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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05298-1
Contig ID Contig-U05298-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U05298-1 (Contig-U05298-1Q) /CSM_Contig/Contig-U05298-1Q.Seq.d
AAATATAAAATAAAAACTAAAATATCTTTTATTTTTAAATATTTATAAAA
TATCAAAAAGATATATAAAAAAAAATAAAAAATAAAAAATAAATAATAAA
ATTGTTGTACTATAAAAAAAAAATATATATATATATAAAAAATGAAATTA
AAAATTGGAATTGCATTATCAGTAATTGTTTTAGTTTGTTGTATAATTTC
TTTTGCATTACCATGGTATCAAATTGAAAAGAAAGAAACTAAAATACTAG
ACAAAGTTGTAAGTACAATATAGTTGGAAAAAATTCTCATGCCAAACTGA
TGGTGAAGATAAATTAACATTAAATTATGATGATGATGAAATTGATTCAA
ATTCAATTGCAACCAAACTTTGTGTTGCATCAGCTCTTGTAAATCCACTC
AGTGTTGATAATATTTCAAAAATTTTAAACTCTTCACTTAGTTTCTTGGT
AATTGCATCAGCTCTTGCTCTTGGTACTGCTCTTTTACAATTAATTCTTC
TTTTATCACCAAAATTATGCAGATCATGCGTTTGGAAACTTTTATGTATT
GGTTGTTCAATTGCAACCATTGTCATGTTATTCATATCATTCTTTACATT
TTTGGGTGCACCAAAAGCATTCTATGATGATACTGAAGTTCTTAGTGCCA
ATCTTCTTGGAGCATGTGAAGAGAGATGGTGTGATAAAATTATTGGTGAT
GACGATTATTTCAAATGGTTACCAGGTGGTGGATGGTGGTCAACCTTATG
TGGATGTTTTACTGCTTTGGTAGCTGGTATTGTCACATTAAGCTTCTCAC
AGATAAATAAAAAAATAAATAAAAGTATTTCGCGTTGATTTATTATTTAA
AAAAAAAAAAAAA
Gap no gap
Contig length 863
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1752404
End point 1751541
Strand (PLUS/MINUS) MINUS
Number of clones 7
Number of EST 8
Link to clone list U05298
List of clone(s) 

est1=SSL830F,1,681
est2=VSH348E,6,824
est3=VSJ781E,10,825
est4=VSD767E,12,767
est5=SSL830Z,131,851
est6=VSG873F,134,508
est7=SSL815E,173,864
est8=SSG863Z,339,862
Translated Amino Acid sequence 
nik*klkyllflniykiskryikknkk*kinnkivvl*kkniyiykk*n*klelhyq*lf
*fvv*fllhyhgiklkrkklky*tkl*VQYSWKKFSCQTDGEDKLTLNYDDDEIDSNSIA
TKLCVASALVNPLSVDNISKILNSSLSFLVIASALALGTALLQLILLLSPKLCRSCVWKL
LCIGCSIATIVMLFISFFTFLGAPKAFYDDTEVLSANLLGACEERWCDKIIGDDDYFKWL
PGGGWWSTLCGCFTALVAGIVTLSFSQINKKINKSISR*fii*kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kykiktkisfifkyl*nikkiykkk*kiknk**ncctikkkyiyi*kmklkigialsviv
lvcciisfalpwyqiekketkildkvvsti*lekilmpn*w*r*inikl****n*fkfnc
nqtlccissckstqc**yfknfklft*flgncisscswycsftinssfitkimqimrlet
fmywlfncnhchvihiilyifgctksil**y*ss*cqsswsm*remv**nyw**rlfqmv
trwwmvvnlmwmfycfgswychiklltdk*knk*kyfaliyylkkkk


Frame B:
nik*klkyllflniykiskryikknkk*kinnkivvl*kkniyiykk*n*klelhyq*lf
*fvv*fllhyhgiklkrkklky*tkl*VQYSWKKFSCQTDGEDKLTLNYDDDEIDSNSIA
TKLCVASALVNPLSVDNISKILNSSLSFLVIASALALGTALLQLILLLSPKLCRSCVWKL
LCIGCSIATIVMLFISFFTFLGAPKAFYDDTEVLSANLLGACEERWCDKIIGDDDYFKWL
PGGGWWSTLCGCFTALVAGIVTLSFSQINKKINKSISR*fii*kkkk


