Contig-U05259-1 |
Contig ID |
Contig-U05259-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
no gap |
Contig length |
806 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
1337366 |
End point |
1338174 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U05259 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2009. 7.16 |
Homology vs DNA |
Query= Contig-U05259-1 (Contig-U05259-1Q) /CSM_Contig/Contig-U05259-1Q.Seq.d (806 letters)
Database: ddbj_B 105,743,758 sequences; 104,622,809,269 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(C89886) Dictyostelium discoideum slug cDNA, clone SSG580. 864 0.0 4 (AU073288) Dictyostelium discoideum slug cDNA, clone SSG580. 301 e-123 2 (AC120503) Didelphis virginiana clone LB3-158G23, WORKING DR... 52 0.035 1 (AC027303) Homo sapiens chromosome 5 clone CTB-100B21, WORKI... 38 0.082 3 (EJ814653) 1093017509044 Global-Ocean-Sampling_GS-30-02-01-1... 38 0.11 2 (EJ820847) 1093017537268 Global-Ocean-Sampling_GS-30-02-01-1... 38 0.11 2 (FN356886) Rhantus exsoletus mitochondrial DNA sequence cont... 38 0.15 3 (AC223748) Bos taurus clone CH240-458I1, WORKING DRAFT SEQUE... 48 0.54 1 (EJ027005) 1095454029528 Global-Ocean-Sampling_GS-26-01-01-1... 34 0.59 3 (CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 34 0.73 15 (DE019770) Branchiostoma floridae DNA, clone: CH302-032D21.F... 40 0.88 2 (AC204124) Xenopus (Silurana) tropicalis clone CH216-402E4, ... 42 1.1 2 (AC191615) Zea mays chromosome 4 clone CH201-319C7; ZMMBBc03... 44 1.2 3 (AC169170) Rhinolophus ferrumequinum clone VMRC7-338P21, WOR... 38 1.7 4 (AM474698) Vitis vinifera contig VV78X222079.10, whole genom... 46 2.1 1 (FP236509) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.1 1 (AC176174) Strongylocentrotus purpuratus clone R3-3066I3, WO... 46 2.1 1 (BH164065) ENTTO15TF Entamoeba histolytica Sheared DNA Entam... 46 2.1 1 (EK309583) 1095462392360 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.1 1 (EK119287) 1092963340615 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.1 1 (EK065712) 1092960119931 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.1 1 (ED693474) GM_WBb0031M04.f GM_WBb Glycine max genomic clone ... 46 2.1 1 (FH189613) CHO_OF3443xg09r1.ab1 CHO_OF3 Nicotiana tabacum ge... 36 2.4 2 (AE017263) Mesoplasma florum L1 complete genome. 38 2.4 13 (ET790855) CHO_OF646xg20f1.ab1 CHO_OF Nicotiana tabacum geno... 36 2.6 2 (AP004140) Oryza sativa Japonica Group genomic DNA, chromoso... 42 2.8 2 (AC223962) Bos taurus clone CH240-453J18, WORKING DRAFT SEQU... 42 3.7 3 (AL157818) Human DNA sequence from clone RP11-464I2 on chrom... 40 3.9 3 (AC173512) Bos taurus clone CH240-301F21, WORKING DRAFT SEQU... 34 4.0 2 (AC222461) Bos taurus clone CH240-418O15, WORKING DRAFT SEQU... 34 4.1 2 (AC177223) Strongylocentrotus purpuratus clone R3-1034J01, W... 42 4.1 4 (CP000825) Prochlorococcus marinus str. MIT 9215, complete g... 34 4.3 16 (AC004957) Homo sapiens PAC clone RP5-1093O17 from 7, comple... 38 4.3 4 (AL672193) Mouse DNA sequence from clone RP23-443O18 on chro... 42 4.4 2 (ET904664) CHO_OF462xe18f3.ab1 CHO_OF Nicotiana tabacum geno... 36 4.4 2 (GE405868) 293795563 Nasonia vitripennis Female Pupae Nasoni... 40 4.9 2 (FP325273) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 4.9 3 (EJ699038) 1092956029382 Global-Ocean-Sampling_GS-30-02-01-1... 34 5.0 2 (ET904597) CHO_OF462xe18f2.ab1 CHO_OF Nicotiana tabacum geno... 36 5.2 2 (EJ450401) 1093015415543 Global-Ocean-Sampling_GS-28-01-01-1... 34 5.6 2 (CS789979) Sequence 1235 from Patent WO2005031001. 40 5.9 3 (EJ806559) 1093017462880 Global-Ocean-Sampling_GS-30-02-01-1... 