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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05250-1
Contig ID Contig-U05250-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U05250-1 (Contig-U05250-1Q) /CSM_Contig/Contig-U05250-1Q.Seq.d
ATTGCCACCATTTTAATATTAAAAAATAAATTTTATTATGACTAGTGTAA
GCAGTGATAGTAGAAAACAATTTAAAGGTTCAGGTGATCATGTATTTGAT
TTTGATAATAAAGAAAATCATGATTTCCTTTCATTAACAATAAAACAAGA
TAATAATAATAATAATAATAATAACACCAATGTTTCATTATCACCATCAA
TTAAAAGTCAAGCAACATCTTCCACTGGTGGTAATAAGAATCAAATATTT
TCACAAATGAGAGAATTAGATAAAAAATCATTAATGTTAATTGAAACTTA
TTATAGAGATAAATTAATAACTTATCAAGAAAAATTAAAAAGAGAATTAG
AACAAATATATAATAAAAAATTACAATCATTAAAAATTCAATATGATAGT
GATTCTTATTTAAAATTTAAACAATTTGAACTTGAAACTAAAAAAGCATT
ATTGTTACTATTAAAAGAATTCCAAGATTTAAAGAAATCAAAACAACAAC
AAGAAAAACAATTAAAATTACAACAAATTAAACAAGAGANTAATAATAAT
AATAATAATAATAATAATAATGATGATGACCAACAAAAAGATATAGATAA
TAGTAATGATATTGTTAATGATTTTAAAACAGATAAAATATTAAAAGAAA
AAGAAGAAATTTTAAATAAATTAGAATTAATAACGAAATCAATAACAGAT
TTATTTATTCAACAAGTTGATATCTCTACTGATACTATCGACTTTCAATC
TTTTTTATCAAATATTGTAGCAACGACGACAACAACAACTGCAACAATAT
CAAATTAA
Gap no gap
Contig length 808
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 3368965
End point 3369773
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05250
List of clone(s) 

est1=SSG519E,1,809
Translated Amino Acid sequence 
lppf*y*KINFIMTSVSSDSRKQFKGSGDHVFDFDNKENHDFLSLTIKQDNNNNNNNNTN
VSLSPSIKSQATSSTGGNKNQIFSQMRELDKKSLMLIETYYRDKLITYQEKLKRELEQIY
NKKLQSLKIQYDSDSYLKFKQFELETKKALLLLLKEFQDLKKSKQQQEKQLKLQQIKQEX
NNNNNNNNNNDDDQQKDIDNSNDIVNDFKTDKILKEKEEILNKLELITKSITDLFIQQVD
ISTDTIDFQSFLSNIVATTTTTTATISN*
Translated Amino Acid sequence (All Frames) 
Frame A:
iatililknkfyyd*ckq***kti*rfr*sci*f***rks*fpfinnktr********hq
cfiitin*kssnifhww**esniftnerir*kiinvn*nll*r*innlsrkikkrirtni
**kitiiknsi***flfki*ti*t*n*ksiivtikriprfkeiktttrktikittn*trx
*************ptkryr****yc**f*nr*nikrkrrnfk*irinneinnrfiysts*
yly*yyrlsiffikycsnddnnncnnikl


Frame B:
lppf*y*KINFIMTSVSSDSRKQFKGSGDHVFDFDNKENHDFLSLTIKQDNNNNNNNNTN
VSLSPSIKSQATSSTGGNKNQIFSQMRELDKKSLMLIETYYRDKLITYQEKLKRELEQIY
NKKLQSLKIQYDSDSYLKFKQFELETKKALLLLLKEFQDLKKSKQQQEKQLKLQQIKQEX
NNNNNNNNNNDDDQQKDIDNSNDIVNDFKTDKILKEKEEILNKLELITKSITDLFIQQVD
ISTDTIDFQSFLSNIVATTTTTTATISN*


Frame C:
chhfnikk*ill*lv*avivennlkvqvimyliliikkimisfh*q*nkiiiiiiiitpm
fhyhhqlkvkqhlplvvirikyfhk*en*iknh*c*lkliiein**likkn*ken*nkyi
iknynh*kfnmivili*nlnnlnlklkkhycyy*knski*rnqnnnkknn*nynklnkrx
iiiiiiiiimmmtnkki*iivmillmilkqiky*kkkkkf*in*n**rnq*qiylfnkli
sllilstfnlfyqil*qrrqqqlqqyqi
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05250-1 (Contig-U05250-1Q)
/CSM_Contig/Contig-U05250-1Q.Seq.d
         (808 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05250-1 (Contig-U05250-1Q) /CSM_Contig/Conti...   295  4e-80
Contig-U05920-1 (Contig-U05920-1Q) /CSM_Contig/Conti...    48  1e-05
Contig-U11579-1 (Contig-U11579-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U13515-1 (Contig-U13515-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U12144-1 (Contig-U12144-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U11770-1 (Contig-U11770-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U11282-1 (Contig-U11282-1Q) /CSM_Contig/Conti...    38  0.014
Contig-U10847-1 (Contig-U10847-1Q) /CSM_Contig/Conti...    38  0.014

>Contig-U05250-1 (Contig-U05250-1Q) /CSM_Contig/Contig-U05250-1Q.Seq.d
          Length = 808

 Score =  295 bits (149), Expect = 4e-80
 Identities = 149/149 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgccaccattttaatattaaaaaataaattttattatgactagtgtaagcagtgatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   attgccaccattttaatattaaaaaataaattttattatgactagtgtaagcagtgatag 60

                                                                       
Query: 61  tagaaaacaatttaaaggttcaggtgatcatgtatttgattttgataataaagaaaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tagaaaacaatttaaaggttcaggtgatcatgtatttgattttgataataaagaaaatca 120

                                        
Query: 121 tgatttcctttcattaacaataaaacaag 149
           |||||||||||||||||||||||||||||
Sbjct: 121 tgatttcctttcattaacaataaaacaag 149


 Score =  291 bits (147), Expect = 6e-79
 Identities = 147/147 (100%)
 Strand = Plus / Plus

                                                                       
Query: 175 caccaatgtttcattatcaccatcaattaaaagtcaagcaacatcttccactggtggtaa 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 caccaatgtttcattatcaccatcaattaaaagtcaagcaacatcttccactggtggtaa 234