Frame C:
i*nkn*nifyf*ifikyqkdi*kkiknkk*iikllyykkkiyiyikneiknwnciisncf
sllynffcitmvsn*kern*ntrqsckynivgknshaklmvkin*h*immmmkliqiqlq
pnfvlhqll*ihsvliifqkf*tlhlvsw*lhqllllvllfyn*fffyhqnyadhafgnf
yvlvvqlqplscysyhslhfwvhqkhsmmilkflvpiflehvkrdgvikllvmtiisngy
qvvdggqpyvdvlllw*lvlsh*ashr*ikk*ikvfrvdllfkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05298-1 (Contig-U05298-1Q)
/CSM_Contig/Contig-U05298-1Q.Seq.d
         (863 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05298-1 (Contig-U05298-1Q) /CSM_Contig/Conti...  1285  0.0
Contig-U10246-1 (Contig-U10246-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U09396-1 (Contig-U09396-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U14254-1 (Contig-U14254-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U13585-1 (Contig-U13585-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U12316-1 (Contig-U12316-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U10766-1 (Contig-U10766-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U02808-1 (Contig-U02808-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U13662-1 (Contig-U13662-1Q) /CSM_Contig/Conti...    36  0.061
Contig-U13612-1 (Contig-U13612-1Q) /CSM_Contig/Conti...    36  0.061

>Contig-U05298-1 (Contig-U05298-1Q) /CSM_Contig/Contig-U05298-1Q.Seq.d
          Length = 863

 Score = 1285 bits (648), Expect = 0.0
 Identities = 648/648 (100%)
 Strand = Plus / Plus

                                                                       
Query: 155 ttggaattgcattatcagtaattgttttagtttgttgtataatttcttttgcattaccat 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ttggaattgcattatcagtaattgttttagtttgttgtataatttcttttgcattaccat 214

                                                                       
Query: 215 ggtatcaaattgaaaagaaagaaactaaaatactagacaaagttgtaagtacaatatagt 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ggtatcaaattgaaaagaaagaaactaaaatactagacaaagttgtaagtacaatatagt 274

                                                                       
Query: 275 tggaaaaaattctcatgccaaactgatggtgaagataaattaacattaaattatgatgat 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tggaaaaaattctcatgccaaactgatggtgaagataaattaacattaaattatgatgat 334

                                                                       
Query: 335 gatgaaattgattcaaattcaattgcaaccaaactttgtgttgcatcagctcttgtaaat 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gatgaaattgattcaaattcaattgcaaccaaactttgtgttgcatcagctcttgtaaat 394

                                                                       
Query: 395 ccactcagtgttgataatatttcaaaaattttaaactcttcacttagtttcttggtaatt 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ccactcagtgttgataatatttcaaaaattttaaactcttcacttagtttcttggtaatt 454

                                                                       
Query: 455 gcatcagctcttgctcttggtactgctcttttacaattaattcttcttttatcaccaaaa 514
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gcatcagctcttgctcttggtactgctcttttacaattaattcttcttttatcaccaaaa 514

                                                                       
Query: 515 ttatgcagatcatgcgtttggaaacttttatgtattggttgttcaattgcaaccattgtc 574
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ttatgcagatcatgcgtttggaaacttttatgtattggttgttcaattgcaaccattgtc 574

                                                                       
Query: 575 atgttattcatatcattctttacatttttgggtgcaccaaaagcattctatgatgatact 634
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 atgttattcatatcattctttacatttttgggtgcaccaaaagcattctatgatgatact 634

                                                                       
Query: 635 gaagttcttagtgccaatcttcttggagcatgtgaagagagatggtgtgataaaattatt 694
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gaagttcttagtgccaatcttcttggagcatgtgaagagagatggtgtgataaaattatt 694

                                                                       
Query: 695 ggtgatgacgattatttcaaatggttaccaggtggtggatggtggtcaaccttatgtgga 754
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ggtgatgacgattatttcaaatggttaccaggtggtggatggtggtcaaccttatgtgga 754

                                                           
Query: 755 tgttttactgctttggtagctggtattgtcacattaagcttctcacag 802
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tgttttactgctttggtagctggtattgtcacattaagcttctcacag 802


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 825 gtatttcgcgttgatttattattt 848
           ||||||||||||||||||||||||
Sbjct: 825 gtatttcgcgttgatttattattt 848


>Contig-U10246-1 (Contig-U10246-1Q) /CSM_Contig/Contig-U10246-1Q.Seq.d
          Length = 1100

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 330 atgatgatgaaattgattcaa 350
           |||||||||||||||||||||
Sbjct: 232 atgatgatgaaattgattcaa 212


