Contig-U05341-1
Contig ID Contig-U05341-1
Contig update 2001. 8.29
Contig sequence
>Contig-U05341-1 (Contig-U05341-1Q) /CSM_Contig/Contig-U05341-1Q.Seq.d
AAATAATTAAAATTTTTTTTTTTTTTTTTTACACTCCACCCCAACCTCTA
CCTCTCCTCCTCCTCTTCTTCTTCTCCCCCATCCCTTTTTTTTTTTTTTT
TCCCTCACCACTCCTGCCTTTTTTAAT

Gap no gap
Contig length 127
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 4102327
End point 4102199
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U05341
List of clone(s)

est1=SSH312E,1,128
Translated Amino Acid sequence
IIKIFFFFFYTPPQPLPLLLLFFFSPIPFFFFFPSPLLPFL


Translated Amino Acid sequence (All Frames)
Frame A:
k*lkfffffftlhpnlylsssssssppslfffffphhsclf*


Frame B:
nn*nffffflhstptstspppllllphpfffffslttpaffn


Frame C:
IIKIFFFFFYTPPQPLPLLLLFFFSPIPFFFFFPSPLLPFL


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05341-1 (Contig-U05341-1Q)
/CSM_Contig/Contig-U05341-1Q.Seq.d
(127 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05341-1 (Contig-U05341-1Q) /CSM_Contig/Conti... 109 7e-25
Contig-U03565-1 (Contig-U03565-1Q) /CSM_Contig/Conti... 42 1e-04
Contig-U11340-1 (Contig-U11340-1Q) /CSM_Contig/Conti... 40 5e-04
Contig-U10791-1 (Contig-U10791-1Q) /CSM_Contig/Conti... 40 5e-04
Contig-U06628-1 (Contig-U06628-1Q) /CSM_Contig/Conti... 38 0.002
Contig-U14010-1 (Contig-U14010-1Q) /CSM_Contig/Conti... 36 0.008
Contig-U13964-1 (Contig-U13964-1Q) /CSM_Contig/Conti... 36 0.008
Contig-U11129-1 (Contig-U11129-1Q) /CSM_Contig/Conti... 36 0.008
Contig-U06697-1 (Contig-U06697-1Q) /CSM_Contig/Conti... 36 0.008
Contig-U05484-1 (Contig-U05484-1Q) /CSM_Contig/Conti... 36 0.008

>Contig-U05341-1 (Contig-U05341-1Q) /CSM_Contig/Contig-U05341-1Q.Seq.d
Length = 127

Score = 109 bits (55), Expect = 7e-25
Identities = 55/55 (100%)
Strand = Plus / Plus


Query: 31 acactccaccccaacctctacctctcctcctcctcttcttcttctcccccatccc 85
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31 acactccaccccaacctctacctctcctcctcctcttcttcttctcccccatccc 85


Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 102 ccctcaccactcctgccttttttaat 127
||||||||||||||||||||||||||
Sbjct: 102 ccctcaccactcctgccttttttaat 127


>Contig-U03565-1 (Contig-U03565-1Q) /CSM_Contig/Contig-U03565-1Q.Seq.d
Length = 1370

Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus


Query: 55 tcctcctcctcttcttcttct 75
|||||||||||||||||||||
Sbjct: 645 tcctcctcctcttcttcttct 625


Score = 36.2 bits (18), Expect = 0.008
Identities = 21/22 (95%)
Strand = Plus / Minus


Query: 54 ctcctcctcctcttcttcttct 75
||||||||| ||||||||||||
Sbjct: 643 ctcctcctcttcttcttcttct 622


Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 61 tcctcttcttcttc 74
||||||||||||||
Sbjct: 528 tcctcttcttcttc 515


Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 58 tcctcctcttcttc 71
||||||||||||||
Sbjct: 954 tcctcctcttcttc 941


Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 58 tcctcctcttcttc 71
||||||||||||||
Sbjct: 1071 tcctcctcttcttc 1058


Score = 26.3 bits (13), Expect = 7.8
Identities = 19/21 (90%)
Strand = Plus / Minus


Query: 54 ctcctcctcctcttcttcttc 74
|||||| || |||||||||||
Sbjct: 640 ctcctcttcttcttcttcttc 620


>Contig-U11340-1 (Contig-U11340-1Q) /CSM_Contig/Contig-U11340-1Q.Seq.d
Length = 1430

Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus


Query: 55 tcctcctcctcttcttcttc 74
||||||||||||||||||||
Sbjct: 393 tcctcctcctcttcttcttc 374


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1538
Number of Sequences: 6905
Number of extensions: 1538
Number of successful extensions: 757
Number of sequences better than 10.0: 132
length of query: 127
length of database: 5,674,871
effective HSP length: 14
effective length of query: 113
effective length of database: 5,578,201
effective search space: 630336713
effective search space used: 630336713
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)
dna update 2009. 7.19
Homology vs DNA
Query= Contig-U05341-1 (Contig-U05341-1Q) /CSM_Contig/Contig-U05341-1Q.Seq.d
(127 letters)

Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU038132) Dictyostelium discoideum slug cDNA, clone SSH312. 109 4e-32 3
(AC010635) Homo sapiens chromosome 5 clone CTD-2324F15, comp... 56 3e-04 1
(AC156266) Takifugu rubripes, *** SEQUENCING IN PROGRESS ***... 56 3e-04 1
(AC114081) Rattus norvegicus clone CH230-70H3, *** SEQUENCIN... 56 3e-04 1
(AC020935) Homo sapiens chromosome 5 clone CTD-2280P20, WORK... 56 3e-04 1
(FH826508) OSB_1252003xh14r1.ab1 OSB_1252 Nicotiana tabacum ... 56 3e-04 1
(BC084113) Xenopus laevis cDNA clone IMAGE:6946797, containi... 50 8e-04 2
(CU207316) Mouse DNA sequence from clone CH29-494L21 on chro... 54 0.001 1
(CT571243) Mouse DNA sequence from clone RP23-122I21 on chro... 54 0.001 1
(AC171204) Mus musculus BAC clone RP23-312J21 from chromosom... 54 0.001 1
(AC124900) Rattus norvegicus clone CH230-3F17, *** SEQUENCIN... 54 0.001 1
(AC120304) Rattus norvegicus clone CH230-112B11, WORKING DRA... 54 0.001 1
(AC094891) Rattus norvegicus clone CH230-6A5, *** SEQUENCING... 54 0.001 1
(AC094766) Rattus norvegicus clone CH230-5L5, WORKING DRAFT ... 54 0.001 1
(CC260744) CH261-19H18_Sp6.1 CH261 Gallus gallus genomic clo... 54 0.001 1
(FG552196) FSEL04_H05 Bambusa edulis, FSEL Phyllostachys edu... 54 0.001 1
(CI603813) Oryza sativa Japonica Group cDNA, clone: J02B3140... 50 0.001 2
(CK065257) 67174rsicem_3795.y1 Oryza sativa cv. PA64s panicl... 50 0.001 2
(AY551920) Oryza sativa (japonica cultivar-group) MADS-box p... 50 0.003 2
(AC117915) Rattus norvegicus clone CH230-231M14, *** SEQUENC... 42 0.003 2
(AC111229) Rattus norvegicus clone CH230-112C1, WORKING DRAF... 42 0.003 2
(AC117861) Rattus norvegicus clone CH230-346H3, *** SEQUENCI... 42 0.003 2
(AC167168) Mus musculus chromosome 1, clone RP23-100P14, com... 44 0.003 2
(AL450337) Human DNA sequence from clone RP11-51B10 on chrom... 36 0.003 2
(BH315709) CH230-12K20.TV CHORI-230 Segment 1 Rattus norvegi... 42 0.004 2
(AC136903) Mus musculus chromosome 9, clone RP23-475J16, com... 52 0.005 1
(AC123069) Mus musculus BAC clone RP23-23B21 from 9, complet... 52 0.005 1
(AC132499) Rattus norvegicus clone CH230-230A1, *** SEQUENCI... 52 0.005 1
(AC131963) Rattus norvegicus clone CH230-340L19, WORKING DRA... 52 0.005 1
(AC131838) Rattus norvegicus clone CH230-273G6, WORKING DRAF... 52 0.005 1
(AC131436) Rattus norvegicus clone CH230-5P1, *** SEQUENCING... 52 0.005 1
(AC128539) Rattus norvegicus clone CH230-382F1, WORKING DRAF... 52 0.005 1
(AC112411) Rattus norvegicus clone CH230-339N6, WORKING DRAF... 52 0.005 1
(AC108294) Rattus norvegicus clone CH230-277A22, *** SEQUENC... 52 0.005 1
(AC099238) Rattus norvegicus clone CH230-111H4, *** SEQUENCI... 52 0.005 1
(AC094051) Rattus norvegicus clone CH230-89D20, *** SEQUENCI... 52 0.005 1
(AK148958) Mus musculus 2 days neonate sympathetic ganglion ... 52 0.005 1
(EF983769) Mus musculus C57BL/6N IST12278A8BBF1 gene trap em... 52 0.005 1
(CT957357) Equus caballus GSS, BAC clone CH241-32M1, T7 end ... 52 0.005 1
(AJ928915) Theileria annulata EST, clone tam024b01_p1k. 52 0.005 1
(GO658630) ypo3-27-G07 Yellow perch ovarian library 3 Perca ... 52 0.005 1
(FL762867) CCGC11495.g1 CCGC Panicum virgatum early floral b... 52 0.005 1
(FL762866) CCGC11495.b1 CCGC Panicum virgatum early floral b... 52 0.005 1
(FG552165) FSEL04_E05 Bambusa edulis, FSEL Phyllostachys edu... 52 0.005 1
(EV228282) VV_PEa02b05.g2 Vitis vinifera cv. perlette LibA V... 52 0.005 1
(CK068525) 72190rsicem_3609.y1 Oryza sativa cv. PA64s panicl... 48 0.006 2
(CK047915) 48763rsiceh_18646.y1 Oryza sativa cv. PA64s panic... 48 0.006 2
(CK044853) 43370rsiceh_11261.y1 Oryza sativa cv. PA64s panic... 48 0.006 2
(CK014530) 31894rsicef_1384.y1 Oryza sativa cv. PA64s panicl... 48 0.007 2
(AK072683) Oryza sativa Japonica Group cDNA clone:J023140K24... 50 0.007 2
(AC027646) Mus musculus strain C57BL6/J clone RP23-185J14, W... 46 0.007 2
(AC116058) Rattus norvegicus clone CH230-204F1, WORKING DRAF... 40 0.009 3
(AC113872) Rattus norvegicus clone CH230-55K20, *** SEQUENCI... 44 0.009 3
(AG432490) Mus musculus molossinus DNA, clone:MSMg01-308G08.... 34 0.012 3
(EY751521) CS00-C5-003-105-G12-CT.F Sweet orange flower, gre... 38 0.013 2
(EA107193) Sequence 727 from patent US 7196245. 48 0.014 2
(FT212802) Rattus norvegicus DNA, BAC clone: RNB2-430D04, 3'... 40 0.015 2
(AL732587) Mouse DNA sequence from clone RP23-268K22 on chro... 42 0.018 2
(EF076649) Morone saxatilis NCKX1 mRNA, complete cds. 50 0.018 1
(BV927456) pRRL2:Newb:20080411:307530 USMARC Pig Breed SNP D... 50 0.018 1
(CT030230) Mouse DNA sequence from clone RP23-392N1 on chrom... 50 0.018 1
(CT030161) Mouse DNA sequence from clone RP23-235H10 on chro... 50 0.018 1
(CT025555) Mouse DNA sequence from clone RP24-84E11 on chrom... 50 0.018 1
(AL953853) Mouse DNA sequence from clone RP23-6M16 on chromo... 50 0.018 1
(AC162912) Mus musculus BAC clone RP24-381G1 from chromosome... 50 0.018 1
(AC161267) Mus musculus BAC clone RP23-247F21 from chromosom... 50 0.018 1
(AC161259) Mus musculus BAC clone RP23-465D18 from chromosom... 50 0.018 1
(AC160635) Mus musculus BAC clone RP23-396N20 from chromosom... 50 0.018 1
(AC158599) Mus musculus 10 BAC RP23-122O12 (Roswell Park Can... 50 0.018 1
(AC157921) Mus musculus chromosome 1, clone RP23-129L19, com... 50 0.018 1
(AC157513) Mus musculus BAC clone RP24-280G4 from chromosome... 50 0.018 1
(AC155822) Mus musculus BAC clone RP23-319J10 from chromosom... 50 0.018 1
(AC154853) Mus musculus BAC clone RP23-21C15 from 17, comple... 50 0.018 1
(AC145691) Mus musculus chromosome 1, clone RP24-278B15, com... 50 0.018 1
(AC134594) Mus musculus BAC clone RP23-388B6 from 12, comple... 50 0.018 1
(AC125273) Mus musculus chromosome 1, clone RP24-156N4, comp... 50 0.018 1
(AC122358) Mus musculus BAC clone RP23-406B6 from chromosome... 50 0.018 1
(AC116688) Mus musculus chromosome 17, clone RP24-169A20, co... 50 0.018 1
(AC114640) Mus musculus chromosome 17, clone RP24-125I7, com... 50 0.018 1
(AC114621) Mus musculus chromosome 3, clone RP24-93M7, compl... 50 0.018 1
(AC110574) Mus musculus chromosome 3, clone RP23-324B15, com... 50 0.018 1
(AC103627) Mus musculus chromosome 1, clone RP24-241N3, comp... 50 0.018 1
