NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05259-1
Contig ID Contig-U05259-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U05259-1 (Contig-U05259-1Q) /CSM_Contig/Contig-U05259-1Q.Seq.d
CCAGATTCATTATCAAAACTTTCATCAAAATTTGAACCATCATCAATTGT
AAAAGATTTAGTTAGTGATTTACCACCATTTTATTTCTCATTTAATGTTA
CAAACTCGTCAATGACATTACCAATGAATATGACATGGGATAAATTCAAT
GTCAGATATTAATATTAGCGCACCACATATTGAATTCCCATTAGATTTCT
CTGCAAGTAATATGACATTCAATATTAGTGTTGAAGCTGAAACATTTCCA
ATCGCTATGAACCTTATTGCAAACAAAAGTGATGTTCCAATTTCATTGGG
TATCTATGGTGCTGATAGTATACCAGTGACTTTAAACGTTGGTAAAATGG
AGGCACCTCTATTAAACTATTTCTTCTTTGCTATATTTGGTTCAATAAAT
GGGATTTTATTAATTTGGGTTATCATTCAACAAATTTGTATTCAAAATTT
AAAGAAACGTTTAGATACAATCGATATTTCAAATGATGTATTAAAAGGTA
AAAGATATAAAAGAGGAAATGTTTGGTATAAATCAATCAACTCTGATGAT
GTTACAAGTGATAATGAAATTTTAAATAATGGTCGTAGGTCGTAGTTCAA
ATCGTGATCAAATAATTGATATAAATAATACTGATAATAATAATAATAAT
AATAACATGAATCAATCATTAATATCAATATGTAAACAATGTGGTCAAAC
TAATGGTAAAACTAAATTTTGTTTTGATTGTGGATCTAGTTTAATTAATT
AGATAAAAAAAATATACAAAAAAAAAATAAAAAAAAAGATCTAGATCTTT
AATTTC
Gap no gap
Contig length 806
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 1337366
End point 1338174
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05259
List of clone(s) 

est1=SSG580E,1,807
Translated Amino Acid sequence 
qihyqnfhqnlnhhql*ki*lviyhhfishlmlqtrq*hyq*i*HGINSMSDINISAPHI
EFPLDFSASNMTFNISVEAETFPIAMNLIANKSDVPISLGIYGADSIPVTLNVGKMEAPL
LNYFFFAIFGSINGILLIWVIIQQICIQNLKKRLDTIDISNDVLKGKRYKRGNVWYKSIN
SDDVTSDNEILNNGRRS*fks*snn*yk*y********hesiininm*tmwsn*w*n*il
f*lwi*fn*ldkkniqkknkkkdldl*f
Translated Amino Acid sequence (All Frames) 
Frame A:
pdslsklsskfepssivkdlvsdlppfyfsfnvtnssmtlpmnmtwdkfnvry*y*rtty
*ipirflck*ydiqy*c*s*nisnryepyckqk*csnfigylwc**ytsdfkrw*nggts
iklfllcyiwfnkwdfinlgyhstnlyskfketfrynryfk*cikr*ki*krkclv*inq
l**cyk***nfk*ws*vvvqivik*li*iiliiiiiiit*inh*yqyvnnvvklmvklnf
vlivdlv*lir*kkytkkk*kkrsrsli


Frame B:
qihyqnfhqnlnhhql*ki*lviyhhfishlmlqtrq*hyq*i*HGINSMSDINISAPHI
EFPLDFSASNMTFNISVEAETFPIAMNLIANKSDVPISLGIYGADSIPVTLNVGKMEAPL
LNYFFFAIFGSINGILLIWVIIQQICIQNLKKRLDTIDISNDVLKGKRYKRGNVWYKSIN
SDDVTSDNEILNNGRRS*fks*snn*yk*y********hesiininm*tmwsn*w*n*il
f*lwi*fn*ldkkniqkknkkkdldl*f