34 6.1 2 (EJ794827) 1093017395488 Global-Ocean-Sampling_GS-30-02-01-1... 34 6.2 2 (EJ653725) 1092954009860 Global-Ocean-Sampling_GS-30-02-01-1... 34 6.3 2 (EJ620904) 1092963061925 Global-Ocean-Sampling_GS-29-01-01-1... 34 6.6 2 (AC231931) Medicago truncatula chromosome 7 clone mth4-36h24... 42 6.6 6 (AC006340) Arabidopsis thaliana chromosome 2 clone T9I22 map... 38 6.9 5 (AC115604) Dictyostelium discoideum chromosome 2 map 4354771... 30 7.4 7 (FN369537) Schistosoma mansoni genome sequence supercontig S... 40 7.4 2 (AC004986) Homo sapiens PAC clone RP5-1166A24 from 7, comple... 36 7.8 7 (AE014187) Plasmodium falciparum 3D7 chromosome 14, complete... 36 8.4 16 (AC109609) Mus musculus strain C57BL/6J clone rp23-167h1 map... 44 8.4 1 (AC105305) Mus musculus strain C57BL/6J clone rp23-80n4 map ... 44 8.4 1 (AC093319) Mus musculus strain C57BL/6J chromosome 17 clone ... 44 8.4 1 (AC090656) Mus musculus strain C57BL/6J chromosome 17 clone ... 44 8.4 1 (FJ429369) Carica papaya clone 66N15, complete sequence. 44 8.4 1 (AC157645) Medicago truncatula clone mth2-70l21, complete se... 44 8.4 1 (D13973) Dictyostelium discoideum gene for Dp87 protein, com... 44 8.4 1 (AL590117) Human DNA sequence from clone RP11-547C6 on chrom... 44 8.4 1 (AC017087) Homo sapiens BAC clone RP11-495H13 from 4, comple... 44 8.4 1 (AC006339) Homo sapiens BAC clone CTA-257F18 from 7, complet... 44 8.4 1 (AC155620) Zea mays strain B73 clone ZMMBBc0352I21, *** SEQU... 44 8.4 1 (FP325239) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.4 1 (CU929893) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.4 1 (CU570714) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.4 1 (CU463187) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.4 1 (AC235672) Medicago truncatula clone mth2-94f19, WORKING DRA... 44 8.4 1 (AC235533) Zea mays chromosome 4 clone CH201-215H13; ZMMBBc0... 44 8.4 1 (AC226831) Medicago truncatula chromosome 2 clone mth2-64k18... 44 8.4 1 (AC226542) Zea mays chromosome 4 clone CH201-361G19; ZMMBBc0... 44 8.4 1 (AC217428) Zea mays chromosome 5 clone ZMMBBb-587D21; ZMMBBb... 44 8.4 1 (AC215235) Zea mays chromosome 9 clone CH201-48M7; ZMMBBc004... 44 8.4 1 (AC215229) Zea mays chromosome 9 clone CH201-54H11; ZMMBBc00... 44 8.4 1 (AC209730) Zea mays chromosome 3 clone CH201-142O11; ZMMBBc0... 44 8.4 1 (AC208618) Zea mays chromosome 2 clone CH201-172H24; ZMMBBc0... 44 8.4 1 (AC206684) Zea mays chromosome 10 clone CH201-255E24; ZMMBBc... 44 8.4 1 (AC204949) Zea mays chromosome 5 clone CH201-157L3; ZMMBBc01... 44 8.4 1 (AC204299) Zea mays chromosome 2 clone CH201-308G1; ZMMBBc03... 44 8.4 1 (AC202880) Zea mays chromosome 1 clone CH201-474J11; ZMMBBc0... 44 8.4 1 (AC201897) Zea mays chromosome unknown clone CH201-370A24; Z... 44 8.4 1 (AC200550) Zea mays chromosome 10 clone CH201-475J18; ZMMBBc... 44 8.4 1 (AC196491) Zea mays chromosome 1 clone CH201-120K6; ZMMBBc01... 44 8.4 1 (AC195061) Zea mays chromosome 1 clone CH201-117J22; ZMMBBc0... 44 8.4 1 (AC191325) Zea mays chromosome 2 clone CH201-265D18; ZMMBBc0... 44 8.4 1 (AC191303) Zea mays chromosome 1 clone CH201-79F7; ZMMBBc007... 44 8.4 1 (AC182422) Zea mays chromosome 3 clone CH201-60G15; ZMMBBc00... 44 8.4 1 (EJ935695) 1093018837394 Global-Ocean-Sampling_GS-30-02-01-1... 44 8.4 1 (EJ923708) 1093018772862 Global-Ocean-Sampling_GS-30-02-01-1... 44 8.4 1 (CC813378) ZMMBBc0512L02r ZMMBBc Zea mays subsp. mays genomi... 44 8.4 1 (CC148052) ZMMBBb0011P21.f ZMMBBb Zea mays subsp. mays genom... 