NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05275-1
Contig ID Contig-U05275-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U05275-1 (Contig-U05275-1Q) /CSM_Contig/Contig-U05275-1Q.Seq.d
CACCACCACATTCAAATATATACAATTAATATATATATATTTAACACTCG
CAAACACCATCACATCATCTCGTATTTGCATCTTTTACATACTTTTAAAA
AATAAAGAAAACAGTAGTAATAATTTAATTATATATACTCTTTTTTTCTT
TATTTTTTATTTTTTTTTCTAAAACTCCCTCACTCATCATATATAATTTT
TGTACATACACTTTGTGTTTAAATCTTTTTTTTTTTTTTTTTTTTTAATT
ATTACAATCACTTAAATAATTAGAAAAAAAAAATTAACAAAAAAAAAAAA
AAAAAAAAGTAAATAAAAAAAAAAAAAAAAAAAAAAAATAATAAAAAAAA
TCTTATAATTGTTTGTAATTAACTTAGTCTGTAGTAATAGTACATTGCTC
ATTCTAAAATTCTCTCAATTTCTTTTTTTTTTAGAAAATAACTATCAATA
ATAAAAAAAAGAATTATAATATATAATATTTTTTTTTTCACAATTCAAAA
TAATCATTTAAAAATAAAAAAAATAAAAAAAAATAAAAAAAATAAAAAAA
TAACGAATTAAAATGTCAAATAAATAAAAA
Gap no gap
Contig length 580
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 6421074
End point 6420496
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U05275
List of clone(s) 

est1=SSG680E,1,581
Translated Amino Acid sequence 
TTTFKYIQLIYIYLTLANTITSSRICIFYILLKNKENSSNNLIIYTLFFFIFYFFF*nsl
thhi*flyihfvfksffffffliitit*iirkkkltkkkkkksk*kkkkkkkiikkil*l
fvinlvcsnstllilkfsqflfflennyq**kkel*yiifffsqfkiii*k*kk*kkikk
ikk*rikmsnk*k
Translated Amino Acid sequence (All Frames) 
Frame A:
hhhiqiytiniyifntrkhhhiisylhllhtfkk*rkq***fnyiysfflyflffflklp
hssyiifvhtlcv*ifffffffnyynhlnn*kkkinkkkkkkk*ikkkkkkknnkknlii
vcn*lsl***yiahskilsisfffrk*lsiikkriiiyniffftiqnnhlkikkikknkk
nkkitn*nvk*ik


Frame B:
TTTFKYIQLIYIYLTLANTITSSRICIFYILLKNKENSSNNLIIYTLFFFIFYFFF*nsl
thhi*flyihfvfksffffffliitit*iirkkkltkkkkkksk*kkkkkkkiikkil*l
fvinlvcsnstllilkfsqflfflennyq**kkel*yiifffsqfkiii*k*kk*kkikk
ikk*rikmsnk*k


Frame C:
pphsniyn*yiyi*hsqtpshhlvfasftyf*kikktvvii*lyilffslffiffsktps
liiynfctytlclnlffffff*llqslk*lekkn*qkkkkkkvnkkkkkkkk**kksync
l*lt*svvivhcsf*nslnffff*kitinnkkknyni*yfffhnsk*sfknkknkkk*kk
*knnelkcqink
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05275-1 (Contig-U05275-1Q)
/CSM_Contig/Contig-U05275-1Q.Seq.d
         (580 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05275-1 (Contig-U05275-1Q) /CSM_Contig/Conti...   198  5e-51
Contig-U09302-1 (Contig-U09302-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U07718-1 (Contig-U07718-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U11213-1 (Contig-U11213-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U09935-1 (Contig-U09935-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U04373-1 (Contig-U04373-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U01530-1 (Contig-U01530-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U14009-1 (Contig-U14009-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U12190-1 (Contig-U12190-1Q) /CSM_Contig/Conti...    36  0.040
Contig-U11245-1 (Contig-U11245-1Q) /CSM_Contig/Conti...    36  0.040

