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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05306-1
Contig ID Contig-U05306-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U05306-1 (Contig-U05306-1Q) /CSM_Contig/Contig-U05306-1Q.Seq.d
ATCAATTATTTAAAATAAAATTTAAAATGGATAGTTGTGATTATAAATCA
TATGCACAGGCATTAGATTTAGTTAATGATAAAGAATTAATTGAAGAATA
TAAGAAATATCATAAAAATGTTTGGAAAGAAGTAAATGAAGCATTATGCT
CAATAGGAATTAAAAAAATGAAGATTTTTTTACTTGGAACCCATCTTTTT
ATGTATTATGAAGCAAGAGCTGATTTTGATCCAAAAATTGATTTCCAAAA
ATATACAGAATTAACNCCAAAAGCAAATGAATGGGATAACTTAATGNGAA
AATTTCAACAAAAAATATCTGATATTCCAGAAAATCAATTAGGTGAATGG
TGGAGTCCAATGGATTTAGTTTATGATTTGGATTGGTTTAAACAACAACA
ATAAAAAATTAAAAATAATTAATTAAAAAAAGTAATAATAAAAATGATAA
TTAATATTTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAA
Gap no gap
Contig length 492
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3482927
End point 3483309
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05306
List of clone(s) 

est1=SSH109E,1,493
Translated Amino Acid sequence 
QLFKIKFKMDSCDYKSYAQALDLVNDKELIEEYKKYHKNVWKEVNEALCSIGIKKMKIFL
LGTHLFMYYEARADFDPKIDFQKYTELTPKANEWDNLMXKFQQKISDIPENQLGEWWSPM
DLVYDLDWFKQQQ*kiknn*lkkviikmiinifffkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
inylk*nlkwivviinhmhrh*i*lmikn*lknirniikmfgkk*mkhyaq*elkk*rff
ylepiflcimkqeliliqkliskniqn*xqkqmngit*xenfnkkylifqkin*vnggvq
wi*fmiwiglnnnnkklkiin*kk***k**liffflkkkkkkkk


Frame B:
sii*nki*ng*l*l*iictgirfs***rin*ri*eis*kclersk*simlnrn*knedff
twnpsfyvl*sks*f*skn*fpkiyrinxksk*mg*lnxkistkni*ysrksir*mvesn
gfsl*fglv*tttikn*k*likksnnkndn*yfff*kkkkkkk


Frame C:
QLFKIKFKMDSCDYKSYAQALDLVNDKELIEEYKKYHKNVWKEVNEALCSIGIKKMKIFL
LGTHLFMYYEARADFDPKIDFQKYTELTPKANEWDNLMXKFQQKISDIPENQLGEWWSPM
DLVYDLDWFKQQQ*kiknn*lkkviikmiinifffkkkkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05306-1 (Contig-U05306-1Q)
/CSM_Contig/Contig-U05306-1Q.Seq.d
         (492 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05306-1 (Contig-U05306-1Q) /CSM_Contig/Conti...   696  0.0
Contig-U13836-1 (Contig-U13836-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U12558-1 (Contig-U12558-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U11510-1 (Contig-U11510-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U10898-1 (Contig-U10898-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U12260-1 (Contig-U12260-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U10100-1 (Contig-U10100-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U09017-1 (Contig-U09017-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U06883-1 (Contig-U06883-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U04886-1 (Contig-U04886-1Q) /CSM_Contig/Conti...    38  0.009

>Contig-U05306-1 (Contig-U05306-1Q) /CSM_Contig/Contig-U05306-1Q.Seq.d
          Length = 492

 Score =  696 bits (351), Expect = 0.0
 Identities = 385/399 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcaattatttaaaataaaatttaaaatggatagttgtgattataaatcatatgcacagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atcaattatttaaaataaaatttaaaatggatagttgtgattataaatcatatgcacagg 60

                                                                       
Query: 61  cattagatttagttaatgataaagaattaattgaagaatataagaaatatcataaaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cattagatttagttaatgataaagaattaattgaagaatataagaaatatcataaaaatg 120

                                                                       
Query: 121 tttggaaagaagtaaatgaagcattatgctcaataggaattnnnnnnntgaagannnnnn 180
           |||||||||||||||||||||||||||||||||||||||||       ||||||      
Sbjct: 121 tttggaaagaagtaaatgaagcattatgctcaataggaattaaaaaaatgaagatttttt 180

                                                                       
Query: 181 nacttggaacccatctttttatgtattatgaagcaagagctgattttgatccaaaaattg 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tacttggaacccatctttttatgtattatgaagcaagagctgattttgatccaaaaattg 240

                                                                       
Query: 241 atttccaaaaatatacagaattaacnccaaaagcaaatgaatgggataacttaatgngaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atttccaaaaatatacagaattaacnccaaaagcaaatgaatgggataacttaatgngaa 300

                                                                       
Query: 301 aatttcaacaaaaaatatctgatattccagaaaatcaattaggtgaatggtggagtccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aatttcaacaaaaaatatctgatattccagaaaatcaattaggtgaatggtggagtccaa 360

                                                  
Query: 361 tggatttagtttatgatttggattggtttaaacaacaac 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tggatttagtttatgatttggattggtttaaacaacaac 399


 Score = 50.1 bits (25), Expect = 2e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 432 gtaataataaaaatgataattaata 456
           |||||||||||||||||||||||||
Sbjct: 432 gtaataataaaaatgataattaata 456


>Contig-U13836-1 (Contig-U13836-1Q) /CSM_Contig/Contig-U13836-1Q.Seq.d
          Length = 1740

 Score = 42.1 bits (21), Expect = 6e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 112 ataaaaatgtttggaaagaag 132
           |||||||||||||||||||||
Sbjct: 275 ataaaaatgtttggaaagaag 295


>Contig-U12558-1 (Contig-U12558-1Q) /CSM_Contig/Contig-U12558-1Q.Seq.d
          Length = 1026