(AC102610) Mus musculus chromosome 19, clone RP23-411P21, co... 50 0.018 1
(AC102595) Mus musculus chromosome 10, clone RP23-360M11, co... 50 0.018 1
(AC098838) Genomic sequence for Mus musculus, clone RP23-27N... 50 0.018 1
(AC200430) Pongo abelii BAC clone CH276-43P12 from chromosom... 50 0.018 1
(CU329671) Schizosaccharomyces pombe chromosome II. 50 0.018 1
(CR382123) Kluyveromyces lactis strain NRRL Y-1140 chromosom... 50 0.018 1
(CP001334) Micromonas sp. RCC299 chromosome 16, complete seq... 50 0.018 1
(AY146588) Triticum monococcum BAC clone 453N11, complete se... 50 0.018 1
(AY022947) Oryza sativa microsatellite MRG5272 containing (C... 50 0.018 1
(AP008217) Oryza sativa (japonica cultivar-group) genomic DN... 50 0.018 1
(AP008216) Oryza sativa (japonica cultivar-group) genomic DN... 50 0.018 1
(AP008215) Oryza sativa (japonica cultivar-group) genomic DN... 50 0.018 1
(AP008213) Oryza sativa (japonica cultivar-group) genomic DN... 50 0.018 1
(AP006170) Oryza sativa Japonica Group genomic DNA, chromoso... 50 0.018 1
(AP005396) Oryza sativa Japonica Group genomic DNA, chromoso... 50 0.018 1
(AP004342) Oryza sativa Japonica Group genomic DNA, chromoso... 50 0.018 1
(AP003759) Oryza sativa Japonica Group genomic DNA, chromoso... 50 0.018 1
(AC146575) Medicago truncatula clone mth2-145m4, complete se... 50 0.018 1
(AC131343) Oryza sativa Japonica Group chromosome 11 clone O... 50 0.018 1
(AC114011) Oryza sativa Japonica Group chromosome 11 clone O... 50 0.018 1
(AC025296) Oryza sativa chromosome 10 BAC OSJNBa0076F20 geno... 50 0.018 1
(EA701256) Sequence 80135 from patent US 7365185. 50 0.018 1
(EA688982) Sequence 67861 from patent US 7365185. 50 0.018 1
(EA682345) Sequence 61224 from patent US 7365185. 50 0.018 1
(EA680946) Sequence 59825 from patent US 7365185. 50 0.018 1
(EA630704) Sequence 9583 from patent US 7365185. 50 0.018 1
(CS245451) Sequence 23 from Patent WO2005119251. 50 0.018 1
(CS227536) Sequence 23 from Patent EP1602926. 50 0.018 1
(GM034980) Sequence 23 from Patent EP1923702. 50 0.018 1
(AB247369) Plasmodium vivax pvctrp gene for circumsporozoite... 50 0.018 1
(Z98050) Human DNA sequence from clone RP3-451B15 on chromos... 50 0.018 1
(AL022401) Human DNA sequence from clone RP1-93L7 on chromos... 50 0.018 1
(AC107016) Homo sapiens 12 BAC RP11-153F5 (Roswell Park Canc... 50 0.018 1
(AC106857) Homo sapiens chromosome 8, clone RP11-262O21, com... 50 0.018 1
(AC022666) Homo sapiens, clone RP11-30K7, complete sequence. 50 0.018 1
(AC009058) Homo sapiens chromosome 16 clone RP11-292B23, com... 50 0.018 1
(AC154117) Mus musculus chromosome 5 clone RP23-480P5 map 5,... 50 0.018 1
(AC150589) Bos taurus clone CH240-116M23, WORKING DRAFT SEQU... 50 0.018 1
(AC139855) Mus musculus chromosome 1 clone RP23-195M16 map 1... 50 0.018 1
(AC126569) Rattus norvegicus clone CH230-27C5, WORKING DRAFT... 50 0.018 1
(AC121695) Rattus norvegicus clone CH230-34K7, *** SEQUENCIN... 50 0.018 1
(AC118178) Rattus norvegicus clone CH230-482D14, WORKING DRA... 50 0.018 1
(AC116289) Rattus norvegicus clone CH230-13P2, *** SEQUENCIN... 50 0.018 1
(AC108965) Rattus norvegicus clone CH230-170P17, WORKING DRA... 50 0.018 1
(AC103240) Rattus norvegicus clone CH230-27B21, WORKING DRAF... 50 0.018 1
(AC098381) Rattus norvegicus clone CH230-2E11, WORKING DRAFT... 50 0.018 1
(AC096446) Rattus norvegicus clone CH230-113F9, *** SEQUENCI... 50 0.018 1
(CU915428) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.018 1
(CU914679) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.018 1
(CU694231) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.018 1
(CU062511) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.018 1
(AP010249) Lotus japonicus genomic DNA, chromosome 5, clone:... 50 0.018 1
(AP005711) Oryza sativa Japonica Group genomic DNA, chromoso... 50 0.018 1
(AL078592) Human DNA sequence *** SEQUENCING CANCELLED *** f... 50 0.018 1
(AC201803) Zea mays chromosome 5 clone CH201-283P13; ZMMBBc0... 50 0.018 1
(AC197617) Pan troglodytes chromosome X clone CH251-650D11, ... 50 0.018 1
(AC191905) Sorex araneus clone SA_Ba-413L2, WORKING DRAFT SE... 50 0.018 1
(AC179324) Strongylocentrotus purpuratus clone R3-1102N7, WO... 50 0.018 1
(AC024920) Homo sapiens chromosome 12 clone RP11-153F5 map 1... 50 0.018 1
(FH325435) CHO_OF4552xf22r1.ab1 CHO_OF4 Nicotiana tabacum ge... 50 0.018 1
(EF971797) Mus musculus C57BL/6N IST12662F9HMF1 gene trap em... 50 0.018 1
(EF957151) Mus musculus C57BL/6N IST12662F9BBF1 gene trap em... 50 0.018 1
(AL429388) clone BA0AB031D07 of library BA0AB from strain CL... 50 0.018 1
(CZ989009) 204843 Tomato MboI BAC Library Solanum lycopersic... 50 0.018 1
(CR122490) Forward strand read from insert in 5'HPRT inserti... 50 0.018 1
(EE306971) AGENCOURT_86334828 NIH_ZGC_32 Danio rerio cDNA cl... 50 0.018 1
(EB263921) MCCN20-F-032805-501 Normalized MCC Neurons Aplysi... 50 0.018 1
(EB229733) PEG003-C-203669-501 Normalized Pedal-Pleural Gang... 50 0.018 1
(EB228005) PEG002-C-110187-501 Normalized Pedal-Pleural Gang... 50 0.018 1
(EB201701) PEG002-C-104206-501 Normalized Pedal-Pleural Gang... 50 0.018 1
(DT585986) aam01-41ms1-n02 Aam01 Acorus americanus cDNA clon... 50 0.018 1
(DN683332) CGX29-D04.x1d-t SHGC-CGX Gasterosteus aculeatus c... 50 0.018 1
(DN533401) 1361539 MARC 7BOV Bos taurus cDNA 5', mRNA sequence. 50 0.018 1
(DN532008) 1360003 MARC 7BOV Bos taurus cDNA 3', mRNA sequence. 50 0.018 1
(DB933235) Manihot esculenta mRNA, clone: CAS01_037_G17, 5'end. 50 0.018 1
(D47814) Oryza sativa Japonica Group cDNA, partial sequence ... 50 0.018 1
(CV780824) FGAS075235 Triticum aestivum FGAS: Library 2 Gate... 50 0.018 1
(CV015771) ONa-RHOD4_F4.T3 cDNA non-acclimated (NA) Rhododen... 50 0.018 1
(CU500402) Theobroma cacao, mRNA sequence (KZ0ACQ4YN18FM1). 50 0.018 1
(CT856400) Oryza sativa Indica Group EST sequence:OSIGCSA012... 50 0.018 1
(CK012098) 29728rsicef_8458.y1 Oryza sativa cv. PA64s panicl... 50 0.018 1
(CI295325) Oryza sativa Japonica Group cDNA, clone: 009-M037... 50 0.018 1
(CD252930) AGENCOURT_14214503 NICHD_XGC_Eye1 Xenopus laevis ... 50 0.018 1
(C73900) Oryza sativa Japonica Group cDNA, partial sequence ... 50 0.018 1