                                                                       
Query: 235 taagaatcaaatattttcacaaatgagagaattagataaaaaatcattaatgttaattga 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 taagaatcaaatattttcacaaatgagagaattagataaaaaatcattaatgttaattga 294

                                      
Query: 295 aacttattatagagataaattaataac 321
           |||||||||||||||||||||||||||
Sbjct: 295 aacttattatagagataaattaataac 321


 Score =  236 bits (119), Expect = 3e-62
 Identities = 119/119 (100%)
 Strand = Plus / Plus

                                                                       
Query: 690 caataacagatttatttattcaacaagttgatatctctactgatactatcgactttcaat 749
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 caataacagatttatttattcaacaagttgatatctctactgatactatcgactttcaat 749

                                                                      
Query: 750 cttttttatcaaatattgtagcaacgacgacaacaacaactgcaacaatatcaaattaa 808
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 cttttttatcaaatattgtagcaacgacgacaacaacaactgcaacaatatcaaattaa 808


 Score =  190 bits (96), Expect = 2e-48
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                       
Query: 385 aattcaatatgatagtgattcttatttaaaatttaaacaatttgaacttgaaactaaaaa 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aattcaatatgatagtgattcttatttaaaatttaaacaatttgaacttgaaactaaaaa 444

                                               
Query: 445 agcattattgttactattaaaagaattccaagattt 480
           ||||||||||||||||||||||||||||||||||||
Sbjct: 445 agcattattgttactattaaaagaattccaagattt 480


 Score =  125 bits (63), Expect = 8e-29
 Identities = 63/63 (100%)
 Strand = Plus / Plus

                                                                       
Query: 572 gatgatgaccaacaaaaagatatagataatagtaatgatattgttaatgattttaaaaca 631
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gatgatgaccaacaaaaagatatagataatagtaatgatattgttaatgattttaaaaca 631

              
Query: 632 gat 634
           |||
Sbjct: 632 gat 634


>Contig-U05920-1 (Contig-U05920-1Q) /CSM_Contig/Contig-U05920-1Q.Seq.d
          Length = 601

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 250 ttcacaaatgagagaattagataa 273
           ||||||||||||||||||||||||
Sbjct: 218 ttcacaaatgagagaattagataa 241


>Contig-U11579-1 (Contig-U11579-1Q) /CSM_Contig/Contig-U11579-1Q.Seq.d
          Length = 1359

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 595  agataatagtaatgatattgttaatg 620
            ||||||||||||||||| ||||||||
Sbjct: 1257 agataatagtaatgatagtgttaatg 1282