 Score = 42.1 bits (21), Expect = 6e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 5   attatttaaaataaaatttaa 25
           |||||||||||||||||||||
Sbjct: 158 attatttaaaataaaatttaa 138


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,707
Number of Sequences: 6905
Number of extensions: 11707
Number of successful extensions: 1698
Number of sequences better than 10.0: 625
length of query: 492
length of database: 5,674,871
effective HSP length: 16
effective length of query: 476
effective length of database: 5,564,391
effective search space: 2648650116
effective search space used: 2648650116
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7.18
Homology vs DNA 
Query= Contig-U05306-1 (Contig-U05306-1Q) /CSM_Contig/Contig-U05306-1Q.Seq.d
         (492 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU037969) Dictyostelium discoideum slug cDNA, clone SSH109.      420   0.0    2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...   319   0.0    3
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI...    38   0.005  7
(U50301) Caenorhabditis elegans cosmid F20D6, complete seque...    38   0.007  4
(CU694704) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.022  4
(CU914307) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   0.032  2
(CT570930) Rainbow trout muscle SSH library from warm, cold ...    36   0.048  3
(AM466521) Vitis vinifera contig VV78X274004.3, whole genome...    50   0.082  1
(AM438595) Vitis vinifera contig VV78X129965.14, whole genom...    50   0.082  1
(CT027609) Zebrafish DNA sequence from clone DKEY-57K17 in l...    48   0.32   1
(CR759843) Zebrafish DNA sequence from clone DKEYP-82B4 in l...    48   0.32   1
(CR556708) Zebrafish DNA sequence from clone DKEY-29N10 in l...    48   0.32   1
(CR513782) Zebrafish DNA sequence from clone DKEY-272J9 in l...    48   0.32   1
(BX842593) Zebrafish DNA sequence from clone DKEY-19K8 in li...    48   0.32   1
(BX649394) Zebrafish DNA sequence from clone DKEY-57C22.           48   0.32   1
(BX649328) Zebrafish DNA sequence from clone DKEY-72L17 in l...    48   0.32   1
(BX465848) Zebrafish DNA sequence from clone RP71-84E6.            48   0.32   1
(BX465205) Zebrafish DNA sequence from clone CH211-197E7 in ...    48   0.32   1
(AC087422) Caenorhabditis briggsae cosmid CB033P12, complete...    48   0.32   1
(CR933099) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.32   1
(BX855611) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    48   0.32   1
(AC176735) Strongylocentrotus purpuratus clone R3-3096O8, WO...    48   0.32   1
(EK529440) 1095516002842 Global-Ocean-Sampling_GS-32-01-01-1...    48   0.32   1
(DU931635) 355825 Tomato EcoRI BAC Library Solanum lycopersi...    48   0.32   1
(DU421741) 1098421116419 CHORI-243 Ovis aries genomic clone ...    48   0.32   1
(CE496640) tigr-gss-dog-17000310309807 Dog Library Canis lup...    48   0.32   1
(CE464985) tigr-gss-dog-17000363465862 Dog Library Canis lup...    48   0.32   1
(AC153567) Mus musculus 10 BAC RP23-187C5 (Roswell Park Canc...    40   0.41   5
(CU914651) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.46   2
(AC117080) Dictyostelium discoideum chromosome 2 map complem...    34   0.54   4
(AC180924) Strongylocentrotus purpuratus clone R3-3064B18, W...    36   0.64   4
(AC024751) Caenorhabditis elegans cosmid Y18H1A, complete se...    40   0.79   2
(AC170540) Bos taurus clone CH240-232A20, WORKING DRAFT SEQU...    34   0.82   5
(AF267223) Candidatus Carsonella ruddii natural-host Russell...    34   0.87   2
(CL736376) OR_BBa0070D21.f OR_BBa Oryza nivara genomic clone...    36   0.90   2
(EJ416351) 1093012184822 Global-Ocean-Sampling_GS-28-01-01-1...    36   0.90   2
(EI229481) OR__Ba0024J04.f OR__Ba Oryza rufipogon genomic cl...    36   0.92   2
(EI328409) GM_WBc0066M03.r GM_WBc Glycine max genomic clone ...    32   0.92   2
(BX248583) Blochmannia floridanus complete genome.                 36   1.0    10
(CU280673) Zebrafish DNA sequence from clone DKEY-188L18.          46   1.3    1
(CT025908) Zebrafish DNA sequence from clone CH211-163B1 in ...    46   1.3    1
(CR792455) Zebrafish DNA sequence from clone DKEY-283J20 in ...    46   1.3    1
(CR388413) Zebrafish DNA sequence from clone DKEY-270B7 in l...    46   1.3    1
(CR377226) Zebrafish DNA sequence from clone DKEY-120I4 in l...    46   1.3    1
(BX957333) Zebrafish DNA sequence from clone CH211-10M5 in l...    46   1.3    1
(BX928743) Zebrafish DNA sequence from clone DKEY-78K22 in l...    46   1.3    1
(BX908396) Zebrafish DNA sequence from clone CH211-267G5 in ...    46   1.3    1
(BX901981) Zebrafish DNA sequence from clone DKEY-35M24 in l...    46   1.3    1
(BX548157) Zebrafish DNA sequence from clone CH211-201B11 in...    46   1.3    1
(BX539341) Zebrafish DNA sequence from clone DKEY-3P4 in lin...    46   1.3    1