(GO328179) VBL6_24_P19_E001.g1 Normalized cDNA library from ... 50 0.018 1
(FP338692) Aquafirst Sea Bream SSH selection pathogen intest... 50 0.018 1
(FG552491) FSEL08_D05 Bambusa edulis, FSEL Phyllostachys edu... 50 0.018 1
(FG552242) FSEL05_D08 Bambusa edulis, FSEL Phyllostachys edu... 50 0.018 1
(FG552036) FSEL03_A07 Bambusa edulis, FSEL Phyllostachys edu... 50 0.018 1
(FF420552) G125P60029RA8.T0 Acorn worm blastula/gastrula pCM... 50 0.018 1
(FF071720) G1045P325RM20.T0 Aplysia californica Pooled Norma... 50 0.018 1
(EX272911) 1453621_5_K19_070 PY06 Carica papaya cDNA, mRNA s... 50 0.018 1
(AC167249) Mus musculus BAC clone RP23-41C8 from chromosome ... 44 0.020 3
(AC128881) Rattus norvegicus clone CH230-42F23, *** SEQUENCI... 40 0.022 3
(AC175035) Mus musculus chromosome 17 clone RP23-240H20, WOR... 44 0.025 3
(AC134040) Rattus norvegicus clone CH230-51O7, *** SEQUENCIN... 44 0.029 2
(CX118518) EI115G24 A normalized whole-life-cycle cDNA libra... 46 0.031 2
(AC137956) Mus musculus clone RP23-93K3, LOW-PASS SEQUENCE S... 44 0.033 2
(AC136910) Rattus norvegicus clone CH230-37E8, *** SEQUENCIN... 40 0.044 2
(AC111203) Rattus norvegicus clone CH230-7H1, *** SEQUENCING... 40 0.044 2
(AC110314) Rattus norvegicus clone CH230-198I24, WORKING DRA... 40 0.045 2
(AC150314) Mus musculus BAC clone RP23-269O24 from chromosom... 40 0.045 2
(AC130174) Rattus norvegicus clone CH230-14J11, WORKING DRAF... 40 0.045 2
(AC136677) Rattus norvegicus clone CH230-5P17, WORKING DRAFT... 40 0.045 2
(CU914592) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.045 2
(AC129583) Mus musculus chromosome 15, clone RP23-197P10, co... 46 0.045 2
(AC158391) Mus musculus BAC clone RP23-441C8 from chromosome... 40 0.045 2
(AC119807) Mus musculus chromosome 8, clone RP23-167I14, com... 42 0.045 2
(AC164979) Mus musculus BAC clone RP23-244J23 from chromosom... 44 0.045 2
(AC154617) Mus musculus BAC clone RP23-319O17 from chromosom... 40 0.045 2
(CT027602) Mouse DNA sequence from clone RP24-359G24 on chro... 44 0.046 2
(AL611951) Mouse DNA sequence from clone RP23-265O1 on chrom... 44 0.046 2
(AC100730) Mus musculus chromosome 15, clone RP24-288B1, com... 38 0.046 2
(AC178171) Strongylocentrotus purpuratus clone R3-3081O6, WO... 34 0.046 2
(AC154773) Mus musculus BAC clone RP24-448I5 from chromosome... 44 0.046 2
(AC115924) Mus musculus chromosome 15, clone RP24-511O11, co... 46 0.046 2
(AC140333) Mus musculus BAC clone RP24-326A21 from chromosom... 40 0.046 2
(FP102314) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 0.051 3
(EX686321) JS7C514JG Salt and heat stressed Fragaria vesca (... 34 0.054 2
(AK051222) Mus musculus 12 days embryo spinal ganglion cDNA,... 38 0.055 2
(AC027647) Mus musculus strain C57BL6/J clone RP23-7P8, WORK... 46 0.055 3
(ER968946) AF__Bc0026A03f AF__Bc Aquilegia formosa genomic, ... 40 0.057 2
(BV656662) S217P61871FA6.T0 Noemie Pan troglodytes troglodyt... 40 0.058 2
(AU041486) Mus musculus 4-cell embryo cDNA 3'-end sequence, ... 36 0.058 2
(C74564) Oryza sativa Japonica Group cDNA, partial sequence ... 44 0.065 2
(AC110462) Rattus norvegicus clone CH230-264O7, *** SEQUENCI... 44 0.066 3
(EH167740) LR_CC_05F08_M13R LR_CC Lumbricus rubellus cDNA cl... 40 0.068 2
(AC157617) Atelerix albiventris clone LB4-131H18, WORKING DR... 42 0.069 2
(CU855936) Zebrafish DNA sequence from clone CH1073-285G6 in... 48 0.073 1
(CU595952) Zebrafish DNA sequence from clone CH73-262H23 in ... 48 0.073 1
(CR548627) Zebrafish DNA sequence from clone DKEYP-24A7 in l... 48 0.073 1
(BV728871) PtTX4093 Pinus taeda genomic microsatellite enric... 48 0.073 1
(X69816) R.norvegicus CYP17 gene. 48 0.073 1
(FJ392393) Mus musculus strain 129/Sv cytochrome P450 family... 48 0.073 1
(CT009519) Mouse DNA sequence from clone RP23-145L1 on chrom... 48 0.073 1
(BC063252) Mus musculus myelin transcription factor 1, mRNA ... 48 0.073 1
(AY173019) Marmota monax woodchuck hepatitis virus major int... 48 0.073 1
(AL928818) Mouse DNA sequence from clone RP23-309M6 on chrom... 48 0.073 1
(AL845173) Mouse DNA sequence from clone RP23-322G1 on chrom... 48 0.073 1
(AL772199) Mouse DNA sequence from clone RP23-86J22 on chrom... 48 0.073 1
(AL713875) Mouse DNA sequence from clone RP23-17N7 on chromo... 48 0.073 1
(AL672274) Mouse DNA sequence from clone RP23-351G20 on chro... 48 0.073 1
(AL672101) Mouse DNA sequence from clone RP23-170E12 on chro... 48 0.073 1
(AL672015) Mouse DNA sequence from clone RP23-154O12 on chro... 48 0.073 1
(AL671908) Mouse DNA sequence from clone RP23-307G22 on chro... 48 0.073 1
(AL670673) Mouse DNA sequence from clone RP23-32L5 on chromo... 48 0.073 1
(AL662803) Mouse DNA sequence from clone RP23-215N10 on chro... 48 0.073 1
(AL627348) Mouse DNA sequence from clone RP23-421L2 on chrom... 48 0.073 1
(AL606824) Mouse DNA sequence from clone RP23-9G13 on chromo... 48 0.073 1
(AL591805) Mouse DNA sequence from clone RP23-90N15 on chrom... 48 0.073 1
(AL591478) Mouse DNA sequence from clone RP23-140D14 on chro... 48 0.073 1
(AL021127) Mus musculus chromosome X contigA; putative Magea... 48 0.073 1
(AF021335) Mus musculus T cell receptor gamma locus, TCR gam... 48 0.073 1
(AF004294) Mus musculus myelin transcription factor 1 mRNA, ... 48 0.073 1
(AC164643) Mus musculus BAC clone RP23-254F23 from chromosom... 48 0.073 1
(AC164078) Mus musculus chromosome 3, clone RP23-123C15, com... 48 0.073 1
(AC163614) Mus musculus BAC clone RP23-102K8 from chromosome... 48 0.073 1
(AC161599) Mus musculus BAC clone RP23-346B16 from chromosom... 48 0.073 1
(AC161590) Mus musculus BAC clone RP24-300B21 from chromosom... 48 0.073 1
(AC161170) Mus musculus chromosome 1, clone RP23-307G23, com... 48 0.073 1
(AC160989) Mus musculus BAC clone RP23-194N9 from chromosome... 48 0.073 1
(AC159994) Mus musculus chromosome 7, clone RP23-368F23, com... 48 0.073 1
(AC159638) Mus musculus BAC clone RP24-78C16 from chromosome... 48 0.073 1
(AC158514) Mus musculus BAC clone RP24-480D16 from chromosom... 48 0.073 1
(AC154992) Mus musculus chromosome 1, clone RP23-420P19, com... 48 0.073 1
(AC154903) Mus musculus BAC clone RP23-414E24 from chromosom... 48 0.073 1