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,153
Number of Sequences: 6905
Number of extensions: 24153
Number of successful extensions: 2471
Number of sequences better than 10.0: 398
length of query: 808
length of database: 5,674,871
effective HSP length: 16
effective length of query: 792
effective length of database: 5,564,391
effective search space: 4406997672
effective search space used: 4406997672
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7.16
Homology vs DNA 
Query= Contig-U05250-1 (Contig-U05250-1Q) /CSM_Contig/Contig-U05250-1Q.Seq.d
         (808 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU073260) Dictyostelium discoideum slug cDNA, clone SSG519.      295   e-108  2
(C90087) Dictyostelium discoideum slug cDNA, clone SSG519.        224   2e-72  2
(AC149127) Medicago truncatula clone mth2-108o17, complete s...    38   0.019  5
(AC210509) Populus trichocarpa clone POP050-I20, complete se...    52   0.035  1
(AL844509) Plasmodium falciparum 3D7 chromosome 13.                38   0.048  13
(AL121821) Human chromosome 14 DNA sequence BAC C-2298J14 of...    40   0.055  5
(CG666439) OST456499 Mus musculus 129Sv/Ev Mus musculus cDNA...    42   0.059  2
(CG666608) OST456863 Mus musculus 129Sv/Ev Mus musculus cDNA...    42   0.059  2
(AC213424) Populus trichocarpa clone POP043-F09, complete se...    42   0.099  6
(AC114265) Dictyostelium discoideum chromosome 2 map 4520461...    36   0.12   6
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    32   0.12   12
(FM965555) Glossina morsitans morsitans EST, clone GMsg20h03...    46   0.14   2
(AC131610) Rattus norvegicus clone CH230-152B19, *** SEQUENC...    50   0.14   1
(AC106396) Rattus norvegicus clone CH230-137A9, WORKING DRAF...    50   0.14   1
(AC091017) Homo sapiens chromosome 17 clone RP11-64A4 map 17...    50   0.14   1
(FH562877) CHO_OF4471xd02r1.ab1 CHO_OF4 Nicotiana tabacum ge...    50   0.14   1
(FH378109) CHO_OF4612xh24r1.ab1 CHO_OF4 Nicotiana tabacum ge...    50   0.14   1
(DB759189) Apis mellifera head cDNA, RIKEN full-length enric...    50   0.14   1
(CO029008) EST807392 Coccidioides posadasii spherule cDNA li...    50   0.14   1
(CU179663) Zebrafish DNA sequence from clone DKEY-197I9.           46   0.15   6
(AP001532) Homo sapiens genomic DNA, chromosome 18q22 clone:...    38   0.17   8
(AM473975) Vitis vinifera contig VV78X064050.9, whole genome...    38   0.17   4
(AX345977) Sequence 1048 from Patent WO0200928.                    36   0.17   4
(CP001357) Brachyspira hyodysenteriae WA1, complete genome.        34   0.20   17
(CP000361) Arcobacter butzleri RM4018, complete genome.            34   0.24   17
(AC215941) Populus trichocarpa clone POP050-B20, complete se...    44   0.26   7
(FM961625) Glossina morsitans morsitans EST, clone GMsg33a03...    46   0.37   2
(EY309430) CAWX21587.fwd CAWX Helobdella robusta Primary Ear...    44   0.38   2
(EY311506) CAWX23505.fwd CAWX Helobdella robusta Primary Ear...    44   0.42   2
(EI188335) DH__Ba0026A01.f DH__Ba Drosophila hydei genomic c...    38   0.43   2
(FN357883) Schistosoma mansoni genome sequence supercontig S...    38   0.44   7
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    34   0.47   10
(AM465456) Vitis vinifera contig VV78X167346.5, whole genome...    48   0.54   1
(AC209040) Populus trichocarpa clone POP050-H13, complete se...    48   0.54   1
(GP287423) Sequence 3 from patent US 7510835.                      48   0.54   1
(AC104641) Homo sapiens 3 BAC RP11-786O7 (Roswell Park Cance...    48   0.54   1
(AC158049) Bos taurus clone CH240-59C12, WORKING DRAFT SEQUE...    48   0.54   1
(AC026920) Homo sapiens chromosome 3 clone RP11-786O7 map 3,...    48   0.54   1
(AC178072) Strongylocentrotus purpuratus clone R3-3059I06, W...    48   0.54   1
(AC176980) Strongylocentrotus purpuratus clone R3-1103C23, W...    48   0.54   1
(ET064210) MUGQ_CH252P362L15T7_CP681_054 CHORI-252 Vervet Mo...    48   0.54   1
(DX667795) 1984516 VV02 Ustilago maydis genomic clone 803782...    48   0.54   1
(CZ542076) SRAA-aad42a01.g1 Strongyloides ratti whole genome...    48   0.54   1
(CR812970) GR0AAA37BD07FM1 INRA BAC Bos taurus genomic clone...    48   0.54   1
(AJ926228) Theileria annulata EST, clone tam013e02_q1k.            48   0.54   1
(C93172) Dictyostelium discoideum slug cDNA, clone SSM737.         48   0.54   1
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    32   0.59   8
(CS560530) Sequence 1 from Patent WO2007020617.                    40   0.70   7
(CP000234) Lactobacillus salivarius UCC118 plasmid pMP118, c...    40   0.70   7
(CP000976) Borrelia duttonii Ly, complete genome.                  32   0.72   14
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    36   0.78   9
(AC123899) Medicago truncatula clone mth2-33n6, complete seq...    36   0.84   8
(AC172953) Bos taurus clone CH240-275D15, WORKING DRAFT SEQU...    46   1.1    5
(AM483292) Vitis vinifera contig VV78X046949.18, whole genom...    34   1.1    3
(ER314822) 1092344131933 Global-Ocean-Sampling_GS-34-01-01-1...    38   1.3    2
(AC116921) Dictyostelium discoideum chromosome 2 map 4624505...    36   1.3    6
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105...    36   1.4    5
(BZ096895) CH230-144D11.TJB CHORI-230 Segment 1 Rattus norve...    40   1.5    2
(FI165871) MUGQ_CH252P425D05Sp6_CH0285_057 CHORI-252 Vervet ...    32   1.5    2
(BH269553) CH230-122H23.TJB CHORI-230 Segment 1 Rattus norve...    40   1.5    2
(ER878887) MUGQ_CH252P269D15Sp6_CN563_062 CHORI-252 Vervet M...    32   1.5    2
(FC525421) CBPB2151.fwd CBPB Thalassiosira pseudonana RNA fr...    34   1.5    2
(FM166420) Oryzias latipes EST, clone M064--A12_096.               34   1.5    2
(ET017069) MUGQ_CH252P322G07T7_CP602_026 CHORI-252 Vervet Mo...    32   1.5    2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    34   1.5    11
(DU909948) 335972 Tomato EcoRI BAC Library Solanum lycopersi...    44   1.6    2
(CR847929) Zebrafish DNA sequence from clone DKEY-70O1 in li...    38   1.6    6
(AC150014) Atelerix albiventris clone LB4-30P7, WORKING DRAF...    42   1.6    7
(AR551319) Sequence 6450 from patent US 6747137.                   34   1.7    4
(EJ080035) 1095460014851 Global-Ocean-Sampling_GS-26-01-01-1...    42   1.7    2
(EY328831) CAWY1879.fwd CAWY Helobdella robusta Subtracted E...    40   1.7    2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    38   1.8    9
(EC264960) 533940 MN08 Drosophila melanogaster cDNA clone 29...    36   1.9    2
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...    46   1.9    5
