Contig-U05280-1
Contig ID Contig-U05280-1
Contig update 2001. 8.29
Contig sequence
>Contig-U05280-1 (Contig-U05280-1Q) /CSM_Contig/Contig-U05280-1Q.Seq.d
ATTTTCATAATCAGTATTATTTAAATAAGGGTTTTCTAAACAGAAATTCT
TTATATAGATATATTTTAAAAATATGGATAAAAGAGAAGAAGGAACAGTT
GAAGAACCATTAGATTTAATTAGATTAAGTTTAGATGAAAGAATTTTTGT
AAAAATGAGACAAGATAGAGAATTAAGAGGGAAATTACATGCATATGATC
AACATTTAAATATGATTTTATCAGATGTTGAAGAAACAATAAAGGTTGTA
GAAAAAGATGAGGAAACTGATGAAGAAATTATAAGAAATATTAAACGTAA
TATAAAGATGCTTTTTGTCCGTGGTGATGGTGTTATTTTAATTTCACCAC
CTTTAAGAACTTCGTAATTTTAAAATTAATCAATTATTAATTAGTGGTAG
AAATAAAATAAATAAATCAAATTTTATTGTTATTATTTTTGTAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA

Gap no gap
Contig length 519
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 7514039
End point 7514509
Strand (PLUS/MINUS) PLUS
Number of clones 4
Number of EST 6
Link to clone list U05280
List of clone(s)

est1=SSG722E,1,448
est2=VSK152F,23,454
est3=VSK152Z,23,415
est4=VSJ426F,31,444
est5=VSJ426Z,31,426
est6=VSE773Z,139,520
Translated Amino Acid sequence
fs*svlfk*gfskqkffi*IYFKNMDKREEGTVEEPLDLIRLSLDERIFVKMRQDRELRG
KLHAYDQHLNMILSDVEETIKVVEKDEETDEEIIRNIKRNIKMLFVRGDGVILISPPLRT
S*f*n*siin*w*k*nk*ikfycyyfckkkkkkkkkkkkkkkkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
ifiisii*irvf*teilyidif*kyg*krrrns*rtirfn*ikfr*knfcknetr*rikr
eitci*stfkydfirc*rnnkgcrkr*gn**rnykky*t*ykdafcpw*wcyfnfttfkn
fvilkliny*lvveik*inqillllfl*kkkkkkkkkkkkkkkkkkkkkkkkk


Frame B:
fs*svlfk*gfskqkffi*IYFKNMDKREEGTVEEPLDLIRLSLDERIFVKMRQDRELRG
KLHAYDQHLNMILSDVEETIKVVEKDEETDEEIIRNIKRNIKMLFVRGDGVILISPPLRT
S*f*n*siin*w*k*nk*ikfycyyfckkkkkkkkkkkkkkkkkkkkkkkkk


Frame C:
fhnqyylnkgflnrnslyryilkiwikekkeqlknh*i*ld*v*mkefl*k*dkien*eg
nymhmini*i*fyqmlkkq*rl*kkmrklmkkl*eilnvi*rcflsvvmvlf*fhhl*el
rnfkinqllisgrnkinksnfiviifvkkkkkkkkkkkkkkkkkkkkkkkkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05280-1 (Contig-U05280-1Q)
/CSM_Contig/Contig-U05280-1Q.Seq.d
(519 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05280-1 (Contig-U05280-1Q) /CSM_Contig/Conti... 876 0.0
Contig-U14467-1 (Contig-U14467-1Q) /CSM_Contig/Conti... 48 9e-06
Contig-U04338-1 (Contig-U04338-1Q) /CSM_Contig/Conti... 44 1e-04
Contig-U10471-1 (Contig-U10471-1Q) /CSM_Contig/Conti... 42 6e-04
Contig-U05639-1 (Contig-U05639-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U14350-1 (Contig-U14350-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U12585-1 (Contig-U12585-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U12214-1 (Contig-U12214-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U12213-1 (Contig-U12213-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U11859-1 (Contig-U11859-1Q) /CSM_Contig/Conti... 38 0.009

>Contig-U05280-1 (Contig-U05280-1Q) /CSM_Contig/Contig-U05280-1Q.Seq.d
Length = 519

Score = 876 bits (442), Expect = 0.0
Identities = 442/442 (100%)
Strand = Plus / Plus


Query: 1 attttcataatcagtattatttaaataagggttttctaaacagaaattctttatatagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attttcataatcagtattatttaaataagggttttctaaacagaaattctttatatagat 60


Query: 61 atattttaaaaatatggataaaagagaagaaggaacagttgaagaaccattagatttaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atattttaaaaatatggataaaagagaagaaggaacagttgaagaaccattagatttaat 120


Query: 121 tagattaagtttagatgaaagaatttttgtaaaaatgagacaagatagagaattaagagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tagattaagtttagatgaaagaatttttgtaaaaatgagacaagatagagaattaagagg 180


Query: 181 gaaattacatgcatatgatcaacatttaaatatgattttatcagatgttgaagaaacaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaaattacatgcatatgatcaacatttaaatatgattttatcagatgttgaagaaacaat 240


Query: 241 aaaggttgtagaaaaagatgaggaaactgatgaagaaattataagaaatattaaacgtaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaggttgtagaaaaagatgaggaaactgatgaagaaattataagaaatattaaacgtaa 300


Query: 301 tataaagatgctttttgtccgtggtgatggtgttattttaatttcaccacctttaagaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tataaagatgctttttgtccgtggtgatggtgttattttaatttcaccacctttaagaac 360


Query: 361 ttcgtaattttaaaattaatcaattattaattagtggtagaaataaaataaataaatcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttcgtaattttaaaattaatcaattattaattagtggtagaaataaaataaataaatcaa 420


Query: 421 attttattgttattatttttgt 442
||||||||||||||||||||||
Sbjct: 421 attttattgttattatttttgt 442


Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 365 taattttaaaatta 378
||||||||||||||
Sbjct: 378 taattttaaaatta 365


>Contig-U14467-1 (Contig-U14467-1Q) /CSM_Contig/Contig-U14467-1Q.Seq.d
Length = 974

Score = 48.1 bits (24), Expect = 9e-06
Identities = 27/28 (96%)
Strand = Plus / Plus


Query: 401 aaataaaataaataaatcaaattttatt 428
||||||||||||||||| ||||||||||
Sbjct: 281 aaataaaataaataaataaaattttatt 308


>Contig-U04338-1 (Contig-U04338-1Q) /CSM_Contig/Contig-U04338-1Q.Seq.d
Length = 768

Score = 44.1 bits (22), Expect = 1e-04
Identities = 22/22 (100%)
Strand = Plus / Minus


Query: 419 aaattttattgttattattttt 440
||||||||||||||||||||||
Sbjct: 23 aaattttattgttattattttt 2


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,860
Number of Sequences: 6905
Number of extensions: 19860
Number of successful extensions: 3210
Number of sequences better than 10.0: 1069
length of query: 519
length of database: 5,674,871
effective HSP length: 16
effective length of query: 503
effective length of database: 5,564,391
effective search space: 2798888673
effective search space used: 2798888673
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7.17
Homology vs DNA
Query= Contig-U05280-1 (Contig-U05280-1Q) /CSM_Contig/Contig-U05280-1Q.Seq.d
(519 letters)

Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C89979) Dictyostelium discoideum slug cDNA, clone SSG722. 722 0.0 1
(AU270722) Dictyostelium discoideum vegetative cDNA clone:VS... 678 0.0 1
(AU270721) Dictyostelium discoideum vegetative cDNA clone:VS... 678 0.0 1
(AU269898) Dictyostelium discoideum vegetative cDNA clone:VS... 662 0.0 1
(AU269897) Dictyostelium discoideum vegetative cDNA clone:VS... 662 0.0 1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 379 0.0 3
(AU263366) Dictyostelium discoideum vegetative cDNA clone:VS... 418 e-113 1
(FF445678) G178P60062RD5.T0 Acorn worm gastrula/neurula pCMV... 76 5e-24 4
(FF463566) G50P6210RD5.T0 Acorn worm gastrula/neurula pCMVSp... 76 5e-24 4
(FC807002) CBGC8670.fwd CBGC Lottia gigantea 15h 18h embryos... 92 3e-20 2
(FC721362) CBBG13994.fwd CBBG Lottia gigantea 12,15,18h embr... 92 3e-20 2
(FC652798) CAXW12674.fwd CAXW Lottia gigantea from female go... 92 3e-20 2
(FC805332) CBGC7069.fwd CBGC Lottia gigantea 15h 18h embryos... 92 3e-20 2
(FC656509) CAXW14826.fwd CAXW Lottia gigantea from female go... 92 3e-20 2
(FC685341) CAXX18173.fwd CAXX Lottia gigantea from male gona... 92 3e-20 2
(FC756885) CBBI9680.fwd CBBI Lottia gigantea 26h,37h,61h Lar... 92 3e-20 2
(FC578535) CAXP13470.fwd CAXP Lottia gigantea from head, foo... 92 4e-20 2
(FC710262) CAXY6247.fwd CAXY Lottia gigantea from male gonad... 92 4e-20 2
(FC703885) CAXY2253.fwd CAXY Lottia gigantea from male gonad... 92 4e-20 2
(BQ125582) rc70c06.y1 Meloidogyne hapla egg SL1 TOPO v1 Melo... 72 5e-18 3
(CA996596) rg43c05.y1 Meloidogyne hapla J2 SL1 TOPO v1 Meloi... 80 2e-16 2
(CK427314) rl74d06.y1 Meloidogyne javanica J2 SL1 pGEM Meloi... 68 4e-15 2
(CK427331) rl74f04.y1 Meloidogyne javanica J2 SL1 pGEM Meloi... 68 5e-15 2
(EH013787) USDA-FP_186553 Lysiphlebus testaceipes adult whol... 54 2e-14 3
(EH013364) USDA-FP_186172 Lysiphlebus testaceipes adult whol... 54 3e-14 3
(EH009718) USDA-FP_181889 Lysiphlebus testaceipes adult whol... 54 3e-14 3
(CD406340) Gm_ck31149 Soybean induced by Salicylic Acid Glyc... 60 6e-14 3
(CN442977) re56e07.y1 Meloidogyne incognita J3 J4 SL1 pGEM M... 60 1e-12 3
(CF802039) rj56c10.y1 Meloidogyne chitwoodi female SL1 pGEM ... 52 1e-12 3
(CF802060) rj56e11.y1 Meloidogyne chitwoodi female SL1 pGEM ... 52 5e-12 3
(GE700634) CBUI6155.g1 B.anynana_wing.0-3d_nosize Bicyclus a... 58 9e-12 2
(GE700633) CBUI1225.g1 B.anynana_wing.0-3d_nosize Bicyclus a... 58 9e-12 2
(DY767772) 48H_new17_B03 Bicyclus anynana wings - 48H pupae ... 58 9e-12 2
(DY770769) 72H_old01_J14 Bicyclus anynana wings - 72H pupae ... 58 9e-12 2
(GE735992) CBUG2667.b1 B.anynana_wing.LCPP_nosize Bicyclus a... 58 9e-12 2
(GE735995) CBUG2667.g1 B.anynana_wing.LCPP_nosize Bicyclus a... 58 9e-12 2
(GE655194) CBUF5211.b1 B.anynana_abdomen_2-10kb Bicyclus any... 58 9e-12 2
(GE664542) CBUC8945.b1 B.anynana_abdomen_nosize Bicyclus any... 58 9e-12 2
(DY765448) 24H_new11_L16 Bicyclus anynana wings - 24H pupae ... 58 9e-12 2
(GE700631) CBUI4046.g1 B.anynana_wing.0-3d_nosize Bicyclus a... 58 9e-12 2
(GE700629) CBUI4046.b1 B.anynana_wing.0-3d_nosize Bicyclus a... 58 9e-12 2
(GE655195) CBUF5211.g1 B.anynana_abdomen_2-10kb Bicyclus any... 58 9e-12 2
(GE735993) CBUG4387.b1 B.anynana_wing.LCPP_nosize Bicyclus a... 58 9e-12 2
(GE735994) CBUG4150.g1 B.anynana_wing.LCPP_nosize Bicyclus a... 58 9e-12 2
(GE735991) CBUG4150.b1 B.anynana_wing.LCPP_nosize Bicyclus a... 58 9e-12 2
(DY772175) 5TH_new04_G18 Bicyclus anynana wings - 5TH instar... 58 9e-12 2
(AM877841) Mytilus edulis EST, 3' end sequence, clone mytilu... 44 6e-11 4
(CN442858) re70c02.y1 Meloidogyne incognita J3 J4 SL1 pGEM M... 52 1e-10 3
(CK985193) re43a04.y2 Meloidogyne incognita J3 J4 SL1 pGEM M... 60 2e-10 2
(FF505781) G709P5201RA10.T0 Acorn worm normalized neurula pE... 68 3e-10 2
(EW780789) SmSal566 Orange wheat blossom midge salivary glan... 46 4e-10 3
(CN443565) re61g10.y1 Meloidogyne incognita J3 J4 SL1 pGEM M... 60 5e-10 2
(CE146003) tigr-gss-dog-17000371287154 Dog Library Canis lup... 60 6e-10 2
(CO660766) DG31-173h15 DG31-jejunum Canis lupus familiaris c... 60 7e-10 2
(CK999481) io86d09.b1 Brain - Cerebellum Library (DOGEST8) C... 60 7e-10 2
(DN388501) LIB3893-025-Q6-K1-E5 LIB3893 Canis lupus familiar... 60 7e-10 2
(CO605362) DG8-38j17 DG8-testis Canis lupus familiaris cDNA ... 60 7e-10 2
(DT542879) DR010030A20D06 Canine normalized retinal cDNA lib... 60 8e-10 2
(CO630960) DG9-57a10 DG9-ovary Canis lupus familiaris cDNA 3... 60 8e-10 2
(CO618915) DG9-190n24 DG9-ovary Canis lupus familiaris cDNA ... 60 8e-10 2
(DN385503) LIB3892-015-Q6-K1-G6 LIB3892 Canis lupus familiar... 60 8e-10 2
(CO664705) DG40-156o8 DG40-uterus Canis lupus familiaris cDN... 60 8e-10 2
(CO612437) DG9-114e12 DG9-ovary Canis lupus familiaris cDNA ... 60 8e-10 2
(CN000993) io86d09.g1 Brain - Cerebellum Library (DOGEST8) C... 60 8e-10 2
(CO614455) DG9-136h15 DG9-ovary Canis lupus familiaris cDNA ... 60 8e-10 2
(CF802020) rj56a11.y1 Meloidogyne chitwoodi female SL1 pGEM ... 52 8e-10 3
(CO664334) DG40-121f20 DG40-uterus Canis lupus familiaris cD... 60 8e-10 2
(CO586353) DG2-12g4 DG2-brain Canis lupus familiaris cDNA 3'... 60 9e-10 2
(CO664585) DG40-144i13 DG40-uterus Canis lupus familiaris cD... 60 9e-10 2
(CO683520) DG11-170b22 DG11-kidney Canis lupus familiaris cD... 60 9e-10 2
(CO694062) DG11-70c20 DG11-kidney Canis lupus familiaris cDN... 60 9e-10 2
(CO687944) DG11-238m23 DG11-kidney Canis lupus familiaris cD... 60 9e-10 2
(CO619408) DG9-196l8 DG9-ovary Canis lupus familiaris cDNA 3... 60 9e-10 2
(DN863275) nac02a12.y1 Dog eye lens. Unnormalized (nac) Cani... 60 9e-10 2
(CO610369) DG8-93d18 DG8-testis Canis lupus familiaris cDNA ... 60 9e-10 2
(CE635907) tigr-gss-dog-17000366749842 Dog Library Canis lup... 60 9e-10 2
(DN367152) LIB3629-026-Q6-K6-G5 LIB3629 Canis lupus familiar... 60 9e-10 2
(CO664509) DG40-137o18 DG40-uterus Canis lupus familiaris cD... 60 9e-10 2
(DN863274) nac02a12.x1 Dog eye lens. Unnormalized (nac) Cani... 60 9e-10 2
(CO700428) DG32-177h11 DG32-liver Canis lupus familiaris cDN... 60 9e-10 2
(CO664586) DG40-144j10 DG40-uterus Canis lupus familiaris cD... 60 9e-10 2
(CO664833) DG40-170d19 DG40-uterus Canis lupus familiaris cD... 60 9e-10 2
(CO625479) DG9-263p6 DG9-ovary Canis lupus familiaris cDNA 3... 60 9e-10 2
(CO611848) DG9-108n21 DG9-ovary Canis lupus familiaris cDNA ... 60 9e-10 2
(CO698346) DG32-134l20 DG32-liver Canis lupus familiaris cDN... 60 9e-10 2
(CO619947) DG9-201b8 DG9-ovary Canis lupus familiaris cDNA 3... 60 1e-09 2
(CO614535) DG9-137g22 DG9-ovary Canis lupus familiaris cDNA ... 60 1e-09 2
(FD933764) SmSal881 Orange wheat blossom midge salivary glan... 46 2e-09 3
(CF802031) rj56b11.y1 Meloidogyne chitwoodi female SL1 pGEM ... 52 2e-09 2
(CF802051) rj56d12.y1 Meloidogyne chitwoodi female SL1 pGEM ... 52 3e-09 3
(CF802030) rj56b10.y1 Meloidogyne chitwoodi female SL1 pGEM ... 52 3e-09 3
(CF802019) rj56a10.y1 Meloidogyne chitwoodi female SL1 pGEM ... 52 3e-09 3
(CO655994) DG21-1f4 DG21-duodenum Canis lupus familiaris cDN... 58 3e-09 2
(CO589542) DG2-29g6 DG2-brain Canis lupus familiaris cDNA 3'... 58 3e-09 2
(BG492901) 602536939F1 NIH_MGC_59 Homo sapiens cDNA clone IM... 60 8e-09 2
(FG540512) OtL018A04_011807e Onthophagus taurus larval libra... 54 1e-08 3
(CA127096) SCCCLR2002D01.g LR2 Saccharum officinarum cDNA cl... 42 1e-08 3
(BQ519443) rd34b04.y1 Meloidogyne incognita egg SL1 TOPO v1 ... 60 3e-08 2
(BT078122) Lepeophtheirus salmonis clone lsal-evj-509-022 U6... 44 2e-07 3
(EX481117) EST_lsal_evj_791542 lsalevj mixed_tissue_mixed_st... 44 2e-07 3
(EX481116) EST_lsal_evj_791158 lsalevj mixed_tissue_mixed_st... 44 2e-07 3
(BT077943) Lepeophtheirus salmonis clone lsal-evj-551-136 U6... 44 2e-07 3
(FK930478) EST_lsal_evj_959464 lsalevj mixed_tissue_mixed_st... 44 2e-07 3
(FK930477) EST_lsal_evj_934120 lsalevj mixed_tissue_mixed_st... 44 2e-07 3
(GE700630) CBUI8942.b1 B.anynana_wing.0-3d_nosize Bicyclus a... 44 4e-07 2
(GE700632) CBUI8942.g1 B.anynana_wing.0-3d_nosize Bicyclus a... 44 4e-07 2
(ES610020) M19h03 American mink brain Neovison vison cDNA cl... 50 9e-07 2
(EW764450) ST040009B10H05 Normalized and subtracted western ... 48 2e-06 2
(CK938420) CGF1004442_H09 Developing fruit albedo at 165 DAF... 52 2e-06 2
(EB244753) PEG003-C-227153-501 Normalized Pedal-Pleural Gang... 36 2e-06 3
(EB247251) PEG003-C-030389-501 Normalized Pedal-Pleural Gang... 36 2e-06 3
(EB346888) CNSN01-F-070278-501 Normalized CNS library (juven... 36 2e-06 3
(EB265525) MCCN20-F-132634-501 Normalized MCC Neurons Aplysi... 36 2e-06 3
(EB233633) PEG003-C-205930-501 Normalized Pedal-Pleural Gang... 36 2e-06 3
(EB284081) CNSN01-F-004033-501 Normalized CNS library (juven... 36 2e-06 3
(EB313579) CNSN01-F-077883-501 Normalized CNS library (juven... 36 2e-06 3
(EB224013) PEG002-C-105410-501 Normalized Pedal-Pleural Gang... 36 2e-06 3
(EB264627) MCCN20-F-130925-501 Normalized MCC Neurons Aplysi... 36 2e-06 3
(EB331215) CNSN01-F-136459-501 Normalized CNS library (juven... 36 2e-06 3
(EB301359) CNSN01-F-059243-501 Normalized CNS library (juven... 36 2e-06 3
(BI510279) BB170028B10A05.5 Bee Brain Normalized/Subtracted ... 48 3e-06 2
(CF649866) 3530_1_77_1_D12.x_1 3530 - Full length cDNA libra... 42 3e-06 3