>Contig-U05275-1 (Contig-U05275-1Q) /CSM_Contig/Contig-U05275-1Q.Seq.d
          Length = 580

 Score =  198 bits (100), Expect = 5e-51
 Identities = 100/100 (100%)
 Strand = Plus / Plus

                                                                       
Query: 41  ttaacactcgcaaacaccatcacatcatctcgtatttgcatcttttacatacttttaaaa 100
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  ttaacactcgcaaacaccatcacatcatctcgtatttgcatcttttacatacttttaaaa 100

                                                   
Query: 101 aataaagaaaacagtagtaataatttaattatatatactc 140
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 aataaagaaaacagtagtaataatttaattatatatactc 140


 Score =  196 bits (99), Expect = 2e-50
 Identities = 139/159 (87%)
 Strand = Plus / Plus

                                                                       
Query: 351 tcttataattgtttgtaattaacttagtctgtagtaatagtacattgctcattctaaaat 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tcttataattgtttgtaattaacttagtctgtagtaatagtacattgctcattctaaaat 410

                                                                       
Query: 411 tctctcaatttcnnnnnnnnnnagaaaataactatcaataataaaaaaaagaattataat 470
           ||||||||||||          ||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tctctcaatttcttttttttttagaaaataactatcaataataaaaaaaagaattataat 470

                                                  
Query: 471 atataatannnnnnnnnncacaattcaaaataatcattt 509
           ||||||||          |||||||||||||||||||||
Sbjct: 471 atataatattttttttttcacaattcaaaataatcattt 509


 Score =  113 bits (57), Expect = 2e-25
 Identities = 57/57 (100%)
 Strand = Plus / Plus

                                                                    
Query: 169 ctaaaactccctcactcatcatatataatttttgtacatacactttgtgtttaaatc 225
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 ctaaaactccctcactcatcatatataatttttgtacatacactttgtgtttaaatc 225


 Score = 60.0 bits (30), Expect = 3e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 551 taacgaattaaaatgtcaaataaataaaaa 580
           ||||||||||||||||||||||||||||||
Sbjct: 551 taacgaattaaaatgtcaaataaataaaaa 580


 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 247 aattattacaatcacttaaataattag 273
           |||||||||||||||||||||||||||
Sbjct: 247 aattattacaatcacttaaataattag 273


 Score = 32.2 bits (16), Expect = 0.63
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 96  taaaaaataaagaaaa 111
           ||||||||||||||||
Sbjct: 159 taaaaaataaagaaaa 144


 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                        
Query: 1  caccaccacattca 14
          ||||||||||||||
Sbjct: 1  caccaccacattca 14


 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 447 aataataaaaaaaa 460
           ||||||||||||||
Sbjct: 337 aataataaaaaaaa 350


>Contig-U09302-1 (Contig-U09302-1Q) /CSM_Contig/Contig-U09302-1Q.Seq.d
          Length = 1842

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 447  aataataaaaaaaagaattataat 470
            |||||||||||||| |||||||||
Sbjct: 1445 aataataaaaaaaaaaattataat 1422


>Contig-U07718-1 (Contig-U07718-1Q) /CSM_Contig/Contig-U07718-1Q.Seq.d
          Length = 1404

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 447 aataataaaaaaaagaattataatatataata 478
           |||||||||||||| ||| |||||||| ||||
Sbjct: 23  aataataaaaaaaataataataatataaaata 54