(AC154672) Mus musculus BAC clone RP24-297H12 from 14, compl... 48 0.073 1
(AC154520) Mus musculus BAC clone RP23-471P16 from chromosom... 48 0.073 1
(AC154281) Mus musculus BAC clone RP24-271P6 from chromosome... 48 0.073 1
(AC154183) Mus musculus BAC clone RP23-474E16 from chromosom... 48 0.073 1
(AC154172) Mus musculus BAC clone RP23-429K7 from chromosome... 48 0.073 1
(AC153910) Mus musculus 6 BAC RP23-337M7 (Roswell Park Cance... 48 0.073 1
(AC153598) Mus musculus 6 BAC RP23-167L15 (Roswell Park Canc... 48 0.073 1
(AC153589) Mus musculus 6 BAC RP23-89P21 (Roswell Park Cance... 48 0.073 1
(AC153515) Mus musculus 10 BAC RP23-425D13 (Roswell Park Can... 48 0.073 1
(AC152452) Mus musculus BAC clone RP24-279M22 from chromosom... 48 0.073 1
(AC151729) Mus musculus BAC clone RP24-74F2 from chromosome ... 48 0.073 1
(AC149593) Mus musculus BAC clone RP23-34O23 from 7, complet... 48 0.073 1
(AC147556) Mus musculus BAC clone RP23-480N14 from 1, comple... 48 0.073 1
(AC147096) Mus musculus BAC clone RP23-448H3 from 14, comple... 48 0.073 1
(AC145297) Mus musculus BAC clone RP24-196O7 from chromosome... 48 0.073 1
(AC144772) Mus musculus BAC clone RP24-173G12 from chromosom... 48 0.073 1
(AC140381) Mus musculus BAC clone RP23-176M4 from 10, comple... 48 0.073 1
(AC139029) Mus musculus chromosome 14, clone RP23-393A18, co... 48 0.073 1
(AC138355) Mus musculus chromosome 8, clone RP24-281G1, comp... 48 0.073 1
(AC135469) Mus musculus BAC clone RP24-406G8 from 13, comple... 48 0.073 1
(AC134869) Mus musculus BAC clone RP23-137C6 from chromosome... 48 0.073 1
(AC134830) Mus musculus BAC clone RP24-498G16 from chromosom... 48 0.073 1
(AC134581) Mus musculus BAC clone RP24-90L20 from chromosome... 48 0.073 1
(AC133103) Mus musculus BAC clone RP23-226J10 from chromosom... 48 0.073 1
(AC132436) Mus musculus BAC clone RP23-226J18 from 1, comple... 48 0.073 1
(AC132349) Mus musculus BAC clone RP24-82B7 from chromosome ... 48 0.073 1
(AC132338) Mus musculus BAC clone RP24-158J16 from chromosom... 48 0.073 1
(AC132088) Mus musculus BAC clone RP24-410M8 from chromosome... 48 0.073 1
(AC131886) Rattus norvegicus 4 BAC CH230-53A1 (Children's Ho... 48 0.073 1
(AC131696) Mus musculus BAC clone RP23-403E5 from 1, complet... 48 0.073 1
(AC129609) Mus musculus BAC clone RP23-194H4 from chromosome... 48 0.073 1
(AC129290) Mus musculus BAC clone RP24-489L4 from chromosome... 48 0.073 1
(AC129079) Mus musculus BAC clone RP24-126J17 from chromosom... 48 0.073 1
(AC127589) Mus musculus BAC clone RP23-134K6 from 5, complet... 48 0.073 1
(AC127417) Mus musculus BAC clone RP23-459M2 from chromosome... 48 0.073 1
(AC126695) Mus musculus BAC clone RP23-313D2 from 18, comple... 48 0.073 1
(AC125533) Mus musculus BAC clone RP23-451C1 from chromosome... 48 0.073 1
(AC125381) Mus musculus BAC clone RP23-250N10 from chromosom... 48 0.073 1
(AC124672) Mus musculus chromosome 1, clone RP23-328G14, com... 48 0.073 1
(AC123949) Mus musculus BAC clone RP23-119H13 from 14, compl... 48 0.073 1
(AC122895) Mus musculus BAC clone RP23-69K14 from chromosome... 48 0.073 1
(AC122515) Mus musculus BAC clone RP24-455N18 from 9, comple... 48 0.073 1
(AC122513) Mus musculus BAC clone RP24-455A5 from 3, complet... 48 0.073 1
(AC122116) Mus musculus chromosome 7, clone RP23-449M8, comp... 48 0.073 1
(AC121585) Mus musculus BAC clone RP23-265M4 from 5, complet... 48 0.073 1
(AC121515) Rattus norvegicus strain Brown Norway clone RP31-... 48 0.073 1
(AC121149) Mus musculus chromosome 3, clone RP24-383A4, comp... 48 0.073 1
(AC119908) Mus musculus chromosome 7, clone RP24-240G4, comp... 48 0.073 1
(AC118472) Mus musculus chromosome 19, clone RP23-187N14, co... 48 0.073 1
(AC118206) Mus musculus chromosome 3, clone RP24-159J16, com... 48 0.073 1
(AC117702) Mus musculus chromosome 10, clone RP23-464I2, com... 48 0.073 1
(AC116861) Mus musculus chromosome 8, clone RP24-407N9, comp... 48 0.073 1
(AC114602) Mus musculus chromosome 8, clone RP23-339B16, com... 48 0.073 1
(AC111124) Mus musculus chromosome 7, clone RP23-331A21, com... 48 0.073 1
(AC111082) Mus musculus chromosome 17, clone RP23-140I9, com... 48 0.073 1
(AC110236) Mus musculus chromosome 15, clone RP23-104L4, com... 48 0.073 1
(AC110102) Rattus norvegicus 4 BAC CH230-209C7 (Children's H... 48 0.073 1
(AC105600) Rattus norvegicus 4 BAC CH230-209E1 (Children's H... 48 0.073 1
(AC104866) Mus musculus chromosome 17, clone RP23-268C14, co... 48 0.073 1
(AC103597) Mus musculus chromosome 18, clone RP23-435G4, com... 48 0.073 1
(AC102999) Rattus norvegicus 7 BAC CH230-33J22 (Children's H... 48 0.073 1
(AC102549) Mus musculus chromosome 18, clone RP23-138E12, co... 48 0.073 1
(AC101833) Mus musculus chromosome 1, clone RP24-496H15, com... 48 0.073 1
(AC101789) Mus musculus chromosome 1, clone RP24-150F11, com... 48 0.073 1
(AC099710) Mus musculus, clone RP23-366C6, complete sequence. 48 0.073 1
(AC097023) Rattus norvegicus BAC CH230-35L12 (Children's Hos... 48 0.073 1
(AC096070) Rattus norvegicus 4 BAC CH230-20J7 (Children's Ho... 48 0.073 1
(AC079959) Mus musculus strain C57BL/6J chromosome 12 clone ... 48 0.073 1
(AC068947) Mus Musculus Strain C57BL6/J Chromosome 3 BAC, RP... 48 0.073 1
(AC055817) Mus musculus, clone RP23-154I7, complete sequence. 48 0.073 1
(AC034108) Mus musculus strain 129S6/SvEvTac clone rp22-70m0... 48 0.073 1
(AC011194) Mus musculus chromosome 11, clone RP23-196F5, com... 48 0.073 1
(AB093267) Mus musculus mRNA for mKIAA0835 protein. 48 0.073 1
(AB082378) Mus musculus mRNA for neural zinc finger protein ... 48 0.073 1
(AC214847) Pan troglodytes BAC clone CH251-736L23 from chrom... 48 0.073 1
(AC197940) MACACA MULATTA BAC clone CH250-85A24 from chromos... 48 0.073 1
(AC188170) Pan troglodytes BAC clone CH251-584H12 from chrom... 48 0.073 1
(AC147052) Pan troglodytes BAC clone RP43-143G1 from chromos... 48 0.073 1
(AC146130) Pan troglodytes BAC clone RP43-4F10 from chromoso... 48 0.073 1
(AC146125) Pan troglodytes BAC clone RP43-4K13 from chromoso... 48 0.073 1
(FM992693) Candida dubliniensis CD36 chromosome 6, complete ... 48 0.073 1
(FJ532352) Solanum lycopersicum cultivar Micro-Tom thylakoid... 48 0.073 1