Frame C:
rfiiktfiki*tiinckrfs**fttilfli*cyklvnditneydmg*iqcqililahhil
nsh*islqvi*hsilvlklkhfqsl*tllqtkvmfqfhwvsmvlivyq*l*tlvkwrhly
*tissllylvq*mgfy*fglsfnkfvfki*rnv*iqsifqmmy*kvkdikeemfginqst
lmmlqvimkf*imvvgrssnrdqiidinntdnnnnnnnmnqslisickqcgqtngktkfc
fdcgsslin*ikkiykkkikkki*ifnf
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05259-1 (Contig-U05259-1Q)
/CSM_Contig/Contig-U05259-1Q.Seq.d
         (806 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05259-1 (Contig-U05259-1Q) /CSM_Contig/Conti...  1209  0.0
Contig-U10688-1 (Contig-U10688-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U08227-1 (Contig-U08227-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U12529-1 (Contig-U12529-1Q) /CSM_Contig/Conti...    36  0.057
Contig-U11814-1 (Contig-U11814-1Q) /CSM_Contig/Conti...    36  0.057
Contig-U10383-1 (Contig-U10383-1Q) /CSM_Contig/Conti...    36  0.057
Contig-U09907-1 (Contig-U09907-1Q) /CSM_Contig/Conti...    36  0.057
Contig-U09294-1 (Contig-U09294-1Q) /CSM_Contig/Conti...    36  0.057
Contig-U12803-1 (Contig-U12803-1Q) /CSM_Contig/Conti...    34  0.22
Contig-U12400-1 (Contig-U12400-1Q) /CSM_Contig/Conti...    34  0.22

>Contig-U05259-1 (Contig-U05259-1Q) /CSM_Contig/Contig-U05259-1Q.Seq.d
          Length = 806

 Score = 1209 bits (610), Expect = 0.0
 Identities = 610/610 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagattcattatcaaaactttcatcaaaatttgaaccatcatcaattgtaaaagattta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ccagattcattatcaaaactttcatcaaaatttgaaccatcatcaattgtaaaagattta 60

                                                                       
Query: 61  gttagtgatttaccaccattttatttctcatttaatgttacaaactcgtcaatgacatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gttagtgatttaccaccattttatttctcatttaatgttacaaactcgtcaatgacatta 120

                                                                       
Query: 121 ccaatgaatatgacatgggataaattcaatgtcagatattaatattagcgcaccacatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccaatgaatatgacatgggataaattcaatgtcagatattaatattagcgcaccacatat 180

                                                                       
Query: 181 tgaattcccattagatttctctgcaagtaatatgacattcaatattagtgttgaagctga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgaattcccattagatttctctgcaagtaatatgacattcaatattagtgttgaagctga 240

                                                                       
Query: 241 aacatttccaatcgctatgaaccttattgcaaacaaaagtgatgttccaatttcattggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aacatttccaatcgctatgaaccttattgcaaacaaaagtgatgttccaatttcattggg 300

                                                                       
Query: 301 tatctatggtgctgatagtataccagtgactttaaacgttggtaaaatggaggcacctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tatctatggtgctgatagtataccagtgactttaaacgttggtaaaatggaggcacctct 360

                                                                       
Query: 361 attaaactatttcttctttgctatatttggttcaataaatgggattttattaatttgggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attaaactatttcttctttgctatatttggttcaataaatgggattttattaatttgggt 420

                                                                       
Query: 421 tatcattcaacaaatttgtattcaaaatttaaagaaacgtttagatacaatcgatatttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tatcattcaacaaatttgtattcaaaatttaaagaaacgtttagatacaatcgatatttc 480

                                                                       
Query: 481 aaatgatgtattaaaaggtaaaagatataaaagaggaaatgtttggtataaatcaatcaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaatgatgtattaaaaggtaaaagatataaaagaggaaatgtttggtataaatcaatcaa 540

                                                                       
Query: 541 ctctgatgatgttacaagtgataatgaaattttaaataatggtcgtaggtcgtagttcaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctctgatgatgttacaagtgataatgaaattttaaataatggtcgtaggtcgtagttcaa 600

                     
Query: 601 atcgtgatca 610
           ||||||||||
Sbjct: 601 atcgtgatca 610


 Score =  196 bits (99), Expect = 3e-50
 Identities = 99/99 (100%)
 Strand = Plus / Plus