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,191
Number of Sequences: 6905
Number of extensions: 17191
Number of successful extensions: 2550
Number of sequences better than 10.0: 803
length of query: 580
length of database: 5,674,871
effective HSP length: 16
effective length of query: 564
effective length of database: 5,564,391
effective search space: 3138316524
effective search space used: 3138316524
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7.17
Homology vs DNA 
Query= Contig-U05275-1 (Contig-U05275-1Q) /CSM_Contig/Contig-U05275-1Q.Seq.d
         (580 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...   190   e-117  8
(AU073326) Dictyostelium discoideum slug cDNA, clone SSG680.      198   1e-77  3
(U66913) Dictyostelium discoideum ORF DG1040 gene, partial cds.   143   2e-49  6
(C89949) Dictyostelium discoideum slug cDNA, clone SSG680.        143   2e-48  4
(AE014186) Plasmodium falciparum 3D7 chromosome 11, complete...    38   0.062  8
(AC186456) Atelerix albiventris clone LB4-151K18, WORKING DR...    50   0.098  1
(AC182344) Atelerix albiventris clone LB4-72O15, WORKING DRA...    50   0.098  1
(AC234695) Solanum lycopersicum chromosome 9 clone C09HBa017...    42   0.18   5
(AM285310) Spiroplasma citri GII3-3X chromosome, contig Cont...    38   0.19   3
(AL844506) Plasmodium falciparum 3D7 chromosome 7.                 38   0.21   7
(AC234359) Solanum lycopersicum chromosome 9 clone C09SLe003...    42   0.27   4
(AR539808) Sequence 4370 from patent US 6737248.                   48   0.39   1
(AR538670) Sequence 3232 from patent US 6737248.                   48   0.39   1
(AR358252) Sequence 4370 from patent US 6593114.                   48   0.39   1
(AR357114) Sequence 3232 from patent US 6593114.                   48   0.39   1
(CP000730) Staphylococcus aureus subsp. aureus USA300_TCH151...    48   0.39   1
(CP000255) Staphylococcus aureus subsp. aureus USA300_FPR375...    48   0.39   1
(CP000253) Staphylococcus aureus subsp. aureus NCTC 8325, co...    48   0.39   1
(CP000046) Staphylococcus aureus subsp. aureus COL, complete...    48   0.39   1
(AP009351) Staphylococcus aureus subsp. aureus str. Newman D...    48   0.39   1
(AX349035) Sequence 493 from Patent WO0202807.                     34   0.66   5
(EA102680) Sequence 63 from patent US 7195870.                     34   0.70   3
(AX323579) Sequence 67 from Patent WO0192565.                      34   0.70   3
(AX277900) Sequence 63 from Patent WO0177375.                      34   0.70   3
(GM995927) Sequence 67 from Patent EP2014776.                      34   0.70   3
(AX458569) Sequence 115 from Patent WO0246454.                     34   0.70   3
(CR388140) Zebrafish DNA sequence from clone CH211-190G11.         32   0.82   2
(CT645718) Danio rerio EST, clone ZF_mu_131m04 5'.                 32   1.1    2
(CT645719) Danio rerio EST, clone ZF_mu_131m04 3'.                 32   1.1    2
(AE001362) Plasmodium falciparum 3D7 chromosome 2, complete ...    46   1.5    1
(AC153453) Bos taurus clone CH240-18L6, *** SEQUENCING IN PR...    46   1.5    1
(CU929031) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.5    1
(AC224577) Bos taurus clone CH240-481F14, WORKING DRAFT SEQU...    46   1.5    1
(DE971933) Macropus eugenii DNA, BAC clone: MEB1-177F13_R, 3...    46   1.5    1
(CR794590) GR0AAA11DH03FM1 INRA BAC Bos taurus genomic clone...    46   1.5    1
(BM273800) PfESToaa59g04.y1 Plasmodium falciparum 3D7 gameto...    46   1.5    1