(BX469933) Zebrafish DNA sequence from clone CH211-207E19 in...    46   1.3    1
(BX465195) Zebrafish DNA sequence from clone DKEY-246J6 in l...    46   1.3    1
(BX324003) Zebrafish DNA sequence from clone DKEY-81I14 in l...    46   1.3    1
(BX005326) Zebrafish DNA sequence from clone CH211-120C15.         46   1.3    1
(BX005042) Zebrafish DNA sequence from clone CH211-119F9 in ...    46   1.3    1
(BX000477) Zebrafish DNA sequence from clone CH211-59D8 in l...    46   1.3    1
(AL845359) Zebrafish DNA sequence from clone CH211-11M22 in ...    46   1.3    1
(BV279638) S232P6303FB10.T0 Beagle Canis familiaris STS geno...    46   1.3    1
(AM778094) Carica papaya Y chromosome sequence, clone PH 52H15.    46   1.3    1
(AM452589) Vitis vinifera contig VV78X066611.28, whole genom...    46   1.3    1
(AC215940) Populus trichocarpa clone POP034-C23, complete se...    46   1.3    1
(EU494071) Scaptomyza undulata voucher 109452 NADH dehydroge...    46   1.3    1
(EU494069) Scaptomyza frustulifera voucher 108518 NADH dehyd...    46   1.3    1
(EU494062) Drosophila soonae voucher 109458 NADH dehydrogena...    46   1.3    1
(EU494054) Drosophila mimica voucher 109331 NADH dehydrogena...    46   1.3    1
(EU494051) Drosophila kambysellisi voucher 105683 NADH dehyd...    46   1.3    1
(EU494041) Drosophila comatifemora voucher 109459 NADH dehyd...    46   1.3    1
(AC024761) Caenorhabditis elegans cosmid Y38C1AA, complete s...    46   1.3    1
(AC152664) Bos taurus clone CH240-11L14, WORKING DRAFT SEQUE...    46   1.3    1
(AC118334) Rattus norvegicus clone CH230-258M5, *** SEQUENCI...    46   1.3    1
(AC095163) Rattus norvegicus clone CH230-8K20, WORKING DRAFT...    46   1.3    1
(FP339586) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.3    1
(CT827843) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.3    1
(CT027592) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   1.3    1
(CT027590) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.3    1
(CT025932) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   1.3    1
(CR974433) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.3    1
(CR931804) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.3    1
(AC214579) Bos taurus clone CH240-11L14, WORKING DRAFT SEQUE...    46   1.3    1
(AC169687) Bos taurus clone CH240-215A16, WORKING DRAFT SEQU...    46   1.3    1
(AC164722) Bos taurus clone CH240-161O19, WORKING DRAFT SEQU...    46   1.3    1
(AC164675) Bos taurus clone CH240-98C4, WORKING DRAFT SEQUEN...    46   1.3    1
(AC006741) Caenorhabditis elegans clone Y38C1, *** SEQUENCIN...    46   1.3    1
(EK570155) 1095521072664 Global-Ocean-Sampling_GS-32-01-01-1...    46   1.3    1
(CT550901) A BAC library has been constructed from cultivar ...    46   1.3    1
(EH009154) PIC-B-0004 Sus Scrofa Adipocyte Zap Express Libra...    46   1.3    1
(EE967378) N30800A FNM Bos taurus cDNA clone N3080 5', mRNA ...    46   1.3    1
(EE362445) LB02981.CR_K12 GC_BGC-29 Bos taurus cDNA clone IM...    46   1.3    1
(EE333660) LB01732.CR_M20 GC_BGC-17 Bos taurus cDNA clone IM...    46   1.3    1
(EE226005) LB0187.CR_H01 GC_BGC-18 Bos taurus cDNA clone IMA...    46   1.3    1
(EE221515) LB01812.CR_J07 GC_BGC-18 Bos taurus cDNA clone IM...    46   1.3    1
(DY219464) 000308BSPB005746HT BSPB Bos taurus cDNA 5', mRNA ...    46   1.3    1
(DY139280) 000223BSPB002149HT BSPB Bos taurus cDNA 5', mRNA ...    46   1.3    1
(DY080041) 000228BSPB001919HT BSPB Bos taurus cDNA 5', mRNA ...    46   1.3    1
(DY054461) 000223BSPB002169HT BSPB Bos taurus cDNA 5', mRNA ...    46   1.3    1
(DV881220) LB02616.CR_O02 GC_BGC-26 Bos taurus cDNA clone IM...    46   1.3    1
(DV821407) LB0179.CR_D15 GC_BGC-17 Bos taurus cDNA clone IMA...    46   1.3    1
(DV819413) LB01728.CR_P18 GC_BGC-17 Bos taurus cDNA clone IM...    46   1.3    1
(DN380860) LIB38533_009_B03_T7_1 LIB38533 Canis lupus famili...    46   1.3    1
(CK960950) 4102234 BARC 10BOV Bos taurus cDNA clone 10BOV9_M...    46   1.3    1
(CF176800) 805214 MARC 3PIG Sus scrofa cDNA 5', mRNA sequence.     46   1.3    1
(CB428380) 604080 MARC 6BOV Bos taurus cDNA 5', mRNA sequence.     46   1.3    1
(BP172573) Sus scrofa mRNA, clone:UTR010018G01, 5' end, expr...    46   1.3    1
(EW106000) reep16c_h10.y1 eep Sus scrofa cDNA 5', mRNA seque...    46   1.3    1
(EW104193) reep16c_h14.y1 eep Sus scrofa cDNA 5', mRNA seque...    46   1.3    1
(AM432488) Vitis vinifera contig VV78X266022.4, whole genome...    40   1.3    2
(BH722823) BOMDN54TR BO_2_3_KB Brassica oleracea genomic clo...    42   1.5    2
(FC318278) CAIC664.rev CAIC Nematostella vectensis Nemve who...    40   1.8    2
(FG648482) G1142P37FD20.T0 Anolis carolinensis pooled normal...    40   2.0    2
(AC006721) Caenorhabditis elegans clone Y18H1, *** SEQUENCIN...    40   2.0    3