                                                                       
Query: 656 catgaatcaatcattaatatcaatatgtaaacaatgtggtcaaactaatggtaaaactaa 715
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 catgaatcaatcattaatatcaatatgtaaacaatgtggtcaaactaatggtaaaactaa 715

                                                  
Query: 716 attttgttttgattgtggatctagtttaattaattagat 754
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 716 attttgttttgattgtggatctagtttaattaattagat 754


 Score = 38.2 bits (19), Expect = 0.014
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 788 gatctagatctttaatttc 806
           |||||||||||||||||||
Sbjct: 788 gatctagatctttaatttc 806


>Contig-U10688-1 (Contig-U10688-1Q) /CSM_Contig/Contig-U10688-1Q.Seq.d
          Length = 1738

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 710  aactaaattttgttttgatt 729
            ||||||||||||||||||||
Sbjct: 1700 aactaaattttgttttgatt 1681


>Contig-U08227-1 (Contig-U08227-1Q) /CSM_Contig/Contig-U08227-1Q.Seq.d
          Length = 1211

 Score = 38.2 bits (19), Expect = 0.014
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 565 tgaaattttaaataatggt 583
           |||||||||||||||||||
Sbjct: 101 tgaaattttaaataatggt 119


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,349
Number of Sequences: 6905
Number of extensions: 13349
Number of successful extensions: 1409
Number of sequences better than 10.0: 162
length of query: 806
length of database: 5,674,871
effective HSP length: 16
effective length of query: 790
effective length of database: 5,564,391
effective search space: 4395868890
effective search space used: 4395868890
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7.16
Homology vs DNA 
Query= Contig-U05259-1 (Contig-U05259-1Q) /CSM_Contig/Contig-U05259-1Q.Seq.d
         (806 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C89886) Dictyostelium discoideum slug cDNA, clone SSG580.        864   0.0    4
(AU073288) Dictyostelium discoideum slug cDNA, clone SSG580.      301   e-123  2
(AC120503) Didelphis virginiana clone LB3-158G23, WORKING DR...    52   0.035  1
(AC027303) Homo sapiens chromosome 5 clone CTB-100B21, WORKI...    38   0.082  3
(EJ814653) 1093017509044 Global-Ocean-Sampling_GS-30-02-01-1...    38   0.11   2
(EJ820847) 1093017537268 Global-Ocean-Sampling_GS-30-02-01-1...    38   0.11   2
(FN356886) Rhantus exsoletus mitochondrial DNA sequence cont...    38   0.15   3
(AC223748) Bos taurus clone CH240-458I1, WORKING DRAFT SEQUE...    48   0.54   1
(EJ027005) 1095454029528 Global-Ocean-Sampling_GS-26-01-01-1...    34   0.59   3
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   0.73   15
(DE019770) Branchiostoma floridae DNA, clone: CH302-032D21.F...    40   0.88   2
(AC204124) Xenopus (Silurana) tropicalis clone CH216-402E4, ...    42   1.1    2
(AC191615) Zea mays chromosome 4 clone CH201-319C7; ZMMBBc03...    44   1.2    3
(AC169170) Rhinolophus ferrumequinum clone VMRC7-338P21, WOR...    38   1.7    4
(AM474698) Vitis vinifera contig VV78X222079.10, whole genom...    46   2.1    1
(FP236509) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.1    1
(AC176174) Strongylocentrotus purpuratus clone R3-3066I3, WO...    46   2.1    1
(BH164065) ENTTO15TF Entamoeba histolytica Sheared DNA Entam...    46   2.1    1
