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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05312-1
Contig ID Contig-U05312-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U05312-1 (Contig-U05312-1Q) /CSM_Contig/Contig-U05312-1Q.Seq.d
CCCCCCTCGGGTCGACCCCGCGTCCGATAATAAAATGGCATCAAAACTTG
GATTTGTTCATCAAGCTACACAAAATGTTTTATTTAAACAACCACGTTTC
TATTTAGAGGCTTCATCAAAAGGTCAATTTGCTGATTCAATTGTTGATTT
GTCAGGTATTCAACGTTGGAATAATGATAGAAGTAAAATAGGTAATCAAT
TTTCAAATAGATTCGTTAAACCATCACGTGTTAAATTTTTAAGAAAGAAA
CAAGTTCAAAAATATAAATGGGATCACTTTGTTTATGATGTTTGTAAAAA
TTATGAATTTATTAGAGAAAATGCAAGAGAAATTTCAAGAGAACCAAACA
GATTAGCAAAAATTGAAAGAGCAAATTCATGGTTAGGTGATTATCATCAA
TAACCCAAAAAAAAGAAAAATAAAAAATAAAAAATTTAAAAATAATCAAT
TAATTTAGTTAAAAAGGAAAAAGAAAAAAA
Gap no gap
Contig length 480
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 1612376
End point 1612830
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 5
Link to clone list U05312
List of clone(s) 

est1=VSI651F,1,453
est2=VSF639F,16,470
est3=VSF639Z,24,444
est4=VSI651Z,27,440
est5=SSH143E,35,481
Translated Amino Acid sequence 
PPRVDPASDNKMASKLGFVHQATQNVLFKQPRFYLEASSKGQFADSIVDLSGIQRWNNDR
SKIGNQFSNRFVKPSRVKFLRKKQVQKYKWDHFVYDVCKNYEFIRENAREISREPNRLAK
IERANSWLGDYHQ*pkkkknkk*ki*k*sinlvkkekek
Translated Amino Acid sequence (All Frames) 
Frame A:
ppsgrprvr**ngiktwicsssytkcfi*tttflfrgfikrsic*fnc*fvrystle***
k*nr*sifk*ir*titc*ifkketsski*mgslcl*cl*kl*iy*rkckrnfkrtkqisk
n*kskfmvr*lssitqkkek*kiknlkiin*fs*kgkrkk


Frame B:
PPRVDPASDNKMASKLGFVHQATQNVLFKQPRFYLEASSKGQFADSIVDLSGIQRWNNDR
SKIGNQFSNRFVKPSRVKFLRKKQVQKYKWDHFVYDVCKNYEFIRENAREISREPNRLAK
IERANSWLGDYHQ*pkkkknkk*ki*k*sinlvkkekek


Frame C:
plgstprpiikwhqnldlfiklhkmfylnnhvsi*rlhqkvnlliqllicqvfnvgimie
vk*vinfqidslnhhvlnf*ernkfkningitlfmmfvkimnllekmqekfqenqtd*qk
lkeqihg*viiinnpkkrkiknkkfknnqli*lkrkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05312-1 (Contig-U05312-1Q)
/CSM_Contig/Contig-U05312-1Q.Seq.d
         (480 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05312-1 (Contig-U05312-1Q) /CSM_Contig/Conti...   805  0.0
Contig-U14905-1 (Contig-U14905-1Q) /CSM_Contig/Conti...    54  1e-07
Contig-U06085-1 (Contig-U06085-1Q) /CSM_Contig/Conti...    54  1e-07
Contig-U02284-1 (Contig-U02284-1Q) /CSM_Contig/Conti...    54  1e-07
Contig-U06959-1 (Contig-U06959-1Q) /CSM_Contig/Conti...    52  6e-07
Contig-U04925-1 (Contig-U04925-1Q) /CSM_Contig/Conti...    52  6e-07
Contig-U01539-1 (Contig-U01539-1Q) /CSM_Contig/Conti...    52  6e-07
Contig-U06970-1 (Contig-U06970-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U14611-1 (Contig-U14611-1Q) /CSM_Contig/Conti...    38  0.008
Contig-U14423-1 (Contig-U14423-1Q) /CSM_Contig/Conti...    38  0.008

>Contig-U05312-1 (Contig-U05312-1Q) /CSM_Contig/Contig-U05312-1Q.Seq.d
          Length = 480

 Score =  805 bits (406), Expect = 0.0
 Identities = 406/406 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccccctcgggtcgaccccgcgtccgataataaaatggcatcaaaacttggatttgttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cccccctcgggtcgaccccgcgtccgataataaaatggcatcaaaacttggatttgttca 60

                                                                       
Query: 61  tcaagctacacaaaatgttttatttaaacaaccacgtttctatttagaggcttcatcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcaagctacacaaaatgttttatttaaacaaccacgtttctatttagaggcttcatcaaa 120

                                                                       
Query: 121 aggtcaatttgctgattcaattgttgatttgtcaggtattcaacgttggaataatgatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aggtcaatttgctgattcaattgttgatttgtcaggtattcaacgttggaataatgatag 180

                                                                       
Query: 181 aagtaaaataggtaatcaattttcaaatagattcgttaaaccatcacgtgttaaattttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagtaaaataggtaatcaattttcaaatagattcgttaaaccatcacgtgttaaattttt 240

                                                                       
Query: 241 aagaaagaaacaagttcaaaaatataaatgggatcactttgtttatgatgtttgtaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagaaagaaacaagttcaaaaatataaatgggatcactttgtttatgatgtttgtaaaaa 300

                                                                       
Query: 301 ttatgaatttattagagaaaatgcaagagaaatttcaagagaaccaaacagattagcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttatgaatttattagagaaaatgcaagagaaatttcaagagaaccaaacagattagcaaa 360

                                                         
Query: 361 aattgaaagagcaaattcatggttaggtgattatcatcaataaccc 406
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aattgaaagagcaaattcatggttaggtgattatcatcaataaccc 406


>Contig-U14905-1 (Contig-U14905-1Q) /CSM_Contig/Contig-U14905-1Q.Seq.d
          Length = 524

 Score = 54.0 bits (27), Expect = 1e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  cccccctcgggtcgaccccgcgtccga 27
          |||||||||||||||||||||||||||
Sbjct: 6  cccccctcgggtcgaccccgcgtccga 32


>Contig-U06085-1 (Contig-U06085-1Q) /CSM_Contig/Contig-U06085-1Q.Seq.d
          Length = 961

 Score = 54.0 bits (27), Expect = 1e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  cccccctcgggtcgaccccgcgtccga 27
          |||||||||||||||||||||||||||
Sbjct: 14 cccccctcgggtcgaccccgcgtccga 40