(BM273512) PfESToaa51g03.y1 Plasmodium falciparum 3D7 gameto...    46   1.5    1
(EY377121) CAXA16546.fwd CAXA Helobdella robusta Subtracted ...    46   1.5    1
(EY376127) CAXA16005.fwd CAXA Helobdella robusta Subtracted ...    46   1.5    1
(EY368175) CAXA1166.fwd CAXA Helobdella robusta Subtracted L...    46   1.5    1
(CP001083) Clostridium botulinum Ba4 str. 657, complete genome.    46   1.5    1
(EE568410) BNZB_UP_163_E08_29SEP2005_056 Brassica napus BNZB...    36   2.3    2
(DD010735) Diagnosis of known genetic Parameters within the ...    32   2.4    2
(DU119864) KBrH105E19R Brassica rapa BAC library KBrH Brassi...    36   2.8    2
(CW979331) KBrH001O22R KBrH, Brassica rapa HindIII BAC libra...    36   2.8    2
(AX344555) Sequence 6 from Patent WO0200932.                       32   2.9    2
(DU978802) KBrH064A03F KBrH (HindIII) BAC library Brassica r...    36   3.1    2
(FI747861) BOT01-97F19TF BOT01 Brassica oleracea genomic clo...    36   3.2    2
(DX910212) KBrH046L20R KBrH, Brassica rapa HindIII BAC libra...    36   3.2    2
(DU124716) KBrH110J06R Brassica rapa BAC library KBrH Brassi...    36   3.3    2
(DX910208) KBrH046L18R KBrH, Brassica rapa HindIII BAC libra...    36   3.4    2
(DV775970) Hw_Fat_36_050805_B07 Bos taurus CF-24-HW fat cDNA...    32   3.8    2
(CR855084) Oryza sativa genomic DNA, chromosome 4, BAC clone...    44   4.0    2
(AV373354) Mus musculus adult male colon cDNA, RIKEN full-le...    32   4.2    2
(CR855130) Oryza sativa genomic DNA, chromosome 4, BAC clone...    44   4.3    2
(AJ856408) Brassica rapa subsp. pekinensis GSS, clone KBrH05...    36   4.9    2
(CL021844) CH216-8P15_RM1.1 CH216 Xenopus (Silurana) tropica...    32   5.5    3
(AM426556) Vitis vinifera contig VV78X108083.24, whole genom...    38   5.5    2
(AL844508) Plasmodium falciparum 3D7 chromosome 9.                 40   5.5    7
(CU463871) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   5.8    3
(BX649472) Zebrafish DNA sequence from clone CH211-214K9 in ...    44   6.0    1
(AC164089) Mus musculus BAC clone RP23-70G12 from chromosome...    44   6.0    1
(AC150894) Mus musculus BAC clone RP24-409D4 from chromosome...    44   6.0    1
(AP008210) Oryza sativa (japonica cultivar-group) genomic DN...    44   6.0    1
(AP008208) Oryza sativa (japonica cultivar-group) genomic DN...    44   6.0    1
(AP004229) Oryza sativa Japonica Group genomic DNA, chromoso...    44   6.0    1
(AP004212) Oryza sativa Japonica Group genomic DNA, chromoso...    44   6.0    1
(AL663020) Oryza sativa genomic DNA, chromosome 4, BAC clone...    44   6.0    1
(AL662983) Oryza sativa genomic DNA, chromosome 4, BAC clone...    44   6.0    1
(EA704582) Sequence 83461 from patent US 7365185.                  44   6.0    1
(EA688245) Sequence 67124 from patent US 7365185.                  44   6.0    1
(EA685223) Sequence 64102 from patent US 7365185.                  44   6.0    1
(EA678355) Sequence 57234 from patent US 7365185.                  44   6.0    1
(EA648794) Sequence 27673 from patent US 7365185.                  44   6.0    1
(AR396927) Sequence 2942 from patent US 6617156.                   44   6.0    1
(AC183337) Oryctolagus cuniculus clone LB1-162M15, complete ...    44   6.0    1
(AC118959) Rattus norvegicus clone CH230-433K4, *** SEQUENCI...    44   6.0    1
(AC115271) Rattus norvegicus clone CH230-93B14, *** SEQUENCI...    44   6.0    1