(AX347043) Sequence 2114 from Patent WO0200928.                    36   2.1    3
(AC068066) Mus musculus strain C57BL6/J chromosome 6 clone R...    40   2.1    5
(AC176098) Strongylocentrotus purpuratus clone R3-24E23, WOR...    38   2.4    3
(EJ454658) 1093016071776 Global-Ocean-Sampling_GS-28-01-01-1...    36   2.5    2
(AC130862) Rattus norvegicus clone CH230-233G22, WORKING DRA...    34   2.5    2
(EJ837394) 1093017679395 Global-Ocean-Sampling_GS-30-02-01-1...    42   2.5    2
(CU406977) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   2.5    2
(AC139445) Rattus norvegicus clone CH230-244I5, WORKING DRAF...    34   2.5    2
(AC006916) Caenorhabditis elegans clone Y9C9, *** SEQUENCING...    40   2.6    3
(AC176539) Strongylocentrotus purpuratus clone R3-3075N03, W...    40   2.7    5
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    32   2.8    10
(AF298204) Dictyostelium discoideum gypsy-like LTR retrotran...    40   3.0    2
(AC189405) Brassica rapa subsp. pekinensis clone KBrB058M10,...    40   3.1    5
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   3.1    8
(AC006881) Caenorhabditis elegans clone Y55F3X, *** SEQUENCI...    36   3.1    5
(AC113931) Homo sapiens chromosome 16 clone CTD-2330P21, com...    40   3.2    2
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       32   3.3    7
(BH150267) ENTQK01TR Entamoeba histolytica Sheared DNA Entam...    32   3.3    2
(AZ685904) ENTIC76TF Entamoeba histolytica Sheared DNA Entam...    32   3.4    2
(BZ474213) BONED93TF BO_1.6_2_KB_tot Brassica oleracea genom...    32   3.4    2
(CT954327) Mouse DNA sequence from clone RP24-537H9 on chrom...    42   3.5    2
(AC177483) Strongylocentrotus purpuratus clone R3-1030B6, WO...    40   3.6    2
(BX511147) Zebrafish DNA sequence from clone DKEYP-36E3 in l...    34   3.9    6
(AC124551) Mus musculus BAC clone RP23-217K11 from 16, compl...    42   3.9    3
(AC161452) Mus musculus BAC clone RP23-411L11 from chromosom...    42   4.1    3
(CR938710) Medicago truncatula chromosome 5 clone mth2-170k9...    36   4.3    4
(AC189339) Brassica rapa subsp. pekinensis clone KBrB041J04,...    42   4.3    2
(AP005663) Homo sapiens genomic DNA, chromosome 8q24, clone:...    40   4.6    2
(CR382384) Zebrafish DNA sequence from clone CH211-15B7 in l...    44   5.1    1
(BK006339) TPA_exp: Drosophila mojavensis mitochondrion, com...    44   5.1    1
(BV605691) S215P61242FE4.T0 Clara Pan troglodytes troglodyte...    44   5.1    1
(CT009748) Mouse DNA sequence from clone RP23-120N6 on chrom...    44   5.1    1
(AC139942) Mus musculus BAC clone RP23-447N11 from 3, comple...    44   5.1    1
(AC118607) Mus musculus chromosome 14, clone RP23-479D1, com...    44   5.1    1
(AM476805) Vitis vinifera, whole genome shotgun sequence, co...    44   5.1    1
(AM475869) Vitis vinifera contig VV78X210165.5, whole genome...    44   5.1    1
(AM472325) Vitis vinifera contig VV78X174439.5, whole genome...    44   5.1    1
(AM465159) Vitis vinifera contig VV78X246555.3, whole genome...    44   5.1    1
(AM423586) Vitis vinifera contig VV78X035788.5, whole genome...    44   5.1    1
(AC235256) Glycine max strain Williams 82 clone GM_WBb0037K1...    44   5.1    1
(DD010736) Diagnosis of known genetic Parameters within the ...    44   5.1    1
(AX344566) Sequence 17 from Patent WO0200932.                      44   5.1    1
(GP385053) Sequence 31785 from patent US 7511127.                  44   5.1    1
(GP098228) Sequence 31785 from patent US 7468248.                  44   5.1    1
(GC700549) Sequence 15794 from patent US 6812339.                  44   5.1    1
(FN368239) Schistosoma mansoni genome sequence supercontig S...    44   5.1    1
(EU494036) Drosophila ambochila voucher 109433.1 NADH dehydr...    44   5.1    1
(EU494000) Drosophila mojavensis voucher 106302 NADH dehydro...    44   5.1    1
(AB120097) Neomicropteryx sp. 4-YK-2003 mitochondrial ND5 ge...    44   5.1    1
(AB120095) Neomicropteryx sp. 2-YK-2003 mitochondrial ND5 ge...    44   5.1    1
(AB120094) Neomicropteryx sp. 1-YK-2003 mitochondrial ND5 ge...    44   5.1    1
(AB120092) Neomicropteryx cornuta mitochondrial ND5 gene for...    44   5.1    1
(AB120091) Neomicropteryx elongata mitochondrial ND5 gene fo...    44   5.1    1
(AB120090) Neomicropteryx bifurca mitochondrial ND5 gene for...    44   5.1    1
(AB120089) Neomicropteryx nipponensis mitochondrial ND5 gene...    44   5.1    1
(AB120088) Neomicropteryx nipponensis mitochondrial ND5 gene...    44   5.1    1
(AB120087) Neomicropteryx nipponensis mitochondrial ND5 gene...    44   5.1    1
(AB120086) Neomicropteryx matsumurana mitochondrial ND5 gene...    44   5.1    1
(AB120083) Neomicropteryx matsumurana mitochondrial ND5 gene...    44   5.1    1
(AB120082) Neomicropteryx matsumurana mitochondrial ND5 gene...    44   5.1    1