(FL205913) 1408971 CERES-196 Zea mays cDNA clone 296724 5', ... 42 3e-06 3
(FL205838) 2949537 CERES-227 Zea mays cDNA clone 494343 5', ... 42 4e-06 3
(FL205845) 4066088 CERES-298 Zea mays cDNA clone 894952 5', ... 42 5e-06 3
(CF048567) QCL24e06.yg QCL Zea mays cDNA clone QCL24e06, mRN... 42 5e-06 3
(FL205841) 1504684 CERES-196 Zea mays cDNA clone 318045 5', ... 42 5e-06 3
(FL205887) 1492891 CERES-197 Zea mays cDNA clone 313768 5', ... 42 5e-06 3
(FL205882) 1743261 CERES-227 Zea mays cDNA clone 395540 5', ... 42 5e-06 3
(FL205831) 1093458 CERES-197 Zea mays cDNA clone 240061 5', ... 42 5e-06 3
(FL205904) 1618851 CERES-222 Zea mays cDNA clone 354351 5', ... 42 5e-06 3
(FL205902) 1493487 CERES-196 Zea mays cDNA clone 314364 5', ... 42 5e-06 3
(EA173819) Sequence 38134 from patent US 7214786. 42 5e-06 3
(FL205918) 1042989 CERES-196 Zea mays cDNA clone 217834 5', ... 42 5e-06 3
(FL205818) 1092812 CERES-197 Zea mays cDNA clone 239415 5', ... 42 5e-06 3
(FL205911) 1036885 CERES-176 Zea mays cDNA clone 211730 5', ... 42 5e-06 3
(FL205816) 1637822 CERES-214 Zea mays cDNA clone 372419 5', ... 42 5e-06 3
(FL205870) 2946674 CERES-227 Zea mays cDNA clone 491480 5', ... 42 5e-06 3
(FL205931) 1744846 CERES-222 Zea mays cDNA clone 397125 5', ... 42 5e-06 3
(FL205849) 1615065 CERES-222 Zea mays cDNA clone 350565 5', ... 42 6e-06 3
(FL205945) 1417125 CERES-196 Zea mays cDNA clone 303231 5', ... 42 6e-06 3
(FL205853) 1417497 CERES-196 Zea mays cDNA clone 303603 5', ... 42 6e-06 3
(FL112593) 25561600 CERES-606 Zea mays cDNA clone 1701568 5'... 42 6e-06 3
(FL205926) 2961582 CERES-227 Zea mays cDNA clone 503407 5', ... 42 6e-06 3
(FL205943) 1036246 CERES-176 Zea mays cDNA clone 211091 5', ... 42 6e-06 3
(FL205915) 1090997 CERES-197 Zea mays cDNA clone 237600 5', ... 42 6e-06 3
(FL205857) 1525193 CERES-197 Zea mays cDNA clone 332369 5', ... 42 6e-06 3
(FL205959) 2024448 CERES-226 Zea mays cDNA clone 423819 5', ... 42 6e-06 3
(FL205924) 1603570 CERES-213 Zea mays cDNA clone 342916 5', ... 42 6e-06 3
(FL205944) 4201375 CERES-298 Zea mays cDNA clone 986036 5', ... 42 6e-06 3
(FL205820) 4203882 CERES-298 Zea mays cDNA clone 988517 5', ... 42 6e-06 3
(FL205961) 4201452 CERES-298 Zea mays cDNA clone 986113 5', ... 42 6e-06 3
(FL205803) 1035775 CERES-176 Zea mays cDNA clone 210620 5', ... 42 6e-06 3
(FL205798) 1497400 CERES-196 Zea mays cDNA clone 317326 5', ... 42 6e-06 3
(CK368167) zmrws055_0A11-005-c03.s0 zmrws055 Zea mays cDNA 5... 42 6e-06 3
(FL205791) 1040547 CERES-176 Zea mays cDNA clone 215392 5', ... 42 6e-06 3
(FL205890) 977325 CERES-176 Zea mays cDNA clone 208082 5', m... 42 6e-06 3
(FL205874) 2745090 CERES-226 Zea mays cDNA clone 452202 5', ... 42 6e-06 3
(FL205829) 1701862 CERES-222 Zea mays cDNA clone 377389 5', ... 42 6e-06 3
(FL205808) 1059804 CERES-197 Zea mays cDNA clone 229405 5', ... 42 6e-06 3
(FL205948) 1745302 CERES-227 Zea mays cDNA clone 397581 5', ... 42 6e-06 3
(FL205934) 1560095 CERES-196 Zea mays cDNA clone 341687 5', ... 42 6e-06 3
(FL205832) 1092895 CERES-197 Zea mays cDNA clone 239498 5', ... 42 6e-06 3
(FL205846) 1495069 CERES-196 Zea mays cDNA clone 315946 5', ... 42 6e-06 3
(FL205927) 2767727 CERES-227 Zea mays cDNA clone 466234 5', ... 42 6e-06 3
(FL205895) 1618874 CERES-222 Zea mays cDNA clone 354374 5', ... 42 6e-06 3
(FL112594) 1558606 CERES-196 Zea mays cDNA clone 340198 5', ... 42 6e-06 3
(FL205821) 1055448 CERES-196 Zea mays cDNA clone 225049 5', ... 42 6e-06 3
(FL205881) 1737012 CERES-226 Zea mays cDNA clone 389291 5', ... 42 6e-06 3
(FL205879) 1528101 CERES-197 Zea mays cDNA clone 335277 5', ... 42 6e-06 3
(EC858156) zea278A06 Normalized cDNA library from mix tissue... 42 6e-06 3
(FL205807) 1041123 CERES-176 Zea mays cDNA clone 215968 5', ... 42 6e-06 3
(FL205941) 1371613 CERES-197 Zea mays cDNA clone 289336 5', ... 42 6e-06 3
(FL205888) 1369170 CERES-196 Zea mays cDNA clone 286893 5', ... 42 6e-06 3
(FL205957) 1632151 CERES-213 Zea mays cDNA clone 366748 5', ... 42 6e-06 3
(FL205922) 1136722 CERES-197 Zea mays cDNA clone 258097 5', ... 42 6e-06 3
(FL205860) 1615247 CERES-222 Zea mays cDNA clone 350747 5', ... 42 6e-06 3
(FL205797) 1402219 CERES-196 Zea mays cDNA clone 295167 5', ... 42 6e-06 3
(BM378619) MEST567-F07.univ ISUM7 Zea mays cDNA clone MEST56... 42 7e-06 3
(FL205942) 1531035 CERES-197 Zea mays cDNA clone 338211 5', ... 42 7e-06 3
(FL205851) 2228352 CERES-226 Zea mays cDNA clone 443079 5', ... 42 7e-06 3
(FL205813) 1618636 CERES-222 Zea mays cDNA clone 354136 5', ... 42 7e-06 3
(FL205940) 2948056 CERES-227 Zea mays cDNA clone 492862 5', ... 42 7e-06 3
(FL205865) 1137684 CERES-197 Zea mays cDNA clone 259059 5', ... 42 7e-06 3
(FL205955) 1152986 CERES-196 Zea mays cDNA clone 273551 5', ... 42 7e-06 3
(FL205788) 978931 CERES-176 Zea mays cDNA clone 209694 5', m... 42 7e-06 3
(BM379589) MEST507-F02.univ ISUM6 Zea mays cDNA clone MEST50... 42 7e-06 3
(FL205862) 4199763 CERES-298 Zea mays cDNA clone 984457 5', ... 42 7e-06 3
(FL205892) 24923062 CERES-606 Zea mays cDNA clone 1634728 5'... 42 7e-06 3
(FL205884) 1046226 CERES-197 Zea mays cDNA clone 221071 5', ... 42 7e-06 3
(FL205799) 4201420 CERES-298 Zea mays cDNA clone 986081 5', ... 42 7e-06 3
(FL205792) 1041284 CERES-191 Zea mays cDNA clone 216129 5', ... 42 7e-06 3
(FL205815) 1041302 CERES-191 Zea mays cDNA clone 216147 5', ... 42 7e-06 3
(FL205919) 1627657 CERES-222 Zea mays cDNA clone 362254 5', ... 42 7e-06 3
(FL205842) 1604341 CERES-213 Zea mays cDNA clone 343687 5', ... 42 7e-06 3
(CI711314) Oryza sativa Japonica Group cDNA, clone: J07B5198... 44 7e-06 2
(FL205866) 1414259 CERES-196 Zea mays cDNA clone 300365 5', ... 42 7e-06 3
(FL205864) 1530237 CERES-197 Zea mays cDNA clone 337413 5', ... 42 7e-06 3
(FL205916) 1373162 CERES-196 Zea mays cDNA clone 290885 5', ... 42 7e-06 3
(FL205847) 1697146 CERES-222 Zea mays cDNA clone 374609 5', ... 42 7e-06 3
(FL205810) 1730844 CERES-226 Zea mays cDNA clone 383123 5', ... 42 7e-06 3
(FL430808) 1855722 CERES-214 Zea mays cDNA clone 324869 3', ... 42 7e-06 3
(FL205903) 1044401 CERES-196 Zea mays cDNA clone 219246 5', ... 42 7e-06 3
(FL205898) 1738864 CERES-227 Zea mays cDNA clone 391143 5', ... 42 7e-06 3
(FL205827) 1046498 CERES-196 Zea mays cDNA clone 221343 5', ... 42 7e-06 3
(AI942081) 618040C09.x1 618 - Inbred Tassel cDNA Library Zea... 42 7e-06 3
(CA831055) 1117015A02.y1 1117 - Unigene V from Maize Genome ... 42 7e-06 3
(FL205854) 1058600 CERES-197 Zea mays cDNA clone 228201 5', ... 42 7e-06 3
(FL205830) 1038904 CERES-191 Zea mays cDNA clone 213749 5', ... 42 7e-06 3
(FL205794) 1726382 CERES-225 Zea mays cDNA clone 378661 5', ... 42 7e-06 3
(FL205928) 1044349 CERES-197 Zea mays cDNA clone 219194 5', ... 42 7e-06 3
(FL205956) 1520662 CERES-196 Zea mays cDNA clone 328363 5', ... 42 7e-06 3
(FL205900) 1696785 CERES-222 Zea mays cDNA clone 374248 5', ... 42 7e-06 3
(FL205861) 1100199 CERES-197 Zea mays cDNA clone 246802 5', ... 42 7e-06 3
(FL205954) 1155358 CERES-196 Zea mays cDNA clone 275923 5', ... 42 7e-06 3
(FL205949) 1038294 CERES-191 Zea mays cDNA clone 213139 5', ... 42 7e-06 3
(FL205848) 1043080 CERES-196 Zea mays cDNA clone 217925 5', ... 42 7e-06 3
(FL205795) 1083645 CERES-196 Zea mays cDNA clone 234005 5', ... 42 7e-06 3
(FL205787) 978696 CERES-177 Zea mays cDNA clone 209457 5', m... 42 7e-06 3
(FL205908) 1373140 CERES-196 Zea mays cDNA clone 290863 5', ... 42 7e-06 3
(FL205817) 1040945 CERES-191 Zea mays cDNA clone 215790 5', ... 42 7e-06 3
(FL205953) 1402321 CERES-197 Zea mays cDNA clone 295269 5', ... 42 7e-06 3
(FL205936) 1615028 CERES-222 Zea mays cDNA clone 350528 5', ... 42 7e-06 3
(FL205925) 2945982 CERES-227 Zea mays cDNA clone 491276 5', ... 42 7e-06 3
(FL205843) 1634166 CERES-214 Zea mays cDNA clone 368763 5', ... 42 7e-06 3
(FL205869) 1628575 CERES-222 Zea mays cDNA clone 363172 5', ... 42 7e-06 3
(FL205836) 1044922 CERES-197 Zea mays cDNA clone 219767 5', ... 42 7e-06 3
(FL205850) 1054213 CERES-197 Zea mays cDNA clone 223814 5', ... 42 7e-06 3
(FL205938) 1615229 CERES-222 Zea mays cDNA clone 350729 5', ... 42 7e-06 3
(FL205785) 1417363 CERES-196 Zea mays cDNA clone 303469 5', ... 42 7e-06 3
(FL205935) 1497140 CERES-196 Zea mays cDNA clone 317066 5', ... 42 7e-06 3
(FL205909) 1505305 CERES-197 Zea mays cDNA clone 318666 5', ... 42 7e-06 3
(FL205858) 1618389 CERES-222 Zea mays cDNA clone 353889 5', ... 42 7e-06 3
(FL205790) 1036280 CERES-176 Zea mays cDNA clone 211125 5', ... 42 8e-06 3
(CI658495) Oryza sativa Japonica Group cDNA, clone: J06B5154... 44 8e-06 2
(FL205826) 1369239 CERES-197 Zea mays cDNA clone 286962 5', ... 42 8e-06 3
(FL205952) 1267098 CERES-197 Zea mays cDNA clone 282831 5', ... 42 8e-06 3
(FL205801) 979393 CERES-176 Zea mays cDNA clone 210161 5', m... 42 8e-06 3
(CF772065) DSBF1_28_G02.g9_A010 Drought-stressed before flow... 42 8e-06 3
(FL205901) 1265354 CERES-197 Zea mays cDNA clone 281087 5', ... 42 8e-06 3
(FL205834) 1135354 CERES-199 Zea mays cDNA clone 256729 5', ... 42 8e-06 3
(EE681547) zmrsub1_0A10-019-g08.s1 zmrsub1 Zea mays cDNA 3',... 42 8e-06 3
(FL205852) 1609761 CERES-196 Zea mays cDNA clone 345261 5', ... 42 8e-06 3
(FL205905) 1623869 CERES-222 Zea mays cDNA clone 358466 5', ... 42 8e-06 3
(FL205868) 1037308 CERES-176 Zea mays cDNA clone 212153 5', ... 42 8e-06 3
(FL205947) 1038865 CERES-191 Zea mays cDNA clone 213710 5', ... 42 8e-06 3
(FL205899) 978058 CERES-176 Zea mays cDNA clone 208819 5', m... 42 8e-06 3
(FL205811) 2767303 CERES-226 Zea mays cDNA clone 465810 5', ... 42 8e-06 3
(FL205805) 1559885 CERES-196 Zea mays cDNA clone 341477 5', ... 42 8e-06 3
(CF623211) zmrws05_0A10-005-c03.s1 zmrws05 Zea mays cDNA 3',... 42 8e-06 3
(FL205920) 1616504 CERES-222 Zea mays cDNA clone 352004 5', ... 42 8e-06 3
(AW562528) 660066A02.y1 660 - Mixed stages of anther and pol... 42 8e-06 3
(BU036526) 946127F03.x1 946 - tassel primordium prepared by ... 42 9e-06 3
(FL438146) 31263374 CERES-606 Zea mays cDNA clone 1701568 3'... 42 9e-06 3
(FL205951) 1727575 CERES-225 Zea mays cDNA clone 379854 5', ... 42 9e-06 3
(FL205958) 3497344 CERES-264 Zea mays cDNA clone 687778 5', ... 42 9e-06 3
(EU958545) Zea mays clone 1701568 mRNA sequence. 42 9e-06 3
(FL205814) 3511243 CERES-264 Zea mays cDNA clone 697801 5', ... 42 9e-06 3
(FL205873) 25562722 CERES-502 Zea mays cDNA clone 1702690 5'... 42 9e-06 3
(FL374722) 14203226 CERES-CN31 Zea mays cDNA clone 1448807 5... 42 9e-06 3
(FL205914) 978546 CERES-177 Zea mays cDNA clone 209307 5', m... 42 9e-06 3
(FL205912) 25739823 CERES-606 Zea mays cDNA clone 1708536 5'... 42 9e-06 3
(FL205786) 15183129 CERES-CN31 Zea mays cDNA clone 1482744 5... 42 9e-06 3
(CA484340) WHE4305_D02_G03ZS Wheat meiotic anther cDNA libra... 42 9e-06 3
(FL205896) 1525664 CERES-197 Zea mays cDNA clone 332840 5', ... 42 9e-06 3
(CO633409) DG9-81e6 DG9-ovary Canis lupus familiaris cDNA 3'... 46 9e-06 2
(FL205825) 1625072 CERES-222 Zea mays cDNA clone 359669 5', ... 42 9e-06 3
(CF042098) QCI34a04.yg QCI Zea mays cDNA clone QCI34a04, mRN... 42 9e-06 3
(FL205932) 1530901 CERES-197 Zea mays cDNA clone 338077 5', ... 42 9e-06 3
(CF626413) zmrws05_0B10-014-e07.s1 zmrws05 Zea mays cDNA 3',... 42 9e-06 3
(AW308720) 618081G02.x1 618 - Inbred Tassel cDNA Library Zea... 42 9e-06 3
(DR813555) ZM_BFb0042M15.r ZM_BFb Zea mays cDNA 5', mRNA seq... 42 1e-05 3
(DN224310) MEST1156_C11.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mR... 42 1e-05 3
(EU968904) Zea mays clone 324869 U6 snRNA-associated Sm-like... 42 1e-05 3
(BM381904) MEST541-G07.univ ISUM6 Zea mays cDNA clone MEST54... 42 1e-05 3
(FL205877) 25741988 CERES-606 Zea mays cDNA clone 1710701 5'... 42 1e-05 3
(FL205837) 15275045 CERES-502 Zea mays cDNA clone 1521950 5'... 42 1e-05 3
(FL391207) 24920643 CERES-606 Zea mays cDNA clone 1634129 5'... 42 1e-05 3
(BM078276) MEST117-D08.T3 ISUM4-TN Zea mays cDNA clone MEST1... 42 1e-05 3
(BU098286) 946133F11.y1 946 - tassel primordium prepared by ... 42 1e-05 3
(FL205878) 24908503 CERES-605 Zea mays cDNA clone 1630590 5'... 42 1e-05 3
(BE512609) 946073C06.x1 946 - tassel primordium prepared by ... 42 1e-05 3
(FL205804) 25561119 CERES-606 Zea mays cDNA clone 1701087 5'... 42 1e-05 3
(DN209906) MEST891_D04.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mRN... 42 1e-05 3
(FL205812) 25565465 CERES-606 Zea mays cDNA clone 1705433 5'... 42 1e-05 3
(CF042385) QCI38c11.yg QCI Zea mays cDNA clone QCI38c11, mRN... 42 1e-05 3
(CF040707) QCI17d07.yg QCI Zea mays cDNA clone QCI17d07, mRN... 42 1e-05 3
(FL443140) 1452726 CERES-196 Zea mays cDNA clone 272681 3', ... 42 1e-05 3
(FL205800) 25563043 CERES-606 Zea mays cDNA clone 1703011 5'... 42 1e-05 3
(BU098497) 946135G08.y1 946 - tassel primordium prepared by ... 42 1e-05 3
(CA129184) SCRFLR2037C11.g LR2 Saccharum officinarum cDNA cl... 42 1e-05 3
(EB705770) ZM_BFb0351P03.r ZM_BFb Zea mays cDNA 5', mRNA seq... 42 1e-05 3
(EB705769) ZM_BFb0351P03.f ZM_BFb Zea mays cDNA 3', mRNA seq... 42 1e-05 3
(BT039030) Zea mays full-length cDNA clone ZM_BFb0351P03 mRN... 42 1e-05 3
(CA225165) SCCCAM1C09E11.g AM1 Saccharum officinarum cDNA cl... 42 1e-05 3
(CO439962) MZCCL10013G03.g Maize Endosperm cDNA Library Zea ... 42 1e-05 3
(CA099548) SCUTCL6036E09.g CL6 Saccharum officinarum cDNA cl... 42 1e-05 3
(BU103255) SCUTCL6036E09.g Saccharum officinarum mRNA (Nogue... 42 1e-05 3
(CA120801) SCEPLR1030B06.g LR1 Saccharum officinarum cDNA cl... 42 1e-05 3
(EU963790) Zea mays clone 272681 U6 snRNA-associated Sm-like... 42 1e-05 3
(DY401929) V-946-4D-A02.Gal4-R UGV-Reseq Zea mays cDNA, mRNA... 42 1e-05 3
(AY106026) Zea mays PCO148532 mRNA sequence. 42 1e-05 3
(FL205833) 21530996 CERES-502 Zea mays cDNA clone 1588536 5'... 42 1e-05 3
(BU645176) 946127F03.y2 946 - tassel primordium prepared by ... 42 1e-05 3
(CF482440) POL1_7_A07.b1_A002 Pollen Sorghum bicolor cDNA cl... 42 1e-05 3
(FL205844) 1744575 CERES-227 Zea mays cDNA clone 396854 5', ... 40 2e-05 3
(DN224783) MEST1163_C12.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mR... 42 2e-05 3
(FL027701) 25739999 CERES-606 Zea mays cDNA clone 1708712 5'... 42 2e-05 3
(CN869778) 001203AAOA005521HT (AAOA) Royal Gala phloem Malus... 44 2e-05 2
(FL205863) 1040202 CERES-191 Zea mays cDNA clone 215047 5', ... 42 3e-05 3
(GE870659) 1112870106446 BABEVCEREB-C-01-1-7KB Papio anubis ... 58 3e-05 2
(FK901394) EST_lsal_evj_852974 lsalevj mixed_tissue_mixed_st... 38 4e-05 3
(BT036888) Zea mays full-length cDNA clone ZM_BFb0146C16 mRN... 42 5e-05 3
(FL205921) 979789 CERES-177 Zea mays cDNA clone 210558 5', m... 38 7e-05 3
(FL205806) 1092533 CERES-197 Zea mays cDNA clone 239136 5', ... 42 7e-05 3
(FL205937) 2057924 CERES-226 Zea mays cDNA clone 424943 5', ... 42 7e-05 3
(FL205828) 1152972 CERES-196 Zea mays cDNA clone 273537 5', ... 42 7e-05 3
(FL205793) 2771620 CERES-227 Zea mays cDNA clone 469886 5', ... 42 7e-05 3
(FL205856) 1630208 CERES-222 Zea mays cDNA clone 364805 5', ... 38 8e-05 3
(FL205883) 1057015 CERES-196 Zea mays cDNA clone 226616 5', ... 38 9e-05 3
(FL205889) 1038499 CERES-191 Zea mays cDNA clone 213344 5', ... 42 9e-05 3
(AB463841) Synthetic construct DNA, clone: pF1KB6747, Homo s... 60 9e-05 1
(GC539092) Sequence 3524 from patent US 7413875. 60 9e-05 1
(DL465299) COMPOSITIONS, KITS, AND METHODS FOR IDENTIFICATIO... 60 9e-05 1
(DJ434429) Gene relating to immortalization of human cancer ... 60 9e-05 1
(DJ032918) BIOMARKERS OF CYCLIN-DEPENDENT KINASE MODULATION. 60 9e-05 1
(DD196750) HUMAN GENES AND GENE EXPRESSION PRODUCTS ISOLATED... 60 9e-05 1
(CQ921099) Sequence 2299 from Patent WO2004097052. 60 9e-05 1
(CQ722587) Sequence 8521 from Patent WO02068579. 60 9e-05 1
(CQ713388) Sequence 58314 from Patent WO02070737. 60 9e-05 1
(CQ711359) Sequence 56285 from Patent WO02070737. 60 9e-05 1
(CQ709244) Sequence 54170 from Patent WO02070737. 60 9e-05 1
(CQ708046) Sequence 52972 from Patent WO02070737. 60 9e-05 1
(CQ705201) Sequence 50127 from Patent WO02070737. 60 9e-05 1
(CQ702413) Sequence 47339 from Patent WO02070737. 60 9e-05 1
(CQ691988) Sequence 36914 from Patent WO02070737. 60 9e-05 1
(CQ689002) Sequence 33928 from Patent WO02070737. 60 9e-05 1
(CQ685203) Sequence 30129 from Patent WO02070737. 60 9e-05 1
(CQ671772) Sequence 16698 from Patent WO02070737. 60 9e-05 1
(CQ668931) Sequence 13857 from Patent WO02070737. 60 9e-05 1
(BD111440) EST and encoded human protein. 60 9e-05 1
(BD027669) Sequence tag and encoded human protein. 60 9e-05 1
(AX972721) Sequence 3524 from Patent EP1104808. 60 9e-05 1
(AX888059) Sequence 3922 from Patent EP1033401. 60 9e-05 1
(AX408284) Sequence 931 from Patent WO0229103. 60 9e-05 1
(GN434299) Sequence 58314 from Patent WO2002070737. 60 9e-05 1
(GN432270) Sequence 56285 from Patent WO2002070737. 60 9e-05 1
(GN430155) Sequence 54170 from Patent WO2002070737. 60 9e-05 1
(GN428957) Sequence 52972 from Patent WO2002070737. 60 9e-05 1
(GN426112) Sequence 50127 from Patent WO2002070737. 60 9e-05 1
(GN423324) Sequence 47339 from Patent WO2002070737. 60 9e-05 1
(GN412899) Sequence 36914 from Patent WO2002070737. 60 9e-05 1
(GN409913) Sequence 33928 from Patent WO2002070737. 60 9e-05 1
(GN406114) Sequence 30129 from Patent WO2002070737. 60 9e-05 1
(GN392683) Sequence 16698 from Patent WO2002070737. 60 9e-05 1
(GN389842) Sequence 13857 from Patent WO2002070737. 60 9e-05 1
(GC654864) Sequence 58314 from patent US 7432049. 60 9e-05 1
(GC652835) Sequence 56285 from patent US 7432049. 60 9e-05 1
(GC650720) Sequence 54170 from patent US 7432049. 60 9e-05 1
(GC649522) Sequence 52972 from patent US 7432049. 60 9e-05 1
(GC646677) Sequence 50127 from patent US 7432049. 60 9e-05 1
(GC643889) Sequence 47339 from patent US 7432049. 60 9e-05 1
(GC633464) Sequence 36914 from patent US 7432049. 60 9e-05 1
(GC630478) Sequence 33928 from patent US 7432049. 60 9e-05 1
(GC626679) Sequence 30129 from patent US 7432049. 60 9e-05 1
(GC613248) Sequence 16698 from patent US 7432049. 60 9e-05 1
(GC610407) Sequence 13857 from patent US 7432049. 60 9e-05 1
(AR953530) Sequence 3922 from patent US 7115416. 60 9e-05 1
(AR780368) Sequence 931 from patent US 6974667. 60 9e-05 1
(AR727930) Sequence 3922 from patent US 6783961. 60 9e-05 1
(AR415887) Sequence 3524 from patent US 6639063. 60 9e-05 1
(CR457185) Homo sapiens full open reading frame cDNA clone R... 60 9e-05 1
(BC007055) Homo sapiens LSM3 homolog, U6 small nuclear RNA a... 60 9e-05 1
(AJ238095) Homo sapiens mRNA for Lsm3 protein. 60 9e-05 1
(AF182418) Homo sapiens MDS017 (MDS017) mRNA, complete cds. 60 9e-05 1
(AF182289) Homo sapiens U6 snRNA-associated Sm-like protein ... 60 9e-05 1
(AC093860) Homo sapiens BAC clone RP11-538D9 from 4, complet... 60 9e-05 1