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6542
Number of Sequences: 6905
Number of extensions: 6542
Number of successful extensions: 579
Number of sequences better than 10.0: 209
length of query: 480
length of database: 5,674,871
effective HSP length: 16
effective length of query: 464
effective length of database: 5,564,391
effective search space: 2581877424
effective search space used: 2581877424
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7.18
Homology vs DNA 
Query= Contig-U05312-1 (Contig-U05312-1Q) /CSM_Contig/Contig-U05312-1Q.Seq.d
         (480 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU269026) Dictyostelium discoideum vegetative cDNA clone:VS...   805   0.0    1
(AU265542) Dictyostelium discoideum vegetative cDNA clone:VS...   753   0.0    1
(AU265543) Dictyostelium discoideum vegetative cDNA clone:VS...   747   0.0    1
(AU038001) Dictyostelium discoideum slug cDNA, clone SSH143.      737   0.0    1
(AU269027) Dictyostelium discoideum vegetative cDNA clone:VS...   716   0.0    2
(AU266015) Dictyostelium discoideum vegetative cDNA clone:VS...    52   0.002  2
(AU268940) Dictyostelium discoideum vegetative cDNA clone:VS...    52   0.002  2
(DV774433) McClintock41_B07.ab1 Homarus EST library project ...    54   0.005  1
(AU269391) Dictyostelium discoideum vegetative cDNA clone:VS...    54   0.005  1
(AU269273) Dictyostelium discoideum vegetative cDNA clone:VS...    54   0.005  1
(AU269228) Dictyostelium discoideum vegetative cDNA clone:VS...    54   0.005  1
(AU269201) Dictyostelium discoideum vegetative cDNA clone:VS...    54   0.005  1
(AU266852) Dictyostelium discoideum vegetative cDNA clone:VS...    54   0.005  1
(AU266645) Dictyostelium discoideum vegetative cDNA clone:VS...    54   0.005  1
(AU266108) Dictyostelium discoideum vegetative cDNA clone:VS...    54   0.005  1
(AU266104) Dictyostelium discoideum vegetative cDNA clone:VS...    54   0.005  1
(AU269381) Dictyostelium discoideum vegetative cDNA clone:VS...    52   0.020  1
(AU269337) Dictyostelium discoideum vegetative cDNA clone:VS...    52   0.020  1
(AU269176) Dictyostelium discoideum vegetative cDNA clone:VS...    52   0.020  1
(AU268958) Dictyostelium discoideum vegetative cDNA clone:VS...    52   0.020  1
(AU266788) Dictyostelium discoideum vegetative cDNA clone:VS...    52   0.020  1
(AU266778) Dictyostelium discoideum vegetative cDNA clone:VS...    52   0.020  1
(AU266370) Dictyostelium discoideum vegetative cDNA clone:VS...    52   0.020  1
(AU266229) Dictyostelium discoideum vegetative cDNA clone:VS...    52   0.020  1
(AU266151) Dictyostelium discoideum vegetative cDNA clone:VS...    52   0.020  1
(CF338151) JMT--08-O08.b1 AtJMT-overexpressing transgenic ri...    52   0.020  1
(CF338000) JMT--08-K22.b1 AtJMT-overexpressing transgenic ri...    52   0.020  1
(CF337938) JMT--08-J12.b1 AtJMT-overexpressing transgenic ri...    52   0.020  1
(CF337901) JMT--08-I16.b1 AtJMT-overexpressing transgenic ri...    52   0.020  1
(CF337756) JMT--08-F10.b1 AtJMT-overexpressing transgenic ri...    52   0.020  1
(CF337748) JMT--08-F06.b1 AtJMT-overexpressing transgenic ri...    52   0.020  1
(CF337576) JMT--08-B09.b1 AtJMT-overexpressing transgenic ri...    52   0.020  1
(CF337557) JMT--08-A18.b1 AtJMT-overexpressing transgenic ri...    52   0.020  1
(CF337548) JMT--08-A13.b1 AtJMT-overexpressing transgenic ri...    52   0.020  1
(FC359500) CAYY31872.fwd CAYY Physcomitrella patens subsp. p...    52   0.020  1
(EY824557) PT11-C1-901-068-D12-CT.F Poncirus trifoliata leaf...    52   0.020  1
(DV774955) McClintock_50_D05.ab1 Homarus EST library project...    44   0.034  2
(CT698774) Danio rerio EST, clone ZF_mu_201g13 3'.                 38   0.044  3
(CU606878) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.080  1
(CU582968) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.080  1
(AC176732) Strongylocentrotus purpuratus clone R3-3096N5, WO...    50   0.080  1
(DN578186) 92231624 Sea Urchin primary mesenchyme cell cDNA ...    50   0.080  1
(CJ367597) Molgula tectiformis cDNA, gastrula/neurula clone:...    50   0.080  1
(CD294477) StrPu537.009509 Sea urchin embryo 20hr blastula s...    50   0.080  1
(BB975725) Plasmodium berghei str. ANKA cDNA clone: OK005571...    50   0.080  1
(EY798930) CR05-C3-701-070-D05-CT.F Mandarin fruit, developm...    50   0.080  1
(EY769273) CR05-C1-102-029-C03-CT.F Mandarin leaf, infected ...    50   0.080  1
(EY768386) CR05-C1-102-027-C10-CT.F Mandarin leaf, infected ...    50   0.080  1
(EY692007) CS00-C2-003-086-D10-CT.F Sweet orange bark, green...    50   0.080  1
(EY657225) CS00-C1-100-079-E11-CT.F Sweet orange leaf, green...    50   0.080  1
(CT627203) Danio rerio EST, clone ZF_mu_74o06 3'.                  46   0.14   2
(EY861739) CM30-C1-401-028-H02-CT.F Sweet lime leaf, infecte...    42   0.18   2
(EY709841) CS00-C3-701-002-A06-CT.F Sweet orange fruit, deve...    40   0.27   2
(DN791751) 90805571 Sea Urchin primary mesenchyme cell cDNA ...    48   0.32   1
(CV874246) PDUts1124F05 Porcine testis cDNA library I Sus sc...    48   0.32   1
(CT631096) Danio rerio EST, clone ZF_mu_108k09 3'.                 48   0.32   1
(CT615040) Danio rerio EST, clone ZF_mu_77i01 3'.                  48   0.32   1
(CF586318) AGENCOURT_8863446_updated NIH_MGC_139 Mus musculu...    48   0.32   1
(BB975645) Plasmodium berghei str. ANKA cDNA clone: OK005486...    48   0.32   1
(BB974809) Plasmodium berghei str. ANKA cDNA clone: OK004624...    48   0.32   1