(AB120081) Neomicropteryx kazusana mitochondrial ND5 gene fo...    44   5.1    1
(AP003486) Homo sapiens genomic DNA, chromosome 11 clone:RP1...    44   5.1    1
(AP003078) Homo sapiens genomic DNA, chromosome 11q clone:CT...    44   5.1    1
(AP001881) Homo sapiens genomic DNA, chromosome 11q clone:RP...    44   5.1    1
(AP000824) Homo sapiens genomic DNA, chromosome 11 clone:RP1...    44   5.1    1
(AL591594) Human DNA sequence from clone RP11-424N15 on chro...    44   5.1    1
(AL389914) Human chromosome 14 DNA sequence BAC C-2307P3 of ...    44   5.1    1
(AL356800) Human chromosome 14 DNA sequence BAC R-97N10 of l...    44   5.1    1
(AC099757) Homo sapiens chromosome 1 clone RP11-523K4, compl...    44   5.1    1
(AC048342) Homo sapiens 12 BAC RP11-1043J7 (Roswell Park Can...    44   5.1    1
(AC008158) Homo sapiens chromosome 17, clone RP11-42F20, com...    44   5.1    1
(AC156663) Bos taurus clone CH240-66B17, WORKING DRAFT SEQUE...    44   5.1    1
(AC127125) Rattus norvegicus clone CH230-194K1, WORKING DRAF...    44   5.1    1
(AC108573) Rattus norvegicus clone CH230-174K21, WORKING DRA...    44   5.1    1
(AC106318) Rattus norvegicus clone CH230-219E4, *** SEQUENCI...    44   5.1    1
(AC094713) Rattus norvegicus clone CH230-5M3, *** SEQUENCING...    44   5.1    1
(CU928632) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.1    1
(CU914372) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.1    1
(AC091741) Homo sapiens chromosome 4 clone RP11-689E2, *** S...    44   5.1    1
(AC082646) Homo sapiens chromosome 8 clone RP11-346L16 map 8...    44   5.1    1
(AC068032) Homo sapiens clone RP11-265B2, WORKING DRAFT SEQU...    44   5.1    1
(AC055831) Homo sapiens chromosome 4 clone RP11-265B3 map 4,...    44   5.1    1
(AC026896) Homo sapiens chromosome 7 clone RP11-546P19 map 7...    44   5.1    1
(CU326384) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.1    1
(AP001890) Homo sapiens genomic DNA, chromosome 11q clone:RP...    44   5.1    1
(AL590557) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   5.1    1
(AC223617) Bos taurus clone CH240-463M19, WORKING DRAFT SEQU...    44   5.1    1
(AC218659) Bos taurus clone CH240-297O12, WORKING DRAFT SEQU...    44   5.1    1
(AC179408) Strongylocentrotus purpuratus clone R3-1101C14, W...    44   5.1    1
(AC175100) Bos taurus clone CH240-465D11, WORKING DRAFT SEQU...    44   5.1    1
(AC174963) Bos taurus clone CH240-461P4, WORKING DRAFT SEQUE...    44   5.1    1
(AC172684) Bos taurus clone CH240-246D16, WORKING DRAFT SEQU...    44   5.1    1
(AC025077) Homo sapiens clone RP11-169M9, WORKING DRAFT SEQU...    44   5.1    1
(AC023557) Homo sapiens chromosome 17 clone RP11-667M7 map 1...    44   5.1    1
(AC019359) Homo sapiens chromosome 15 clone RP11-736D3 map 1...    44   5.1    1
(AC018658) Homo sapiens chromosome 12 clone RP11-100N11, WOR...    44   5.1    1
(AZ042244) RPCI-23-295L13.TJ RPCI-23 Mus musculus genomic cl...    44   5.1    1
(FI008487) CHO_OF6902xj03r1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   5.1    1
(FH093874) CHO_OF3685xc16r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   5.1    1
(ER354744) 1092351028779 Global-Ocean-Sampling_GS-34-01-01-1...    44   5.1    1
(EJ899864) 1093018484482 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.1    1
(EJ890587) 1093018440034 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.1    1
(EJ839288) 1093017819565 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.1    1
(EJ257508) 1095349018366 Global-Ocean-Sampling_GS-27-01-01-1...    44   5.1    1
(DU455507) 1098415914798 CHORI-243 Ovis aries genomic clone ...    44   5.1    1
(DU177101) 1098553468283 CHORI-243 Ovis aries genomic clone ...    44   5.1    1
(CW956036) TcB46.2_F09_SP6 Tribolium BAC library Tribolium c...    44   5.1    1
(CT556001) A BAC library has been constructed from cultivar ...    44   5.1    1
(CT554059) A BAC library has been constructed from cultivar ...    44   5.1    1
(CE702091) tigr-gss-dog-17000368978839 Dog Library Canis lup...    44   5.1    1
(AG438303) Mus musculus molossinus DNA, clone:MSMg01-318I10....    44   5.1    1
(AG396490) Mus musculus molossinus DNA, clone:MSMg01-216L08....    44   5.1    1
(EH276599) Gp_mxAA_94A12_M13R mxA Gammarus pulex cDNA clone ...    44   5.1    1
(CA859484) EST633978 GVSP Glomus versiforme cDNA clone pGVSP...    44   5.1    1
(GR086132) CCIF17823.b1 CCIF Mimulus guttatus IM62 leaves (H...    44   5.1    1
(GO422147) EST_lbra_evt_1109242 lbraevt mixed_tissue Lernaeo...    44   5.1    1
(GO419567) EST_lbra_evt_1107261 lbraevt mixed_tissue Lernaeo...    44   5.1    1
(GO284003) CAXN4217.fwd CAXN Teleopsis dalmanni Late larval ...    44   5.1    1
(GO280406) CAXN1326.fwd CAXN Teleopsis dalmanni Late larval ...    44   5.1    1
(GO278657) CZAC3010.fwd CZAC Teleopsis dalmanni Late larval ...    44   5.1    1