(EK309583) 1095462392360 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.1    1
(EK119287) 1092963340615 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.1    1
(EK065712) 1092960119931 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.1    1
(ED693474) GM_WBb0031M04.f GM_WBb Glycine max genomic clone ...    46   2.1    1
(FH189613) CHO_OF3443xg09r1.ab1 CHO_OF3 Nicotiana tabacum ge...    36   2.4    2
(AE017263) Mesoplasma florum L1 complete genome.                   38   2.4    13
(ET790855) CHO_OF646xg20f1.ab1 CHO_OF Nicotiana tabacum geno...    36   2.6    2
(AP004140) Oryza sativa Japonica Group genomic DNA, chromoso...    42   2.8    2
(AC223962) Bos taurus clone CH240-453J18, WORKING DRAFT SEQU...    42   3.7    3
(AL157818) Human DNA sequence from clone RP11-464I2 on chrom...    40   3.9    3
(AC173512) Bos taurus clone CH240-301F21, WORKING DRAFT SEQU...    34   4.0    2
(AC222461) Bos taurus clone CH240-418O15, WORKING DRAFT SEQU...    34   4.1    2
(AC177223) Strongylocentrotus purpuratus clone R3-1034J01, W...    42   4.1    4
(CP000825) Prochlorococcus marinus str. MIT 9215, complete g...    34   4.3    16
(AC004957) Homo sapiens PAC clone RP5-1093O17 from 7, comple...    38   4.3    4
(AL672193) Mouse DNA sequence from clone RP23-443O18 on chro...    42   4.4    2
(ET904664) CHO_OF462xe18f3.ab1 CHO_OF Nicotiana tabacum geno...    36   4.4    2
(GE405868) 293795563 Nasonia vitripennis Female Pupae Nasoni...    40   4.9    2
(FP325273) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   4.9    3
(EJ699038) 1092956029382 Global-Ocean-Sampling_GS-30-02-01-1...    34   5.0    2
(ET904597) CHO_OF462xe18f2.ab1 CHO_OF Nicotiana tabacum geno...    36   5.2    2
(EJ450401) 1093015415543 Global-Ocean-Sampling_GS-28-01-01-1...    34   5.6    2
(CS789979) Sequence 1235 from Patent WO2005031001.                 40   5.9    3
(EJ806559) 1093017462880 Global-Ocean-Sampling_GS-30-02-01-1...    34   6.1    2
(EJ794827) 1093017395488 Global-Ocean-Sampling_GS-30-02-01-1...    34   6.2    2
(EJ653725) 1092954009860 Global-Ocean-Sampling_GS-30-02-01-1...    34   6.3    2
(EJ620904) 1092963061925 Global-Ocean-Sampling_GS-29-01-01-1...    34   6.6    2
(AC231931) Medicago truncatula chromosome 7 clone mth4-36h24...    42   6.6    6
(AC006340) Arabidopsis thaliana chromosome 2 clone T9I22 map...    38   6.9    5
(AC115604) Dictyostelium discoideum chromosome 2 map 4354771...    30   7.4    7
(FN369537) Schistosoma mansoni genome sequence supercontig S...    40   7.4    2
(AC004986) Homo sapiens PAC clone RP5-1166A24 from 7, comple...    36   7.8    7
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete...    36   8.4    16
(AC109609) Mus musculus strain C57BL/6J clone rp23-167h1 map...    44   8.4    1
(AC105305) Mus musculus strain C57BL/6J clone rp23-80n4 map ...    44   8.4    1
(AC093319) Mus musculus strain C57BL/6J chromosome 17 clone ...    44   8.4    1
(AC090656) Mus musculus strain C57BL/6J chromosome 17 clone ...    44   8.4    1
(FJ429369) Carica papaya clone 66N15, complete sequence.           44   8.4    1
(AC157645) Medicago truncatula clone mth2-70l21, complete se...    44   8.4    1
(D13973) Dictyostelium discoideum gene for Dp87 protein, com...    44   8.4    1
(AL590117) Human DNA sequence from clone RP11-547C6 on chrom...    44   8.4    1