(AC023350) Homo sapiens chromosome 4 clone RP11-617H10, WORK... 60 9e-05 1
(AK312189) Homo sapiens cDNA, FLJ92476, highly similar to Ho... 60 9e-05 1
(AY413086) Pan troglodytes LSM3 gene, VIRTUAL TRANSCRIPT, pa... 60 9e-05 1
(AY413085) Homo sapiens LSM3 gene, VIRTUAL TRANSCRIPT, parti... 60 9e-05 1
(AV761741) Homo sapiens cDNA clone:MDSBAB10, 5'end, expresse... 60 9e-05 1
(AV758861) Homo sapiens cDNA clone:BMFAHB04, 5'end, expresse... 60 9e-05 1
(AV746464) Homo sapiens cDNA clone:NPBAAB03, 5'end, expresse... 60 9e-05 1
(AV730424) Homo sapiens cDNA clone:HTFAXA06, 5'end, expresse... 60 9e-05 1
(AV682569) Homo sapiens cDNA clone:GKBABG07, 5'end, expresse... 60 9e-05 1
(AV681808) Homo sapiens cDNA clone:GKBABF07, 5'end, expresse... 60 9e-05 1
(DW442248) HHAGE039978 Human liver regeneration after partia... 60 9e-05 1
(DW441705) HHAGE039435 Human liver regeneration after partia... 60 9e-05 1
(DN991046) TC114972 Human adult whole brain, large insert, p... 60 9e-05 1
(DN915572) MCF7RNAL20F16TR Human MCF7 breast cancer cell lin... 60 9e-05 1
(DN914717) MCF7RNAL19B08TF Human MCF7 breast cancer cell lin... 60 9e-05 1
(DB570836) Homo sapiens hypothalamus cDNA, RIKEN full-length... 60 9e-05 1
(DB522521) Homo sapiens testis cDNA, RIKEN full-length enric... 60 9e-05 1
(DB509560) Homo sapiens testis cDNA, RIKEN full-length enric... 60 9e-05 1
(DB499707) Homo sapiens hypothalamus cDNA, RIKEN full-length... 60 9e-05 1
(DB457082) Homo sapiens testis cDNA, RIKEN full-length enric... 60 9e-05 1
(DB444641) Homo sapiens testis cDNA, RIKEN full-length enric... 60 9e-05 1
(DB289601) Homo sapiens cDNA clone UTERU3019319, 5' end, mRN... 60 9e-05 1
(DA910901) Homo sapiens cDNA clone SKNSH2004035, 5' end, mRN... 60 9e-05 1
(DA909133) Homo sapiens cDNA clone SKNSH2001582, 5' end, mRN... 60 9e-05 1
(DA741355) Homo sapiens cDNA clone NT2RP7004116, 5' end, mRN... 60 9e-05 1
(DA740118) Homo sapiens cDNA clone NT2RP7002190, 5' end, mRN... 60 9e-05 1
(CV027417) 5664 Full Length cDNA from the Mammalian Gene Col... 60 9e-05 1
(CR996477) RZPD Homo sapiens cDNA expression clone RZPDp9017... 60 9e-05 1
(CR986408) RZPD Homo sapiens cDNA expression clone RZPDp9016... 60 9e-05 1
(CR741633) RZPD Homo sapiens cDNA clone IMAGp998J2196 = IMAG... 60 9e-05 1
(CN485080) hx22h01.y1 Human primary human ocular pericytes. ... 60 9e-05 1
(CN481032) hw01h11.y1 Human primary human ocular pericytes. ... 60 9e-05 1
(CN313974) 17000599944616 GRN_PRENEU Homo sapiens cDNA 5', m... 60 9e-05 1
(CN305521) 17000600027162 GRN_PREHEP Homo sapiens cDNA 5', m... 60 9e-05 1
(CN305520) 17000600067159 GRN_PREHEP Homo sapiens cDNA 5', m... 60 9e-05 1
(CN305519) 17000600026819 GRN_PREHEP Homo sapiens cDNA 5', m... 60 9e-05 1
(CN305518) 17000599888199 GRN_PRENEU Homo sapiens cDNA 5', m... 60 9e-05 1
(CN305517) 17000599946584 GRN_PRENEU Homo sapiens cDNA 5', m... 60 9e-05 1
(CK905723) ij77f08.x6 Human insulinoma Homo sapiens cDNA clo... 60 9e-05 1
(AJ714244) Homo sapiens EST, clone LKPD02765. 60 9e-05 1
(CF595531) AGENCOURT_15657542 NCI_CGAP_St3 Homo sapiens cDNA... 60 9e-05 1
(CF130643) UI-HF-ES0-awe-d-13-0-UI.r1 NIH_MGC_213 Homo sapie... 60 9e-05 1
(CF129975) UI-HF-ES0-avz-d-10-0-UI.r1 NIH_MGC_213 Homo sapie... 60 9e-05 1
(CD685397) EST1917 human nasopharynx Homo sapiens cDNA, mRNA... 60 9e-05 1
(CD678797) hp13f05.y1 Human Trabecular meshwork cDNA: hohphq... 60 9e-05 1
(CD677700) ho20h10.y2 Human Trabecular meshwork cDNA: hohphq... 60 9e-05 1
(CD675354) fs22d12.y2 Human Lens cDNA (Normalized): fs Homo ... 60 9e-05 1
(CD640754) AGENCOURT_14542104 NIH_MGC_191 Homo sapiens cDNA ... 60 9e-05 1
(CD521335) AGENCOURT_14353691 NIH_MGC_191 Homo sapiens cDNA ... 60 9e-05 1
(CD174944) AGENCOURT_13966482 NIH_MGC_172 Homo sapiens cDNA ... 60 9e-05 1
(CD108858) AGENCOURT_13978930 NIH_MGC_179 Homo sapiens cDNA ... 60 9e-05 1
(CD103282) AGENCOURT_13980601 NIH_MGC_186 Homo sapiens cDNA ... 60 9e-05 1
(CB997407) AGENCOURT_13622343 NIH_MGC_148 Homo sapiens cDNA ... 60 9e-05 1
(CB986689) AGENCOURT_13567795 NIH_MGC_184 Homo sapiens cDNA ... 60 9e-05 1
(CB959726) AGENCOURT_13889603 NIH_MGC_147 Homo sapiens cDNA ... 60 9e-05 1
(CB955885) AGENCOURT_13777532 NIH_MGC_184 Homo sapiens cDNA ... 60 9e-05 1
(CB857228) NISC_na05h02.y1 COGENE 8.5 EAT Homo sapiens cDNA ... 60 9e-05 1
(CB296474) 12B22030_rev_1_A05_r_037.ab1 Chimpanzee brain lib... 60 9e-05 1
(CB218862) NISC_nb11b04.y1 COGENE 6E MAN Homo sapiens cDNA c... 60 9e-05 1
(CB136876) K-EST0189482 L5HLK1 Homo sapiens cDNA clone L5HLK... 60 9e-05 1
(CB131958) K-EST0182125 L14ChoiCK0 Homo sapiens cDNA clone L... 60 9e-05 1
(CB127565) K-EST0176871 C1SNU17 Homo sapiens cDNA clone C1SN... 60 9e-05 1
(CB116713) K-EST0161570 L6ChoCK0 Homo sapiens cDNA clone L6C... 60 9e-05 1
(CB109603) K-EST0150889 L4SNU368 Homo sapiens cDNA clone L4S... 60 9e-05 1
(CB109071) K-EST0150228 L6ChoCK0 Homo sapiens cDNA clone L6C... 60 9e-05 1
(CB107484) K-EST0146791 L3SNU475 Homo sapiens cDNA clone L3S... 60 9e-05 1
(CA942843) ir64d02.y1 HR85 islet Homo sapiens cDNA clone IMA... 60 9e-05 1
(CA942600) ir64d02.x1 HR85 islet Homo sapiens cDNA clone IMA... 60 9e-05 1
(CA443726) UI-H-DT1-awj-b-20-0-UI.s1 NCI_CGAP_DT1 Homo sapie... 60 9e-05 1
(CA423616) UI-H-FE1-bec-p-18-0-UI.s1 NCI_CGAP_FE1 Homo sapie... 60 9e-05 1
(CA337452) NISC_lw01f09.y1 COGENE 4PA1 Homo sapiens cDNA clo... 60 9e-05 1
(AI580786) ta04g05.x1 Soares_pregnant_uterus_NbHPU Homo sapi... 60 9e-05 1
(AI570470) tm76h07.x1 NCI_CGAP_Brn25 Homo sapiens cDNA clone... 60 9e-05 1
(AI523164) ar69e02.x1 Barstead aorta HPLRB6 Homo sapiens cDN... 60 9e-05 1
(BX489632) Homo sapiens mRNA; EST DKFZp686F1861_r1 (from cl... 60 9e-05 1
(BX096371) RZPD Homo sapiens cDNA clone IMAGp998J2389 = IMAG... 60 9e-05 1
(BU941028) AGENCOURT_10539625 NIH_MGC_128 Homo sapiens cDNA ... 60 9e-05 1
(BU940953) AGENCOURT_10538376 NIH_MGC_128 Homo sapiens cDNA ... 60 9e-05 1
(BU940600) AGENCOURT_10580622 NIH_MGC_128 Homo sapiens cDNA ... 60 9e-05 1
(BU940446) AGENCOURT_10580122 NIH_MGC_128 Homo sapiens cDNA ... 60 9e-05 1
(BU935540) AGENCOURT_10516964 NIH_MGC_128 Homo sapiens cDNA ... 60 9e-05 1
(BU932254) AGENCOURT_10479567 NIH_MGC_127 Homo sapiens cDNA ... 60 9e-05 1
(BU928159) AGENCOURT_10436025 NIH_MGC_126 Homo sapiens cDNA ... 60 9e-05 1
(BU734227) UI-E-CQ1-agd-i-11-0-UI.s1 UI-E-CQ1 Homo sapiens c... 60 9e-05 1
(BU599413) AGENCOURT_8908660 NIH_MGC_142 Homo sapiens cDNA c... 60 9e-05 1
(BU597540) AGENCOURT_8904912 NIH_MGC_142 Homo sapiens cDNA c... 60 9e-05 1
(BU595234) AGENCOURT_8899967 NIH_MGC_142 Homo sapiens cDNA c... 60 9e-05 1
(BU588462) AGENCOURT_8910879 NIH_MGC_141 Homo sapiens cDNA c... 60 9e-05 1
(BU588088) AGENCOURT_8829776 NIH_MGC_141 Homo sapiens cDNA c... 60 9e-05 1
(BU070207) im19e10.y1 Human insulinoma Homo sapiens cDNA clo... 60 9e-05 1
(BU069964) im19e10.x1 Human insulinoma Homo sapiens cDNA clo... 60 9e-05 1
(BQ953993) AGENCOURT_8860529 Lupski_sciatic_nerve Homo sapie... 60 9e-05 1
(BQ640327) he27a09.y1 Human Retina cDNA (Un-normalized, unam... 60 9e-05 1
(BQ549782) ik91h09.x1 Human insulinoma Homo sapiens cDNA clo... 60 9e-05 1
(BQ440058) AGENCOURT_7827029 NIH_MGC_67 Homo sapiens cDNA cl... 60 9e-05 1
(BQ276622) AGENCOURT_7025013 NIH_MGC_126 Homo sapiens cDNA c... 60 9e-05 1
(AI351194) qt13h04.x1 NCI_CGAP_GC4 Homo sapiens cDNA clone I... 60 9e-05 1
(AI348058) qp56d01.x1 NCI_CGAP_Co8 Homo sapiens cDNA clone I... 60 9e-05 1
(AI304665) qo64c03.x1 NCI_CGAP_Co8 Homo sapiens cDNA clone I... 60 9e-05 1
(AI272737) ql43b09.x1 NCI_CGAP_Co8 Homo sapiens cDNA clone I... 60 9e-05 1
(AI245966) qk45c12.x1 NCI_CGAP_Co8 Homo sapiens cDNA clone I... 60 9e-05 1
(AI245456) qk29g08.x1 NCI_CGAP_Kid3 Homo sapiens cDNA clone ... 60 9e-05 1
(AI167383) oz92b08.x1 Soares_parathyroid_tumor_NbHPA Homo sa... 60 9e-05 1
(AI161269) qb49h06.x1 NCI_CGAP_Brn23 Homo sapiens cDNA clone... 60 9e-05 1
(AI126789) qb94f07.x1 Soares_fetal_heart_NbHH19W Homo sapien... 60 9e-05 1
(AI125258) qd92a01.x1 Soares_testis_NHT Homo sapiens cDNA cl... 60 9e-05 1
(AI092858) qa77b01.x1 Soares_fetal_heart_NbHH19W Homo sapien... 60 9e-05 1
(AI086749) oz73c07.x1 Soares_senescent_fibroblasts_NbHSF Hom... 60 9e-05 1
(AI083956) oz53b11.x1 Soares_senescent_fibroblasts_NbHSF Hom... 60 9e-05 1
(BP425001) Homo sapiens mRNA, clone: HIE08659r, 3' end, expr... 60 9e-05 1
(BP419326) Homo sapiens mRNA, clone: HIE02543r, 3' end, expr... 60 9e-05 1
(BP418705) Homo sapiens mRNA, clone: HIE01877r, 3' end, expr... 60 9e-05 1
(BP374057) Homo sapiens cDNA clone: UBA08315, Sugano cDNA li... 60 9e-05 1
(BP341063) Homo sapiens cDNA clone: STM01421, Sugano cDNA li... 60 9e-05 1
(BP271785) Homo sapiens cDNA clone: KAT01585, Sugano cDNA li... 60 9e-05 1
(BP197987) Homo sapiens cDNA clone: ADG07475, Sugano cDNA li... 60 9e-05 1
(BM972500) UI-CF-EC1-abq-b-14-0-UI.s1 UI-CF-EC1 Homo sapiens... 60 9e-05 1
(BM874340) laa09d06.y1 8 5 week embryo anterior tongue 8 5 E... 60 9e-05 1
(BM854532) K-EST0136962 S21SNU520 Homo sapiens cDNA clone S2... 60 9e-05 1
(BM850740) K-EST0131377 S21SNU520 Homo sapiens cDNA clone S2... 60 9e-05 1
(BM828185) K-EST0100942 S9SNU601 Homo sapiens cDNA clone S9S... 60 9e-05 1
(BM821392) K-EST0090441 S21SNU520s1 Homo sapiens cDNA clone ... 60 9e-05 1
(BM821156) K-EST0090095 S21SNU520s1 Homo sapiens cDNA clone ... 60 9e-05 1