(EF067844) Hordeum vulgare vrs1 locus, complete sequence; an... 48 0.073 1
(DQ131132) Solanum lycopersicum thylakoid-bound ascorbate pe... 48 0.073 1
(DQ029334) Lycopersicon esculentum thylakoid-bound ascorbate... 48 0.073 1
(CT832219) Oryza sativa (indica cultivar-group) cDNA clone:O... 48 0.073 1
(CT485790) Leptosphaeria maculans : genomic region surroundi... 48 0.073 1
(CT485668) Leptosphaeria maculans : genomic region surroundi... 48 0.073 1
(CT485667) Leptosphaeria maculans : genomic region surroundi... 48 0.073 1
(CT485659) Leptosphaeria maculans : genomic region surroundi... 48 0.073 1
(AP008208) Oryza sativa (japonica cultivar-group) genomic DN... 48 0.073 1
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN... 48 0.073 1
(AP004774) Oryza sativa Japonica Group genomic DNA, chromoso... 48 0.073 1
(AP004119) Oryza sativa Japonica Group genomic DNA, chromoso... 48 0.073 1
(AP002868) Oryza sativa Japonica Group genomic DNA, chromoso... 48 0.073 1
(AP002541) Oryza sativa Japonica Group genomic DNA, chromoso... 48 0.073 1
(AM446211) Vitis vinifera contig VV78X051063.11, whole genom... 48 0.073 1
(AM443426) Vitis vinifera contig VV78X203730.9, whole genome... 48 0.073 1
(AL442007) Oryza sativa genomic DNA, chromosome 4, BAC clone... 48 0.073 1
(AF441567) Pinus taeda PtTX4138 microsatellite sequence. 48 0.073 1
(AF413573) Lycopersicon esculentum ascorbate peroxidase (APX... 48 0.073 1
(AF324782) Pinus taeda clone PtTX4093 microsatellite sequence. 48 0.073 1
(AC189491) Brassica rapa subsp. pekinensis clone KBrB084M06,... 48 0.073 1
(AC083943) Genomic sequence for Oryza sativa, Nipponbare str... 48 0.073 1
(FB896846) Sequence 116119 from Patent WO2008034648. 48 0.073 1
(FB875462) Sequence 94735 from Patent WO2008034648. 48 0.073 1
(FB781028) Sequence 301 from Patent WO2008034648. 48 0.073 1
(EA687028) Sequence 65907 from patent US 7365185. 48 0.073 1
(EA681842) Sequence 60721 from patent US 7365185. 48 0.073 1
(EA333119) Sequence 5611 from patent US 7306913. 48 0.073 1
(EA210149) Sequence 74464 from patent US 7214786. 48 0.073 1
(EA203628) Sequence 67943 from patent US 7214786. 48 0.073 1
(CQ344125) Sequence 18219 from Patent WO0157275. 48 0.073 1
(CQ331326) Sequence 5420 from Patent WO0157275. 48 0.073 1
(CQ307245) Sequence 18350 from Patent WO0186003. 48 0.073 1
(CQ294664) Sequence 5769 from Patent WO0186003. 48 0.073 1
(CQ270063) Sequence 18324 from Patent WO0157277. 48 0.073 1
(CQ257437) Sequence 5698 from Patent WO0157277. 48 0.073 1
(CQ231931) Sequence 18770 from Patent WO0157273. 48 0.073 1
(CQ218858) Sequence 5697 from Patent WO0157273. 48 0.073 1
(CQ183904) Sequence 15300 from Patent WO0157274. 48 0.073 1
(CQ173985) Sequence 5381 from Patent WO0157274. 48 0.073 1
(CQ148659) Sequence 18681 from Patent WO0157276. 48 0.073 1
(CQ135563) Sequence 5585 from Patent WO0157276. 48 0.073 1
(CQ109959) Sequence 18818 from Patent WO0157272. 48 0.073 1
(CQ096765) Sequence 5624 from Patent WO0157272. 48 0.073 1
(CQ078869) Sequence 14669 from Patent WO0157278. 48 0.073 1
(CQ069643) Sequence 5443 from Patent WO0157278. 48 0.073 1
(AX763050) Sequence 44 from Patent WO03040393. 48 0.073 1
(GN009561) Sequence 2002 from Patent EP2014669. 48 0.073 1
(GC701788) Sequence 17033 from patent US 6812339. 48 0.073 1
(GC701787) Sequence 17032 from patent US 6812339. 48 0.073 1
(GC697948) Sequence 13193 from patent US 6812339. 48 0.073 1
(GC696580) Sequence 11824 from patent US 6812339. 48 0.073 1
(AC130187) Atelerix albiventris clone LB4-344F17, complete s... 48 0.073 1
(AC198637) Monosiga brevicollis clone MonoB-45O20, complete ... 48 0.073 1
(X54171) H.sapiens NG2-6 DNA. 48 0.073 1
(EF444997) Homo sapiens macrophage mannose receptor 1 precur... 48 0.073 1
(DQ011222) Homo sapiens thyroid peroxidase (TPO) gene, compl... 48 0.073 1
(AL928580) Human DNA sequence from clone RP11-199F9 on chrom... 48 0.073 1
(AL445675) Human DNA sequence from clone RP11-498M14 on chro... 48 0.073 1
(AL359234) Human chromosome 14 DNA sequence BAC C-2184N20 of... 48 0.073 1
(AL355606) Human DNA sequence from clone RP11-90I7 on chromo... 48 0.073 1
(AL162633) Human chromosome 14 DNA sequence BAC R-210O8 of l... 48 0.073 1
(AL162384) Human DNA sequence from clone RP11-218I7 on chrom... 48 0.073 1
(AL158015) Human DNA sequence from clone RP11-195N11 on chro... 48 0.073 1
(AL157814) Human DNA sequence from clone RP11-285E18 on chro... 48 0.073 1
(AL139010) Human DNA sequence from clone RP11-444M10 on chro... 48 0.073 1
(AC193096) Homo sapiens chromosome 10 clone WI2-1591L14, com... 48 0.073 1
(AC140998) Homo sapiens X BAC RP11-428I5 (Roswell Park Cance... 48 0.073 1
(AC113426) Homo sapiens chromosome 5 clone RP11-718N2, compl... 48 0.073 1
(AC109810) Homo sapiens chromosome 11, clone CTD-2537L20, co... 48 0.073 1
(AC108489) Homo sapiens BAC clone RP13-981I10 from 2, comple... 48 0.073 1
(AC105450) Homo sapiens BAC clone RP11-112B11 from 2, comple... 48 0.073 1
(AC093791) Homo sapiens BAC clone RP11-261K4 from 4, complet... 48 0.073 1
(AC093530) Homo sapiens chromosome 5 clone RP11-401N6, compl... 48 0.073 1
(AC093302) Homo sapiens chromosome 5 clone RP11-60A8, comple... 48 0.073 1
(AC092610) Homo sapiens BAC clone RP11-160E17 from 7, comple... 48 0.073 1
(AC074045) Homo sapiens Xp BAC RP11-60N3 (Roswell Park Cance... 48 0.073 1
(AC069023) Homo sapiens chromosome 10 clone RP11-457D2, comp... 48 0.073 1
(AC053546) Homo sapiens BAC clone RP11-805D5 from 7, complet... 48 0.073 1
(AC024295) Homo sapiens chromosome 11, clone RP11-108L12, co... 48 0.073 1
(AC016839) Homo sapiens chromosome 18, clone RP11-399L5, com... 48 0.073 1
(AC008393) Homo sapiens chromosome 5 clone CTC-241N9, comple... 48 0.073 1
(AC004961) Homo sapiens PAC clone RP5-1098J4 from 7, complet... 48 0.073 1
(AC004870) Homo sapiens PAC clone RP4-739M23 from 7, complet... 48 0.073 1
(AC146990) Lytechinus variegatus clone BLV-104N16, WORKING D... 48 0.073 1
(AC146151) Pan troglodytes chromosome UNK clone RP43-2B20, *... 48 0.073 1
(AC146019) Pan troglodytes chromosome 7 clone RP43-13O16, WO... 48 0.073 1
(AC145861) Pan troglodytes chromosome UNK clone RP43-21D9, *... 48 0.073 1