(BB973318) Plasmodium berghei str. ANKA cDNA clone: OK003095...    48   0.32   1
(BB973134) Plasmodium berghei str. ANKA cDNA clone: OK002870...    48   0.32   1
(EY885875) LT33-C1-003-011-H03-CT.F Tahiti lime leaf, greenh...    48   0.32   1
(EY843476) CA26-C1-002-015-D06-CT.F Sour orange leaf, field ...    48   0.32   1
(EY838663) PT11-C9-005-007-F12-CT.F Poncirus trifoliata seed...    48   0.32   1
(EY816232) PT11-C1-900-071-H12-CT.F Poncirus trifoliata leaf...    48   0.32   1
(EY796659) CR05-C3-701-042-F05-CT.F Mandarin fruit, developm...    48   0.32   1
(EV130322) 0162435 Brassica napus Flower Brassica napus cDNA...    48   0.32   1
(CV870264) PDUts1077C05 Porcine testis cDNA library I Sus sc...    40   0.44   2
(AC168694) Strongylocentrotus purpuratus clone R3-3014H9, WO...    36   0.53   8
(EY795432) CR05-C3-701-031-A12-CT.F Mandarin fruit, developm...    42   0.56   2
(EY773754) CR05-C1-102-092-H05-CT.F Mandarin leaf, infected ...    40   0.57   2
(EY780974) CR05-C1-103-072-G09-CT.F Mandarin leaf, infected ...    40   0.57   2
(CV966924) PC014H03 infected tomato, center of lesion 3 dpi ...    38   0.58   2
(EY815014) PT11-C1-900-058-B03-CT.F Poncirus trifoliata leaf...    40   0.64   2
(DN790979) 90807331 Sea Urchin primary mesenchyme cell cDNA ...    40   0.65   2
(CC152314) CSU-K34.124M17.T7 CSU-K34 Aedes aegypti genomic c...    34   0.88   2
(EY896492) RR1ED53JQ RR1(CS) Raphanus raphanistrum subsp. ma...    36   0.88   2
(ER531170) 1093015752258 Global-Ocean-Sampling_GS-35-01-01-1...    36   0.89   2
(EX760637) RR2CI33JQ RR2(MS) Raphanus raphanistrum subsp. ra...    36   0.89   2
(CT626411) Danio rerio EST, clone ZF_mu_76h05 3'.                  38   1.2    2
(BX571947) Zebrafish DNA sequence from clone DKEY-162F21 in ...    46   1.2    1
(AC125222) Mus musculus BAC clone RP23-83G5 from 8, complete...    46   1.2    1
(AC108782) Mus musculus chromosome 8, clone RP23-350C11, com...    46   1.2    1
(FP089570) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.2    1
(AC169249) Bos taurus clone CH240-252H17, WORKING DRAFT SEQU...    46   1.2    1
(AC165450) Bos taurus clone CH240-327K3, WORKING DRAFT SEQUE...    46   1.2    1
(FI239826) CccaBb016-D13JF CccABb Cajanus cajan genomic clon...    46   1.2    1
(FI233925) CccaBb023-E6JR CccABb Cajanus cajan genomic clone...    46   1.2    1
(DE241120) Trifolium pratense DNA, clone:RCG44513.                 46   1.2    1
(ES429232) Plate_12b_A04 Hibernating 13-lined squirrel brain...    46   1.2    1
(DN791814) 90885461 Sea Urchin primary mesenchyme cell cDNA ...    46   1.2    1
(DN789961) 90820089 Sea Urchin primary mesenchyme cell cDNA ...    46   1.2    1
(DN784207) 92221527 Sea Urchin primary mesenchyme cell cDNA ...    46   1.2    1
(DC228196) Plasmodium berghei strain ANKA cDNA clone:SG01143...    46   1.2    1
(DC213411) Plasmodium berghei strain ANKA cDNA clone:MG01509...    46   1.2    1
(CV877151) PDUts1160G12 Porcine testis cDNA library I Sus sc...    46   1.2    1
(CT729188) Danio rerio EST, clone ZF_mu_262a16 3'.                 46   1.2    1
(CT682849) Danio rerio EST, clone ZF_mu_220o14 5'.                 46   1.2    1
(CT634406) Danio rerio EST, clone ZF_mu_86f14 3'.                  46   1.2    1
(CT628751) Danio rerio EST, clone ZF_mu_62i19 5'.                  46   1.2    1
(CT625779) Danio rerio EST, clone ZF_mu_61h05 3'.                  46   1.2    1
(CT622139) Danio rerio EST, clone ZF_mu_76m06 3'.                  46   1.2    1
(CT620026) Danio rerio EST, clone ZF_mu_77b17 5'.                  46   1.2    1
(CT585623) Danio rerio EST, clone ZF_mu_47g14 5'.                  46   1.2    1
(CT584076) Danio rerio EST, clone ZF_mu_48d01 3'.                  46   1.2    1
(CK415565) AUF_IpPit_32_p21 Pituitary cDNA library Ictalurus...    46   1.2    1
(CJ984179) Bursaphelenchus xylophilus cDNA clone: Bx_K1_63G0...    46   1.2    1
(CJ981002) Bursaphelenchus xylophilus cDNA clone: Bx_K1_27G0...    46   1.2    1
(CJ371521) Molgula tectiformis cDNA, gastrula/neurula clone:...    46   1.2    1
(CJ355265) Molgula tectiformis cDNA, cleaving embryo clone:m...    46   1.2    1
(BB975205) Plasmodium berghei str. ANKA cDNA clone: OK005027...    46   1.2    1
(BB974645) Plasmodium berghei str. ANKA cDNA clone: OK004457...    46   1.2    1
(BB973875) Plasmodium berghei str. ANKA cDNA clone: OK003664...    46   1.2    1
(BB973660) Plasmodium berghei str. ANKA cDNA clone: OK003443...    46   1.2    1
(BB973585) Plasmodium berghei str. ANKA cDNA clone: OK003368...    46   1.2    1
(BB973008) Plasmodium berghei str. ANKA cDNA clone: OK002740...    46   1.2    1
(BB972724) Plasmodium berghei str. ANKA cDNA clone: OK002451...    46   1.2    1
(FG632168) TOBESTR130F04 TOBEST cDNA library 1 Nicotiana tab...    46   1.2    1
(FC765020) CBBN1827.fwd CBBN Lottia gigantea 3,4,5,6.5d Larv...    46   1.2    1
(EY826214) PT11-C1-901-073-A03-CT.F Poncirus trifoliata leaf...    46   1.2    1
(EY825111) PT11-C1-901-072-F02-CT.F Poncirus trifoliata leaf...    46   1.2    1
(EY800575) CR05-C3-701-098-F02-CT.F Mandarin fruit, developm...    46   1.2    1
(EY797104) CR05-C3-701-048-G06-CT.F Mandarin fruit, developm...    46   1.2    1
(EY790927) CR05-C3-700-017-B07-CT.F Mandarin fruit, developm...    46   1.2    1
(EY782688) CR05-C1-103-092-G09-CT.F Mandarin leaf, infected ...    46   1.2    1
(EY781196) CR05-C1-103-076-E05-CT.F Mandarin leaf, infected ...    46   1.2    1
(EY777848) CR05-C1-103-037-G10-CT.F Mandarin leaf, infected ...    46   1.2    1