44 8.4 1 (BH772823) uzmb001f001a05f0 uzmb unfiltered library Zea mays... 44 8.4 1 (EG317978) MSAM300902_2739_0026 LCM-dissected maize inbred l... 44 8.4 1 (EG222317) MSAM088027_3573_3926 LCM-dissected maize inbred l... 44 8.4 1 (EG155244) MSAM240701_0817_2641 LCM-dissected maize inbred l... 44 8.4 1 (DW887082) MSAM096616_2564_0451 LCM-dissected maize shoot ap... 44 8.4 1 (DW754916) MSAM094777_1160_3116 LCM-dissected maize shoot ap... 44 8.4 1 (CJ361602) Molgula tectiformis cDNA, cleaving embryo clone:m... 44 8.4 1 (CP001147) Thermodesulfovibrio yellowstonii DSM 11347, compl... 44 8.4 1 (AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 44 8.4 1 (AC011143) Homo sapiens chromosome 18, clone RP11-1O15, comp... 40 9.4 4
>(C89886) Dictyostelium discoideum slug cDNA, clone SSG580. Length = 658
Score = 864 bits (436), Expect(4) = 0.0 Identities = 436/436 (100%) Strand = Plus / Plus
Query: 153 cagatattaatattagcgcaccacatattgaattcccattagatttctctgcaagtaata 212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cagatattaatattagcgcaccacatattgaattcccattagatttctctgcaagtaata 60
Query: 213 tgacattcaatattagtgttgaagctgaaacatttccaatcgctatgaaccttattgcaa 272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tgacattcaatattagtgttgaagctgaaacatttccaatcgctatgaaccttattgcaa 120
Query: 273 acaaaagtgatgttccaatttcattgggtatctatggtgctgatagtataccagtgactt 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 acaaaagtgatgttccaatttcattgggtatctatggtgctgatagtataccagtgactt 180
Query: 333 taaacgttggtaaaatggaggcacctctattaaactatttcttctttgctatatttggtt 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 taaacgttggtaaaatggaggcacctctattaaactatttcttctttgctatatttggtt 240
Query: 393 caataaatgggattttattaatttgggttatcattcaacaaatttgtattcaaaatttaa 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 caataaatgggattttattaatttgggttatcattcaacaaatttgtattcaaaatttaa 300
Query: 453 agaaacgtttagatacaatcgatatttcaaatgatgtattaaaaggtaaaagatataaaa 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 agaaacgtttagatacaatcgatatttcaaatgatgtattaaaaggtaaaagatataaaa 360
Query: 513 gaggaaatgtttggtataaatcaatcaactctgatgatgttacaagtgataatgaaattt 572 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gaggaaatgtttggtataaatcaatcaactctgatgatgttacaagtgataatgaaattt 420
Query: 573 taaataatggtcgtag 588 |||||||||||||||| Sbjct: 421 taaataatggtcgtag 436
Score = 196 bits (99), Expect(4) = 0.0 Identities = 99/99 (100%) Strand = Plus / Plus
Query: 656 catgaatcaatcattaatatcaatatgtaaacaatgtggtcaaactaatggtaaaactaa 715 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 497 catgaatcaatcattaatatcaatatgtaaacaatgtggtcaaactaatggtaaaactaa 556
Query: 716 attttgttttgattgtggatctagtttaattaattagat 754 ||||||||||||||||||||||||||||||||||||||| Sbjct: 557 attttgttttgattgtggatctagtttaattaattagat 595
Score = 46.1 bits (23), Expect(4) = 0.0 Identities = 23/23 (100%) Strand = Plus / Plus
Query: 588 ggtcgtagttcaaatcgtgatca 610 ||||||||||||||||||||||| Sbjct: 429 ggtcgtagttcaaatcgtgatca 451
Score = 38.2 bits (19), Expect(4) = 0.0 Identities = 19/19 (100%) Strand = Plus / Plus
Query: 788 gatctagatctttaatttc 806 ||||||||||||||||||| Sbjct: 629 gatctagatctttaatttc 647
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 105743758 Number of Hits to DB: 1,022,969,768 Number of extensions: 63866001 Number of successful extensions: 5217671 Number of sequences better than 10.0: 101 Length of query: 806 Length of database: 104,622,809,269 Length adjustment: 24 Effective length of query: 782 Effective length of database: 102,084,959,077 Effective search space: 79830437998214 Effective search space used: 79830437998214 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 8. 1 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |