Contig-U05309-1
Contig ID Contig-U05309-1
Contig update 2001. 8.29
Contig sequence
>Contig-U05309-1 (Contig-U05309-1Q) /CSM_Contig/Contig-U05309-1Q.Seq.d
AAAATAAAAATAAAGAGTTATAATTCATTTTTATATCTTGTAAAAATTTA
ATACTGTATTTTAATAACAATAATAAAAAAAAAAAAAAAAAAAAAAAAAA
ATAAATAAAATGTATCAACCANGAATTAATAATAACTATATATTATATCC
AACATCACCACCATTATTAAGTGAATGTTTTAGTGTTAGTTATCCACCTC
CACCATTTTTAAATTGTAATAATAATAGTAATAATAGTTCACCGATAAAT
TCACCAAAAAGTTTCAATAATAATAATCATAGTAGTAATAATTTTAATAT
TACAAATGTAAACAATTTTTATTTTAATAATAATTTAAATAATAGTGGTA
GTGGTAGTACTAGTAGTGGTGGTAATAGTGGTACACCACCATCACCAATT
CAAATACCAATAATTTGTACAACAACTATAATAGTTAACCAATCATCTCC
ACAACCATTACCAATTCAATATCCACAAATTCAATTNGAAAAATTTAATT
TATCACCAAATTCCAATTTATCAAATCAATTAAGCGATCATTTTAATAAC
AATAATAATAACCATCAAAAAAAGAAACATAGATTATCTTGGAAAGAAAT
TAAAAAAGATTTTAATATTAAACATGAAAAAAAAAAAAAAAAAAAAAAA

Gap no gap
Contig length 649
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 3576168
End point 3576817
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05309
List of clone(s)

est1=SSH130E,1,650
Translated Amino Acid sequence
k*k*rviihfyil*kfntvf**q**KKKKKKKKINKMYQPXINNNYILYPTSPPLLSECF
SVSYPPPPFLNCNNNSNNSSPINSPKSFNNNNHSSNNFNITNVNNFYFNNNLNNSGSGST
SSGGNSGTPPSPIQIPIICTTTIIVNQSSPQPLPIQYPQIQXEKFNLSPNSNLSNQLSDH
FNNNNNNHQKKKHRLSWKEIKKDFNIKHEKKKKKKK


Translated Amino Acid sequence (All Frames)
Frame A:
kikiksynsflylvki*ycilitiikkkkkkkknk*nvstxn***lyiisnittiik*mf
*c*lststifkl*******ftdkftkkfq***s****f*yykckqflf***fk**w*w*y
**ww**wyttitnsntnnlynnyns*piisttitnsistnsixki*fitkfqfiksikrs
f**q***pskket*iilern*krf*y*t*kkkkkkk


Frame B:
k*k*rviihfyil*kfntvf**q**KKKKKKKKINKMYQPXINNNYILYPTSPPLLSECF
SVSYPPPPFLNCNNNSNNSSPINSPKSFNNNNHSSNNFNITNVNNFYFNNNLNNSGSGST
SSGGNSGTPPSPIQIPIICTTTIIVNQSSPQPLPIQYPQIQXEKFNLSPNSNLSNQLSDH
FNNNNNNHQKKKHRLSWKEIKKDFNIKHEKKKKKKK


Frame C:
nknkel*fifiscknlilyfnnnnkkkkkkkkk*ikcinxeliitiyyiqhhhhy*vnvl
vlvihlhhf*iviiiviivhr*ihqkvsiiiiivviililqm*tifiliii*iivvvvvl
vvvvivvhhhhqfkyq*fvqql**ltnhlhnhyqfnihkfnxknliyhqipiyqin*aii
litiiitikkrnidylgkklkkililnmkkkkkkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05309-1 (Contig-U05309-1Q)
/CSM_Contig/Contig-U05309-1Q.Seq.d
(649 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05309-1 (Contig-U05309-1Q) /CSM_Contig/Conti... 511 e-145
Contig-U09112-1 (Contig-U09112-1Q) /CSM_Contig/Conti... 50 3e-06
Contig-U14896-1 (Contig-U14896-1Q) /CSM_Contig/Conti... 48 1e-05
Contig-U12753-1 (Contig-U12753-1Q) /CSM_Contig/Conti... 46 5e-05
Contig-U11154-1 (Contig-U11154-1Q) /CSM_Contig/Conti... 46 5e-05
Contig-U06094-1 (Contig-U06094-1Q) /CSM_Contig/Conti... 46 5e-05
Contig-U12569-1 (Contig-U12569-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U11414-1 (Contig-U11414-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U09429-1 (Contig-U09429-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U09161-1 (Contig-U09161-1Q) /CSM_Contig/Conti... 44 2e-04

>Contig-U05309-1 (Contig-U05309-1Q) /CSM_Contig/Contig-U05309-1Q.Seq.d
Length = 649

Score = 511 bits (258), Expect = e-145
Identities = 275/282 (97%)
Strand = Plus / Plus


Query: 345 gtggtagtggtagtactagtagtggtggtaatagtggtacaccaccatcaccaattcaaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gtggtagtggtagtactagtagtggtggtaatagtggtacaccaccatcaccaattcaaa 404


Query: 405 taccaataatttgtacaacaactataatagttaaccaatcatctccacaaccattaccaa 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 taccaataatttgtacaacaactataatagttaaccaatcatctccacaaccattaccaa 464


Query: 465 ttcaatatccacaaattcaattngaaaaatttaatttatcaccaaattccaatttatcaa 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttcaatatccacaaattcaattngaaaaatttaatttatcaccaaattccaatttatcaa 524


Query: 525 atcaattaagcgatcattttaataacaataataataaccatcnnnnnnngaaacatagat 584
|||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 525 atcaattaagcgatcattttaataacaataataataaccatcaaaaaaagaaacatagat 584


Query: 585 tatcttggaaagaaattaaaaaagattttaatattaaacatg 626
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tatcttggaaagaaattaaaaaagattttaatattaaacatg 626


Score = 365 bits (184), Expect = e-101
Identities = 187/187 (100%)
Strand = Plus / Plus


Query: 102 taaataaaatgtatcaaccangaattaataataactatatattatatccaacatcaccac 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 taaataaaatgtatcaaccangaattaataataactatatattatatccaacatcaccac 161


Query: 162 cattattaagtgaatgttttagtgttagttatccacctccaccatttttaaattgtaata 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cattattaagtgaatgttttagtgttagttatccacctccaccatttttaaattgtaata 221


Query: 222 ataatagtaataatagttcaccgataaattcaccaaaaagtttcaataataataatcata 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ataatagtaataatagttcaccgataaattcaccaaaaagtttcaataataataatcata 281


Query: 282 gtagtaa 288
|||||||
Sbjct: 282 gtagtaa 288


Score = 147 bits (74), Expect = 2e-35
Identities = 74/74 (100%)
Strand = Plus / Plus


Query: 1 aaaataaaaataaagagttataattcatttttatatcttgtaaaaatttaatactgtatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaataaaaataaagagttataattcatttttatatcttgtaaaaatttaatactgtatt 60


Query: 61 ttaataacaataat 74
||||||||||||||
Sbjct: 61 ttaataacaataat 74


Score = 38.2 bits (19), Expect = 0.011
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 540 attttaataacaataataa 558
|||||||||||||||||||
Sbjct: 58 attttaataacaataataa 76


Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 58 attttaataacaataat 74
|||||||||||||||||
Sbjct: 540 attttaataacaataat 556


>Contig-U09112-1 (Contig-U09112-1Q) /CSM_Contig/Contig-U09112-1Q.Seq.d
Length = 1091

Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus


Query: 210 taaattgtaataataatagtaataatagt 238
||||| |||||||||||||||||||||||
Sbjct: 118 taaatagtaataataatagtaataatagt 146


Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 220 taataatagtaataata 236
|||||||||||||||||
Sbjct: 137 taataatagtaataata 153


>Contig-U14896-1 (Contig-U14896-1Q) /CSM_Contig/Contig-U14896-1Q.Seq.d
Length = 846

Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus


Query: 209 ttaaattgtaataataatagtaataata 236
||||||| ||||||||||||||||||||
Sbjct: 643 ttaaattttaataataatagtaataata 670


Score = 34.2 bits (17), Expect = 0.18
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 545 aataacaataataataa 561
|||||||||||||||||
Sbjct: 418 aataacaataataataa 434


Score = 32.2 bits (16), Expect = 0.71
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 217 taataataatagtaataata 236
||||||||||| ||||||||
Sbjct: 726 taataataataataataata 745


Score = 32.2 bits (16), Expect = 0.71
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 217 taataataatagtaataata 236
||||||||||| ||||||||
Sbjct: 723 taataataataataataata 742


Score = 32.2 bits (16), Expect = 0.71
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 217 taataataatagtaataata 236
||||||||||| ||||||||
Sbjct: 708 taataataataataataata 727


Score = 32.2 bits (16), Expect = 0.71
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 217 taataataatagtaataata 236
||||||||||| ||||||||
Sbjct: 711 taataataataataataata 730


Score = 32.2 bits (16), Expect = 0.71
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 217 taataataatagtaataata 236
||||||||||| ||||||||
Sbjct: 720 taataataataataataata 739


Score = 32.2 bits (16), Expect = 0.71
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 217 taataataatagtaataata 236
||||||||||| ||||||||
Sbjct: 714 taataataataataataata 733


Score = 32.2 bits (16), Expect = 0.71
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 217 taataataatagtaataata 236
||||||||||| ||||||||
Sbjct: 705 taataataataataataata 724


Score = 32.2 bits (16), Expect = 0.71
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 217 taataataatagtaataata 236
||||||||||| ||||||||
Sbjct: 729 taataataataataataata 748


Score = 32.2 bits (16), Expect = 0.71
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 217 taataataatagtaataata 236
||||||||||| ||||||||
Sbjct: 717 taataataataataataata 736


Score = 32.2 bits (16), Expect = 0.71
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 217 taataataatagtaataata 236
|||||||||||| |||||||
Sbjct: 426 taataataatagaaataata 445


Score = 32.2 bits (16), Expect = 0.71
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 217 taataataatagtaataata 236
||||||||||| ||||||||
Sbjct: 702 taataataataataataata 721


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 53,071
Number of Sequences: 6905
Number of extensions: 53071
Number of successful extensions: 15762
Number of sequences better than 10.0: 1496
length of query: 649
length of database: 5,674,871
effective HSP length: 16
effective length of query: 633
effective length of database: 5,564,391
effective search space: 3522259503
effective search space used: 3522259503
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7.18
Homology vs DNA
Query= Contig-U05309-1 (Contig-U05309-1Q) /CSM_Contig/Contig-U05309-1Q.Seq.d
(649 letters)

Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU037989) Dictyostelium discoideum slug cDNA, clone SSH130. 357 e-149 2
(AU073410) Dictyostelium discoideum slug cDNA, clone SSH130. 147 1e-41 2
(AP008009) Lotus japonicus genomic DNA, chromosome 1, clone:... 56 0.002 1
(AG221208) Lotus japonicus DNA, clone:LjB05a18_r. 56 0.002 1
(AC006281) Plasmodium falciparum chromosome 12 clone PFYACB8... 36 0.003 7
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 40 0.010 5
(AM451119) Vitis vinifera contig VV78X178802.5, whole genome... 36 0.011 4
(AC116922) Dictyostelium discoideum chromosome 2 map 6061442... 38 0.037 5
(AU263397) Dictyostelium discoideum vegetative cDNA clone:VS... 42 0.043 3
(CT795364) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 0.049 2
(CT806015) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 0.050 2
(CT737443) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 0.057 2
(CT777166) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 0.070 2
(CT454204) Sus scrofa genomic clone CH242-449L14, genomic su... 44 0.073 2
(BJ424659) Dictyostelium discoideum cDNA clone:ddv53k05, 5' ... 36 0.099 3
(AC005506) Plasmodium falciparum chromosome 12 clone PFYAC35... 32 0.10 8
(AU086958) Plasmodium falciparum 3D7 cDNA clone from Sugano ... 38 0.13 3
(FP016231) Zebrafish DNA sequence from clone CH73-231O20. 36 0.21 4
(AM426622) Vitis vinifera contig VV78X173152.14, whole genom... 42 0.24 4
(AC169536) Bos taurus clone CH240-225F10, WORKING DRAFT SEQU... 38 0.25 7
(DU942074) 370701 Tomato EcoRI BAC Library Solanum lycopersi... 44 0.26 2
(AL391706) Human DNA sequence from clone RP11-431K17 on chro... 38 0.26 2
(FH001782) CHO_OF276xi24f2.ab1 CHO_OF Nicotiana tabacum geno... 40 0.26 3
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 38 0.27 4
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 36 0.27 5
(CT785412) Paramecium tetraurelia 5-PRIME EST from clone LK0... 38 0.31 3
(AC196762) Citrus sinensis clone CSRBBa-042L24, WORKING DRAF... 38 0.31 5
(EJ486944) 1095403507566 Global-Ocean-Sampling_GS-28-01-01-1... 34 0.32 2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 38 0.32 6
(ET718670) CHO_OF115xf14f1.ab1 CHO_OF Nicotiana tabacum geno... 40 0.33 3
(CT009487) Zebrafish DNA sequence from clone CH211-198I6 in ... 48 0.43 1
(AC073143) Homo sapiens BAC clone RP11-764P23 from 2, comple... 48 0.43 1
(AC190473) Rhinolophus ferrumequinum clone VMRC7-30O4, WORKI... 48 0.43 1
(EI760104) CHORI510R310F19TF BAC library from the primary ov... 48 0.43 1
(CR925678) Ehrlichia ruminantium str. Welgevonden, complete ... 48 0.43 1
(CR925677) Ehrlichia ruminantium str. Gardel, complete genome. 48 0.43 1
(CR767821) Ehrlichia ruminantium strain Welgevonden, complet... 48 0.43 1
(FM992691) Candida dubliniensis CD36 chromosome 4, complete ... 38 0.47 12
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 36 0.47 5
(CU019583) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.54 6
(AM467555) Vitis vinifera contig VV78X102399.6, whole genome... 44 0.57 3
(FE757425) CAYF5646.g1 CAYF Petrolisthes cinctipes heart, wh... 36 0.58 3
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 38 0.60 4
(AX344573) Sequence 24 from Patent WO0200932. 36 0.71 9
(CU855563) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.74 4
(DT613191) ACAG-aaa71h03.g1 Hydra_EST_UCI-9 Hydra magnipapil... 38 0.83 2
(AE014188) Plasmodium falciparum 3D7 chromosome 12, complete... 38 0.83 7
(DX460068) Cpl01725 Papaya Genomic DNA BAC Library Carica pa... 44 0.83 2
(CU459093) Zebrafish DNA sequence from clone CH73-100L22 in ... 38 0.86 4
(ET101206) QM0AAB18CF11RM1 CCER1 Citrus clementina genomic c... 32 0.87 3
(AM432018) Vitis vinifera, whole genome shotgun sequence, co... 36 0.87 3
(AC171134) Helobdella robusta clone CH306-1A5, complete sequ... 36 0.88 5
(AC236161) Glycine max strain Williams 82 clone GM_WBb0059D2... 32 0.89 2
(AX458634) Sequence 180 from Patent WO0246454. 36 0.89 6
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 38 0.90 6
(AC234596) Solanum tuberosum chromosome 1 clone RH194J03, **... 36 0.92 2
(FE757424) CAYF5646.b1 CAYF Petrolisthes cinctipes heart, wh... 36 0.93 3
(FH728784) CHO_OF5098xc22f1.ab1 CHO_OF5 Nicotiana tabacum ge... 44 0.94 2
(FP236632) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.94 2
(EY499488) CBBP4715.rev CBBP Hirudo medicinalis hermaphrodit... 36 0.96 3
(BX175435) Danio rerio genomic clone DKEY-185B21, genomic su... 36 0.97 2
(EY313439) CAWX24959.fwd CAWX Helobdella robusta Primary Ear... 38 1.0 2
(AX345916) Sequence 987 from Patent WO0200928. 30 1.1 6
(EI379169) POTCG15TR Solanum tuberosum RHPOTKEY BAC ends Sol... 36 1.2 2
(AE001362) Plasmodium falciparum 3D7 chromosome 2, complete ... 38 1.3 9
(AM460128) Vitis vinifera contig VV78X203527.9, whole genome... 44 1.3 3
(CU571160) Zebrafish DNA sequence from clone CH73-160J1 in l... 36 1.5 6
(AR558914) Sequence 14045 from patent US 6747137. 36 1.5 3
(FH333657) CHO_OF4586xc10f1.ab1 CHO_OF4 Nicotiana tabacum ge... 36 1.6 3
(AU086536) Plasmodium falciparum 3D7 cDNA clone from Sugano ... 36 1.6 3
(AU087738) Plasmodium falciparum 3D7 cDNA clone from Sugano ... 36 1.6 3
(CU861457) Zebrafish DNA sequence from clone CH73-111C23 in ... 46 1.7 1
(CU468035) Zebrafish DNA sequence from clone DKEY-217G8 in l... 46 1.7 1
(BX322797) Zebrafish DNA sequence from clone CH211-214H9 in ... 46 1.7 1
(BV608700) S217P60679FD12.T0 Noemie Pan troglodytes troglody... 46 1.7 1
(AC132248) Mus musculus BAC clone RP24-425H24 from chromosom... 46 1.7 1
(AC125221) Mus musculus BAC clone RP23-74N13 from chromosome... 46 1.7 1
(AM445611) Vitis vinifera contig VV78X019377.6, whole genome... 46 1.7 1
(AC151782) Ornithorhynchus anatinus chromosome UNK clone OAB... 46 1.7 1
(AP000720) Homo sapiens genomic DNA, chromosome 11q clone:RP... 46 1.7 1
(CU571400) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.7 1
(AC026850) Homo sapiens chromosome 11 clone RP11-10C10, WORK... 46 1.7 1
(BX890561) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 46 1.7 1
(AC173977) Strongylocentrotus purpuratus clone R3-1115C21, W... 46 1.7 1
(AC021984) Homo sapiens clone RP11-3A5, WORKING DRAFT SEQUEN... 46 1.7 1
(EJ250682) 1095344031007 Global-Ocean-Sampling_GS-27-01-01-1... 46 1.7 1
(EJ006370) 1091139021092 Global-Ocean-Sampling_GS-26-01-01-1... 46 1.7 1
(EJ004486) 1091138001700 Global-Ocean-Sampling_GS-26-01-01-1... 46 1.7 1
(AL217942) Tetraodon nigroviridis genome survey sequence T7 ... 46 1.7 1
(AL197481) Tetraodon nigroviridis genome survey sequence T7 ... 46 1.7 1
(CW868708) she2h41-29.g_009.ab1 Whole-genome shotgun library... 46 1.7 1
(DW032486) CFW217-F01.y1d-s SHGC-CFW2 Gasterosteus aculeatus... 46 1.7 1
(BU192875) AGENCOURT_7830742 NIH_MGC_70 Homo sapiens cDNA cl... 46 1.7 1
(CU929327) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 1.9 4
(ES623032) NGPP216TR NGPP Nasonia giraulti cDNA, mRNA sequence. 40 1.9 2
(AM680318) Entamoeba terrapinae GSS, clone terra176e06.p1k. 34 1.9 3
(CR407590) Zebrafish DNA sequence from clone CH211-153N15 in... 38 1.9 5
(CU571403) Zebrafish DNA sequence from clone DKEY-96J1 in li... 38 2.0 4
(DC219816) Plasmodium berghei strain ANKA cDNA clone:MZ00163... 34 2.0 3
(CR513790) Zebrafish DNA sequence from clone CH211-132F7 in ... 36 2.0 6
(BX640477) Zebrafish DNA sequence from clone DKEY-43N16 in l... 36 2.1 5
(FP236424) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 2.1 3
(AU268704) Dictyostelium discoideum vegetative cDNA clone:VS... 36 2.1 3
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 36 2.1 4
(BJ393246) Dictyostelium discoideum cDNA clone:dds30k17, 5' ... 34 2.1 3
(DQ832717) Phytophthora sojae mitochondrion, complete genome. 34 2.2 5
(BJ331028) Dictyostelium discoideum cDNA clone:dda33k14, 5' ... 34 2.2 3
(FG128336) LY_YIT_BG2205 German Cockroach Whole Organism cDN... 30 2.2 3
(CU929260) Zebrafish DNA sequence from clone CH211-80B18 in ... 38 2.2 3
(CR385039) Zebrafish DNA sequence from clone DKEYP-31D1 in l... 38 2.2 4
(AM464854) Vitis vinifera contig VV78X057951.11, whole genom... 36 2.2 2
(ES618548) NGPCI08TR NGPA Nasonia giraulti cDNA, mRNA sequence. 40 2.2 2
(FI413757) CH322-141I16.x CHORI-322 Drosophila melanogaster ... 36 2.2 3
(BJ370545) Dictyostelium discoideum cDNA clone:ddc54c14, 5' ... 38 2.3 2
(AW911580) ur97h05.y1 NCI_CGAP_Mam6 Mus musculus cDNA clone ... 36 2.3 2
(BJ368990) Dictyostelium discoideum cDNA clone:ddc48i19, 5' ... 34 2.3 3
(CU466275) Zebrafish DNA sequence from clone DKEY-156G19 in ... 38 2.3 4
(AC116919) Dictyostelium discoideum chromosome 2 map complem... 30 2.3 6
(BJ368400) Dictyostelium discoideum cDNA clone:ddc46f15, 5' ... 34 2.4 3
(AC115683) Dictyostelium discoideum chromosome 2 map complem... 30 2.4 6
(AC173134) Bos taurus clone CH240-425G19, WORKING DRAFT SEQU... 42 2.4 2
(AY232271) Dictyostelium discoideum putative protein Roco9 (... 36 2.4 5
(M64861) Dictyostelium discoideum TFIID mRNA, complete cds. 36 2.5 3
(FI306108) AdH1179-CPY2-N8TR AdH1 Arachis duranensis genomic... 38 2.5 2
(CU655828) Zebrafish DNA sequence from clone CH1073-132M13 C... 34 2.5 4
(AM439557) Vitis vinifera contig VV78X158123.1, whole genome... 44 2.5 2
(BJ397440) Dictyostelium discoideum cDNA clone:dds46f09, 5' ... 34 2.5 3
(FI381283) CH322-02L11.y CHORI-322 Drosophila melanogaster g... 36 2.6 3
(BJ396554) Dictyostelium discoideum cDNA clone:dds43h02, 5' ... 34 2.6 3
(FI404427) CH322-12B17.y CHORI-322 Drosophila melanogaster g... 36 2.6 3
(BJ395429) Dictyostelium discoideum cDNA clone:dds38h20, 5' ... 34 2.7 3
(CR450850) Zebrafish DNA sequence from clone CH211-113J3 in ... 42 2.7 5
(AM462858) Vitis vinifera, whole genome shotgun sequence, co... 34 2.7 5
(BJ370378) Dictyostelium discoideum cDNA clone:ddc53l21, 5' ... 34 2.8 3
(BX145919) Danio rerio genomic clone DKEY-104M9, genomic sur... 32 2.8 3
(FI463051) CH322-40H01.y CHORI-322 Drosophila melanogaster g... 36 2.8 3
(FI455399) CH322-24F03.y CHORI-322 Drosophila melanogaster g... 36 2.8 3
(DQ870926) Bombus ignitus mitochondrion, complete genome. 36 2.9 4
(FI415946) CH322-144H09.x CHORI-322 Drosophila melanogaster ... 36 2.9 3
(FN357807) Schistosoma mansoni genome sequence supercontig S... 36 2.9 4
(EC194247) SSE00000189 Streblomastix strix Non-normalized St... 42 3.0 2
(FI426648) CH322-158H04.x CHORI-322 Drosophila melanogaster ... 36 3.0 3
(FI375727) CH321-88F21.x CHORI-321 Drosophila melanogaster g... 36 3.0 3
(FI383531) CH322-06F19.x CHORI-322 Drosophila melanogaster g... 36 3.1 3
(AC222415) Bos taurus clone CH240-417L16, WORKING DRAFT SEQU... 44 3.1 4
(BX927252) Zebrafish DNA sequence from clone CH211-212O10 in... 34 3.1 6
(AC140767) Rattus norvegicus clone CH230-118M23, *** SEQUENC... 34 3.3 2
(AC113671) Rattus norvegicus clone CH230-302H23, *** SEQUENC... 34 3.3 2
(CU856093) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.3 2
(M69147) Plasmodium falciparum sexual stage DNA sequence, op... 36 3.3 2
(FI318390) AdH1170-CPY2-P9TR AdH1 Arachis duranensis genomic... 38 3.4 2
(EY480053) CBBP1062.rev CBBP Hirudo medicinalis hermaphrodit... 36 3.5 3
(U68754) Dictyostelium discoideum putative transcription fac... 36 3.5 3
(ES629442) NGPSE47TR NGPP Nasonia giraulti cDNA, mRNA sequence. 40 3.5 2
(EC742782) POE00004231 PL(light) Polytomella parva cDNA, mRN... 38 3.6 2
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 36 3.6 4
(ES614228) NGPA682TR NGPA Nasonia giraulti cDNA, mRNA sequence. 40 3.6 2
(FE113505) LV_HC_RA058P06f Litopenaeus vannamei hemocyte cDN... 30 3.6 3
(CV674243) RET7SJ_31G02.T7 Schistosoma japonicum reverse cDN... 34 3.6 2
(ES626403) NGPQW85TR NGPP Nasonia giraulti cDNA, mRNA sequence. 40 3.7 2
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 34 3.7 13
(ES629020) NGPS665TR NGPP Nasonia giraulti cDNA, mRNA sequence. 40 3.7 2
(ES630085) NGPSP68TR NGPP Nasonia giraulti cDNA, mRNA sequence. 40 3.7 2
(AM486201) Vitis vinifera contig VV78X107427.5, whole genome... 44 3.8 2
(AM429749) Vitis vinifera contig VV78X189591.4, whole genome... 34 3.8 2
(AL844507) Plasmodium falciparum 3D7 chromosome 8. 38 3.8 6
(EJ927926) 1093018790365 Global-Ocean-Sampling_GS-30-02-01-1... 42 3.9 2
(CX675954) UCRCS08_66A02_g Parent Washington Navel Orange Ca... 32 3.9 3
(AC144526) Homo sapiens chromosome 7 clone RP13-632A2, WORKI... 38 3.9 5
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete... 38 4.0 8
(AC004153) Plasmodium falciparum chromosome 12 clone PFYAC81... 36 4.1 5
(AC117267) Dictyostelium discoideum chromosome 2 map 5836255... 36 4.2 5
(AM432739) Vitis vinifera contig VV78X029379.2, whole genome... 36 4.3 3
(AY043292) Tribolium castaneum strain GA-2 HOMC gene cluster... 38 4.4 5
(AC034230) Homo sapiens chromosome 5 clone CTD-2203J5, WORKI... 40 4.4 2
(AE014186) Plasmodium falciparum 3D7 chromosome 11, complete... 34 4.4 9
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 4.4 5
(AB207566) Aegilops speltoides DNA, ndhF-rpl32 intergenic re... 34 4.5 2
(AC154931) Carollia perspicillata clone 577H2, WORKING DRAFT... 34 4.7 3
(AM467794) Vitis vinifera contig VV79X002080.3, whole genome... 42 4.8 2
(CU137655) Medicago truncatula chromosome 5 clone mth2-16f8,... 36 4.9 4
(AM478194) Vitis vinifera contig VV78X224877.11, whole genom... 38 5.1 2
(AL076102) Drosophila melanogaster genome survey sequence TE... 36 5.2 3
(AM428338) Vitis vinifera contig VV78X240448.25, whole genom... 38 5.3 4
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084... 36 5.3 4
(AC115579) Dictyostelium discoideum chromosome 2 map 6097680... 36 5.3 3
(AL054273) Drosophila melanogaster genome survey sequence TE... 36 5.4 3
(BJ398250) Dictyostelium discoideum cDNA clone:dds11l16, 3' ... 34 5.4 3
(AB211596) Dictyostelium discoideum DrbA gene for retinoblas... 38 5.4 3
(AC114258) Dictyostelium discoideum chromosome 2 map complem... 36 5.4 5
(AC025828) Homo sapiens, clone RP11-13I24, complete sequence. 34 5.4 6
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105... 36 5.4 5
(AC131603) Rattus norvegicus clone CH230-70J8, WORKING DRAFT... 36 5.5 4
(AX344569) Sequence 20 from Patent WO0200932. 40 5.5 9
(AC202216) Acyrthosiphon pisum BAC VMRC38-20-A5 (Benaroya R... 32 5.6 7
(AC196187) Trichinella spiralis BAC clone TS195-17H12 from c... 36 5.6 6
(DQ369416) Apotolamprus helenae cytochrome b (cytb) gene, pa... 36 5.7 2
(AL078175) Drosophila melanogaster genome survey sequence TE... 36 5.7 3
(CU855687) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 38 5.7 6
(EU141714) Cryptosporidium parvum isolate 13475 47 kDa prote... 36 5.9 2
(AC025461) Homo sapiens chromosome 5 clone CTD-2237C2, WORKI... 40 6.1 2
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 36 6.1 5
(AL844503) Plasmodium falciparum 3D7 chromosome 4. 38 6.1 6
(BX548043) Zebrafish DNA sequence from clone DKEY-81J8 in li... 36 6.1 4
(AP010560) Lotus japonicus genomic DNA, clone: LjT18K19, TM1... 42 6.2 3
(AC169514) Medicago truncatula chromosome 7 BAC clone mth2-6... 36 6.3 5
(CT030120) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 6.4 4
(EY183170) CBTI8959.g1_N07.ab1:P Triphysaria pusilla root ti... 40 6.4 2
(FP236474) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 6.4 5
(AC189552) Brassica rapa subsp. pekinensis clone KBrH005P10,... 36 6.4 5
(AY253182) Haemulon aurolineatum microsatellite HaAAT3 seque... 36 6.5 2
(AM483479) Vitis vinifera contig VV78X141484.4, whole genome... 44 6.5 2
(FJ478173) Cephus cinctus mitochondrion, complete genome. 36 6.6 3
(CU459116) Zebrafish DNA sequence from clone CH1073-103H6 in... 44 6.7 1
(CR848838) Zebrafish DNA sequence from clone CH211-192O7 in ... 44 6.7 1
(CR352260) Zebrafish DNA sequence from clone CH211-234B14 in... 44 6.7 1
(BX571957) Zebrafish DNA sequence from clone DKEYP-117B4 in ... 44 6.7 1
(BX539347) Zebrafish DNA sequence from clone CH211-262E15 in... 44 6.7 1
(BX005223) Zebrafish DNA sequence from clone DKEY-53K12. 44 6.7 1
(AL929131) Zebrafish DNA sequence from clone CH211-286O17. 44 6.7 1
(AC147900) Xenopus (Silurana) tropicalis clone CH216-53P23, ... 44 6.7 1
(EF710626) Cotesia sesamiae Kitale bracovirus clone BAC 1M18... 44 6.7 1
(EZ043252) TSA: Acropora millepora SeqIndex86458, mRNA seque... 44 6.7 1
(AL671856) Mouse DNA sequence from clone RP23-328E8 on chrom... 44 6.7 1
(AC154656) Mus musculus BAC clone RP24-268M5 from chromosome... 44 6.7 1
(FM992693) Candida dubliniensis CD36 chromosome 6, complete ... 44 6.7 1
(CR382136) Debaryomyces hansenii strain CBS767 chromosome A ... 44 6.7 1
(AP010945) Solanum lycopersicum DNA, chromosome 8, clone: C0... 44 6.7 1
(AM483970) Vitis vinifera contig VV78X076059.6, whole genome... 44 6.7 1
(AM465596) Vitis vinifera contig VV78X226519.15, whole genom... 44 6.7 1
(AM465124) Vitis vinifera contig VV78X017523.3, whole genome... 44 6.7 1
(AM423544) Vitis vinifera contig VV79X007385.1, whole genome... 44 6.7 1
(GC527808) Sequence 1318 from patent US 7411051. 44 6.7 1
(EA745069) Sequence 1318 from patent US 7368531. 44 6.7 1
(CS044080) Sequence 4634 from Patent WO2005019258. 44 6.7 1
(CS035128) Sequence 4634 from Patent WO2005016962. 44 6.7 1
(CQ869685) Sequence 106 from Patent WO2004074320. 44 6.7 1
(BD230978) 49 human secreted proteins. 44 6.7 1
(GN005439) Sequence 4634 from Patent EP2014675. 44 6.7 1
(AR756795) Sequence 35 from patent US 6953667. 44 6.7 1
(AR337273) Sequence 35 from patent US 6566325. 44 6.7 1
(FN373657) Schistosoma mansoni genome sequence supercontig S... 44 6.7 1
(AC159435) Trypanosoma brucei chromosome 8 clone RPCI93-29H2... 44 6.7 1
(AK094804) Homo sapiens cDNA FLJ37485 fis, clone BRAWH2014379. 44 6.7 1
(AC099568) Homo sapiens chromosome 1 clone RP5-943J3, comple... 44 6.7 1
(AC093423) Homo sapiens chromosome 1 clone RP11-413E1, compl... 44 6.7 1
(AC090371) Homo sapiens chromosome 18, clone RP11-746B8, com... 44 6.7 1
(AC012123) Homo sapiens chromosome 18, clone RP11-57G22, com... 44 6.7 1
(AC148468) Xenopus (Silurana) tropicalis clone CH216-97F4, W... 44 6.7 1
(AC148232) Didelphis virginiana clone LB3-86F2, WORKING DRAF... 44 6.7 1
(AC146773) Didelphis virginiana clone LB3-175O22, WORKING DR... 44 6.7 1
(AC138684) Homo sapiens chromosome 18 clone RP11-43L3 map 18... 44 6.7 1
(AC094903) Rattus norvegicus clone CH230-6J15, WORKING DRAFT... 44 6.7 1
(FP340264) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 6.7 1
(FP340263) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 6.7 1
(FP089567) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.7 1
(CU929435) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.7 1
(CU928235) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.7 1
(CU914177) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.7 1
(CU655932) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.7 1
(CT826383) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.7 1
(AP001123) Homo sapiens genomic DNA, chromosome 18q12 clone:... 44 6.7 1
(AC193080) Ornithorhynchus anatinus clone OA_Bb-36C16, WORKI... 44 6.7 1
(AC191487) Ornithorhynchus anatinus clone OA_Bb-306D18, WORK... 44 6.7 1
(AC184604) Strongylocentrotus purpuratus clone R3-3037K6, WO... 44 6.7 1
(AC181145) Strongylocentrotus purpuratus clone R3-3037J19, W... 44 6.7 1
(AC179628) Strongylocentrotus purpuratus clone R3-1025N13, W... 44 6.7 1
(AC178209) Strongylocentrotus purpuratus clone R3-1116H5, WO... 44 6.7 1
(AC178185) Strongylocentrotus purpuratus clone R3-3082E2, WO... 44 6.7 1
(AZ932230) 474.dhz96c10.s1 Saccharomyces unisporus NRRL Y-15... 44 6.7 1
(FH643859) CHO_OF4978xi23f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 6.7 1
(FH104171) CHO_OF3037xj04f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 6.7 1
(ER360451) 1092402553169 Global-Ocean-Sampling_GS-34-01-01-1... 44 6.7 1
(ER359379) 1092385400561 Global-Ocean-Sampling_GS-34-01-01-1... 44 6.7 1
(EJ939120) 1093018855151 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.7 1
(EJ938948) 1093018853615 Global-Ocean-Sampling_GS-30-02-01-1... 44 6.7 1
(AL497880) T. brucei sheared genomic DNA clone 379e09, rever... 44 6.7 1
(EJ383540) 1092963780931 Global-Ocean-Sampling_GS-28-01-01-1... 44 6.7 1
(DX463961) Cpl05756 Papaya Genomic DNA BAC Library Carica pa... 44 6.7 1
(DH584659) Rattus norvegicus DNA, BAC clone: RNB1-104N24, 5'... 44 6.7 1
(CT137071) Sus scrofa genomic clone CH242-221C17, genomic su... 44 6.7 1
(AG645139) Macaca fuscata fuscata DNA, clone: MSB2-056G11_F,... 44 6.7 1
(BZ250878) CH230-448I5.TV CHORI-230 Segment 2 Rattus norvegi... 44 6.7 1
(BX960207) Forward strand read from insert in 5'HPRT inserti... 44 6.7 1
(AG103723) Pan troglodytes DNA, clone: PTB-107G18.F. 44 6.7 1
(EH296005) UAHYP_02C_F_F12 UaHyphae_ARS Uromyces appendicula... 44 6.7 1
(EH296004) UAHYP_02C_R_F12 UaHyphae_ARS Uromyces appendicula... 44 6.7 1
(EG345537) SAAH-aac89f11.b1 Agen 0058 Schmidtea mediterranea... 44 6.7 1
(EC821541) SME00004045 esmbsro2 Sawyeria marylandensis cDNA,... 44 6.7 1
(AV028018) Mus musculus adult liver cDNA, partial sequence, ... 44 6.7 1
(DR094935) STRR1_17_E11.g1_A033 Stem Response Resistant Pinu... 44 6.7 1
(AM742589) Cucumis melo subsp. melo EST, clone 46d_24-E10-M13R. 44 6.7 1
(AM738771) Cucumis melo subsp. melo EST, clone 15d_31-D10-M13R. 44 6.7 1
(AM736996) Cucumis melo subsp. melo EST, clone 15d_25-A09-M13R. 44 6.7 1
(AM728250) Cucumis melo subsp. agrestis EST, clone A_34-C02-... 44 6.7 1
(DA514094) Homo sapiens cDNA clone FEBRA2001738, 5' end, mRN... 44 6.7 1
(DA205511) Homo sapiens cDNA clone BRAWH2011928, 5' end, mRN... 44 6.7 1
(DA146042) Homo sapiens cDNA clone BRAMY2002696, 5' end, mRN... 44 6.7 1
(CT797829) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 6.7 1
(CT771988) Paramecium tetraurelia 5-PRIME EST from clone LK0... 44 6.7 1
(AL598855) Homo sapiens mRNA; EST DKFZp313N0422_r1 (from cl... 44 6.7 1
(CN585015) USDA-FP_128084 Acyrthosiphon pisum, Pea Aphid Acy... 44 6.7 1
(CN582366) USDA-FP_125428 Acyrthosiphon pisum, Pea Aphid Acy... 44 6.7 1
(CF672255) RTCNT1_62_H07.b1_A029 Root control Pinus taeda cD... 44 6.7 1
(CF388231) RTDR2_1_C03.g1_A021 Loblolly pine roots recoverin... 44 6.7 1
(CD724022) oj29d01.y1 Human lacrimal gland, unamplified: oj ... 44 6.7 1
(BQ720595) AGENCOURT_8295590 Lupski_sympathetic_trunk Homo s... 44 6.7 1
(BM718706) UI-E-EO1-ajc-o-17-0-UI.r1 UI-E-EO1 Homo sapiens c... 44 6.7 1
(BI964138) ie65d05.y1 Melton Normalized Human Islet 4 N4-HIS... 44 6.7 1
(GO988829) CCIG8549.g1 CCIG Mimulus guttatus DUN10 floral bu... 44 6.7 1
(GO988828) CCIG8549.b1 CCIG Mimulus guttatus DUN10 floral bu... 44 6.7 1
(GO977052) CCIG2118.g1 CCIG Mimulus guttatus DUN10 floral bu... 44 6.7 1
(GO977051) CCIG2118.b1 CCIG Mimulus guttatus DUN10 floral bu... 44 6.7 1
(GO190650) CAGB1275.fwd CAGB Alvinella pompejana Normalized ... 44 6.7 1
(GO190649) CAGB1275.rev CAGB Alvinella pompejana Normalized ... 44 6.7 1
(GO182211) CAGA7503.fwd CAGA Alvinella pompejana Normalized ... 44 6.7 1
(GO182210) CAGA7503.rev CAGA Alvinella pompejana Normalized ... 44 6.7 1
(GO167778) CAGA42521.fwd CAGA Alvinella pompejana Normalized... 44 6.7 1
(GO167777) CAGA42521.rev CAGA Alvinella pompejana Normalized... 44 6.7 1
(GO151919) CAGA35069.fwd CAGA Alvinella pompejana Normalized... 44 6.7 1
(GO151918) CAGA35069.rev CAGA Alvinella pompejana Normalized... 44 6.7 1
(GO145045) CAGA3125.fwd CAGA Alvinella pompejana Normalized ... 44 6.7 1
(GO145044) CAGA3125.rev CAGA Alvinella pompejana Normalized ... 44 6.7 1
(GO129520) CAGA23805.fwd CAGA Alvinella pompejana Normalized... 44 6.7 1
(GO129519) CAGA23805.rev CAGA Alvinella pompejana Normalized... 44 6.7 1
(GO127081) CAGA22665.rev CAGA Alvinella pompejana Normalized... 44 6.7 1
(GO117499) CAGA18058.fwd CAGA Alvinella pompejana Normalized... 44 6.7 1
(GO117498) CAGA18058.rev CAGA Alvinella pompejana Normalized... 44 6.7 1
(GE761501) MUW15-O19.y1d-s SHGC-MUW Mytilus californianus cD... 44 6.7 1
(GE594438) CCPW3123.b1_E13.ab1 CCP(UWX) Globe Artichoke Cyna... 44 6.7 1
(GE588406) CCPW12561.b1_A22.ab1 CCP(UWX) Globe Artichoke Cyn... 44 6.7 1
(GE586364) CCPW10649.b1_A24.ab1 CCP(UWX) Globe Artichoke Cyn... 44 6.7 1
(FM977082) Glossina morsitans morsitans EST, clone GMsg100h0... 44 6.7 1
(FK936957) ppo3h13n09t.1 Phytophthora parasitica appressoriu... 44 6.7 1
(FF318260) 280396527 Pea aphid whole body normalized full le... 44 6.7 1
(FF309200) 279374319 Pea aphid whole body normalized full le... 44 6.7 1
(FF307403) 279369160 Pea aphid whole body normalized full le... 44 6.7 1
(FF304731) 279359909 Pea aphid whole body normalized full le... 44 6.7 1
(FF297293) 279316090 Pea aphid whole body normalized full le... 44 6.7 1
(FE807547) CCAG27489.b1 CCAG Petrolisthes cinctipes heart, g... 44 6.7 1
(EX653965) 256854304 Pea aphid whole body normalized full le... 44 6.7 1
(EX652157) 256757267 Pea aphid whole body normalized full le... 44 6.7 1
(EX648998) 256729067 Pea aphid whole body normalized full le... 44 6.7 1
(EX644828) 256666487 Pea aphid whole body normalized full le... 44 6.7 1
(EX642713) 256647991 Pea aphid whole body normalized full le... 44 6.7 1
(EX640987) 256635795 Pea aphid whole body normalized full le... 44 6.7 1
(EX629107) 255455875 Pea aphid whole body normalized full le... 44 6.7 1
(EX627802) 255446328 Pea aphid whole body normalized full le... 44 6.7 1
(EX626107) 255438110 Pea aphid whole body normalized full le... 44 6.7 1
(EX625594) 255432374 Pea aphid whole body normalized full le... 44 6.7 1
(EX619088) 255406676 Pea aphid whole body normalized full le... 44 6.7 1
(EX618094) 255400972 Pea aphid whole body normalized full le... 44 6.7 1
(EX616797) 255397421 Pea aphid whole body normalized full le... 44 6.7 1
(EX614565) 255387060 Pea aphid whole body normalized full le... 44 6.7 1
(EX606644) 255355141 Pea aphid whole body normalized full le... 44 6.7 1
(EX604436) 255345746 Pea aphid whole body normalized full le... 44 6.7 1
(EX603906) 255344368 Pea aphid whole body normalized full le... 44 6.7 1
(AL068264) Drosophila melanogaster genome survey sequence TE... 36 6.8 3
(AL057765) Drosophila melanogaster genome survey sequence TE... 36 6.8 3
(AP010652) Solanum lycopersicum DNA, chromosome 8, clone: C0... 34 6.9 7
(AC027343) Homo sapiens chromosome 5 clone CTD-2296D1, compl... 32 7.0 6
(CU914183) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 7.0 4
(EA102739) Sequence 122 from patent US 7195870. 34 7.1 4
(AX323654) Sequence 142 from Patent WO0192565. 34 7.1 4
(AX277959) Sequence 122 from Patent WO0177375. 34 7.1 4
(GM996002) Sequence 142 from Patent EP2014776. 34 7.1 4
(G37862) 18195 Plasmodium falciparum haploid Plasmodium falc... 38 7.1 2
(AC168589) Strongylocentrotus purpuratus clone R3-3065D20, W... 36 7.1 3
(BB727854) Mus musculus 8 cells embryo 8 cells cDNA, RIKEN f... 38 7.2 2
(AM472317) Vitis vinifera contig VV78X139656.24, whole genom... 34 7.2 3
(FB571378) Sequence 245 from Patent EP1865317. 34 7.2 6
(FB669598) Sequence 243 from Patent WO2007144105. 42 7.2 2
(FB676007) Sequence 10 from Patent WO2007118704. 36 7.4 6
(FB676003) Sequence 6 from Patent WO2007118704. 36 7.4 6
(EB873389) 4878624 ZF03 Danio rerio cDNA clone 2151130, mRNA... 38 7.6 2
(FP102959) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 7.6 5
(AC046181) Homo sapiens chromosome 18, clone RP11-815K11, co... 36 7.7 4
(AL355592) Human DNA sequence from clone RP11-349E4 on chrom... 38 7.7 4
(AC176535) Strongylocentrotus purpuratus clone R3-3075L03, W... 38 7.8 4
(AY160100) Dictyostelium discoideum nucleotide exchange fact... 36 7.9 4
(CT797455) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 8.0 4
(CR385065) Zebrafish DNA sequence from clone CH211-232F6 in ... 40 8.0 3
(CU179658) Zebrafish DNA sequence from clone CH211-251I10. 38 8.2 2
(AC184181) Strongylocentrotus purpuratus clone R3-3022M5, WO... 38 8.2 3
(AC129473) Homo sapiens chromosome 8 clone CTC-806C5 map 8, ... 36 8.2 4
(AU264858) Dictyostelium discoideum vegetative cDNA clone:VS... 34 8.3 3
(DX092188) AU_BAC033A1A10_Sp6 CHORI212 Ictalurus punctatus g... 38 8.3 2
(C89826) Dictyostelium discoideum slug cDNA, clone SSG205. 36 8.6 2
(FP236162) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 8.6 2
(AM436127) Vitis vinifera contig VV78X246558.2, whole genome... 36 8.6 3
(AL136168) Human DNA sequence from clone RP3-477H17 on chrom... 36 8.6 3
(AM451893) Vitis vinifera contig VV78X035256.5, whole genome... 36 8.7 3
(DC224280) Plasmodium berghei strain ANKA cDNA clone:MZ00875... 38 8.7 2
(AC092665) Homo sapiens BAC clone RP11-544B5 from 4, complet... 38 8.8 5
(AC178382) Strongylocentrotus purpuratus clone R3-3107H20, W... 36 8.8 4
(AM436347) Vitis vinifera contig VV78X143219.7, whole genome... 28 8.9 4
(AC087373) Homo sapiens chromosome 11, clone RP11-54J7, comp... 36 9.0 5
(AL741690) Danio rerio genomic clone DKEY-21H2, genomic surv... 38 9.0 2
(CG802007) 1118026G01.x1 1118 - RescueMu Grid S Zea mays gen... 38 9.0 2
(AL935165) Zebrafish DNA sequence from clone CH211-198D18 in... 34 9.0 4
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 34 9.0 4
(CT573442) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 9.1 5
(L04161) Plasmodium falciparum clone Pfg377 PfsXLX gene, com... 36 9.1 2
(AL844504) Plasmodium falciparum 3D7 chromosome 5. 38 9.1 6
(DJ386624) Diagnosis of Diseases Associated with Metastasis. 40 9.2 2
(AX348688) Sequence 146 from Patent WO0202807. 40 9.2 2
(AX345987) Sequence 1058 from Patent WO0200928. 40 9.2 2
(AX281420) Sequence 84 from Patent WO0177376. 40 9.2 2
(CR394545) Zebrafish DNA sequence from clone CH211-103E6 in ... 40 9.5 6
(CR678095) Zebrafish DNA sequence from clone DKEY-21E13 in l... 36 9.6 5
(AM448650) Vitis vinifera contig VV78X115817.3, whole genome... 36 9.6 3
(BX465849) Zebrafish DNA sequence from clone DKEY-263L8 in l... 34 9.7 7
(AC005308) Plasmodium falciparum chromosome 12 clone PFYAC49... 36 9.7 6
(AC132619) Mus musculus BAC clone RP23-195N4 from chromosome... 40 9.7 2
(BH763548) BMBAC337G11T7_PSU Brugia malayi Genomic Bac Libra... 38 9.8 2
(CZ903101) gy17c09.x1.b.screen Tomato methylation filtered l... 38 9.9 2

>(AU037989) Dictyostelium discoideum slug cDNA, clone SSH130.
Length = 549

Score = 357 bits (180), Expect(2) = e-149
Identities = 183/183 (100%)
Strand = Plus / Plus


Query: 384 caccaccatcaccaattcaaataccaataatttgtacaacaactataatagttaaccaat 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 caccaccatcaccaattcaaataccaataatttgtacaacaactataatagttaaccaat 342


Query: 444 catctccacaaccattaccaattcaatatccacaaattcaattngaaaaatttaatttat 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 catctccacaaccattaccaattcaatatccacaaattcaattngaaaaatttaatttat 402


Query: 504 caccaaattccaatttatcaaatcaattaagcgatcattttaataacaataataataacc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 caccaaattccaatttatcaaatcaattaagcgatcattttaataacaataataataacc 462


Query: 564 atc 566
|||
Sbjct: 463 atc 465

Score = 208 bits (105), Expect(2) = e-149
Identities = 107/108 (99%)
Strand = Plus / Plus


Query: 102 taaataaaatgtatcaaccangaattaataataactatatattatatccaacatcaccac 161
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taaataaaatgtatcaaccaggaattaataataactatatattatatccaacatcaccac 60


Query: 162 cattattaagtgaatgttttagtgttagttatccacctccaccatttt 209
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cattattaagtgaatgttttagtgttagttatccacctccaccatttt 108

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 607,793,692
Number of extensions: 47513941
Number of successful extensions: 6715670
Number of sequences better than 10.0: 421
Length of query: 649
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 625
Effective length of database: 102,084,959,077
Effective search space: 63803099423125
Effective search space used: 63803099423125
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 8. 1
Homology vs Protein
Query= Contig-U05309-1 (Contig-U05309-1Q) /CSM_Contig/Contig-U05309-1Q.Seq.d
(649 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 401,209,974
Number of extensions: 4187083
Number of successful extensions: 4880
Number of sequences better than 10.0: 0
Number of HSP's gapped: 4873
Number of HSP's successfully gapped: 0
Length of query: 216
Length of database: 1,061,185,681
Length adjustment: 123
Effective length of query: 93
Effective length of database: 659,166,577
Effective search space: 61302491661
Effective search space used: 61302491661
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.82 gvh: 0.41 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.27
nuc: 0.41 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
24.0 %: cytoplasmic
16.0 %: mitochondrial

>> prediction for Contig-U05309-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0