>Contig-U09396-1 (Contig-U09396-1Q) /CSM_Contig/Contig-U09396-1Q.Seq.d
          Length = 1346

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 327 atgatgatgatgaaattgat 346
           ||||||||||||||||||||
Sbjct: 784 atgatgatgatgaaattgat 765


 Score = 30.2 bits (15), Expect = 3.7
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                              
Query: 327 atgatgatgatgaaattga 345
           |||||||||||||| ||||
Sbjct: 889 atgatgatgatgaagttga 871


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,373
Number of Sequences: 6905
Number of extensions: 13373
Number of successful extensions: 2334
Number of sequences better than 10.0: 206
length of query: 863
length of database: 5,674,871
effective HSP length: 16
effective length of query: 847
effective length of database: 5,564,391
effective search space: 4713039177
effective search space used: 4713039177
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7.18
Homology vs DNA 
Query= Contig-U05298-1 (Contig-U05298-1Q) /CSM_Contig/Contig-U05298-1Q.Seq.d
         (863 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU270469) Dictyostelium discoideum vegetative cDNA clone:VS...  1041   0.0    2
(AU264547) Dictyostelium discoideum vegetative cDNA clone:VS...   989   0.0    2
(AU267306) Dictyostelium discoideum vegetative cDNA clone:VS...   995   0.0    1
(C84865) Dictyostelium discoideum slug cDNA, clone SSG863.        888   0.0    2
(C93873) Dictyostelium discoideum slug cDNA, clone SSL815.        337   0.0    7
(AU266887) Dictyostelium discoideum vegetative cDNA clone:VS...   468   0.0    2
(C93887) Dictyostelium discoideum slug cDNA, clone SSL830.        196   e-159  9
(AU264546) Dictyostelium discoideum vegetative cDNA clone:VS...   383   e-156  2
(AU267305) Dictyostelium discoideum vegetative cDNA clone:VS...   216   e-107  2
(AU270468) Dictyostelium discoideum vegetative cDNA clone:VS...   216   e-106  2
(AU074775) Dictyostelium discoideum slug cDNA, clone SSL830.      170   6e-38  1
(EX642061) 256642783 Pea aphid whole body normalized full le...    36   0.18   3
(AC007876) Homo sapiens BAC clone RP11-65G9 from Y, complete...    36   0.33   2
(EX624819) 255429641 Pea aphid whole body normalized full le...    34   0.56   3
(FF305848) 279364314 Pea aphid whole body normalized full le...    34   0.58   3
(AC102763) Mus musculus chromosome 8, clone RP24-500B21, com...    48   0.58   1
(ED820793) MUGQ_CH252P149E08T7_CN165_028 CHORI-252 Vervet Mo...    48   0.58   1
(AP008934) Staphylococcus saprophyticus subsp. saprophyticus...    48   0.58   1
(FF301096) 279343470 Pea aphid whole body normalized full le...    34   0.58   3
(EX651051) 256750054 Pea aphid whole body normalized full le...    34   0.59   3
(EX625183) 255429763 Pea aphid whole body normalized full le...    34   0.61   3
(FF305454) 279362474 Pea aphid whole body normalized full le...    34   0.62   3
(FF296091) 279309414 Pea aphid whole body normalized full le...    34   0.62   3
(FF313936) 279392001 Pea aphid whole body normalized full le...    34   0.63   3
(EX634049) 256593197 Pea aphid whole body normalized full le...    34   0.64   3
(EX620556) 255411564 Pea aphid whole body normalized full le...    34   0.65   3
(FF329724) 280441559 Pea aphid whole body normalized full le...    34   0.66   3
(CT573472) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   1.2    2
(BX908773) Zebrafish DNA sequence from clone DKEY-3F22 in li...    34   1.3    2
(AM426983) Vitis vinifera contig VV78X014137.24, whole genom...    38   1.5    3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    34   1.6    12
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    32   1.8    10