(EY776112) CR05-C1-103-012-A11-CT.F Mandarin leaf, infected ...    46   1.2    1
(EY775412) CR05-C1-103-003-G08-CT.F Mandarin leaf, infected ...    46   1.2    1
(EY774708) CR05-C1-102-100-E05-CT.F Mandarin leaf, infected ...    46   1.2    1
(EY773132) CR05-C1-102-075-E03-CT.F Mandarin leaf, infected ...    46   1.2    1
(EY753222) CS00-C5-003-083-C12-CT.F Sweet orange flower, gre...    46   1.2    1
(EY743819) CS00-C3-705-108-D06-CT.F Sweet orange fruit, deve...    46   1.2    1
(EY734382) CS00-C3-704-086-G09-CT.F Sweet orange fruit, deve...    46   1.2    1
(EY710752) CS00-C3-701-086-G06-CT.F Sweet orange fruit, deve...    46   1.2    1
(EY683699) CS00-C1-650-039-F04-CT.F Sweet orange leaf, young...    46   1.2    1
(EY667563) CS00-C1-102-033-H05-CT.F Sweet orange leaf, infec...    46   1.2    1
(EV203225) 0104378 Brassica napus Cold acclimation - light B...    46   1.2    1
(EV137646) 0203572 Brassica napus Very early anther Brassica...    46   1.2    1
(BB975772) Plasmodium berghei str. ANKA cDNA clone: OK005620...    38   1.3    2
(AC209194) Populus trichocarpa clone POP091-C08, complete se...    40   1.3    5
(BB975709) Plasmodium berghei str. ANKA cDNA clone: OK005554...    40   1.4    2
(BB975690) Plasmodium berghei str. ANKA cDNA clone: OK005535...    42   1.5    2
(DC217433) Plasmodium berghei strain ANKA cDNA clone:MG02033...    42   1.6    2
(CT641421) Danio rerio EST, clone ZF_mu_74a11 5'.                  38   1.6    2
(CJ352106) Molgula tectiformis cDNA, cleaving embryo clone:m...    42   1.7    2
(BB976286) Plasmodium berghei str. ANKA cDNA clone: OK006158...    38   1.8    2
(CT668095) Danio rerio EST, clone ZF_mu_152d10 3'.                 38   1.8    2
(CT634182) Danio rerio EST, clone ZF_mu_86k02 3'.                  38   1.8    2
(AC114121) Rattus norvegicus clone CH230-25F23, *** SEQUENCI...    36   1.9    4
(EJ590347) 1092961046168 Global-Ocean-Sampling_GS-29-01-01-1...    38   2.0    2
(CT601744) Danio rerio EST, clone ZF_mu_89o16 5'.                  38   2.0    2
(EY776936) CR05-C1-103-027-F09-CT.F Mandarin leaf, infected ...    38   2.0    2
(CT598062) Danio rerio EST, clone ZF_mu_89b12 3'.                  36   2.0    2
(EY851600) CG32-C1-003-005-A11-CT.F Mexican lime leaf, green...    38   2.1    2
(CV966922) PC014G12 infected tomato, center of lesion 3 dpi ...    42   2.1    2
(EY799225) CR05-C3-701-059-E02-CT.F Mandarin fruit, developm...    38   2.1    2
(EY775076) CR05-C1-102-098-H05-CT.F Mandarin leaf, infected ...    38   2.2    2
(EY741883) CS00-C3-705-002-F06-CT.F Sweet orange fruit, deve...    38   2.2    2
(EY781993) CR05-C1-103-084-F08-CT.F Mandarin leaf, infected ...    42   2.2    2
(DN782081) 90187235 Sea Urchin primary mesenchyme cell cDNA ...    42   2.2    2
(EY710093) CS00-C3-701-111-H01-CT.F Sweet orange fruit, deve...    40   2.3    2
(DN789970) 90879867 Sea Urchin primary mesenchyme cell cDNA ...    42   2.3    2
(DN783997) 94026053 Sea Urchin primary mesenchyme cell cDNA ...    40   2.3    2
(EY881218) LT33-C1-003-053-C04-CT.F Tahiti lime leaf, greenh...    38   2.3    2
(DN784061) 90169491 Sea Urchin primary mesenchyme cell cDNA ...    38   2.4    2
(DN791936) 90176885 Sea Urchin primary mesenchyme cell cDNA ...    42   2.4    2
(DN785133) 91575292 Sea Urchin primary mesenchyme cell cDNA ...    42   2.4    2
(DN782766) 90158319 Sea Urchin primary mesenchyme cell cDNA ...    38   2.4    2
(DV018157) CA8E07_T7 Diploptera punctata corpora allata cDNA...    42   2.7    2
(EY736435) CS00-C3-705-016-C09-CT.F Sweet orange fruit, deve...    34   3.3    2
(BI511797) BB160007A10F03.5 Bee Brain Normalized Library, BB...    32   3.3    2
(DW679104) EST002585 Trichophyton rubrum cDNA library 0 Tric...    40   3.6    2
(CJ353876) Molgula tectiformis cDNA, cleaving embryo clone:m...    30   3.7    3
(U36837) Lactococcus lactis plasmid pNP40, abortive infectio...    40   3.9    2
(CR925703) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   4.1    4
(AC148171) Medicago truncatula clone mth2-30a2, complete seq...    32   4.1    6
(BX927349) Zebrafish DNA sequence from clone DKEY-84K15 in l...    34   4.3    6
(FG632173) TOBESTR130F10 TOBEST cDNA library 1 Nicotiana tab...    40   4.6    2
(FG624750) TOBESTR040G08 TOBEST cDNA library 1 Nicotiana tab...    40   4.6    2
(DC233728) Plasmodium berghei strain ANKA cDNA clone:SG02854...    40   4.7    2
(CV432196) RT0251 Chinese cabbage root library Brassica rapa...    38   4.7    2
(BX629340) Zebrafish DNA sequence from clone DKEY-183O11 in ...    40   4.9    2
(AC186359) Gallus gallus BAC clone CH261-54F21 from chromoso...    44   4.9    1
(AC118684) Mus musculus chromosome 17, clone RP23-414B17, co...    44   4.9    1
(CR962130) Medicago truncatula chromosome 5 clone mte1-63h20...    44   4.9    1
(AC171134) Helobdella robusta clone CH306-1A5, complete sequ...    44   4.9    1
(AC093742) Homo sapiens BAC clone RP11-24M8 from 4, complete...    44   4.9    1
(CU984598) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.9    1
(CU928595) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.9    1
(EJ229652) 1092402566758 Global-Ocean-Sampling_GS-27-01-01-1...    44   4.9    1
(EI378759) POTBC34TF Solanum tuberosum RHPOTKEY BAC ends Sol...    44   4.9    1
(CZ400620) ZMMBF0182G17f ZMMBF Zea mays genomic clone ZMMBF0...    44   4.9    1
(CR022616) Forward strand read from insert in 5'HPRT inserti...    44   4.9    1
(EE993463) AUF_IpSpn_68_l14 Spleen cDNA library Ictalurus pu...    44   4.9    1