(AC017087) Homo sapiens BAC clone RP11-495H13 from 4, comple...    44   8.4    1
(AC006339) Homo sapiens BAC clone CTA-257F18 from 7, complet...    44   8.4    1
(AC155620) Zea mays strain B73 clone ZMMBBc0352I21, *** SEQU...    44   8.4    1
(FP325239) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.4    1
(CU929893) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.4    1
(CU570714) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.4    1
(CU463187) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.4    1
(AC235672) Medicago truncatula clone mth2-94f19, WORKING DRA...    44   8.4    1
(AC235533) Zea mays chromosome 4 clone CH201-215H13; ZMMBBc0...    44   8.4    1
(AC226831) Medicago truncatula chromosome 2 clone mth2-64k18...    44   8.4    1
(AC226542) Zea mays chromosome 4 clone CH201-361G19; ZMMBBc0...    44   8.4    1
(AC217428) Zea mays chromosome 5 clone ZMMBBb-587D21; ZMMBBb...    44   8.4    1
(AC215235) Zea mays chromosome 9 clone CH201-48M7; ZMMBBc004...    44   8.4    1
(AC215229) Zea mays chromosome 9 clone CH201-54H11; ZMMBBc00...    44   8.4    1
(AC209730) Zea mays chromosome 3 clone CH201-142O11; ZMMBBc0...    44   8.4    1
(AC208618) Zea mays chromosome 2 clone CH201-172H24; ZMMBBc0...    44   8.4    1
(AC206684) Zea mays chromosome 10 clone CH201-255E24; ZMMBBc...    44   8.4    1
(AC204949) Zea mays chromosome 5 clone CH201-157L3; ZMMBBc01...    44   8.4    1
(AC204299) Zea mays chromosome 2 clone CH201-308G1; ZMMBBc03...    44   8.4    1
(AC202880) Zea mays chromosome 1 clone CH201-474J11; ZMMBBc0...    44   8.4    1
(AC201897) Zea mays chromosome unknown clone CH201-370A24; Z...    44   8.4    1
(AC200550) Zea mays chromosome 10 clone CH201-475J18; ZMMBBc...    44   8.4    1
(AC196491) Zea mays chromosome 1 clone CH201-120K6; ZMMBBc01...    44   8.4    1
(AC195061) Zea mays chromosome 1 clone CH201-117J22; ZMMBBc0...    44   8.4    1
(AC191325) Zea mays chromosome 2 clone CH201-265D18; ZMMBBc0...    44   8.4    1
(AC191303) Zea mays chromosome 1 clone CH201-79F7; ZMMBBc007...    44   8.4    1
(AC182422) Zea mays chromosome 3 clone CH201-60G15; ZMMBBc00...    44   8.4    1
(EJ935695) 1093018837394 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.4    1
(EJ923708) 1093018772862 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.4    1
(CC813378) ZMMBBc0512L02r ZMMBBc Zea mays subsp. mays genomi...    44   8.4    1
(CC148052) ZMMBBb0011P21.f ZMMBBb Zea mays subsp. mays genom...    44   8.4    1
(BH772823) uzmb001f001a05f0 uzmb unfiltered library Zea mays...    44   8.4    1
(EG317978) MSAM300902_2739_0026 LCM-dissected maize inbred l...    44   8.4    1
(EG222317) MSAM088027_3573_3926 LCM-dissected maize inbred l...    44   8.4    1
(EG155244) MSAM240701_0817_2641 LCM-dissected maize inbred l...    44   8.4    1
(DW887082) MSAM096616_2564_0451 LCM-dissected maize shoot ap...    44   8.4    1
(DW754916) MSAM094777_1160_3116 LCM-dissected maize shoot ap...    44   8.4    1
(CJ361602) Molgula tectiformis cDNA, cleaving embryo clone:m...    44   8.4    1
(CP001147) Thermodesulfovibrio yellowstonii DSM 11347, compl...    44   8.4    1
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    44   8.4    1
(AC011143) Homo sapiens chromosome 18, clone RP11-1O15, comp...    40   9.4    4