(GE733174) CBUH690.g1 B.anynana_wing.LCPP_2-10kb Bicyclus an...    44   5.1    1
(FM943197) Brachionus plicatilis EST 5' end, clone sbs03P000...    44   5.1    1
(FM942475) Brachionus plicatilis EST 5' end, clone sbs02P000...    44   5.1    1
(FM938474) Brachionus plicatilis EST 5' end, clone sb104P004...    44   5.1    1
(FM916121) Brachionus plicatilis EST 5' end, clone sb102P002...    44   5.1    1
(FG300482) 1108793371534 New World Screwworm Larvae 9387 EST...    44   5.1    1
(FG300022) 1108793358663 New World Screwworm Larvae 9387 EST...    44   5.1    1
(FG298906) 1108793323573 New World Screwworm Larvae 9387 EST...    44   5.1    1
(FG295524) 1108770734276 New World Screwworm Larvae 9387 EST...    44   5.1    1
(FD524352) RUS75C05w HF Hordeum vulgare subsp. vulgare cDNA ...    44   5.1    1
(CP000551) Prochlorococcus marinus str. AS9601, complete gen...    44   5.1    1
(CU929465) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   5.1    4
(AC006280) Plasmodium falciparum chromosome 12 clone PFYAC72...    38   5.3    6
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    32   5.3    9
(AZ275780) RPCI-23-107M19.TJ RPCI-23 Mus musculus genomic cl...    36   5.3    2
(AC105171) Mus musculus clone RP24-170O9, WORKING DRAFT SEQU...    42   5.6    2
(GH623999) ESTRTADTMSD1_427 ESTRTADTMSD1 Camellia sinensis v...    36   6.0    2
(EJ629996) 1092963341194 Global-Ocean-Sampling_GS-29-01-01-1...    38   6.0    2
(AC219455) Bos taurus clone CH240-341B21, WORKING DRAFT SEQU...    40   6.1    2
(AE001362) Plasmodium falciparum 3D7 chromosome 2, complete ...    38   6.2    7
(EJ319522) 1095403341985 Global-Ocean-Sampling_GS-27-01-01-1...    32   6.3    3
(CU927945) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   6.3    5
(CU146129) Equus caballus GSS, BAC clone CH241-273M11, SP6 e...    40   6.4    2
(AM904731) Staphylococcus pseudintermedius SCCmec cassette, ...    38   6.6    3
(CS468856) Sequence 47 from Patent EP1748080.                      40   6.7    2
(CS468855) Sequence 46 from Patent EP1748080.                      40   6.7    2
(CS419333) Sequence 47 from Patent WO2006094836.                   40   6.7    2
(CS419332) Sequence 46 from Patent WO2006094836.                   40   6.7    2
(EJ158291) 1092344038002 Global-Ocean-Sampling_GS-27-01-01-1...    32   6.7    3
(AC120041) Homo sapiens chromosome 8, clone RP11-478M19, com...    40   6.9    3
(EJ217774) 1092351145152 Global-Ocean-Sampling_GS-27-01-01-1...    36   7.1    2
(AC217737) Heliconius erato clone BBAM-38G6, WORKING DRAFT S...    38   7.3    4
(AC211310) Populus trichocarpa clone POP017-I09, complete se...    34   7.3    5
(CV122842) OSTR30002E11 pDONR201 Entry vector Caenorhabditis...    36   7.4    2
(CC553453) CH240_459B11.TARBAC13P2 CHORI-240 Bos taurus geno...    34   7.4    2
(AC154716) Mus musculus BAC clone RP24-362G2 from chromosome...    36   7.4    6
(AC167301) Lemur catta clone LB2-129G6, WORKING DRAFT SEQUEN...    40   7.5    5
(AP009178) Nitratiruptor sp. SB155-2 genomic DNA, complete g...    32   7.8    2
(EK421673) 1095515512763 Global-Ocean-Sampling_GS-31-01-01-1...    40   7.9    2
(AM445601) Vitis vinifera, whole genome shotgun sequence, co...    42   7.9    2
(AC185705) Bos taurus clone RP42-164J18, WORKING DRAFT SEQUE...    34   8.1    7
(CT560521) A BAC library has been constructed from cultivar ...    40   8.1    2
(EJ225341) 1092351419261 Global-Ocean-Sampling_GS-27-01-01-1...    34   8.1    2
(BH721364) BOMNY60TR BO_2_3_KB Brassica oleracea genomic clo...    34   8.1    2
(EJ730510) 1092960095967 Global-Ocean-Sampling_GS-30-02-01-1...    34   8.1    2
(AC210503) Populus trichocarpa clone POP004-G08, complete se...    36   8.2    5
(CZ999966) 216234 Tomato MboI BAC Library Solanum lycopersic...    36   8.2    2
(CU914163) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   8.3    3
(AC024805) Caenorhabditis elegans cosmid Y51H7C, complete se...    36   8.3    2
(CZ987935) 202765 Tomato MboI BAC Library Solanum lycopersic...    38   8.4    2
(CC543884) CH240_425J18.T7 CHORI-240 Bos taurus genomic clon...    34   8.5    2
(EJ686986) 1092955191825 Global-Ocean-Sampling_GS-30-02-01-1...    34   8.7    2
(AC234740) Brassica rapa subsp. pekinensis clone KBrH014J09,...    38   9.1    6
(AC169001) Lemur catta clone LB2-139N8, WORKING DRAFT SEQUEN...    40   9.2    4
(AL772348) Mouse DNA sequence from clone RP23-316A19 on chro...    32   9.2    2
(AC091986) Homo sapiens chromosome 5 clone RP11-68K1, comple...    34   9.2    3
(EJ556466) 1092959503475 Global-Ocean-Sampling_GS-29-01-01-1...    38   9.4    2
(CP000979) Borrelia duttonii Ly plasmid pl165, complete sequ...    40   9.5    3
(AC006846) Caenorhabditis elegans clone Y119C1Z, *** SEQUENC...    32   9.9    6
(AL136219) Human DNA sequence from clone RP11-149B7 on chrom...    38   9.9    3