(DV774896) McClintock_45_E03.ab1 Homarus EST library project...    44   4.9    1
(DV774831) McClintock_27_E04.ab1 Homarus EST library project...    44   4.9    1
(DV774529) McClintock43_E05.ab1 Homarus EST library project ...    44   4.9    1
(DV774251) McClintock25_F02.ab1 Homarus EST library project ...    44   4.9    1
(DV017971) CA5F11_T7 Diploptera punctata corpora allata cDNA...    44   4.9    1
(DN790595) 90853947 Sea Urchin primary mesenchyme cell cDNA ...    44   4.9    1
(DN790594) 90985810 Sea Urchin primary mesenchyme cell cDNA ...    44   4.9    1
(DN786707) 90880221 Sea Urchin primary mesenchyme cell cDNA ...    44   4.9    1
(DN784725) 90936513 Sea Urchin primary mesenchyme cell cDNA ...    44   4.9    1
(DN784637) 90141906 Sea Urchin primary mesenchyme cell cDNA ...    44   4.9    1
(DN783084) 90206292 Sea Urchin primary mesenchyme cell cDNA ...    44   4.9    1
(DN782989) 91003587 Sea Urchin primary mesenchyme cell cDNA ...    44   4.9    1
(DK037057) Oryzias latipes cDNA, clone: olbr42o05, 3' end.         44   4.9    1
(DK025176) Oryzias latipes cDNA, clone: olbr8h22, 3' end.          44   4.9    1
(DC233112) Plasmodium berghei strain ANKA cDNA clone:SG02671...    44   4.9    1
(DC207472) Plasmodium berghei strain ANKA cDNA clone:MG00755...    44   4.9    1
(CX874665) JGI_CAAL11111.fwd NIH_XGC_tropBrn4 Xenopus (Silur...    44   4.9    1
(CX056461) PDUts2002H09 Porcine testis cDNA library II Sus s...    44   4.9    1
(CV967656) PC025E12 infected tomato, center of lesion 3 dpi ...    44   4.9    1
(CV967642) PC025D07 infected tomato, center of lesion 3 dpi ...    44   4.9    1
(CV874008) PDUts1121F11 Porcine testis cDNA library I Sus sc...    44   4.9    1
(CV873683) PDUts1117F08 Porcine testis cDNA library I Sus sc...    44   4.9    1
(CV871930) PDUts1097A02 Porcine testis cDNA library I Sus sc...    44   4.9    1
(CV871326) PDUts1090A10 Porcine testis cDNA library I Sus sc...    44   4.9    1
(CV870956) PDUts1085G01 Porcine testis cDNA library I Sus sc...    44   4.9    1
(CV869673) PDUts1069H11 Porcine testis cDNA library I Sus sc...    44   4.9    1
(CV868128) PDUts1051C03 Porcine testis cDNA library I Sus sc...    44   4.9    1
(CV866675) PDUts1033G05 Porcine testis cDNA library I Sus sc...    44   4.9    1
(CV865498) PDUts1018G06 Porcine testis cDNA library I Sus sc...    44   4.9    1
(CT735187) Danio rerio EST, clone ZF_mu_247m11 5'.                 44   4.9    1
(CT723479) Danio rerio EST, clone ZF_mu_247d13 5'.                 44   4.9    1
(CT698827) Danio rerio EST, clone ZF_mu_201m01 5'.                 44   4.9    1
(CT685102) Danio rerio EST, clone ZF_mu_282i07 3'.                 44   4.9    1
(CT678162) Danio rerio EST, clone ZF_mu_195d03 3'.                 44   4.9    1
(CT656747) Danio rerio EST, clone ZF_mu_143k09 3'.                 44   4.9    1
(CT653885) Danio rerio EST, clone ZF_mu_132c21 3'.                 44   4.9    1
(CT637813) Danio rerio EST, clone ZF_mu_76p02 3'.                  44   4.9    1
(CT632974) Danio rerio EST, clone ZF_mu_92k20 5'.                  44   4.9    1
(CT630501) Danio rerio EST, clone ZF_mu_78d16 3'.                  44   4.9    1
(CT629463) Danio rerio EST, clone ZF_mu_76m11 3'.                  44   4.9    1
(CT628161) Danio rerio EST, clone ZF_mu_63a18 3'.                  44   4.9    1
(CT622556) Danio rerio EST, clone ZF_mu_61c20 5'.                  44   4.9    1
(CT622444) Danio rerio EST, clone ZF_mu_84c02 5'.                  44   4.9    1
(CT583868) Danio rerio EST, clone ZF_mu_47j20 5'.                  44   4.9    1
(CO968425) BeE90N19H01 BeE90N Blastocladiella emersonii cDNA...    44   4.9    1
(CJ374287) Molgula tectiformis cDNA, gastrula/neurula clone:...    44   4.9    1
(CJ371706) Molgula tectiformis cDNA, gastrula/neurula clone:...    44   4.9    1
(CJ355639) Molgula tectiformis cDNA, cleaving embryo clone:m...    44   4.9    1
(CI999303) Marsupenaeus japonicus cDNA, clone:YAQ02A01NGRM00...    44   4.9    1
(AL042866) Homo sapiens mRNA; EST DKFZp434H0522_r1  (from cl...    44   4.9    1
(CF874669) tric007xb17.b11 T.reesei mycelial culture, Versio...    44   4.9    1
(CF873291) tric005xk10.b11 T.reesei mycelial culture, Versio...    44   4.9    1
(CF873160) tric004xj19.b11 T.reesei mycelial culture, Versio...    44   4.9    1
(CF605928) RADIC01_001720 Grape Root pSPORT1 Library Vitis v...    44   4.9    1
(CF605729) RADIC01_001468 Grape Root pSPORT1 Library Vitis v...    44   4.9    1
(CF338183) JMT--08-P01.b1 AtJMT-overexpressing transgenic ri...    44   4.9    1
(CF338147) JMT--08-O06.b1 AtJMT-overexpressing transgenic ri...    44   4.9    1
(CF338082) JMT--08-M18.b1 AtJMT-overexpressing transgenic ri...    44   4.9    1
(CF338032) JMT--08-L14.b1 AtJMT-overexpressing transgenic ri...    44   4.9    1
(CF337976) JMT--08-K08.b1 AtJMT-overexpressing transgenic ri...    44   4.9    1
(CF337972) JMT--08-K06.b1 AtJMT-overexpressing transgenic ri...    44   4.9    1
(CF337904) JMT--08-I18.b1 AtJMT-overexpressing transgenic ri...    44   4.9    1
(CF337838) JMT--08-H06.b1 AtJMT-overexpressing transgenic ri...    44   4.9    1
(CF337764) JMT--08-F14.b1 AtJMT-overexpressing transgenic ri...    44   4.9    1
(CF337687) JMT--08-D22.b1 AtJMT-overexpressing transgenic ri...    44   4.9    1
(CF337587) JMT--08-B15.b1 AtJMT-overexpressing transgenic ri...    44   4.9    1
(CF334355) JMT--03-J23.b1 AtJMT-overexpressing transgenic ri...    44   4.9    1
(CD203443) Ls_AM1_08F07_T7 Litomosoides sigmodontis adult ma...    44   4.9    1