(AC098123) Rattus norvegicus clone CH230-133K13, WORKING DRA...    44   6.0    1
(CU929947) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.0    1
(CU915343) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.0    1
(CU856000) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.0    1
(CU633359) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.0    1
(AC087869) Mus musculus clone RP23-297D13, *** SEQUENCING IN...    44   6.0    1
(CU468543) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.0    1
(CT967311) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.0    1
(CR392339) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.0    1
(AP010187) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   6.0    1
(AP007805) Lotus japonicus genomic DNA, clone: LjT09P09, TM1...    44   6.0    1
(AC234078) Choloepus hoffmanni clone CH281-235K7, WORKING DR...    44   6.0    1
(AC231248) Choloepus hoffmanni clone CH281-569H2, WORKING DR...    44   6.0    1
(AC231245) Choloepus hoffmanni clone CH281-167B20, WORKING D...    44   6.0    1
(AC211845) Otolemur garnettii clone CH256-28B9, WORKING DRAF...    44   6.0    1
(AC203553) Medicago truncatula clone mth2-33n7, WORKING DRAF...    44   6.0    1
(AC175797) Atelerix albiventris clone LB4-357F21, WORKING DR...    44   6.0    1
(FI708385) BOT01-54K19TF BOT01 Brassica oleracea genomic clo...    44   6.0    1
(AQ796913) nbxb0071O08r CUGI Rice BAC Library Oryza sativa J...    44   6.0    1
(CL933348) OA_ABa0042L11.f OA_ABa Oryza australiensis genomi...    44   6.0    1
(CL769278) OR_BBa0141L20.r OR_BBa Oryza nivara genomic clone...    44   6.0    1
(BH959670) odh52a02.g1 B.oleracea002 Brassica oleracea genom...    44   6.0    1
(AG401469) Mus musculus molossinus DNA, clone:MSMg01-236B17....    44   6.0    1
(EL399508) CFFS10835.b1_E21.ab1 CFF(LMS) safflower Carthamus...    44   6.0    1
(EL387977) CFFM25311.b1_N16.ab1 CFF(LMS) safflower Carthamus...    44   6.0    1
(AV776793) Lotus japonicus cDNA clone:MPDL005g10_f, 3' end.        44   6.0    1
(DW268915) UI-S-GN1-acc-b-08-0-UI.s1 UI-S-GN1 Euprymna scolo...    44   6.0    1
(CU866144) Podospora anserina mRNA sequence from clone HH0AB...    44   6.0    1
(CT735108) Danio rerio EST, clone ZF_mu_247e01 3'.                 44   6.0    1
(BP066359) Lotus japonicus cDNA, clone:GENLf074e12, 3' end.        44   6.0    1
(BP064560) Lotus japonicus cDNA, clone:GENLf042d09, 3' end.        44   6.0    1
(BP061517) Lotus japonicus cDNA, clone:GENf074b12, 3' end.         44   6.0    1
(BP054800) Lotus japonicus cDNA, clone:SPDL044h11_f, 3' end.       44   6.0    1
(GH575179) CCAS2865.g1_c Aiptasia pallida clone CC7 holobion...    44   6.0    1
(BX255967) Zebrafish DNA sequence from clone CH211-191G22 in...    42   6.2    2
(AC233259) Felis catus BAC clone FCAB-21H12 from chromosome ...    38   7.1    2
(AC022893) Homo sapiens chromosome 8, clone RP11-531A24, com...    42   7.2    2
(CU954471) Brassica napus GSS, clone JBnB145C01, end read, p...    34   8.0    2
(AE014185) Plasmodium falciparum 3D7 chromosome 10, complete...    36   8.3    7
(AM448821) Vitis vinifera contig VV78X040113.3, whole genome...    38   8.9    2
(DU123146) KBrH104E04R Brassica rapa BAC library KBrH Brassi...    36   9.1    2
(BZ003416) oeh09a02.g1 B.oleracea002 Brassica oleracea genom...    34   9.2    2
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete...    36   9.4    11
(ET086857) QM0AAA10BC02FM1 CCL1 Citrus clementina genomic cl...    34   9.7    2