>(AU037969) Dictyostelium discoideum slug cDNA, clone SSH109.
          Length = 493

 Score =  420 bits (212), Expect(2) = 0.0
 Identities = 218/218 (100%)
 Strand = Plus / Plus


Query: 182 acttggaacccatctttttatgtattatgaagcaagagctgattttgatccaaaaattga 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 acttggaacccatctttttatgtattatgaagcaagagctgattttgatccaaaaattga 241


Query: 242 tttccaaaaatatacagaattaacnccaaaagcaaatgaatgggataacttaatgngaaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tttccaaaaatatacagaattaacnccaaaagcaaatgaatgggataacttaatgngaaa 301


Query: 302 atttcaacaaaaaatatctgatattccagaaaatcaattaggtgaatggtggagtccaat 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atttcaacaaaaaatatctgatattccagaaaatcaattaggtgaatggtggagtccaat 361


Query: 362 ggatttagtttatgatttggattggtttaaacaacaac 399
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ggatttagtttatgatttggattggtttaaacaacaac 399

 Score =  319 bits (161), Expect(2) = 0.0
 Identities = 161/161 (100%)
 Strand = Plus / Plus


Query: 1   atcaattatttaaaataaaatttaaaatggatagttgtgattataaatcatatgcacagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atcaattatttaaaataaaatttaaaatggatagttgtgattataaatcatatgcacagg 60


Query: 61  cattagatttagttaatgataaagaattaattgaagaatataagaaatatcataaaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cattagatttagttaatgataaagaattaattgaagaatataagaaatatcataaaaatg 120


Query: 121 tttggaaagaagtaaatgaagcattatgctcaataggaatt 161
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttggaaagaagtaaatgaagcattatgctcaataggaatt 161

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 624,425,684
Number of extensions: 43005900
Number of successful extensions: 4156448
Number of sequences better than 10.0: 295
Length of query: 492
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 469
Effective length of database: 102,190,702,835
Effective search space: 47927439629615
Effective search space used: 47927439629615
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 8. 1
Homology vs Protein 
Query= Contig-U05306-1 (Contig-U05306-1Q) /CSM_Contig/Contig-U05306-1Q.Seq.d
         (492 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q556R9) RecName: Full=UPF0734 protein DDB_G0273871/DDB_G0273177...   258   4e-68
CP001326_348(CP001326|pid:none) Micromonas sp. RCC299 chromosome...   114   1e-24
CP001275_243(CP001275|pid:none) Thermomicrobium roseum DSM 5159,...    92   9e-18
CU207366_1680(CU207366|pid:none) Gramella forsetii KT0803 comple...    75   6e-13
CP000586_21(CP000586|pid:none) Ostreococcus lucimarinus CCE9901 ...    75   8e-13
AE015928_3664(AE015928|pid:none) Bacteroides thetaiotaomicron VP...    75   1e-12
AE015928_1276(AE015928|pid:none) Bacteroides thetaiotaomicron VP...    73   3e-12
CP000139_188(CP000139|pid:none) Bacteroides vulgatus ATCC 8482, ...    72   5e-12
CP001636_21(CP001636|pid:none) Variovorax paradoxus S110 chromos...    72   7e-12
CP000139_211(CP000139|pid:none) Bacteroides vulgatus ATCC 8482, ...    70   2e-11
CP000826_639(CP000826|pid:none) Serratia proteamaculans 568, com...    70   4e-11
CP000267_3085(CP000267|pid:none) Rhodoferax ferrireducens T118, ...    69   6e-11
CR626927_2527(CR626927|pid:none) Bacteroides fragilis NCTC 9343,...    68   1e-10
AP006841_2588(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,...    67   2e-10
AE008923_4132(AE008923|pid:none) Xanthomonas axonopodis pv. citr...    64   1e-09
CP001503_1717(CP001503|pid:none) Burkholderia glumae BGR1 chromo...    60   2e-08
AM039952_4288(AM039952|pid:none) Xanthomonas campestris pv. vesi...    59   6e-08
CP000547_1757(CP000547|pid:none) Burkholderia mallei NCTC 10247 ...    55   7e-07
AE008922_4014(AE008922|pid:none) Xanthomonas campestris pv. camp...    55   1e-06
AE013598_328(AE013598|pid:none) Xanthomonas oryzae pv. oryzae KA...    54   2e-06
CP000967_4789(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P...    53   3e-06
AC2922(AC2922) conserved hypothetical protein Atu2812 [imported]...    50   2e-05
CP000927_1535(CP000927|pid:none) Caulobacter sp. K31, complete g...    49   5e-05
BA000012_5627(BA000012|pid:none) Mesorhizobium loti MAFF303099 D...    47   2e-04
AE014291_231(AE014291|pid:none) Brucella suis 1330 chromosome I,...    47   3e-04
CP000758_313(CP000758|pid:none) Ochrobactrum anthropi ATCC 49188...    45   7e-04
AE008917_1710(AE008917|pid:none) Brucella melitensis 16M chromos...    45   0.001
CP000025_526(CP000025|pid:none) Campylobacter jejuni RM1221, com...    45   0.001
CT573326_882(CT573326|pid:none) Pseudomonas entomophila str. L48...    45   0.001
AB3026(AB3026) conserved hypothetical protein Atu3814 [imported]...    44   0.002
AL111168_455(AL111168|pid:none) Campylobacter jejuni subsp. jeju...    44   0.002
CP000685_4084(CP000685|pid:none) Flavobacterium johnsoniae UW101...    44   0.003
AL445065_93(AL445065|pid:none) Thermoplasma acidophilum complete...    43   0.004
AL591985_699(AL591985|pid:none) Sinorhizobium meliloti 1021 plas...    43   0.005
CP000768_1206(CP000768|pid:none) Campylobacter jejuni subsp. doy...    42   0.006
CP000376_361(CP000376|pid:none) Silicibacter sp. TM1040 mega pla...    41   0.017
CP000628_3005(CP000628|pid:none) Agrobacterium radiobacter K84 c...    40   0.039
CP001337_3209(CP001337|pid:none) Chloroflexus aggregans DSM 9485...    39   0.051
CP000804_3367(CP000804|pid:none) Roseiflexus castenholzii DSM 13...    39   0.066
AL713629_4(AL713629|pid:none) Aspergillus fumigatus BAC AFA5C11.       39   0.087
AP007161_520(AP007161|pid:none) Aspergillus oryzae RIB40 genomic...    37   0.25
AE017348_198(AE017348|pid:none) Cryptococcus neoformans var. neo...    37   0.33
AE014185_221(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...    35   0.73
CP000454_3282(CP000454|pid:none) Arthrobacter sp. FB24, complete...    35   1.2
CP001656_2726(CP001656|pid:none) Paenibacillus sp. JDR-2, comple...    34   1.6
CP001324_715(CP001324|pid:none) Micromonas sp. RCC299 chromosome...    34   2.1
AL606992_7(AL606992|pid:none) Oryza sativa genomic DNA, chromoso...    34   2.1
CP000750_797(CP000750|pid:none) Kineococcus radiotolerans SRS302...    34   2.1
CP001618_3588(CP001618|pid:none) Beutenbergia cavernae DSM 12333...    34   2.1
CP000708_217(CP000708|pid:none) Brucella ovis ATCC 25840 chromos...    34   2.1
CP000686_2658(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    33   2.8
CP000361_891(CP000361|pid:none) Arcobacter butzleri RM4018, comp...    33   2.8
AL939105_50(AL939105|pid:none) Streptomyces coelicolor A3(2) com...    33   3.6
AC135258_9(AC135258|pid:none) Oryza sativa (japonica cultivar-gr...    33   3.6
(Q8Y3I9) RecName: Full=L-rhamnose mutarotase;          EC=5.1.3....    33   3.6
(Q926R3) RecName: Full=L-rhamnose mutarotase;          EC=5.1.3....    33   3.6
CP000029_2159(CP000029|pid:none) Staphylococcus epidermidis RP62...    33   3.6
AC147811_5(AC147811|pid:none) Oryza sativa (japonica cultivar-gr...    33   3.6
CP000542_2225(CP000542|pid:none) Verminephrobacter eiseniae EF01...    33   3.6
AB024550_3(AB024550|pid:none) Bacillus halodurans gene for GNTP ...    33   4.7
BA000030_7427(BA000030|pid:none) Streptomyces avermitilis MA-468...    33   4.7
AP008232_170(AP008232|pid:none) Sodalis glossinidius str. 'morsi...    33   4.7
AM494475_816(AM494475|pid:none) Orientia tsutsugamushi Boryong c...    32   6.2
CP001053_1657(CP001053|pid:none) Burkholderia phytofirmans PsJN ...    32   6.2
CR855028_2(CR855028|pid:none) Oryza sativa genomic DNA, chromoso...    32   6.2
(Q4L655) RecName: Full=Nuclease sbcCD subunit C;  &AP006716_1561...    32   6.2
AC134046_3(AC134046|pid:none) Oryza sativa (japonica cultivar-gr...    32   6.2
AL662960_10(AL662960|pid:none) Oryza sativa genomic DNA, chromos...    32   6.2
AL606609_2(AL606609|pid:none) Oryza sativa genomic DNA, chromoso...    32   6.2
AM238663_918(AM238663|pid:none) Streptomyces ambofaciens ATCC 23...    32   6.2
AL662999_16(AL662999|pid:none) Oryza sativa genomic DNA, chromos...    32   6.2
AC104271_8(AC104271|pid:none) Oryza sativa (japonica cultivar-gr...    32   6.2
AL606642_6(AL606642|pid:none) Oryza sativa genomic DNA, chromoso...    32   6.2
AE009951_740(AE009951|pid:none) Fusobacterium nucleatum subsp. n...    32   8.1
FN374758_1(FN374758|pid:none) Schistosoma mansoni genome sequenc...    32   8.1
CP000033_96(CP000033|pid:none) Lactobacillus acidophilus NCFM, c...    32   8.1
(Q13LW8) RecName: Full=L-rhamnose mutarotase;          EC=5.1.3....    32   8.1
EU910854_24(EU910854|pid:none) Uncultured bacterium 1042 genomic...    32   8.1
AC144735_10(AC144735|pid:none) Oryza sativa (japonica cultivar-g...    32   8.1