(CA301199) SCCCLV1C04H07.g LV1 Saccharum officinarum cDNA cl...    44   4.9    1
(CA183203) SCQGST3122C03.g ST3 Saccharum officinarum cDNA cl...    44   4.9    1
(BP507368) Hydra magnipapillata cDNA, clone:hmp_00773.             44   4.9    1
(BJ748697) Oryzias latipes cDNA clone:MF015DA034c10, 3' end.       44   4.9    1
(BJ541908) Oryzias latipes cDNA clone:MF01SSB036E18, 3' end ...    44   4.9    1
(BI343418) 371561 MARC 2PIG Sus scrofa cDNA 5', mRNA sequence.     44   4.9    1
(BB977912) Plasmodium berghei str. ANKA cDNA clone: OK007911...    44   4.9    1
(BB975750) Plasmodium berghei str. ANKA cDNA clone: OK005598...    44   4.9    1
(BB975679) Plasmodium berghei str. ANKA cDNA clone: OK005523...    44   4.9    1
(BB975498) Plasmodium berghei str. ANKA cDNA clone: OK005330...    44   4.9    1
(BB975197) Plasmodium berghei str. ANKA cDNA clone: OK005019...    44   4.9    1
(BB974453) Plasmodium berghei str. ANKA cDNA clone: OK004259...    44   4.9    1
(BB974323) Plasmodium berghei str. ANKA cDNA clone: OK004125...    44   4.9    1
(BB973811) Plasmodium berghei str. ANKA cDNA clone: OK003598...    44   4.9    1
(BB973508) Plasmodium berghei str. ANKA cDNA clone: OK003290...    44   4.9    1
(BB973241) Plasmodium berghei str. ANKA cDNA clone: OK003016...    44   4.9    1
(BB973105) Plasmodium berghei str. ANKA cDNA clone: OK002839...    44   4.9    1
(FG631545) TOBESTR120C12 TOBEST cDNA library 1 Nicotiana tab...    44   4.9    1
(FG629160) TOBESTR092H02 TOBEST cDNA library 1 Nicotiana tab...    44   4.9    1
(FD873309) CBHO17116.fwd CBHO Volvox carteri f. nagariensis ...    44   4.9    1
(FC755364) CBBI8671.fwd CBBI Lottia gigantea 26h,37h,61h Lar...    44   4.9    1
(EY887685) TS27-C2-300-019-H07-CT.F Sunki mandarin bark, gre...    44   4.9    1
(EY878470) LT33-C1-003-029-A05-CT.F Tahiti lime leaf, greenh...    44   4.9    1
(EY878013) CL06-C4-501-074-C01-CT.F Rangpur lime root, plant...    44   4.9    1
(EY876607) CL06-C4-501-055-B02-CT.F Rangpur lime root, plant...    44   4.9    1
(EY876249) CL06-C4-501-048-H03-CT.F Rangpur lime root, plant...    44   4.9    1
(EY869472) CL06-C4-500-028-H11-CT.F Rangpur lime root, green...    44   4.9    1
(EY848649) CA26-C1-002-082-A05-CT.F Sour orange leaf, field ...    44   4.9    1
(EY841189) PT11-C9-005-036-F05-CT.F Poncirus trifoliata seed...    44   4.9    1
(EY824494) PT11-C1-901-066-G06-CT.F Poncirus trifoliata leaf...    44   4.9    1
(EY824086) PT11-C1-901-060-B05-CT.F Poncirus trifoliata leaf...    44   4.9    1
(EY817495) PT11-C1-900-088-B05-CT.F Poncirus trifoliata leaf...    44   4.9    1
(EY816300) PT11-C1-900-068-F11-CT.F Poncirus trifoliata leaf...    44   4.9    1
(EY800818) CR05-C3-701-043-G03-CT.F Mandarin fruit, developm...    44   4.9    1
(EY798722) CR05-C3-701-067-H11-CT.F Mandarin fruit, developm...    44   4.9    1
(EY798485) CR05-C3-701-066-C09-CT.F Mandarin fruit, developm...    44   4.9    1
(EY797315) CR05-C3-701-051-B04-CT.F Mandarin fruit, developm...    44   4.9    1
(EY794574) CR05-C3-701-021-E11-CT.F Mandarin fruit, developm...    44   4.9    1
(EY793947) CR05-C3-701-012-D12-CT.F Mandarin fruit, developm...    44   4.9    1
(EY793507) CR05-C3-701-007-E01-CT.F Mandarin fruit, developm...    44   4.9    1
(EY793492) CR05-C3-701-007-C10-CT.F Mandarin fruit, developm...    44   4.9    1
(EY782253) CR05-C1-103-087-H06-CT.F Mandarin leaf, infected ...    44   4.9    1
(EY782076) CR05-C1-103-085-G01-CT.F Mandarin leaf, infected ...    44   4.9    1
(EY780439) CR05-C1-103-070-H05-CT.F Mandarin leaf, infected ...    44   4.9    1
(EY779497) CR05-C1-103-052-B12-CT.F Mandarin leaf, infected ...    44   4.9    1
(EY753159) CS00-C5-003-055-F07-CT.F Sweet orange flower, gre...    44   4.9    1
(EY742958) CS00-C3-705-097-D09-CT.F Sweet orange fruit, deve...    44   4.9    1
(EY725961) CS00-C3-703-042-E09-CT.F Sweet orange fruit, deve...    44   4.9    1
(EY710709) CS00-C3-701-086-C10-CT.F Sweet orange fruit, deve...    44   4.9    1
(EY710257) CS00-C3-701-091-G07-CT.F Sweet orange fruit, deve...    44   4.9    1
(EY698735) CS00-C3-700-075-C03-CT.F Sweet orange fruit, deve...    44   4.9    1
(EY679553) CS00-C1-401-052-E03-CT.F Sweet orange leaf, infec...    44   4.9    1
(EY675828) CS00-C1-401-015-E09-CT.F Sweet orange leaf, infec...    44   4.9    1
(EY667094) CS00-C1-102-028-B01-CT.F Sweet orange leaf, infec...    44   4.9    1
(EY658496) CS00-C1-100-128-A08-CT.F Sweet orange leaf, green...    44   4.9    1
(EY657815) CS00-C1-100-136-D06-CT.F Sweet orange leaf, green...    44   4.9    1
(EY657665) CS00-C1-100-126-F03-CT.F Sweet orange leaf, green...    44   4.9    1
(EX833338) CBNB3949.fwd CBNB Phycomyces blakesleeanus NRRL15...    44   4.9    1
(EV225248) 0107174 Brassica napus Damaged cotyledons Brassic...    44   4.9    1
(EV203231) 0104384 Brassica napus Cold acclimation - light B...    44   4.9    1
(EV193736) 0091221 Brassica napus Cold acclimation - dark Br...    44   4.9    1
(EV192837) 0090319 Brassica napus Cold acclimation - dark Br...    44   4.9    1
(EV191492) 0088973 Brassica napus Cold acclimation - dark Br...    44   4.9    1
(EV141434) 0207365 Brassica napus Very early anther Brassica...    44   4.9    1
(EV139697) 0205623 Brassica napus Very early anther Brassica...    44   4.9    1
(EV103988) 0095680 Brassica napus Leaf library Brassica napu...    44   4.9    1
(EV102982) 0095305 Brassica napus Leaf library Brassica napu...    44   4.9    1
(FI422170) CH322-152E17.y CHORI-322 Drosophila melanogaster ...    38   5.1    2