(AC145429) Mus musculus chromosome 12 clone RP24-265I10 map ... 48 0.073 1
(AC141689) Apis mellifera clone CH224-55I11, *** SEQUENCING ... 48 0.073 1
(AC141219) Rattus norvegicus clone CH230-103L2, WORKING DRAF... 48 0.073 1
(AC141086) Mus musculus clone RP23-341A19, WORKING DRAFT SEQ... 48 0.073 1
(AC140744) Rattus norvegicus clone CH230-358K1, WORKING DRAF... 48 0.073 1
(AC139928) Rattus norvegicus clone CH230-216O6, WORKING DRAF... 48 0.073 1
(AC139821) Homo sapiens chromosome 16 clone RP11-187M15, WOR... 48 0.073 1
(AC139523) Rattus norvegicus clone CH230-522D14, WORKING DRA... 48 0.073 1
(AC139393) Rattus norvegicus clone CH230-49L12, WORKING DRAF... 48 0.073 1
(AC137805) Homo sapiens chromosome 16 clone RP11-863C20, WOR... 48 0.073 1
(AC137366) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 48 0.073 1
(AC136831) Rattus norvegicus clone CH230-74I8, WORKING DRAFT... 48 0.073 1
(AC136070) Rattus norvegicus clone CH230-321O22, *** SEQUENC... 48 0.073 1
(AC135930) Rattus norvegicus clone CH230-422P12, WORKING DRA... 48 0.073 1
(AC133593) Mus musculus chromosome 8 clone RP24-549B16 map 8... 48 0.073 1
(AC132063) Rattus norvegicus clone CH230-2P24, *** SEQUENCIN... 48 0.073 1
(AC131368) Rattus norvegicus clone CH230-123J22, WORKING DRA... 48 0.073 1
(AC130955) Rattus norvegicus clone CH230-448H6, *** SEQUENCI... 48 0.073 1
(AC130641) Rattus norvegicus clone CH230-484C13, WORKING DRA... 48 0.073 1
(AC130229) Rattus norvegicus clone CH230-206D4, *** SEQUENCI... 48 0.073 1
(AC130167) Rattus norvegicus clone CH230-103P21, WORKING DRA... 48 0.073 1
(AC130023) Rattus norvegicus clone CH230-106L6, WORKING DRAF... 48 0.073 1
(AC129444) Rattus norvegicus clone CH230-31P1, WORKING DRAFT... 48 0.073 1
(AC128533) Rattus norvegicus clone CH230-472G19, *** SEQUENC... 48 0.073 1
(AC127876) Rattus norvegicus clone CH230-226H4, WORKING DRAF... 48 0.073 1
(AC127868) Rattus norvegicus clone CH230-244F15, WORKING DRA... 48 0.073 1
(AC127103) Rattus norvegicus clone CH230-116E2, *** SEQUENCI... 48 0.073 1
(AC127101) Rattus norvegicus clone CH230-266H6, *** SEQUENCI... 48 0.073 1
(AC126587) Rattus norvegicus clone CH230-112I8, *** SEQUENCI... 48 0.073 1
(AC126580) Rattus norvegicus clone CH230-448F6, WORKING DRAF... 48 0.073 1
(AC125985) Rattus norvegicus clone CH230-125G9, WORKING DRAF... 48 0.073 1
(AC125862) Rattus norvegicus clone CH230-78J23, WORKING DRAF... 48 0.073 1
(AC125852) Rattus norvegicus clone CH230-436I19, *** SEQUENC... 48 0.073 1
(AC125707) Rattus norvegicus clone CH230-11G2, WORKING DRAFT... 48 0.073 1
(AC124859) Homo sapiens chromosome 5 clone RP11-876M24, WORK... 48 0.073 1
(AC123889) Rattus norvegicus clone CH230-321P9, WORKING DRAF... 48 0.073 1
(AC123165) Rattus norvegicus clone CH230-44F23, *** SEQUENCI... 48 0.073 1
(AC123154) Rattus norvegicus clone CH230-170L4, WORKING DRAF... 48 0.073 1
(AC122618) Rattus norvegicus clone CH230-65D16, WORKING DRAF... 48 0.073 1
(AC121656) Rattus norvegicus clone CH230-465A10, WORKING DRA... 48 0.073 1
(AC121381) Rattus norvegicus clone CH230-82O20, WORKING DRAF... 48 0.073 1
(AC121062) Rattus norvegicus clone CH230-72D11, *** SEQUENCI... 48 0.073 1
(AC120903) Rattus norvegicus clone CH230-459A19, *** SEQUENC... 48 0.073 1
(AC120770) Rattus norvegicus clone CH230-204F23, WORKING DRA... 48 0.073 1
(AC119374) Rattus norvegicus clone CH230-482D9, WORKING DRAF... 48 0.073 1
(AC116197) Rattus norvegicus clone CH230-139D12, *** SEQUENC... 48 0.073 1
(AC115131) Rattus norvegicus clone CH230-101B24, *** SEQUENC... 48 0.073 1
(AC114717) Rattus norvegicus clone CH230-13D14, *** SEQUENCI... 48 0.073 1
(AC114197) Rattus norvegicus clone CH230-213I14, *** SEQUENC... 48 0.073 1
(AC113861) Rattus norvegicus clone CH230-250H5, WORKING DRAF... 48 0.073 1
(AC113790) Rattus norvegicus clone CH230-242L13, *** SEQUENC... 48 0.073 1
(AC112821) Rattus norvegicus clone CH230-36F6, *** SEQUENCIN... 48 0.073 1
(AC111582) Rattus norvegicus clone CH230-75I3, *** SEQUENCIN... 48 0.073 1
(AC111355) Rattus norvegicus clone CH230-159M7, WORKING DRAF... 48 0.073 1
(AC111298) Rattus norvegicus clone CH230-224E14, *** SEQUENC... 48 0.073 1
(AC111210) Rattus norvegicus clone CH230-212J4, *** SEQUENCI... 48 0.073 1
(AC110662) Rattus norvegicus clone CH230-170H7, WORKING DRAF... 48 0.073 1
(AC109723) Rattus norvegicus clone CH230-319N17, *** SEQUENC... 48 0.073 1
(AC109112) Rattus norvegicus clone CH230-247H15, WORKING DRA... 48 0.073 1
(AC108776) Mus musculus chromosome 1 clone RP23-365C15 map 1... 48 0.073 1
(AC106668) Rattus norvegicus clone CH230-101D9, *** SEQUENCI... 48 0.073 1
(AC106585) Rattus norvegicus clone CH230-205E11, WORKING DRA... 48 0.073 1
(AC103268) Rattus norvegicus clone CH230-228A14, WORKING DRA... 48 0.073 1
(AC103196) Rattus norvegicus clone CH230-190F13, *** SEQUENC... 48 0.073 1
(AC099281) Rattus norvegicus clone CH230-67J8, WORKING DRAFT... 48 0.073 1
(AC099096) Rattus norvegicus clone CH230-151I14, *** SEQUENC... 48 0.073 1
(AC098940) Rattus norvegicus clone CH230-11F19, *** SEQUENCI... 48 0.073 1
(AC098463) Rattus norvegicus clone CH230-2K5, WORKING DRAFT ... 48 0.073 1
(AC098207) Rattus norvegicus clone CH230-149C10, WORKING DRA... 48 0.073 1
(AC098144) Rattus norvegicus clone CH230-172G3, *** SEQUENCI... 48 0.073 1
(AC098075) Rattus norvegicus clone CH230-120M14, WORKING DRA... 48 0.073 1
(AC097884) Rattus norvegicus clone CH230-94K14, *** SEQUENCI... 48 0.073 1
(AC097311) Rattus norvegicus clone CH230-191E1, WORKING DRAF... 48 0.073 1
(AC097286) Rattus norvegicus clone CH230-19G10, WORKING DRAF... 48 0.073 1
(AC096527) Rattus norvegicus clone CH230-78H3, *** SEQUENCIN... 48 0.073 1
(AC096172) Rattus norvegicus clone CH230-11I9, *** SEQUENCIN... 48 0.073 1
(AC095903) Rattus norvegicus clone CH230-10L19, *** SEQUENCI... 48 0.073 1
(AC095279) Rattus norvegicus clone CH230-10L16, WORKING DRAF... 48 0.073 1
(AC095135) Rattus norvegicus clone CH230-8C1, WORKING DRAFT ... 48 0.073 1
(AC094906) Rattus norvegicus clone CH230-6H23, *** SEQUENCIN... 48 0.073 1
(AC094600) Rattus norvegicus clone CH230-4A17, *** SEQUENCIN... 48 0.073 1
(AC094593) Rattus norvegicus clone CH230-4D11, *** SEQUENCIN... 48 0.073 1