>(C89979) Dictyostelium discoideum slug cDNA, clone SSG722.
Length = 448

Score = 722 bits (364), Expect = 0.0
Identities = 364/364 (100%)
Strand = Plus / Plus


Query: 1 attttcataatcagtattatttaaataagggttttctaaacagaaattctttatatagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 attttcataatcagtattatttaaataagggttttctaaacagaaattctttatatagat 60


Query: 61 atattttaaaaatatggataaaagagaagaaggaacagttgaagaaccattagatttaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atattttaaaaatatggataaaagagaagaaggaacagttgaagaaccattagatttaat 120


Query: 121 tagattaagtttagatgaaagaatttttgtaaaaatgagacaagatagagaattaagagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tagattaagtttagatgaaagaatttttgtaaaaatgagacaagatagagaattaagagg 180


Query: 181 gaaattacatgcatatgatcaacatttaaatatgattttatcagatgttgaagaaacaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaaattacatgcatatgatcaacatttaaatatgattttatcagatgttgaagaaacaat 240


Query: 241 aaaggttgtagaaaaagatgaggaaactgatgaagaaattataagaaatattaaacgtaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaggttgtagaaaaagatgaggaaactgatgaagaaattataagaaatattaaacgtaa 300


Query: 301 tataaagatgctttttgtccgtggtgatggtgttattttaatttcaccacctttaagaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tataaagatgctttttgtccgtggtgatggtgttattttaatttcaccacctttaagaac 360