>(AC116979) Dictyostelium discoideum chromosome 2 map 6445720-6776760
              strain AX4, complete sequence.
          Length = 331039

 Score =  190 bits (96), Expect(8) = e-117
 Identities = 99/100 (99%)
 Strand = Plus / Plus


Query: 41     ttaacactcgcaaacaccatcacatcatctcgtatttgcatcttttacatacttttaaaa 100
              |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 107313 ttaacactcgcaaacaccatcacatcatttcgtatttgcatcttttacatacttttaaaa 107372


Query: 101    aataaagaaaacagtagtaataatttaattatatatactc 140
              ||||||||||||||||||||||||||||||||||||||||
Sbjct: 107373 aataaagaaaacagtagtaataatttaattatatatactc 107412

 Score =  143 bits (72), Expect(8) = e-117
 Identities = 72/72 (100%)
 Strand = Plus / Plus


Query: 351    tcttataattgtttgtaattaacttagtctgtagtaatagtacattgctcattctaaaat 410
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107622 tcttataattgtttgtaattaacttagtctgtagtaatagtacattgctcattctaaaat 107681


Query: 411    tctctcaatttc 422
              ||||||||||||
Sbjct: 107682 tctctcaatttc 107693

 Score =  113 bits (57), Expect(8) = e-117
 Identities = 57/57 (100%)
 Strand = Plus / Plus


Query: 169    ctaaaactccctcactcatcatatataatttttgtacatacactttgtgtttaaatc 225
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107441 ctaaaactccctcactcatcatatataatttttgtacatacactttgtgtttaaatc 107497

 Score = 54.0 bits (27), Expect(8) = e-117
 Identities = 27/27 (100%)
 Strand = Plus / Plus


Query: 247    aattattacaatcacttaaataattag 273
              |||||||||||||||||||||||||||
Sbjct: 107519 aattattacaatcacttaaataattag 107545

 Score = 42.1 bits (21), Expect(8) = e-117
 Identities = 21/21 (100%)
 Strand = Plus / Plus


Query: 489    cacaattcaaaataatcattt 509
              |||||||||||||||||||||
Sbjct: 107760 cacaattcaaaataatcattt 107780

 Score = 40.1 bits (20), Expect(8) = e-117
 Identities = 20/20 (100%)
 Strand = Plus / Plus


Query: 433    agaaaataactatcaataat 452
              ||||||||||||||||||||
Sbjct: 107705 agaaaataactatcaataat 107724

 Score = 34.2 bits (17), Expect(8) = e-117
 Identities = 17/17 (100%)
 Strand = Plus / Plus


Query: 462    aattataatatataata 478
              |||||||||||||||||
Sbjct: 107734 aattataatatataata 107750

 Score = 30.2 bits (15), Expect(8) = e-117
 Identities = 15/15 (100%)
 Strand = Plus / Plus


Query: 1      caccaccacattcaa 15
              |||||||||||||||
Sbjct: 107273 caccaccacattcaa 107287

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 499,009,678
Number of extensions: 36287197
Number of successful extensions: 3404138
Number of sequences better than 10.0: 123
Length of query: 580
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 557
Effective length of database: 102,190,702,835
Effective search space: 56920221479095
Effective search space used: 56920221479095
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 8. 1
Homology vs Protein 
Query= Contig-U05275-1 (Contig-U05275-1Q) /CSM_Contig/Contig-U05275-1Q.Seq.d
         (580 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 327,099,899
Number of extensions: 1887765
Number of successful extensions: 2272
Number of sequences better than 10.0: 0
Number of HSP's gapped: 2272
Number of HSP's successfully gapped: 0
Length of query: 193
Length of database: 1,061,185,681
Length adjustment: 122
Effective length of query: 71
Effective length of database: 662,435,025
Effective search space: 47032886775
Effective search space used: 47032886775
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.90  gvh: 0.52  alm: 0.32  top: 0.53  tms: 0.00  mit: 0.42  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 24.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall

>> prediction for Contig-U05275-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0