphorbia...    42   4.4    1
(BG083943) H3094E04-5 NIA Mouse 15K cDNA Clone Set Mus muscu...    42   4.4    1
(GE757759) MUW10-B16.y1d-s SHGC-MUW Mytilus californianus cD...    42   4.4    1
(GE755270) MUW08-O11.y1d-s SHGC-MUW Mytilus californianus cD...    42   4.4    1
(GE754459) MUW07-F12.y1d-s SHGC-MUW Mytilus californianus cD...    42   4.4    1
(GE754425) MUW04-F02.y1d-s SHGC-MUW Mytilus californianus cD...    42   4.4    1
(FF564575) TT1BC67TV Tetrahymena thermophila SB210 cDNA libr...    42   4.4    1
(CP000361) Arcobacter butzleri RM4018, complete genome.            42   4.4    1
(DC221076) Plasmodium berghei strain ANKA cDNA clone:MZ00367...    34   4.5    2
(CE421955) tigr-gss-dog-17000362752646 Dog Library Canis lup...    34   4.9    2
(BM672023) UI-E-EO0-ahz-c-09-0-UI.s1 UI-E-EO0 Homo sapiens c...    36   5.2    2
(EJ824934) 1093017555874 Global-Ocean-Sampling_GS-30-02-01-1...    34   5.2    2
(EI937909) VUH2-82A9TV VUUBBa (VUH2) Vigna unguiculata genom...    38   5.5    2
(EI921198) VUH2-57O9TV VUUBBa (VUH2) Vigna unguiculata genom...    38   5.7    2
(FH529872) CHO_OF4729xm17r1.ab1 CHO_OF4 Nicotiana tabacum ge...    32   5.8    2
(FH135686) CHO_OF3660xc08r1.ab1 CHO_OF3 Nicotiana tabacum ge...    32   5.9    2
(EI935457) VUH2-70C14TV VUUBBa (VUH2) Vigna unguiculata geno...    38   5.9    2
(ET854554) CHO_OF448xe08r1.ab1 CHO_OF Nicotiana tabacum geno...    32   5.9    2
(EK272748) 1095462265068 Global-Ocean-Sampling_GS-31-01-01-1...    32   6.6    2
(AC118661) Homo sapiens chromosome 15 clone RP11-740H24 map ...    36   6.7    2
(BX412321) human full-length cDNA 3-PRIME end of clone CS0DE...    36   6.7    2
(ER459400) 1092963883581 Global-Ocean-Sampling_GS-35-01-01-1...    38   6.9    2
(FN357540) Schistosoma mansoni genome sequence supercontig S...    30   7.4    2
(AC040976) Homo sapiens chromosome 11 clone RP11-223M7 map 1...    38   7.5    3
(AC229710) Medicago truncatula clone mth2-160a14, WORKING DR...    36   7.6    4
(AC122672) Rattus norvegicus clone CH230-100G15, WORKING DRA...    30   7.9    2
(CU467524) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   8.0    2
(CU856191) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   8.0    2
(AC146161) Pan troglodytes BAC clone RP43-1G6 from chromosom...    30   8.0    2
(AC019220) Homo sapiens chromosome 11 clone RP11-527H7, WORK...    30   8.0    2
(AC201526) Strongylocentrotus purpuratus clone R3-3090B18, W...    32   8.1    2
(AC027785) Homo sapiens clone RP11-175K20, WORKING DRAFT SEQ...    30   8.1    2
(AC221584) Bos taurus clone CH240-391L10, WORKING DRAFT SEQU...    32   8.2    2
(AC225741) Tupaia belangeri clone CH275-170M1, WORKING DRAFT...    30   8.2    2
(AC103905) Canis lupus familiaris clone RP81-234H11, WORKING...    30   8.2    2
(AC073903) Homo sapiens BAC clone RP11-564F5 from 7, complet...    30   8.5    2

>(AU073489) Dictyostelium discoideum slug cDNA, clone SSH347.
          Length = 127

 Score =  244 bits (123), Expect = 6e-61
 Identities = 126/126 (100%)
 Strand = Plus / Plus


Query: 1   aattcatcaaccaaaagaatatcntaaaggaaattctaattcaatatcaacgtttaattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aattcatcaaccaaaagaatatcntaaaggaaattctaattcaatatcaacgtttaattg 60