Query: 361 ttcg 364
||||
Sbjct: 361 ttcg 364

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 653,979,450
Number of extensions: 45564963
Number of successful extensions: 4429280
Number of sequences better than 10.0: 1548
Length of query: 519
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 496
Effective length of database: 102,190,702,835
Effective search space: 50686588606160
Effective search space used: 50686588606160
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 8. 1
Homology vs Protein
Query= Contig-U05280-1 (Contig-U05280-1Q) /CSM_Contig/Contig-U05280-1Q.Seq.d
(519 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC117075_88(AC117075|pid:none) Dictyostelium discoideum chromoso... 159 4e-38
(Q1ZXK3) RecName: Full=Probable U6 snRNA-associated Sm-like prot... 159 4e-38
AC079283_3(AC079283|pid:none) Arabidopsis thaliana chromosome 1 ... 129 6e-29
GN111378_1(GN111378|pid:none) Sequence 16159 from Patent WO20090... 125 8e-28
BT079966_1(BT079966|pid:none) Esox lucius clone eluc-evq-524-126... 124 1e-27
BC156007_1(BC156007|pid:none) Xenopus tropicalis cDNA clone MGC:... 124 1e-27
AC146567_7(AC146567|pid:none) Medicago truncatula clone mth2-99p... 124 1e-27
BT039030_1(BT039030|pid:none) Zea mays full-length cDNA clone ZM... 123 2e-27
AK060459_1(AK060459|pid:none) Oryza sativa Japonica Group cDNA c... 123 3e-27
AC036104_12(AC036104|pid:none) Sequence of BAC F16F4 from Arabid... 122 5e-27
BT056414_1(BT056414|pid:none) Salmo salar clone ssal-evf-505-189... 122 7e-27
BC133264_1(BC133264|pid:none) Xenopus laevis hypothetical protei... 122 7e-27
AK227392_1(AK227392|pid:none) Arabidopsis thaliana mRNA for hypo... 121 1e-26
BT077943_1(BT077943|pid:none) Lepeophtheirus salmonis Pacific fo... 120 3e-26
DQ443258_1(DQ443258|pid:none) Bombyx mori LSM Sm-like protein fa... 119 6e-26
BT078122_1(BT078122|pid:none) Lepeophtheirus salmonis Pacific fo... 117 1e-25
DQ673394_1(DQ673394|pid:none) Diaphorina citri putative U6 snRNA... 114 1e-24
AL132865_13(AL132865|pid:none) Caenorhabditis elegans YAC Y62E10... 114 1e-24
CP000600_32(CP000600|pid:none) Ostreococcus lucimarinus CCE9901 ... 107 1e-22
FN357573_3(FN357573|pid:none) Schistosoma mansoni genome sequenc... 107 2e-22
CR954214_43(CR954214|pid:none) Ostreococcus tauri strain OTTH059... 107 2e-22
(Q9Y7M4) RecName: Full=Probable U6 snRNA-associated Sm-like prot... 100 4e-20
AM270327_2(AM270327|pid:none) Aspergillus niger contig An14c0200... 99 8e-20
EU958545_1(EU958545|pid:none) Zea mays clone 1701568 unknown mRNA. 89 9e-17
T40786(T40786)probable SNRNP SM-like protein - fission yeast (S... 86 7e-16
AE017341_751(AE017341|pid:none) Cryptococcus neoformans var. neo... 84 2e-15
AM910987_114(AM910987|pid:none) Plasmodium knowlesi strain H chr... 84 2e-15
AL844507_190(AL844507|pid:none) Plasmodium falciparum 3D7 chromo... 83 4e-15
CR940348_847(CR940348|pid:none) Theileria annulata strain Ankara... 77 2e-13
CR382137_190(CR382137|pid:none) Debaryomyces hansenii strain CBS... 76 4e-13
CR382128_421(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 75 7e-13
EF087011_1(EF087011|pid:none) Picea sitchensis clone WS02746_G20... 75 1e-12
AE016818_470(AE016818|pid:none) Ashbya gossypii (= Eremothecium ... 70 2e-11
FN392319_306(FN392319|pid:none) Pichia pastoris GS115 chromosome... 70 3e-11
CU928174_591(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 69 5e-11
CU928168_675(CU928168|pid:none) Kluyveromyces thermotolerans str... 69 9e-11
CR380959_35(CR380959|pid:none) Candida glabrata strain CBS138 ch... 67 3e-10
CP000678_182(CP000678|pid:none) Methanobrevibacter smithii ATCC ... 57 4e-07
CP000505_420(CP000505|pid:none) Thermofilum pendens Hrk 5, compl... 57 4e-07
CP000575_928(CP000575|pid:none) Staphylothermus marinus F1, comp... 54 3e-06
AE006641_687(AE006641|pid:none) Sulfolobus solfataricus P2, comp... 53 4e-06
CP001399_1333(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 53 4e-06
(Q0W8R9) RecName: Full=Putative snRNP Sm-like protein; &AM11419... 53 5e-06
GM016639_237(GM016639|pid:none) Sequence 1469 from Patent EP1923... 52 7e-06
(O29386) RecName: Full=Putative snRNP Sm-like protein; &AE00078... 52 1e-05
(Q9V0Y8) RecName: Full=Putative snRNP Sm-like protein; &AJ24828... 51 2e-05
CP000780_93(CP000780|pid:none) Candidatus Methanoregula boonei 6... 50 3e-05
CP001338_374(CP001338|pid:none) Candidatus Methanosphaerula palu... 50 3e-05
CP001398_1739(CP001398|pid:none) Thermococcus gammatolerans EJ3,... 50 4e-05
(B6YUU5) RecName: Full=Putative snRNP Sm-like protein; &CP00085... 49 6e-05
(Q465S1) RecName: Full=Putative snRNP Sm-like protein; &CP00009... 49 8e-05
CP001140_1291(CP001140|pid:none) Desulfurococcus kamchatkensis 1... 49 8e-05
CP000493_1510(CP000493|pid:none) Hyperthermus butylicus DSM 5456... 49 8e-05
BT087412_1(BT087412|pid:none) Zea mays full-length cDNA clone ZM... 48 1e-04
AJ698365_1(AJ698365|pid:none) Euplotes vannus macronuclear gene ... 48 2e-04
AL590449_159(AL590449|pid:none) chromosome X of strain GB-M1 of ... 47 2e-04
BA000023_829(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA, ... 47 3e-04
AK227792_1(AK227792|pid:none) Arabidopsis thaliana mRNA for puta... 47 3e-04
BT035867_1(BT035867|pid:none) Zea mays full-length cDNA clone ZM... 46 5e-04
AP008211_796(AP008211|pid:none) Oryza sativa (japonica cultivar-... 46 6e-04
CS560102_1(CS560102|pid:none) Sequence 689 from Patent WO2006032... 46 6e-04
AE009441_536(AE009441|pid:none) Pyrobaculum aerophilum str. IM2,... 46 6e-04
CS559888_1(CS559888|pid:none) Sequence 475 from Patent WO2006032... 46 6e-04
DQ868529_1(DQ868529|pid:none) Bombyx mori small nuclear ribonucl... 45 8e-04
EU284828_1(EU284828|pid:none) TSA: Elaeis guineensis EgEfMPOB000... 45 8e-04
CP000561_2116(CP000561|pid:none) Pyrobaculum calidifontis JCM 11... 45 8e-04
(Q9YEQ5) RecName: Full=Putative snRNP Sm-like protein; &BA00000... 45 0.001
CP000077_1140(CP000077|pid:none) Sulfolobus acidocaldarius DSM 6... 45 0.001
FB336495_1(FB336495|pid:none) Sequence 4021 from Patent WO200711... 45 0.001
FB336499_1(FB336499|pid:none) Sequence 4025 from Patent WO200711... 45 0.001
CP000852_1498(CP000852|pid:none) Caldivirga maquilingensis IC-16... 45 0.001
CP001014_38(CP001014|pid:none) Thermoproteus neutrophilus V24Sta... 45 0.001
AE009439_220(AE009439|pid:none) Methanopyrus kandleri AV19, comp... 44 0.002
BT073897_1(BT073897|pid:none) Oncorhynchus mykiss clone omyk-evo... 44 0.002
BT077476_1(BT077476|pid:none) Lepeophtheirus salmonis Pacific fo... 44 0.002
AM910986_16(AM910986|pid:none) Plasmodium knowlesi strain H chro... 44 0.002
CP000816_974(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co... 44 0.002
CP000562_229(CP000562|pid:none) Methanoculleus marisnigri JR1, c... 44 0.002
FM992689_565(FM992689|pid:none) Candida dubliniensis CD36 chromo... 44 0.002
CP000499_476(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 44 0.002
CP000559_148(CP000559|pid:none) Methanocorpusculum labreanum Z, ... 44 0.003
BT073756_1(BT073756|pid:none) Oncorhynchus mykiss clone omyk-evo... 43 0.004
BT046929_1(BT046929|pid:none) Salmo salar clone ssal-evd-516-284... 43 0.004
BT074081_1(BT074081|pid:none) Oncorhynchus mykiss clone omyk-evo... 43 0.004
BT076212_1(BT076212|pid:none) Caligus rogercresseyi clone crog-e... 43 0.004
BT057442_1(BT057442|pid:none) Salmo salar clone ssal-evf-552-086... 43 0.004
BT073683_1(BT073683|pid:none) Oncorhynchus mykiss clone omyk-evo... 43 0.004
BT073272_1(BT073272|pid:none) Oncorhynchus mykiss clone omyk-evn... 43 0.005
BC088924_1(BC088924|pid:none) Xenopus laevis cDNA clone MGC:8508... 43 0.005
BT079318_1(BT079318|pid:none) Esox lucius clone eluc-evq-513-356... 43 0.005
BT073620_1(BT073620|pid:none) Oncorhynchus mykiss clone omyk-evn... 43 0.005
EF082147_1(EF082147|pid:none) Picea sitchensis clone WS0297_I14 ... 43 0.005
CU928176_612(CU928176|pid:none) Zygosaccharomyces rouxii strain ... 42 0.007
EF144439_1(EF144439|pid:none) Populus trichocarpa clone PX0019_H... 42 0.007
AL445065_271(AL445065|pid:none) Thermoplasma acidophilum complet... 42 0.007
CP000743_286(CP000743|pid:none) Methanococcus aeolicus Nankai-3,... 42 0.009
BC150414_1(BC150414|pid:none) Danio rerio zgc:171959, mRNA (cDNA... 42 0.009
AE016820_646(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 42 0.009
FB336509_1(FB336509|pid:none) Sequence 4035 from Patent WO200711... 42 0.009
(Q9VI10) RecName: Full=Probable small nuclear ribonucleoprotein ... 42 0.009
AE017342_303(AE017342|pid:none) Cryptococcus neoformans var. neo... 42 0.009
FB336515_1(FB336515|pid:none) Sequence 4041 from Patent WO200711... 42 0.009
CR940347_422(CR940347|pid:none) Theileria annulata strain Ankara... 42 0.009
BC078466_1(BC078466|pid:none) Xenopus laevis MGC85219 protein, m... 42 0.012
BT078860_1(BT078860|pid:none) Esox lucius clone eluc-evq-522-076... 42 0.012
CR940348_230(CR940348|pid:none) Theileria annulata strain Ankara... 42 0.012
DQ658330_1(DQ658330|pid:none) Emiliania huxleyi clone Plate2_C01... 42 0.012
BC168072_1(BC168072|pid:none) Xenopus tropicalis cDNA clone MGC:... 42 0.012
FB336539_1(FB336539|pid:none) Sequence 4065 from Patent WO200711... 42 0.012
DQ217063_1(DQ217063|pid:none) Taeniopygia guttata clone 0061P000... 42 0.012
(P62322) RecName: Full=U6 snRNA-associated Sm-like protein LSm5;... 42 0.012
(Q18786) RecName: Full=Probable small nuclear ribonucleoprotein ... 42 0.012
FB336467_1(FB336467|pid:none) Sequence 3993 from Patent WO200711... 42 0.012
CP001574_165(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 41 0.016
AM920436_866(AM920436|pid:none) Penicillium chrysogenum Wisconsi... 41 0.016
GN111354_1(GN111354|pid:none) Sequence 16135 from Patent WO20090... 41 0.016
AE014187_409(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 41 0.016
BT076425_1(BT076425|pid:none) Caligus rogercresseyi clone crog-e... 41 0.016
EU965426_1(EU965426|pid:none) Zea mays clone 285958 unknown mRNA. 41 0.020
DQ864832_1(DQ864832|pid:none) Pfiesteria piscicida clone ppi-5p-... 41 0.020
AY596297_699(AY596297|pid:none) Haloarcula marismortui ATCC 4304... 41 0.020
FB336511_1(FB336511|pid:none) Sequence 4037 from Patent WO200711... 41 0.020
BT053359_1(BT053359|pid:none) Medicago truncatula clone MTYFP_FQ... 41 0.020
CR382132_287(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 41 0.020
AM774415_1202(AM774415|pid:none) Halobacterium salinarum complet... 40 0.027