>(Q556R9) RecName: Full=UPF0734 protein DDB_G0273871/DDB_G0273177;
           &AC116984_101(AC116984|pid:none)
          Length = 125

 Score =  258 bits (660), Expect = 4e-68
 Identities = 120/121 (99%), Positives = 120/121 (99%)
 Frame = +3

Query: 27  MDSCDYKSYAQALDLVNDKELIEEYKKYHKNVWKEVNEALCSIGIKKMKIFLLGTHLFMY 206
           MDSCDYKSYAQALDLVNDKELIEEYKKYHKNVWKEVNEALCSIGIKKMKIFLLGTHLFMY
Sbjct: 1   MDSCDYKSYAQALDLVNDKELIEEYKKYHKNVWKEVNEALCSIGIKKMKIFLLGTHLFMY 60

Query: 207 YEARADFDPKIDFQKYTELTPKANEWDNLMXKFQQKISDIPENQLGEWWSPMDLVYDLDW 386
           YEARADFDPKIDFQKYTELTPKANEWDNLM KFQQKISDIPENQLGEWWSPMDLVYDLDW
Sbjct: 61  YEARADFDPKIDFQKYTELTPKANEWDNLMRKFQQKISDIPENQLGEWWSPMDLVYDLDW 120

Query: 387 F 389
           F
Sbjct: 121 F 121

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 616,490,904
Number of extensions: 10486227
Number of successful extensions: 27067
Number of sequences better than 10.0: 79
Number of HSP's gapped: 27027
Number of HSP's successfully gapped: 79
Length of query: 164
Length of database: 1,061,185,681
Length adjustment: 119
Effective length of query: 45
Effective length of database: 672,240,369
Effective search space: 30250816605
Effective search space used: 30250816605
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.60  gvh: 0.23  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for Contig-U05306-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0