>(AU038132) Dictyostelium discoideum slug cDNA, clone SSH312.
Length = 128

Score = 109 bits (55), Expect(3) = 4e-32
Identities = 55/55 (100%)
Strand = Plus / Plus


Query: 31 acactccaccccaacctctacctctcctcctcctcttcttcttctcccccatccc 85
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31 acactccaccccaacctctacctctcctcctcctcttcttcttctcccccatccc 85

Score = 52.0 bits (26), Expect(3) = 4e-32
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 102 ccctcaccactcctgccttttttaat 127
||||||||||||||||||||||||||
Sbjct: 102 ccctcaccactcctgccttttttaat 127

Score = 24.3 bits (12), Expect(3) = 4e-32
Identities = 12/12 (100%)
Strand = Plus / Plus


Query: 1 aaataattaaaa 12
||||||||||||
Sbjct: 1 aaataattaaaa 12

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 154,927,926
Number of extensions: 17852704
Number of successful extensions: 8235883
Number of sequences better than 10.0: 15036
Length of query: 127
Length of database: 104,622,809,269
Length adjustment: 22
Effective length of query: 105
Effective length of database: 102,296,446,593
Effective search space: 10741126892265
Effective search space used: 10741126892265
X1: 11 (21.8 bits)
S2: 20 (40.1 bits)

protein update 2009. 8. 1
Homology vs Protein
Query= Contig-U05341-1 (Contig-U05341-1Q) /CSM_Contig/Contig-U05341-1Q.Seq.d
(127 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 25,402,768
Number of extensions: 50168
Number of successful extensions: 86
Number of sequences better than 10.0: 0
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 0
Length of query: 42
Length of database: 1,061,185,681
Length adjustment: 16
Effective length of query: 26
Effective length of database: 1,008,890,513
Effective search space: 26231153338
Effective search space used: 26231153338
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 25 (14.2 bits)

PSORT

psg: 0.99 gvh: 0.54 alm: 0.26 top: 0.40 tms: 0.07 mit: 0.41 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.31 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
16.0 %: cytoplasmic
16.0 %: Golgi
16.0 %: mitochondrial
12.0 %: nuclear
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall

>> prediction for Contig-U05341-1 is end

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0