>(C89886) Dictyostelium discoideum slug cDNA, clone SSG580.
          Length = 658

 Score =  864 bits (436), Expect(4) = 0.0
 Identities = 436/436 (100%)
 Strand = Plus / Plus


Query: 153 cagatattaatattagcgcaccacatattgaattcccattagatttctctgcaagtaata 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cagatattaatattagcgcaccacatattgaattcccattagatttctctgcaagtaata 60


Query: 213 tgacattcaatattagtgttgaagctgaaacatttccaatcgctatgaaccttattgcaa 272
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgacattcaatattagtgttgaagctgaaacatttccaatcgctatgaaccttattgcaa 120


Query: 273 acaaaagtgatgttccaatttcattgggtatctatggtgctgatagtataccagtgactt 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acaaaagtgatgttccaatttcattgggtatctatggtgctgatagtataccagtgactt 180


Query: 333 taaacgttggtaaaatggaggcacctctattaaactatttcttctttgctatatttggtt 392
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taaacgttggtaaaatggaggcacctctattaaactatttcttctttgctatatttggtt 240


Query: 393 caataaatgggattttattaatttgggttatcattcaacaaatttgtattcaaaatttaa 452
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caataaatgggattttattaatttgggttatcattcaacaaatttgtattcaaaatttaa 300


Query: 453 agaaacgtttagatacaatcgatatttcaaatgatgtattaaaaggtaaaagatataaaa 512
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agaaacgtttagatacaatcgatatttcaaatgatgtattaaaaggtaaaagatataaaa 360


Query: 513 gaggaaatgtttggtataaatcaatcaactctgatgatgttacaagtgataatgaaattt 572
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaggaaatgtttggtataaatcaatcaactctgatgatgttacaagtgataatgaaattt 420


Query: 573 taaataatggtcgtag 588
           ||||||||||||||||
Sbjct: 421 taaataatggtcgtag 436

 Score =  196 bits (99), Expect(4) = 0.0
 Identities = 99/99 (100%)
 Strand = Plus / Plus


Query: 656 catgaatcaatcattaatatcaatatgtaaacaatgtggtcaaactaatggtaaaactaa 715
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 catgaatcaatcattaatatcaatatgtaaacaatgtggtcaaactaatggtaaaactaa 556


Query: 716 attttgttttgattgtggatctagtttaattaattagat 754
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 557 attttgttttgattgtggatctagtttaattaattagat 595

 Score = 46.1 bits (23), Expect(4) = 0.0
 Identities = 23/23 (100%)
 Strand = Plus / Plus


Query: 588 ggtcgtagttcaaatcgtgatca 610
           |||||||||||||||||||||||
Sbjct: 429 ggtcgtagttcaaatcgtgatca 451

 Score = 38.2 bits (19), Expect(4) = 0.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus


Query: 788 gatctagatctttaatttc 806
           |||||||||||||||||||
Sbjct: 629 gatctagatctttaatttc 647

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 1,022,969,768
Number of extensions: 63866001
Number of successful extensions: 5217671
Number of sequences better than 10.0: 101
Length of query: 806
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 782
Effective length of database: 102,084,959,077
Effective search space: 79830437998214
Effective search space used: 79830437998214
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 8. 1
Homology vs Protein 
Query= Contig-U05259-1 (Contig-U05259-1Q) /CSM_Contig/Contig-U05259-1Q.Seq.d
         (806 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR940352_142(CR940352|pid:none) Theileria annulata strain Ankara...    34   6.5
CP000559_1668(CP000559|pid:none) Methanocorpusculum labreanum Z,...    33   8.4

>CR940352_142(CR940352|pid:none) Theileria annulata strain Ankara
           isolate clone C9, *** SEQUENCING IN PROGRESS ***, 3
           ordered pieces.
          Length = 439

 Score = 33.9 bits (76), Expect = 6.5
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +1

Query: 1   PDSLSKLSSKFEPSSIVKDLVSDLPPFYFSFNVTNSSMTLPMNMTW 138
           P  L  + SK  P + +KDL  + P F  SFN+TN  +  P+N+ +
Sbjct: 256 PVILEFIESKCFPINSLKDLTKNSPSFSNSFNLTNLILDCPVNLNF 301

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,048,448,418
Number of extensions: 20035687
Number of successful extensions: 54241
Number of sequences better than 10.0: 2
Number of HSP's gapped: 54222
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 1,061,185,681
Length adjustment: 126
Effective length of query: 142
Effective length of database: 649,361,233
Effective search space: 92209295086
Effective search space used: 92209295086
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.23  top: 0.67  tms: 0.07  mit: 0.23  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.07  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U05259-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0