(AC202324) Medicago truncatula clone mth2-160m22, WORKING DR...    38   2.0    5
(AC218137) MACACA MULATTA BAC clone CH250-311C6 from chromos...    46   2.3    1
(DL268957) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS.       46   2.3    1
(DJ135406) Method for identification of useful proteins deri...    46   2.3    1
(HA144325) Sequence 6026 from Patent WO2006024892.                 46   2.3    1
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete...    46   2.3    1
(AC233360) Solanum tuberosum chromosome 5 clone RH016N18, **...    46   2.3    1
(BX030739) Single read from an extremity of a full-length cD...    46   2.3    1
(BX030738) Single read from an extremity of a full-length cD...    46   2.3    1
(AZ931344) 474.dhz64g11.s1 Saccharomyces unisporus NRRL Y-15...    46   2.3    1
(AQ895504) HS_5419_A1_H02_SP6E RPCI-11 Human Male BAC Librar...    46   2.3    1
(CZ989374) 205439 Tomato MboI BAC Library Solanum lycopersic...    46   2.3    1
(AL933383) Anopheles gambiae EST, clone NAP1-P106-D-01-5.          46   2.3    1
(CJ998447) Saccharomyces pastorianus mRNA, clone: D133-66, 5...    46   2.3    1
(CJ996597) Saccharomyces pastorianus mRNA, clone: D010-42, 5...    46   2.3    1
(BY619515) Mus musculus visual cortex cDNA, RIKEN full-lengt...    46   2.3    1
(BX765123) Anopheles gambiae EST, clone AGCC634TR.                 46   2.3    1
(BX621584) Anopheles gambiae EST, clone ANGNP1113C09T7.            46   2.3    1
(BX607667) Anopheles gambiae EST, clone AGCC163TR.                 46   2.3    1
(BX467499) Anopheles gambiae EST, clone NAP1-P124-G-12-5.          46   2.3    1
(FG717446) G1144P324RD5.T0 Anolis carolinensis pooled normal...    46   2.3    1
(FG708970) G1144P315RP3.T0 Anolis carolinensis pooled normal...    46   2.3    1
(EY362503) CAWZ8284.rev CAWZ Helobdella robusta Primary Late...    46   2.3    1
(EY351880) CAWZ18352.rev CAWZ Helobdella robusta Primary Lat...    46   2.3    1
(EY348633) CAWZ1660.rev CAWZ Helobdella robusta Primary Late...    46   2.3    1
(EY341676) CAWZ11290.rev CAWZ Helobdella robusta Primary Lat...    46   2.3    1
(AZ685642) ENTIU41TF Entamoeba histolytica Sheared DNA Entam...    32   3.0    3
(AC216679) Populus trichocarpa clone ACSB1901-D09, complete ...    36   3.3    3
(AM468531) Vitis vinifera, whole genome shotgun sequence, co...    42   3.8    5
(CC329841) OGPBF47TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    34   4.3    2
(DX286247) OR_ABa0187P03.f OR_ABa Oryza ridleyi genomic clon...    40   5.0    2
(AC133904) Mus musculus chromosome 19, clone RP24-143J12, co...    36   5.2    5
(AC158778) Mus musculus chromosome 19, clone RP24-90P13, com...    36   5.6    5
(EI310663) GM_WBc0040P18.r GM_WBc Glycine max genomic clone ...    34   6.0    2
(CG177208) PUFWY95TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    34   6.6    2
(AP009598) Solanum lycopersicum DNA, chromosome 8, clone: C0...    38   6.6    4
(CG274996) OG1CV31TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    34   6.8    2
(CG177207) PUFWY95TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    34   7.0    2
(FF334805) 280457468 Pea aphid whole body normalized full le...    34   7.0    3
(AF346666) Oncorhynchus mykiss microsatellite OMM1002 sequence.    34   8.9    3
(BX649242) Zebrafish DNA sequence from clone DKEY-264C3 in l...    44   9.1    1
(AC111050) Mus musculus chromosome 3, clone RP24-66H10, comp...    44   9.1    1
(AP007166) Aspergillus oryzae RIB40 genomic DNA, SC113.            44   9.1    1
(AC189430) Brassica rapa subsp. pekinensis clone KBrB067F22,...    44   9.1    1
(AC171164) Medicago truncatula chromosome 2 BAC clone mte1-1...    44   9.1    1