Query: 61  gtatgtctgaacaaaaagcaaaattaaattatattcaattagcaaaatctttaaaaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtatgtctgaacaaaaagcaaaattaaattatattcaattagcaaaatctttaaaaactt 120


Query: 121 atggat 126
           ||||||
Sbjct: 121 atggat 126

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 201,139,426
Number of extensions: 13601542
Number of successful extensions: 4137746
Number of sequences better than 10.0: 124
Length of query: 126
Length of database: 104,622,809,269
Length adjustment: 22
Effective length of query: 104
Effective length of database: 102,296,446,593
Effective search space: 10638830445672
Effective search space used: 10638830445672
X1: 11 (21.8 bits)
S2: 20 (40.1 bits)
protein update 2009. 8. 1
Homology vs Protein 
Query= Contig-U05346-1 (Contig-U05346-1Q) /CSM_Contig/Contig-U05346-1Q.Seq.d
         (126 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54K81) RecName: Full=Talin-B;                                        45   0.001
AB023655_1(AB023655|pid:none) Dictyostelium discoideum talB mRNA...    45   0.001
(P54633) RecName: Full=Talin-A; AltName: Full=Filopodin;               44   0.002
A57036(A57036)talin - slime mold (Dictyostelium discoideum)            44   0.002
(Q9Y4G6) RecName: Full=Talin-2;                                        38   0.098
AK165499_1(AK165499|pid:none) Mus musculus adult male kidney cDN...    38   0.098
AF402000_1(AF402000|pid:none) Homo sapiens talin 2 mRNA, complet...    37   0.22
(P54939) RecName: Full=Talin-1;  &AY150847_1(AY150847|pid:none)        37   0.28
AB028950_1(AB028950|pid:none) Homo sapiens mRNA for KIAA1027 pro...    34   1.8
AF078828_1(AF078828|pid:none) Homo sapiens talin mRNA, complete ...    34   1.8
AL732506_33(AL732506|pid:none) Mouse DNA sequence from clone RP2...    34   1.8
AK122420_1(AK122420|pid:none) Mus musculus mRNA for mKIAA1027 pr...    34   1.8
BC042923_1(BC042923|pid:none) Homo sapiens talin 1, mRNA (cDNA c...    34   1.8
AL133410_6(AL133410|pid:none) Human DNA sequence from clone RP11...    34   1.8
(Q9Y490) RecName: Full=Talin-1;  &AB384085_1(AB384085|pid:none)        34   1.8
(P26039) RecName: Full=Talin-1;  &S11661(S11661) &X56123_1(X5612...    34   1.8
AF177198_1(AF177198|pid:none) Homo sapiens talin mRNA, complete ...    34   1.8
BC118833_1(BC118833|pid:none) Xenopus tropicalis nystagmus 1 pro...    33   4.1
AC092455_1(AC092455|pid:none) Homo sapiens BAC clone CTD-2017A21...    32   5.4
(P29074) RecName: Full=Tyrosine-protein phosphatase non-receptor...    32   5.4
AK314836_1(AK314836|pid:none) Homo sapiens cDNA, FLJ95723, highl...    32   5.4
BC140437_1(BC140437|pid:none) Synthetic construct Mus musculus c...    32   7.0
(Q9WU22) RecName: Full=Tyrosine-protein phosphatase non-receptor...    32   7.0

>(Q54K81) RecName: Full=Talin-B;
          Length = 2614

 Score = 44.7 bits (104), Expect = 0.001
 Identities = 19/41 (46%), Positives = 29/41 (70%)
 Frame = +3

Query: 3   FINQKNIXKEILIQYQRLIGMSEQKAKLNYIQLAKSLKTYG 125
           F  +K+  K+I  ++++L GMSE  +K  Y+QL +SLKTYG
Sbjct: 235 FHKKKDAEKDIYKEFRKLTGMSESNSKFRYVQLCRSLKTYG 275

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 137,016,049
Number of extensions: 1905191
Number of successful extensions: 3236
Number of sequences better than 10.0: 23
Number of HSP's gapped: 3236
Number of HSP's successfully gapped: 23
Length of query: 42
Length of database: 1,061,185,681
Length adjustment: 16
Effective length of query: 26
Effective length of database: 1,008,890,513
Effective search space: 26231153338
Effective search space used: 26231153338
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 25 (14.2 bits)
PSORT 

 psg: 0.66  gvh: 0.26  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for Contig-U05346-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0