(BB975668) Plasmodium berghei str. ANKA cDNA clone: OK005511...    40   5.2    2
(BB973235) Plasmodium berghei str. ANKA cDNA clone: OK003010...    40   5.2    2
(BP507338) Hydra magnipapillata cDNA, clone:hmp_00494.             40   5.3    2
(BB973032) Plasmodium berghei str. ANKA cDNA clone: OK002765...    38   5.3    2
(CV432224) RT0297 Chinese cabbage root library Brassica rapa...    38   5.4    2
(AC162031) Medicago truncatula chromosome 8 clone mth2-194a2...    36   5.6    3
(BB972923) Plasmodium berghei str. ANKA cDNA clone: OK002652...    40   5.7    2
(CV876185) PDUts1148H05 Porcine testis cDNA library I Sus sc...    40   5.8    2
(CV867294) PDUts1041C07 Porcine testis cDNA library I Sus sc...    38   5.9    2
(CR790374) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   5.9    4
(AC188579) Gallus gallus BAC clone CH261-132G22 from chromos...    38   6.0    5
(FE233321) CAPG2223.fwd CAPG Naegleria gruberi amoeba stage ...    32   6.0    3
(CJ351626) Molgula tectiformis cDNA, cleaving embryo clone:m...    38   6.1    2
(CA502264) WHE4045_A11_A21ZT Wheat meiotic anther cDNA libra...    38   6.1    2
(AC229830) Monodelphis domestica clone VMRC18-620L2, WORKING...    36   6.1    3
(CJ352137) Molgula tectiformis cDNA, cleaving embryo clone:m...    40   6.2    2
(AC146681) Medicago truncatula clone mth2-77o10, complete se...    34   6.3    5
(DC230659) Plasmodium berghei strain ANKA cDNA clone:SG01935...    40   6.4    2
(EJ778062) 1093011121072 Global-Ocean-Sampling_GS-30-02-01-1...    36   6.5    2
(CJ354393) Molgula tectiformis cDNA, cleaving embryo clone:m...    38   6.5    2
(ES429956) Plate_23b_G10 Hibernating 13-lined squirrel brain...    38   6.6    2
(CT614707) Danio rerio EST, clone ZF_mu_79l18 3'.                  40   6.6    2
(FH348998) CHO_OF4653xc01f1.ab1 CHO_OF4 Nicotiana tabacum ge...    36   6.6    2
(CT726931) Danio rerio EST, clone ZF_mu_236k07 3'.                 40   6.7    2
(EV104819) 0110131 Brassica napus Senescent leaves Brassica ...    40   6.7    2
(AC111282) Rattus norvegicus clone CH230-53L17, *** SEQUENCI...    36   6.8    4
(EK072719) 1092961004807 Global-Ocean-Sampling_GS-31-01-01-1...    38   6.9    2
(FC834925) CBHI5850.fwd CBHI Metridium senile tentacle Metri...    34   7.0    2
(BG784964) SEAUMC004921 Sea urchin primary mesenchyme cell c...    40   7.1    2
(BG786233) SEAUMC006190 Sea urchin primary mesenchyme cell c...    40   7.3    2
(FC836257) CBHI6568.fwd CBHI Metridium senile tentacle Metri...    34   7.5    2
(CT715288) Danio rerio EST, clone ZF_mu_267b14 5'.                 40   7.5    2
(CT665188) Danio rerio EST, clone ZF_mu_142f21 3'.                 40   7.6    2
(AC224322) Bos taurus clone CH240-489B23, WORKING DRAFT SEQU...    36   7.6    4
(CT628007) Danio rerio EST, clone ZF_mu_90f16 5'.                  38   7.6    2
(CJ982932) Bursaphelenchus xylophilus cDNA clone: Bx_K1_49G1...    36   7.8    2
(EY826271) PT11-C1-901-073-F01-CT.F Poncirus trifoliata leaf...    38   7.8    2
(DN786366) 90167298 Sea Urchin primary mesenchyme cell cDNA ...    38   7.9    2
(EJ764932) 1092963190726 Global-Ocean-Sampling_GS-30-02-01-1...    36   7.9    2
(EY783055) CR05-C1-103-096-H10-CT.F Mandarin leaf, infected ...    38   8.0    2
(CV966713) PC011G02 infected tomato, center of lesion 3 dpi ...    40   8.0    2
(CT600547) Danio rerio EST, clone ZF_mu_89i05 3'.                  36   8.0    2
(EY679069) CS00-C1-401-054-G12-CT.F Sweet orange leaf, infec...    40   8.0    2
(EY673918) CS00-C1-102-004-G01-CT.F Sweet orange leaf, infec...    38   8.4    2
(DN792017) 90881534 Sea Urchin primary mesenchyme cell cDNA ...    40   8.4    2
(EY774070) CR05-C1-102-088-A04-CT.F Mandarin leaf, infected ...    40   8.4    2
(EY852522) CG32-C1-003-023-C02-CT.F Mexican lime leaf, green...    38   8.4    2
(DN788184) 90954358 Sea Urchin primary mesenchyme cell cDNA ...    40   8.5    2
(DN784816) 91035595 Sea Urchin primary mesenchyme cell cDNA ...    38   8.5    2
(CK417034) AUF_IpInt_55_e16 Intestine cDNA library Ictalurus...    40   8.5    2
(CU861893) Zebrafish DNA sequence from clone CH73-168D12.          42   8.5    2
(DN783561) 90258709 Sea Urchin primary mesenchyme cell cDNA ...    38   8.6    2
(DN782115) 90162144 Sea Urchin primary mesenchyme cell cDNA ...    40   8.7    2
(DN783115) 90185310 Sea Urchin primary mesenchyme cell cDNA ...    38   8.7    2
(DN782670) 90196218 Sea Urchin primary mesenchyme cell cDNA ...    38   8.7    2
(DV018118) CA7H09_T7 Diploptera punctata corpora allata cDNA...    40   8.7    2
(EY710438) CS00-C3-701-115-C01-CT.F Sweet orange fruit, deve...    40   8.8    2
(AC131301) Mus musculus chromosome 14, clone RP24-70B5, comp...    30   8.8    2
(DN790843) 90871740 Sea Urchin primary mesenchyme cell cDNA ...    40   8.8    2
(DN565886) 90962201 Sea Urchin primary mesenchyme cell cDNA ...    36   8.8    2
(AC107670) Mus musculus chromosome 14, clone RP23-54K15, com...    30   8.9    2
(DV018022) CA6E03_T7 Diploptera punctata corpora allata cDNA...    40   9.0    2
(DN791880) 90187884 Sea Urchin primary mesenchyme cell cDNA ...    40   9.1    2
(BB979690) Plasmodium berghei str. ANKA cDNA clone: OK009794...    38   9.4    2
(EY657718) CS00-C1-100-095-C01-CT.F Sweet orange leaf, green...    40   9.4    2
(EY743939) CS00-C3-705-104-G10-CT.F Sweet orange fruit, deve...    40   9.4    2
(EY789106) CR05-C3-700-029-G09-CT.F Mandarin fruit, developm...    38   9.6    2
(EY816469) PT11-C1-900-077-F12-CT.F Poncirus trifoliata leaf...    38   9.6    2