GN111410_1(GN111410|pid:none) Sequence 16191 from Patent WO20090... 40 0.027
BA000011_360(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA,... 40 0.027
Z30582_1(Z30582|pid:none) S.cerevisiae (07173) MRP-L4 gene for m... 40 0.027
CP000500_26(CP000500|pid:none) Pichia stipitis CBS 6054 chromoso... 40 0.027
AP008207_3774(AP008207|pid:none) Oryza sativa (japonica cultivar... 40 0.027
(Q06217) RecName: Full=Small nuclear ribonucleoprotein Sm D2; ... 40 0.027
AE004437_1151(AE004437|pid:none) Halobacterium sp. NRC-1, comple... 40 0.027
AP007166_339(AP007166|pid:none) Aspergillus oryzae RIB40 genomic... 40 0.035
AB017065_13(AB017065|pid:none) Arabidopsis thaliana genomic DNA,... 40 0.035
AE017341_9(AE017341|pid:none) Cryptococcus neoformans var. neofo... 40 0.035
AK176073_1(AK176073|pid:none) Arabidopsis thaliana mRNA, complet... 40 0.035
(P57670) RecName: Full=Putative snRNP Sm-like protein; &AL44506... 40 0.035
CR380952_198(CR380952|pid:none) Candida glabrata strain CBS138 c... 40 0.046
FN313866_1(FN313866|pid:none) Schistosoma japonicum isolate Anhu... 40 0.046
AK340437_1(AK340437|pid:none) Acyrthosiphon pisum ACYPI003451 mR... 40 0.046
GN111372_1(GN111372|pid:none) Sequence 16153 from Patent WO20090... 39 0.059
BX950229_1148(BX950229|pid:none) Methanococcus maripaludis strai... 39 0.059
AM494970_348(AM494970|pid:none) Leishmania braziliensis chromoso... 39 0.059
AX879753_1(AX879753|pid:none) Sequence 14658 from Patent EP10746... 39 0.059
FN392319_259(FN392319|pid:none) Pichia pastoris GS115 chromosome... 39 0.059
GN111370_1(GN111370|pid:none) Sequence 16151 from Patent WO20090... 39 0.059
CP000968_1503(CP000968|pid:none) Candidatus Korarchaeum cryptofi... 39 0.059
FB336453_1(FB336453|pid:none) Sequence 3979 from Patent WO200711... 39 0.078
GN111360_1(GN111360|pid:none) Sequence 16141 from Patent WO20090... 39 0.078
FN357550_6(FN357550|pid:none) Schistosoma mansoni genome sequenc... 39 0.078
CU928171_642(CU928171|pid:none) Kluyveromyces thermotolerans str... 39 0.078
CS560214_1(CS560214|pid:none) Sequence 801 from Patent WO2006032... 39 0.078
BT084172_1(BT084172|pid:none) Zea mays full-length cDNA clone ZM... 39 0.078
AE014296_1122(AE014296|pid:none) Drosophila melanogaster chromos... 39 0.078
CR382138_91(CR382138|pid:none) Debaryomyces hansenii strain CBS7... 39 0.078
EF145882_1(EF145882|pid:none) Populus trichocarpa clone WS0113_P... 39 0.078
FB336521_1(FB336521|pid:none) Sequence 4047 from Patent WO200711... 39 0.078
EU960564_1(EU960564|pid:none) Zea mays clone 226155 LSM7-like mR... 39 0.10
CP000968_1399(CP000968|pid:none) Candidatus Korarchaeum cryptofi... 39 0.10
FN321092_1(FN321092|pid:none) Schistosoma japonicum isolate Anhu... 39 0.10
AM502251_301(AM502251|pid:none) Leishmania infantum chromosome 3... 39 0.10
CP000742_462(CP000742|pid:none) Methanococcus vannielii SB, comp... 39 0.10
GN100015_1(GN100015|pid:none) Sequence 4796 from Patent WO200903... 38 0.13
AP003878_9(AP003878|pid:none) Oryza sativa Japonica Group genomi... 38 0.17
AB012242_19(AB012242|pid:none) Arabidopsis thaliana genomic DNA,... 38 0.17
GN111400_1(GN111400|pid:none) Sequence 16181 from Patent WO20090... 38 0.17
AK229657_1(AK229657|pid:none) Arabidopsis thaliana mRNA for Sm-l... 38 0.17
GN111488_1(GN111488|pid:none) Sequence 16269 from Patent WO20090... 37 0.23
FB887763_1(FB887763|pid:none) Sequence 107036 from Patent WO2008... 37 0.23
GN111486_1(GN111486|pid:none) Sequence 16267 from Patent WO20090... 37 0.23
CP000587_305(CP000587|pid:none) Ostreococcus lucimarinus CCE9901... 37 0.23
AC142224_5(AC142224|pid:none) Medicago truncatula clone mth2-20k... 37 0.23
EU959714_1(EU959714|pid:none) Zea mays clone 219534 small nuclea... 37 0.23
FB887761_1(FB887761|pid:none) Sequence 107034 from Patent WO2008... 37 0.23
CR380955_285(CR380955|pid:none) Candida glabrata strain CBS138 c... 37 0.23
GN111356_1(GN111356|pid:none) Sequence 16137 from Patent WO20090... 37 0.30
FB887755_1(FB887755|pid:none) Sequence 107028 from Patent WO2008... 37 0.30
AC007196_6(AC007196|pid:none) Arabidopsis thaliana chromosome 2 ... 37 0.30
CP001575_575(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 37 0.39
CS560210_1(CS560210|pid:none) Sequence 797 from Patent WO2006032... 37 0.39
EU976289_1(EU976289|pid:none) Zea mays clone 697911 small nuclea... 37 0.39
CP000584_60(CP000584|pid:none) Ostreococcus lucimarinus CCE9901 ... 37 0.39
AM468572_1(AM468572|pid:none) Vitis vinifera contig VV78X242294.... 37 0.39
GN111402_1(GN111402|pid:none) Sequence 16183 from Patent WO20090... 37 0.39
BT038364_1(BT038364|pid:none) Zea mays full-length cDNA clone ZM... 36 0.50
CP001160_395(CP001160|pid:none) Thalassiosira pseudonana CCMP133... 36 0.50
(P47017) RecName: Full=Sm-like protein LSm1; AltName: Full=SPB8 ... 36 0.50
AE017352_25(AE017352|pid:none) Cryptococcus neoformans var. neof... 36 0.50
(Q55A45) RecName: Full=Small nuclear ribonucleoprotein-associate... 36 0.66
AM180088_1961(AM180088|pid:none) Haloquadratum walsbyi DSM 16790... 36 0.66
AF542005_1(AF542005|pid:none) Griffithsia japonica U6 snRNA-asso... 36 0.66
AC116920_12(AC116920|pid:none) Dictyostelium discoideum chromoso... 36 0.66
GN111404_1(GN111404|pid:none) Sequence 16185 from Patent WO20090... 36 0.66
AE017199_38(AE017199|pid:none) Nanoarchaeum equitans Kin4-M, com... 36 0.66
BT078414_1(BT078414|pid:none) Lepeophtheirus salmonis Pacific fo... 35 0.86
CP000500_584(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 35 0.86
CP001365_2018(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 35 0.86
CR380956_238(CR380956|pid:none) Candida glabrata strain CBS138 c... 35 0.86
FM992692_313(FM992692|pid:none) Candida dubliniensis CD36 chromo... 35 0.86
FB336457_1(FB336457|pid:none) Sequence 3983 from Patent WO200711... 35 0.86
CP000505_728(CP000505|pid:none) Thermofilum pendens Hrk 5, compl... 35 0.86
AE014187_143(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 35 0.86
GN111398_1(GN111398|pid:none) Sequence 16179 from Patent WO20090... 35 0.86
CU633438_37(CU633438|pid:none) Podospora anserina genomic DNA ch... 35 1.1
AE006641_179(AE006641|pid:none) Sulfolobus solfataricus P2, comp... 35 1.1
CR382134_278(CR382134|pid:none) Debaryomyces hansenii strain CBS... 35 1.1
CR382132_1243(CR382132|pid:none) Yarrowia lipolytica strain CLIB... 35 1.1
AM270071_34(AM270071|pid:none) Aspergillus niger contig An04c010... 35 1.5
CP000682_230(CP000682|pid:none) Metallosphaera sedula DSM 5348, ... 35 1.5
FB887751_1(FB887751|pid:none) Sequence 107024 from Patent WO2008... 35 1.5
AP007157_708(AP007157|pid:none) Aspergillus oryzae RIB40 genomic... 35 1.5
AE014134_2851(AE014134|pid:none) Drosophila melanogaster chromos... 35 1.5
CP000500_453(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 34 1.9
EU016610_18(EU016610|pid:none) Uncultured marine microorganism H... 34 1.9
DQ311193_1(DQ311193|pid:none) Bombyx mori U6 snRNA-associated Sm... 34 1.9
CP000254_1171(CP000254|pid:none) Methanospirillum hungatei JF-1,... 34 1.9
(Q54HH8) RecName: Full=Small nuclear ribonucleoprotein Sm D-like... 34 1.9
AY089842_1(AY089842|pid:none) Xiphorhynchus triangularis interme... 34 2.5
AY089864_1(AY089864|pid:none) Xiphorhynchus triangularis bangsi ... 34 2.5
GN111434_1(GN111434|pid:none) Sequence 16215 from Patent WO20090... 34 2.5
AL513466_20(AL513466|pid:none) Neurospora crassa DNA linkage gro... 34 2.5
CP000883_125(CP000883|pid:none) Hemiselmis andersenii chromosome... 34 2.5
DQ311312_1(DQ311312|pid:none) Bombyx mori small nuclear ribonucl... 34 2.5
FB336501_1(FB336501|pid:none) Sequence 4027 from Patent WO200711... 34 2.5
FN357345_14(FN357345|pid:none) Schistosoma mansoni genome sequen... 34 2.5
CR940348_600(CR940348|pid:none) Theileria annulata strain Ankara... 34 2.5
(O74966) RecName: Full=Probable small nuclear ribonucleoprotein ... 33 3.3
FM992695_663(FM992695|pid:none) Candida dubliniensis CD36 chromo... 33 3.3
(Q05856) RecName: Full=Small nuclear ribonucleoprotein-associate... 33 3.3
AY232087_1(AY232087|pid:none) Drosophila yakuba clone yak-ad_SmB... 33 3.3
AE016819_24(AE016819|pid:none) Ashbya gossypii (= Eremothecium g... 33 3.3
CR382128_545(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 33 3.3
CP000562_1558(CP000562|pid:none) Methanoculleus marisnigri JR1, ... 33 4.3
CU928170_252(CU928170|pid:none) Kluyveromyces thermotolerans str... 33 4.3
CR380958_237(CR380958|pid:none) Candida glabrata strain CBS138 c... 33 4.3
CU633438_898(CU633438|pid:none) Podospora anserina genomic DNA c... 33 4.3
BA000023_254(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA, ... 33 5.6
GN111394_1(GN111394|pid:none) Sequence 16175 from Patent WO20090... 33 5.6
BA000002_672(BA000002|pid:none) Aeropyrum pernix K1 DNA, complet... 33 5.6
AM270128_11(AM270128|pid:none) Aspergillus niger contig An07c010... 32 7.2
AK341565_1(AK341565|pid:none) Acyrthosiphon pisum ACYPI006936 mR... 32 9.5
EU415262_1(EU415262|pid:none) Drosophila melanogaster clone glu_... 32 9.5
(P23059) RecName: Full=N-terminal acetyltransferase C complex su... 32 9.5
AC007865_41(AC007865|pid:none) Trypanosoma brucei chromosome 2 c... 32 9.5

>AC117075_88(AC117075|pid:none) Dictyostelium discoideum chromosome
2 map 5201047-5455781 strain AX4, complete sequence.
Length = 98

Score = 159 bits (402), Expect = 4e-38
Identities = 83/97 (85%), Positives = 83/97 (85%)
Frame = +2

Query: 74 MDKREEGTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETXXXXX 253
MDKREEGTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEET
Sbjct: 1 MDKREEGTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVE 60

Query: 254 XXXXXXXXXIRNIKRNIKMLFVRGDGVILISPPLRTS 364
IRNIKRNIKMLFVRGDGVILISPPLRTS
Sbjct: 61 KDEETDEEIIRNIKRNIKMLFVRGDGVILISPPLRTS 97

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 519,917,206
Number of extensions: 7626084
Number of successful extensions: 22720
Number of sequences better than 10.0: 244
Number of HSP's gapped: 22450
Number of HSP's successfully gapped: 244
Length of query: 173
Length of database: 1,061,185,681
Length adjustment: 120
Effective length of query: 53
Effective length of database: 668,971,921
Effective search space: 35455511813
Effective search space used: 35455511813
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.57 gvh: 0.33 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum

>> prediction for Contig-U05280-1 is nuc

VS (DIR, S) 3
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0