(AC122716) Homo sapiens chromosome 5 clone RP11-567A12, comp...    44   9.1    1
(AC098594) Homo sapiens chromosome 4 clone RP11-465C6, compl...    44   9.1    1
(AC152132) Dasypus novemcinctus clone VMRC5-198J6, WORKING D...    44   9.1    1
(AC118801) Rattus norvegicus clone CH230-61P5, WORKING DRAFT...    44   9.1    1
(FP236816) Brassica rapa subsp. pekinensis clone KBrB106F13,...    44   9.1    1
(AC068882) Homo sapiens chromosome 4 clone RP11-465C6 map 4,...    44   9.1    1
(AC235750) Medicago truncatula clone mth2-59o14, WORKING DRA...    44   9.1    1
(AC217725) Solanum tuberosum chromosome 1 clone RH099H16, **...    44   9.1    1
(FI036985) CHO_OF6456xo02r1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   9.1    1
(FH344153) CHO_OF4631xg08f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   9.1    1
(FH325332) CHO_OF4552xn03r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   9.1    1
(FH282306) CHO_OF4188xm19f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   9.1    1
(FH158945) CHO_OF3155xi05r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   9.1    1
(FH125818) CHO_OF3317xb08f1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   9.1    1
(FH072049) CHO_OF3674xk16f1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   9.1    1
(ET961496) CHO_OF593xg07r1.ab1 CHO_OF Nicotiana tabacum geno...    44   9.1    1
(ET748058) CHO_OF287xg20r1.ab1 CHO_OF Nicotiana tabacum geno...    44   9.1    1
(ER575125) 1093015808660 Global-Ocean-Sampling_GS-36-01-01-2...    44   9.1    1
(EJ465847) 1095403007639 Global-Ocean-Sampling_GS-28-01-01-1...    44   9.1    1
(EJ164301) 1092344059498 Global-Ocean-Sampling_GS-27-01-01-1...    44   9.1    1
(EI212492) OR__Ba0001I24.r OR__Ba Oryza rufipogon genomic cl...    44   9.1    1
(ED464723) AUAC-aaa36e12.b1 Ascaris suum whole genome shotgu...    44   9.1    1
(BZ523646) BOKAC38TF BO_10_15_KB_nuc Brassica oleracea genom...    44   9.1    1
(AV312404) Mus musculus adult male thymus cDNA, RIKEN full-l...    44   9.1    1
(EB678482) KG9B.104K11F.060120T7 KG9B Nicotiana tabacum cDNA...    44   9.1    1
(EB444771) KR2B.104O07F.051227T7 KR2B Nicotiana tabacum cDNA...    44   9.1    1
(EB430418) KL5B.109A06F.060215T7 KL5B Nicotiana tabacum cDNA...    44   9.1    1
(DV159157) KG9B.005J14F.050721T7 KG9B Nicotiana tabacum cDNA...    44   9.1    1
(AI294193) LP07513.5prime LP Drosophila melanogaster larval-...    44   9.1    1
(BJ985318) Bombyx mori cDNA, clone:E_FL_mxg-_17A17_F_0, 5' e...    44   9.1    1
(GO600225) NBERO1CH_T3_001_E10_11APR2006_072 NBERO1CH Nicoti...    44   9.1    1
(GE827069) EST_omyk_evn_829644 omykevn RBC Oncorhynchus myki...    44   9.1    1
(GE549513) CCHS8336.b1_O20.ab1 CCHS Espina Barnadesia spinos...    44   9.1    1
(GE544266) CCHS3228.b1_H15.ab1 CCHS Espina Barnadesia spinos...    44   9.1    1
(GE541352) CCHS27753.b1_B03.ab1 CCHS Espina Barnadesia spino...    44   9.1    1
(GE541048) CCHS27462.b1_K02.ab1 CCHS Espina Barnadesia spino...    44   9.1    1
(GE538762) CCHS2516.b1_G06.ab1 CCHS Espina Barnadesia spinos...    44   9.1    1
(FG782479) G1147P354RC6.T0 Anolis carolinensis pooled normal...    44   9.1    1
(FG781166) G1147P354RA17.T0 Anolis carolinensis pooled norma...    44   9.1    1
(FD437194) Atr02b_47_G10_C011.b1 FGP Female Amborella tricho...    44   9.1    1
(AA102353) zl91c03.r1 Stratagene colon (#937204) Homo sapien...    44   9.1    1
(FP101884) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   9.1    3
(AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18...    32   9.1    7
(AC074119) Homo sapiens BAC clone RP11-573B16 from 7, comple...    34   9.5    5