>(AU269026) Dictyostelium discoideum vegetative cDNA clone:VSI651,
           5' end single read.
          Length = 453

 Score =  805 bits (406), Expect = 0.0
 Identities = 406/406 (100%)
 Strand = Plus / Plus


Query: 1   cccccctcgggtcgaccccgcgtccgataataaaatggcatcaaaacttggatttgttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cccccctcgggtcgaccccgcgtccgataataaaatggcatcaaaacttggatttgttca 60


Query: 61  tcaagctacacaaaatgttttatttaaacaaccacgtttctatttagaggcttcatcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcaagctacacaaaatgttttatttaaacaaccacgtttctatttagaggcttcatcaaa 120


Query: 121 aggtcaatttgctgattcaattgttgatttgtcaggtattcaacgttggaataatgatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aggtcaatttgctgattcaattgttgatttgtcaggtattcaacgttggaataatgatag 180


Query: 181 aagtaaaataggtaatcaattttcaaatagattcgttaaaccatcacgtgttaaattttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagtaaaataggtaatcaattttcaaatagattcgttaaaccatcacgtgttaaattttt 240


Query: 241 aagaaagaaacaagttcaaaaatataaatgggatcactttgtttatgatgtttgtaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aagaaagaaacaagttcaaaaatataaatgggatcactttgtttatgatgtttgtaaaaa 300


Query: 301 ttatgaatttattagagaaaatgcaagagaaatttcaagagaaccaaacagattagcaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttatgaatttattagagaaaatgcaagagaaatttcaagagaaccaaacagattagcaaa 360


Query: 361 aattgaaagagcaaattcatggttaggtgattatcatcaataaccc 406
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aattgaaagagcaaattcatggttaggtgattatcatcaataaccc 406

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 623,786,929
Number of extensions: 39208271
Number of successful extensions: 3296159
Number of sequences better than 10.0: 406
Length of query: 480
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 457
Effective length of database: 102,190,702,835
Effective search space: 46701151195595
Effective search space used: 46701151195595
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 8. 1
Homology vs Protein 
Query= Contig-U05312-1 (Contig-U05312-1Q) /CSM_Contig/Contig-U05312-1Q.Seq.d
         (480 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK070860_1(AK070860|pid:none) Oryza sativa Japonica Group cDNA c...    35   0.67
CP001287_2726(CP001287|pid:none) Cyanothece sp. PCC 8801, comple...    35   0.67
AB037851_1(AB037851|pid:none) Homo sapiens mRNA for KIAA1430 pro...    34   1.5
BC030535_1(BC030535|pid:none) Homo sapiens KIAA1430, mRNA (cDNA ...    34   1.5
AJ000864_2(AJ000864|pid:none) Streptococcus anginosus comC, comD...    34   1.5
AC093592_1(AC093592|pid:none) Homo sapiens BAC clone RP11-50L21 ...    34   1.5
AL133615_1(AL133615|pid:none) Homo sapiens mRNA; cDNA DKFZp434F1...    34   1.5
FM992688_868(FM992688|pid:none) Candida dubliniensis CD36 chromo...    34   1.9
AK129358_1(AK129358|pid:none) Mus musculus mRNA for mKIAA1430 pr...    33   3.3
(Q6ZPR1) RecName: Full=UPF0501 protein KIAA1430;  &AK016776_1(AK...    33   3.3
CR940347_754(CR940347|pid:none) Theileria annulata strain Ankara...    33   4.3
CP000553_655(CP000553|pid:none) Prochlorococcus marinus str. NAT...    33   4.3
(Q66H34) RecName: Full=UPF0501 protein KIAA1430 homolog;  &BC082...    32   5.7
CU633438_126(CU633438|pid:none) Podospora anserina genomic DNA c...    32   7.4
EU970698_1(EU970698|pid:none) Zea mays clone 349090 hypothetical...    32   9.6
CP000095_639(CP000095|pid:none) Prochlorococcus marinus str. NAT...    32   9.6

>AK070860_1(AK070860|pid:none) Oryza sativa Japonica Group cDNA
           clone:J023067K03, full insert sequence.
           &AP004049_8(AP004049|pid:none)
           &AP006720_9(AP006720|pid:none)
           &AP008208_37(AP008208|pid:none)
          Length = 279

 Score = 35.4 bits (80), Expect = 0.67
 Identities = 30/98 (30%), Positives = 41/98 (41%)
 Frame = +2

Query: 77  VLFKQPRFYLEASSKGQFADSIVDLSGIQRWNNDRSKIGNQFSNRFVKPSRVKFLRKKQV 256
           VLFK+PR YL    +  F      LSGIQ   N   +  N  SN   K        +K+
Sbjct: 142 VLFKRPRSYLIQRVRRIFVSKETLLSGIQAGVNHMRQTVNLVSNESQKLLDRAATAEKRF 201

Query: 257 QKYKWDHFVYDVCKNYEFIRENAREISREPNRLAKIER 370
           Q            K +  +RE  R I  E N+++ IE+
Sbjct: 202 Q------------KGWNTLREEGRAIQSELNQISDIEK 227

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 673,705,782
Number of extensions: 12073994
Number of successful extensions: 26628
Number of sequences better than 10.0: 16
Number of HSP's gapped: 26613
Number of HSP's successfully gapped: 16
Length of query: 160
Length of database: 1,061,185,681
Length adjustment: 118
Effective length of query: 42
Effective length of database: 675,508,817
Effective search space: 28371370314
Effective search space used: 28371370314
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.83  gvh: 0.48  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  8.0 %: peroxisomal

>> prediction for Contig-U05312-1 is nuc
VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0