>(AU270469) Dictyostelium discoideum vegetative cDNA clone:VSJ781,
           3' end single read.
          Length = 640

 Score = 1041 bits (525), Expect(2) = 0.0
 Identities = 528/529 (99%)
 Strand = Plus / Plus


Query: 262 agtacaatatagttggaaaaaattctcatgccaaactgatggtgaagataaattaacatt 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  agtacaatatagttggaaaaaattctcatgccaaactgatggtgaagataaattaacatt 133


Query: 322 aaattatgatgatgatgaaattgattcaaattcaattgcaaccaaactttgtgttgcatc 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 aaattatgatgatgatgaaattgattcaaattcaattgcaaccaaactttgtgttgcatc 193


Query: 382 agctcttgtaaatccactcagtgttgataatatttcaaaaattttaaactcttcacttag 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 agctcttgtaaatccactcagtgttgataatatttcaaaaattttaaactcttcacttag 253


Query: 442 tttcttggtaattgcatcagctcttgctcttggtactgctcttttacaattaattcttct 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tttcttggtaattgcatcagctcttgctcttggtactgctcttttacaattaattcttct 313


Query: 502 tttatcaccaaaattatgcagatcatgcgtttggaaacttttatgtattggttgttcaat 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tttatcaccaaaattatgcagatcatgcgtttggaaacttttatgtattggttgttcaat 373


Query: 562 tgcaaccattgtcatgttattcatatcattctttacatttttgggtgcaccaaaagcatt 621
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgcaaccattgtcatgttattcatatcattctttacatttttgggtgcaccaaaagcatt 433


Query: 622 ctatgatgatactgaagttcttagtgccaatcttcttggagcatgtgaagagagatggtg 681
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ctatgatgatactgaagttcttagtgccaatcttcttggagcatgtgaagagagatggtg 493


Query: 682 tgataaaattattggtgatgacgattatttcaaatggttaccaggtggtggatggtggtc 741
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tgataaaattattggtgatgacgattatttcaaatggttaccaggtggtggatggtggtc 553


Query: 742 aaccttatgtggatgttttactgctttggtagctggtattgtcacatta 790
           |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 554 aaccttatgtggatgttttactgctttggtagctggtattttcacatta 602

 Score =  147 bits (74), Expect(2) = 0.0
 Identities = 74/74 (100%)
 Strand = Plus / Plus


Query: 188 gttgtataatttcttttgcattaccatggtatcaaattgaaaagaaagaaactaaaatac 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gttgtataatttcttttgcattaccatggtatcaaattgaaaagaaagaaactaaaatac 60


Query: 248 tagacaaagttgta 261
           ||||||||||||||
Sbjct: 61  tagacaaagttgta 74

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 983,347,058
Number of extensions: 66770611
Number of successful extensions: 6215925
Number of sequences better than 10.0: 121
Length of query: 863
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 839
Effective length of database: 102,084,959,077
Effective search space: 85649280665603
Effective search space used: 85649280665603
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 8. 1
Homology vs Protein 
Query= Contig-U05298-1 (Contig-U05298-1Q) /CSM_Contig/Contig-U05298-1Q.Seq.d
         (863 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54KH5) RecName: Full=Uncharacterized transmembrane protein DDB...    37   1.1
AF127884_1(AF127884|pid:none) Callithrix jacchus olfactory recep...    34   7.2
AF127879_1(AF127879|pid:none) Callithrix jacchus olfactory recep...    34   7.2
AF127883_1(AF127883|pid:none) Callithrix jacchus olfactory recep...    34   7.2
(O13967) RecName: Full=1,3-beta-glucan synthase component bgs2; ...    33   9.5

>(Q54KH5) RecName: Full=Uncharacterized transmembrane protein
           DDB_G0287341;
          Length = 245

 Score = 36.6 bits (83), Expect = 1.1
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +2

Query: 530 VWKLLCIGCSIATIVMLFISFFTFLGAPKAFYDDTEVLSANLLGACEERWCDKIIGDDDY 709
           VW  + IG  + +  + FI+ F  +G P A  +D            + R+    IG++
Sbjct: 130 VWCYVLIGSPLVSFFLSFITLFLIIGIPSAVRNDCYKEYGKKFCNSQLRYHTSFIGENQV 189

Query: 710 FKWLPGGGW 736
           + W P  GW
Sbjct: 190 WLWGPSRGW 198

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,083,046,631
Number of extensions: 18975864
Number of successful extensions: 56026
Number of sequences better than 10.0: 5
Number of HSP's gapped: 56003
Number of HSP's successfully gapped: 5
Length of query: 287
Length of database: 1,061,185,681
Length adjustment: 127
Effective length of query: 160
Effective length of database: 646,092,785
Effective search space: 103374845600
Effective search space used: 103374845600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.62  gvh: 0.53  alm: 0.21  top: 0.73  tms: 0.20  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 16.0 %: vacuolar
	 16.0 %: plasma membrane
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for Contig-U05298-1 is end
VS (DIR, S) 4
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 3
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0