(AM482888) Vitis vinifera, whole genome shotgun sequence, co...    44   1.9    2
(CR931777) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   2.1    4
(CR848671) Zebrafish DNA sequence from clone CH211-274P22 in...    46   2.1    1
(BX001037) Zebrafish DNA sequence from clone DKEY-107I16 in ...    46   2.1    1
(AC132941) Mus musculus chromosome 18, clone RP23-163E22, co...    46   2.1    1
(AC196453) Rhesus Macaque  BAC CH250-87D11 () complete seque...    46   2.1    1
(AC190296) Rhesus Macaque  BAC CH250-120D8 () complete seque...    46   2.1    1
(CU570677) M.truncatula DNA sequence from clone MTH2-168J7 o...    46   2.1    1
(CT573029) M.truncatula DNA sequence from clone MTH2-67H11 o...    46   2.1    1
(AY359286) Fagopyrum esculentum clone gFeleg51 13S globulin ...    46   2.1    1
(AM489370) Vitis vinifera contig VV78X005196.13, whole genom...    46   2.1    1
(AM431506) Vitis vinifera contig VV78X028816.13, whole genom...    46   2.1    1
(AC235752) Medicago truncatula clone mth2-93d23, complete se...    46   2.1    1
(AC150440) Medicago truncatula chromosome 7 clone mth2-189e2...    46   2.1    1
(AC146562) Medicago truncatula clone mth2-14d10, complete se...    46   2.1    1
(AC146331) Medicago truncatula clone mth2-7h18, complete seq...    46   2.1    1
(AC142498) Medicago truncatula clone mth2-24a18, complete se...    46   2.1    1
(DJ387410) Diagnosis of Diseases Associated with Apoptosis.        46   2.1    1
(AX346327) Sequence 1398 from Patent WO0200928.                    46   2.1    1
(AX281318) Sequence 60 from Patent WO0177164.                      46   2.1    1
(CU463005) Pig DNA sequence from clone CH242-411O22 on chrom...    46   2.1    1
(AF068718) Caenorhabditis elegans cosmid R01B10, complete se...    46   2.1    1
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    46   2.1    1
(AC103710) Homo sapiens chromosome 11, clone CTD-2379P15, co...    46   2.1    1
(AC011711) Homo sapiens chromosome 11, clone RP11-309J20, co...    46   2.1    1
(AC162675) Bos taurus clone CH240-116A2, WORKING DRAFT SEQUE...    46   2.1    1
(AC153037) Bos taurus clone CH240-23J15, WORKING DRAFT SEQUE...    46   2.1    1
(AC152860) Felis catus clone RP86-311A19, WORKING DRAFT SEQU...    46   2.1    1
(AC115984) Homo sapiens chromosome 11 clone CTC-775N13 map 1...    46   2.1    1
(AC102265) Mus musculus chromosome 18 clone RP24-244L12 map ...    46   2.1    1
(AC094233) Rattus norvegicus clone CH230-3B21, *** SEQUENCIN...    46   2.1    1
(CU280744) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   2.1    1
(CR450732) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   2.1    1
(AC233783) Medicago truncatula clone mth2-23j1, WORKING DRAF...    46   2.1    1
(AC202032) Zea mays chromosome 7 clone CH201-180K11; ZMMBBc0...    46   2.1    1
(AC189911) Nomascus leucogenys leucogenys clone CH271-358H6,...    46   2.1    1
(AC185790) Bos taurus clone RP42-252G24, WORKING DRAFT SEQUE...    46   2.1    1
(AC176805) Strongylocentrotus purpuratus clone R3-3109E14, W...    46   2.1    1
(AZ164254) SP_0075_B1_D02_T7A Strongylocentrotus purpuratus,...    46   2.1    1
(EJ545095) 1092956081661 Global-Ocean-Sampling_GS-29-01-01-1...    46   2.1    1
(EJ527777) 1092955198334 Global-Ocean-Sampling_GS-29-01-01-1...    46   2.1    1
(ED526785) KBrB116E18R KBrB, Brassica rapa BamHI BAC library...    46   2.1    1
(CZ547088) SRAA-aad71g06.g1 Strongyloides ratti whole genome...    46   2.1    1
(BH794502) ME_MBa0002P20r Manihot esculenta Manihot esculent...    46   2.1    1
(BH603466) BOHFR93TF BOHF Brassica oleracea genomic clone BO...    46   2.1    1
(EC826414) SME00001730 esmbsro2 Sawyeria marylandensis cDNA,...    46   2.1    1
(BQ995389) QGF9N21.yg.ab1 QG_EFGHJ lettuce serriola Lactuca ...    46   2.1    1
(BQ995038) QGF8O03.yg.ab1 QG_EFGHJ lettuce serriola Lactuca ...    46   2.1    1
(BQ994541) QGF7I07.yg.ab1 QG_EFGHJ lettuce serriola Lactuca ...    46   2.1    1
(BQ994177) QGF6I08.yg.ab1 QG_EFGHJ lettuce serriola Lactuca ...    46   2.1    1
(BQ993574) QGF4e10.yg.ab1 QG_EFGHJ lettuce serriola Lactuca ...    46   2.1    1
(BQ993437) QGF3a03.yg.ab1 QG_EFGHJ lettuce serriola Lactuca ...    46   2.1    1
(BQ992084) QGF24K14.yg.ab1 QG_EFGHJ lettuce serriola Lactuca...    46   2.1    1
(BQ991717) QGF23J24.yg.ab1 QG_EFGHJ lettuce serriola Lactuca...    46   2.1    1
(BQ990235) QGF19N08.yg.ab1 QG_EFGHJ lettuce serriola Lactuca...    46   2.1    1
(BQ989649) QGF18E02.yg.ab1 QG_EFGHJ lettuce serriola Lactuca...    46   2.1    1
(BQ988795) QGF15O03.yg.ab1 QG_EFGHJ lettuce serriola Lactuca...    46   2.1    1
(BQ988486) QGF15A22.yg.ab1 QG_EFGHJ lettuce serriola Lactuca...    46   2.1    1
(BQ986937) QGF10N14.yg.ab1 QG_EFGHJ lettuce serriola Lactuca...    46   2.1    1
(BQ986791) QGF10H09.yg.ab1 QG_EFGHJ lettuce serriola Lactuca...    46   2.1    1
(BM058547) 2193-59 hindgut and Malpighian tubule subtracted ...    46   2.1    1
(GO295606) CAZC3106.rev CAZC Teleopsis dalmanni Mid-pupal ey...    46   2.1    1
(GO295523) CAZC3046.rev CAZC Teleopsis dalmanni Mid-pupal ey...    46   2.1    1
(GD186388) PUC-97 Aphid Immune Substracted library Acyrthosi...    46   2.1    1
(AW963980) EST376053 MAGE resequences, MAGH Homo sapiens cDN...    46   2.1    1
(FF309003) 279373484 Pea aphid whole body normalized full le...    46   2.1    1
(FF300258) 279336452 Pea aphid whole body normalized full le...    46   2.1    1
(FF299851) 279331172 Pea aphid whole body normalized full le...    46   2.1    1
(EY062607) CATF721.rev CATF Artemisia annua, Tanzanian, from...    46   2.1    1
(CP000107) Ehrlichia canis str. Jake, complete genome.             46   2.1    1
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    46   2.1    1
(DX547193) GH_MBb0044A05f GH_MBb Gossypium hirsutum genomic ...    42   2.2    2
(DE495118) Bombyx mori genomic DNA, Fosmid clone:GBMFno104_d...    42   2.2    2
(AC236161) Glycine max strain Williams 82 clone GM_WBb0059D2...    42   2.2    8
(AC190496) Zea mays chromosome 2 clone CH201-312N7; ZMMBBc03...    42   2.3    4
(AC168149) Medicago truncatula clone mth2-84g4, complete seq...    38   2.3    6
(AC231930) Medicago truncatula chromosome 7 clone mth2-83m21...    40   2.3    3
(AC147039) Pan troglodytes BAC clone RP43-117G22 from chromo...    34   2.4    6
(AC202376) Medicago truncatula clone mth2-97e21, complete se...    40   2.4    4
(AC147007) Medicago truncatula clone mth2-26c3, complete seq...    36   2.5    7
(AC124378) Mus musculus BAC clone RP24-397F8 from chromosome...    42   2.5    3
(BD061520) Genome DNA of symbiotic bacteria of aphid.              32   2.5    12
(AR409405) Sequence 1 from patent US 6632935.                      32   2.5    12
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum...    32   2.5    12
(DQ232349) Cotesia flavipes from Jamaica 16S ribosomal RNA g...    38   2.5    2
(CP001158) Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisu...    32   2.6    12
(CP001161) Buchnera aphidicola str. 5A (Acyrthosiphon pisum)...    32   2.6    12
(AC204246) Macaca mulatta clone CH250-459I16, WORKING DRAFT ...    36   2.6    4
(CZ519865) GMW2-80H17a.b1 GMW2 Glycine max genomic, genomic ...    34   2.6    3
(AC174363) Medicago truncatula chromosome 8 clone mth2-41c1,...    42   2.7    2
(AC115606) Dictyostelium discoideum chromosome 2 map 159760-...    38   2.7    5
(EU677193) Oedogonium cardiacum strain SAG 575-1b chloroplas...    38   2.8    8
(CU856492) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   3.2    3
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    44   3.3    11
(AC179429) Strongylocentrotus purpuratus clone R3-1040O12, W...    38   3.3    4
(CU019633) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   3.4    9
(AC201988) Zea mays chromosome unknown clone CH201-494O22; Z...    40   3.7    2
(AC135864) Oryza sativa Japonica Group chromosome 11 clone O...    40   3.8    2
(FF610706) G825P5155FF2.T0 Acorn worm normalized gastrula pE...    38   4.0    2
(AC214035) Populus trichocarpa clone POP073-O07, complete se...    32   4.0    6
(AC006528) Arabidopsis thaliana chromosome 2 clone F9B22 map...    36   4.1    4
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   4.1    12
(EY623869) CAWW18220.fwd CAWW Capitella sp. I ECS-2004 Subtr...    42   4.2    2
(EY648426) CAWW9425.rev CAWW Capitella sp. I ECS-2004 Subtra...    42   4.2    2
(EY623868) CAWW18220.rev CAWW Capitella sp. I ECS-2004 Subtr...    42   4.2    2
(EY616681) CAWW1379.rev CAWW Capitella sp. I ECS-2004 Subtra...    42   4.2    2
(EY648427) CAWW9425.fwd CAWW Capitella sp. I ECS-2004 Subtra...    42   4.4    2
(EY616682) CAWW1379.fwd CAWW Capitella sp. I ECS-2004 Subtra...    42   4.4    2
(BZ022398) oei38d11.b1 B.oleracea002 Brassica oleracea genom...    42   4.5    2
(AC122264) Mus musculus BAC clone RP23-197G20 from chromosom...    42   4.5    3
(EJ371627) 1092963726337 Global-Ocean-Sampling_GS-28-01-01-1...    38   4.6    2
(FF304944) 279360830 Pea aphid whole body normalized full le...    38   4.6    2
(AC113305) Mus musculus chromosome 10, clone RP23-433H22, co...    44   4.7    3
(EI358018) GM_WBc0110C06.r GM_WBc Glycine max genomic clone ...    36   4.7    2
(CP000993) Borrelia recurrentis A1, complete genome.               32   4.7    14
(AC170707) Atelerix albiventris clone LB4-208I1, WORKING DRA...    32   4.7    6
(AL583808) Human DNA sequence from clone RP11-262K1 on chrom...    42   4.8    5
(AC146425) Pan troglodytes chromosome 7 clone RP43-24M24, WO...    36   4.9    4
(EX613202) 255383414 Pea aphid whole body normalized full le...    38   5.0    2
(FF317317) 280387631 Pea aphid whole body normalized full le...    32   5.0    3
(FF325799) 280426860 Pea aphid whole body normalized full le...    38   5.1    2
(CE731253) tigr-gss-dog-17000329839478 Dog Library Canis lup...    36   5.1    3
(CZ728522) OC__Ba0056I10.f OC__Ba Oryza coarctata genomic cl...    36   5.2    2
(FN264834) Trypanosoma congolense isolate IL3000 EST read TC...    32   5.4    2
(CC815124) ZMMBBc0520F18f ZMMBBc Zea mays subsp. mays genomi...    42   5.4    2
(EI033261) hgz0006af10.b1 hgz Oryza alta genomic clone hgz00...    32   5.5    2
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    38   5.5    5
(AC196765) Medicago truncatula chromosome 7 clone mth2-83f5,...    40   5.9    3
(AC169666) Medicago truncatula chromosome 7 BAC clone mth2-6...    42   5.9    3
(EK081160) 1092961105535 Global-Ocean-Sampling_GS-31-01-01-1...    42   6.1    2
(AM457456) Vitis vinifera contig VV78X208149.7, whole genome...    38   6.2    3
(FH848050) OSB_1264004xj06f1.ab1 OSB_1264 Nicotiana tabacum ...    32   6.2    3
(AX392734) Sequence 24 from Patent WO0212526.                      32   6.2    6
(AR707081) Sequence 24 from patent US 6933145.                     32   6.2    6
(CU928383) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   6.3    6
(FG285709) 1108770702543 New World Screwworm Egg 9261 ESTs C...    38   6.4    2
(BX663528) Zebrafish DNA sequence from clone DKEYP-47F9 in l...    38   6.6    5
(AY270152) Peanut witches'-broom phytoplasma plasmid pPNWB, ...    40   6.7    2
(U30821) Cyanophora paradoxa cyanelle, complete genome.            42   6.7    5
(AM637113) Entamoeba dispar GSS, clone dispar43b06.q1k.            34   6.9    3
(AM453270) Vitis vinifera contig VV78X030002.9, whole genome...    40   7.0    2
(AC236211) Glycine max strain Williams 82 clone GM_WBc0013K1...    34   7.1    8
(AM100925) Lutzomyia longipalpis EST clone NSFM-32c04, seque...    30   7.1    3
(EI900470) VUH2-24M20TR VUUBBa (VUH2) Vigna unguiculata geno...    36   7.2    3
(CP000716) Thermosipho melanesiensis BI429, complete genome.       34   7.4    17
(AC175797) Atelerix albiventris clone LB4-357F21, WORKING DR...    36   7.4    5
(CU468094) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   7.6    5
(EJ679940) 1092955120356 Global-Ocean-Sampling_GS-30-02-01-1...    36   7.8    3
(DX539473) GH_MBb0072G03r GH_MBb Gossypium hirsutum genomic ...    36   7.8    2
(BK006337) TPA_exp: Drosophila persimilis mitochondrion, com...    40   7.9    3
(BH472992) BOGNZ12TR BOGN Brassica oleracea genomic clone BO...    32   7.9    3
(AM459149) Vitis vinifera contig VV78X121274.3, whole genome...    42   8.1    2
(DX537753) GH_MBb0039M17f GH_MBb Gossypium hirsutum genomic ...    36   8.1    2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    32   8.2    14
(CT998541) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.5    4
(BX005282) Zebrafish DNA sequence from clone DKEY-37M22 in l...    44   8.5    1
(AY563626) Hyla andina voucher MACN 37891 12S ribosomal RNA ...    44   8.5    1
(AY549318) Hyla andina voucher MACN 37639 12S ribosomal RNA ...    44   8.5    1
(BV855417) pRRL2:Newb:20080411:238855 USMARC Pig Breed SNP D...    44   8.5    1
(BV022059) S212P6352FG3.T0 CZECHII/Ei Mus musculus STS genom...    44   8.5    1
(AL831777) Mouse DNA sequence from clone RP23-465E7 on chrom...    44   8.5    1
(AC159476) Mus musculus 10 BAC RP23-53O16 (Roswell Park Canc...    44   8.5    1
(AC158522) Mus musculus BAC clone RP23-400N21 from chromosom...    44   8.5    1
(AC156026) Mus musculus BAC clone RP23-74O4 from chromosome ...    44   8.5    1
(AC107234) Mus musculus chromosome 10, clone RP23-195B22, co...    44   8.5    1
(AC215276) MACACA MULATTA BAC clone CH250-135H3 from chromos...    44   8.5    1
(AC187292) Pongo abelii BAC clone CH276-25H12 from chromosom...    44   8.5    1
(EF494740) Blastocystis sp. NandII mitochondrion, complete g...    44   8.5    1
(CT963106) Medicago truncatula chromosome 5 clone mth2-64o22...    44   8.5    1
(CT573508) Medicago truncatula chromosome 5 clone mth2-29p15...    44   8.5    1
(AP005672) Physcomitrella patens subsp. patens chloroplast D...    44   8.5    1
(AM487329) Vitis vinifera contig VV78X239101.1, whole genome...    44   8.5    1
(AM484393) Vitis vinifera contig VV79X006724.2, whole genome...    44   8.5    1
(AM473287) Vitis vinifera contig VV79X001558.1, whole genome...    44   8.5    1
(AM439453) Vitis vinifera contig VV78X076013.10, whole genom...    44   8.5    1
(AC235326) Glycine max strain Williams 82 clone GM_WBb0080M0...    44   8.5    1
(AC216914) Populus trichocarpa clone POP036-E01, complete se...    44   8.5    1
(AC216766) Populus trichocarpa clone POP029-O12, complete se...    44   8.5    1
(AC209103) Populus trichocarpa clone POP056-L16, complete se...    44   8.5    1
(AC208939) Populus trichocarpa clone JGIACSB1085-H15, comple...    44   8.5    1
(AC189549) Brassica rapa subsp. pekinensis clone KBrH005C21,...    44   8.5    1
(AC189258) Brassica rapa subsp. pekinensis clone KBrB021J09,...    44   8.5    1
(AC189255) Brassica rapa subsp. pekinensis clone KBrB019O20,...    44   8.5    1
(AC172887) Brassica rapa subsp. pekinensis clone KBrS004B22,...    44   8.5    1
(AC149427) Populus trichocarpa clone Pop1-065A01, complete s...    44   8.5    1
(AC006283) Arabidopsis thaliana chromosome 2 clone T1B3 map ...    44   8.5    1
(AB025615) Arabidopsis thaliana genomic DNA, chromosome 3, T...    44   8.5    1
(AX349056) Sequence 514 from Patent WO0202807.                     44   8.5    1
(AX346308) Sequence 1379 from Patent WO0200928.                    44   8.5    1
(AX344537) Sequence 384 from Patent WO0200926.                     44   8.5    1
(CU407287) Pig DNA sequence from clone CH242-512G20 on chrom...    44   8.5    1
(AY044195) Fornicia sp. 'J.B. Whitfield' 16S large subunit r...    44   8.5    1
(AL844507) Plasmodium falciparum 3D7 chromosome 8.                 44   8.5    1
(AJ841326) Chrysomelinae sp. BMNH#704395 mitochondrial parti...    44   8.5    1
(AJ438726) Agriopis marginaria mitochondrion nd1 gene (parti...    44   8.5    1
(AF066930) Vespa tropica 16S ribosomal RNA gene, mitochondri...    44   8.5    1
(AF066906) Vespa crabro 16S ribosomal RNA gene, mitochondria...    44   8.5    1
(AB265382) Biston robustus gene for 16S rRNA, partial sequence.    44   8.5    1
(AL513303) Human DNA sequence from clone RP11-464C19 on chro...    44   8.5    1
(AL035681) Human DNA sequence from clone RP4-756G23 on chrom...    44   8.5    1
(AK129740) Homo sapiens cDNA FLJ26229 fis, clone ADG08955.         44   8.5    1
(AC140484) Homo sapiens BAC clone RP11-806A6 from 4, complet...    44   8.5    1
(AC133140) Homo sapiens chromosome 3 clone RP11-91E8, comple...    44   8.5    1
(AC079340) Homo sapiens BAC clone RP11-18H21 from 4, complet...    44   8.5    1
(AC074378) Homo sapiens BAC clone RP11-4I17 from 4, complete...    44   8.5    1
(AC158732) Rhinolophus ferrumequinum clone VMRC7-33G17, WORK...    44   8.5    1
(AC155209) Macropus eugenii clone ME_KBa-151B6, WORKING DRAF...    44   8.5    1
(AC148722) Ictalurus punctatus clone CH212-66C18, WORKING DR...    44   8.5    1
(AC138898) Homo sapiens chromosome 5 clone RP11-4I17, WORKIN...    44   8.5    1
(AC134936) Rattus norvegicus clone CH230-226E4, *** SEQUENCI...    44   8.5    1
(AC120701) Rattus norvegicus clone CH230-65H6, WORKING DRAFT...    44   8.5    1
(AC111299) Rattus norvegicus clone CH230-225G21, WORKING DRA...    44   8.5    1
(FP325103) Brassica rapa subsp. pekinensis clone KBrB124I21,...    44   8.5    1
(FP236304) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.5    1
(CU929995) Brassica rapa subsp. pekinensis clone KBrB084M10,...    44   8.5    1
(CU928706) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.5    1
(CU861939) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.5    1
(CU856685) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.5    1
(CU855873) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.5    1
(CU694837) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.5    1
(CU638862) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.5    1
(CU468558) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.5    1
(CU234153) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.5    1
(CU062548) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.5    1
(AJ312687) Homo sapiens genomic sequence from 3p21.3 in 23 o...    44   8.5    1
(AC234740) Brassica rapa subsp. pekinensis clone KBrH014J09,...    44   8.5    1
(AC232453) Brassica rapa subsp. pekinensis clone KBrB017O23,...    44   8.5    1
(AC196925) Rhinolophus ferrumequinum clone VMRC7-380F7, WORK...    44   8.5    1
(AC189226) Brassica rapa subsp. pekinensis clone KBrB012F17,...    44   8.5    1
(AC184964) Bos taurus clone CH240-282E5, WORKING DRAFT SEQUE...    44   8.5    1
(AC183716) Atelerix albiventris clone LB4-341F7, WORKING DRA...    44   8.5    1
(AC181304) Strongylocentrotus purpuratus clone R3-4017E06, W...    44   8.5    1
(AC180312) Strongylocentrotus purpuratus clone R3-3118O7, WO...    44   8.5    1
(AC178345) Strongylocentrotus purpuratus clone R3-3105E17, W...    44   8.5    1
(AC178342) Strongylocentrotus purpuratus clone R3-3105C12, W...    44   8.5    1
(AC173737) Strongylocentrotus purpuratus clone R3-3001N2, WO...    44   8.5    1
(AC172198) Bos taurus clone CH240-494E24, WORKING DRAFT SEQU...    44   8.5    1
(AC170092) Bos taurus clone CH240-261F12, WORKING DRAFT SEQU...    44   8.5    1
(AC169359) Bos taurus clone CH240-236I5, WORKING DRAFT SEQUE...    44   8.5    1
(AZ540728) ENTDA65TR Entamoeba histolytica Sheared DNA Entam...    44   8.5    1
(AZ439638) 1M0230D22F Mouse 10kb plasmid UUGC1M library Mus ...    44   8.5    1
(AZ250239) RPCI-23-41L16.TJ RPCI-23 Mus musculus genomic clo...    44   8.5    1
(AQ935087) CpG2329B CpIOWAgDNA1 Cryptosporidium parvum genom...    44   8.5    1
(AQ855989) CpG1448B CpIOWAgDNA1 Cryptosporidium parvum genom...    44   8.5    1
(AQ855051) CpG2078A CpIOWAgDNA1 Cryptosporidium parvum genom...    44   8.5    1
(AQ449872) 500005D06.x1 CpIOWAM13mp18gDNA1 Cryptosporidium p...    44   8.5    1
(FI213980) CccaBa061-C1TR CccABa Cajanus cajan genomic clone...    44   8.5    1
(FI004019) CHO_OF6895xa22f1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   8.5    1
(FH747984) CHO_OF5016xh16f1.ab1 CHO_OF5 Nicotiana tabacum ge...    44   8.5    1
(FH540758) CHO_OF4744xk23f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   8.5    1
(FH508357) CHO_OF4178xj05f1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   8.5    1
(FH452992) CHO_OF4721xc07r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   8.5    1
(FH191723) CHO_OF3020xf23r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   8.5    1
(ET990119) CHO_OF757xd11f1.ab1 CHO_OF Nicotiana tabacum geno...    44   8.5    1
(ER490844) 1093015324508 Global-Ocean-Sampling_GS-35-01-01-1...    44   8.5    1
(EK113989) 1092963161618 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.5    1
(AQ116343) RPCI11-54B3.TK.1 RPCI-11 Homo sapiens genomic clo...    44   8.5    1
(AM644808) Entamoeba moshkovskii FIC GSS, clone mosh016e02.p1k.    44   8.5    1
(EJ716489) 1092959422422 Global-Ocean-Sampling_GS-30-02-01-1...    44   8.5    1
(EJ509275) 1095407049925 Global-Ocean-Sampling_GS-28-01-01-1...    44   8.5    1
(EJ418261) 1093012203291 Global-Ocean-Sampling_GS-28-01-01-1...    44   8.5    1
(EJ280651) 1095366052531 Global-Ocean-Sampling_GS-27-01-01-1...    44   8.5    1
(EI915851) VUH2-47N12TV VUUBBa (VUH2) Vigna unguiculata geno...    44   8.5    1
(ED742686) GM_WBb0105F09.f GM_WBb Glycine max genomic clone ...    44   8.5    1
(ED521707) KBrB109E10R KBrB, Brassica rapa BamHI BAC library...    44   8.5    1
(DX539555) GH_MBb0039H01r GH_MBb Gossypium hirsutum genomic ...    44   8.5    1
(CT526662) A BAC library has been constructed from cultivar ...    44   8.5    1
(CT342384) Sus scrofa genomic clone CH242-10J17, genomic sur...    44   8.5    1
(CT209459) Sus scrofa genomic clone CH242-281I12, genomic su...    44   8.5    1
(CT166161) Sus scrofa genomic clone CH242-133K11, genomic su...    44   8.5    1
(AG545644) Mus musculus molossinus DNA, clone:MSMg01-460D20....    44   8.5    1
(CC187100) CH261-7N3_RM1.1 CH261 Gallus gallus genomic clone...    44   8.5    1
(EG028675) AH1144 Shanyou 523 Peanut Cotyledon cDNA Library ...    44   8.5    1
(EG028672) AH1143 Shanyou 523 Peanut Cotyledon cDNA Library ...    44   8.5    1
(EC986143) WIN1126.C21_N19 Muscat Hamburg pre-veraison berry...    44   8.5    1
(EC641976) BHE00001891 Blastocystis hominis In-House Non-nor...    44   8.5    1
(EC325692) GUTF089620H22 POSSUM_01-POSSUM-GUT-2KB Trichosuru...    44   8.5    1
(EC311776) OVARYF093336P23 POSSUM_01-POSSUM-C-OVARY-2KB Tric...    44   8.5    1
(EB584883) AGENCOURT_51928389 D. ananassae EST Drosophila an...    44   8.5    1
(EB576283) AGENCOURT_51387895 D. ananassae EST Drosophila an...    44   8.5    1
(DY595692) KIDNEYF074982N15 POSSUM_01-POSSUM-KIDNEY-2KB Tric...    44   8.5    1
(DR580343) WS00754.C21_I14 WS-PS-N-A-8 Picea glauca cDNA clo...    44   8.5    1
(DR522051) WS02710.C21_K19 SS-IL-A-FL-14 Picea sitchensis cD...    44   8.5    1
(DR517516) WS02746.CR_J07 SS-IL-A-FL-14 Picea sitchensis cDN...    44   8.5    1
(DR504355) WS02710.CR_K19 SS-IL-A-FL-14 Picea sitchensis cDN...    44   8.5    1
(CD516389) AGENCOURT_14369185 NIH_MGC_181 Homo sapiens cDNA ...    44   8.5    1
(AA795243) vv33c01.r1 Stratagene mouse heart (#937316) Mus m...    44   8.5    1
(BF297550) 053PbC01 Pb cDNA #17, Tommaso Pace, Marta Ponzi, ...    44   8.5    1
(BF229753) RC2-CS0017-270900-014-h06 CS0017 Homo sapiens cDN...    44   8.5    1
(GE368925) 292298216 Nasonia vitripennis Male Pupae Nasonia ...    44   8.5    1
(GE363206) 292286934 Nasonia vitripennis Male Pupae Nasonia ...    44   8.5    1
(GE362839) 292286991 Nasonia vitripennis Male Pupae Nasonia ...    44   8.5    1
(AW829286) ra38c01.y1 Bird-Rao Meloidogyne incognita J2 Melo...    44   8.5    1
(FG107809) PRAG-aab43a07.b1 Sand_fly_EST_Normalized Phleboto...    44   8.5    1
(FE813174) CCAG30899.b1 CCAG Petrolisthes cinctipes heart, g...    44   8.5    1
(FE778601) CCAG10280.b3 CCAG Petrolisthes cinctipes heart, g...    44   8.5    1
(AW783397) ra28c06.y1 Bird-Rao Meloidogyne incognita J2 Melo...    44   8.5    1
(EY301390) CAWX15550.fwd CAWX Helobdella robusta Primary Ear...    44   8.5    1
(EU345362) Listeria monocytogenes clone FSL R2-128 unknown (...    44   8.5    1
(EU345353) Listeria monocytogenes clone FSL J2-074 unknown (...    44   8.5    1
(EU345351) Listeria monocytogenes clone FSL J1-168 unknown (...    44   8.5    1
(EU345348) Listeria monocytogenes clone FSL F2-695 unknown (...    44   8.5    1
(EU345336) Listeria monocytogenes clone FSL F2-270 unknown (...    44   8.5    1
(CU207366) Gramella forsetii KT0803 complete circular genome.      44   8.5    1
(CP001186) Bacillus cereus G9842, complete genome.                 44   8.5    1
(CP001175) Listeria monocytogenes HCC23, complete genome.          44   8.5    1
(CU442730) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   8.5    6
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    30   8.5    11
(AC223520) Bos taurus clone CH240-466M20, WORKING DRAFT SEQU...    36   8.6    6
(EJ577599) 1092960121849 Global-Ocean-Sampling_GS-29-01-01-1...    30   8.7    3
(GC698488) Sequence 13733 from patent US 6812339.                  34   8.7    7
(AZ551655) ENTDG36TR Entamoeba histolytica Sheared DNA Entam...    32   8.7    3
(AM452154) Vitis vinifera contig VV78X213071.11, whole genom...    40   8.8    3
(EJ568771) 1092960015481 Global-Ocean-Sampling_GS-29-01-01-1...    30   9.1    3
(EA102718) Sequence 101 from patent US 7195870.                    32   9.1    5
(AX323625) Sequence 113 from Patent WO0192565.                     32   9.1    5
(AX277938) Sequence 101 from Patent WO0177375.                     32   9.1    5
(GM995973) Sequence 113 from Patent EP2014776.                     32   9.1    5
(AC130002) Rattus norvegicus clone CH230-306F19, *** SEQUENC...    38   9.2    6
(AC148055) Atelerix albiventris clone LB4-416H21, WORKING DR...    40   9.3    5
(AC107106) Rattus norvegicus clone CH230-155M2, WORKING DRAF...    34   9.3    7
(AP008209) Oryza sativa (japonica cultivar-group) genomic DN...    32   9.4    2
(AC190419) Trichinella spiralis BAC clone TS195-5H12 from ch...    34   9.6    5
(AC190207) Pan troglodytes BAC clone CH251-667J1 from chromo...    36   9.9    4

>(AU073260) Dictyostelium discoideum slug cDNA, clone SSG519.
          Length = 240

 Score =  295 bits (149), Expect(2) = e-108
 Identities = 149/149 (100%)
 Strand = Plus / Plus


Query: 1   attgccaccattttaatattaaaaaataaattttattatgactagtgtaagcagtgatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   attgccaccattttaatattaaaaaataaattttattatgactagtgtaagcagtgatag 60


Query: 61  tagaaaacaatttaaaggttcaggtgatcatgtatttgattttgataataaagaaaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tagaaaacaatttaaaggttcaggtgatcatgtatttgattttgataataaagaaaatca 120


Query: 121 tgatttcctttcattaacaataaaacaag 149
           |||||||||||||||||||||||||||||
Sbjct: 121 tgatttcctttcattaacaataaaacaag 149

 Score =  131 bits (66), Expect(2) = e-108
 Identities = 66/66 (100%)
 Strand = Plus / Plus


Query: 175 caccaatgtttcattatcaccatcaattaaaagtcaagcaacatcttccactggtggtaa 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 caccaatgtttcattatcaccatcaattaaaagtcaagcaacatcttccactggtggtaa 234


Query: 235 taagaa 240
           ||||||
Sbjct: 235 taagaa 240

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 859,357,146
Number of extensions: 67502208
Number of successful extensions: 6420053
Number of sequences better than 10.0: 405
Length of query: 808
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 784
Effective length of database: 102,084,959,077
Effective search space: 80034607916368
Effective search space used: 80034607916368
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 8. 1
Homology vs Protein 
Query= Contig-U05250-1 (Contig-U05250-1Q) /CSM_Contig/Contig-U05250-1Q.Seq.d
         (808 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54B75) RecName: Full=Uncharacterized protein DDB_G0293860;          234   3e-60
AE014188_193(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    35   2.2
EF429247_5(EF429247|pid:none) Penicillium lilacinoechinulatum st...    35   2.9
BT046353_1(BT046353|pid:none) Salmo salar clone ssal-rgb-526-055...    33   8.5

>(Q54B75) RecName: Full=Uncharacterized protein DDB_G0293860;
          Length = 270

 Score =  234 bits (596), Expect = 3e-60
 Identities = 120/130 (92%), Positives = 120/130 (92%)
 Frame = +2

Query: 38  MTSVSSDSRKQFKGSGDHVFDFDNKENHDFLSLTIKQDXXXXXXXXXXVSLSPSIKSQAT 217
           MTSVSSDSRKQFKGSGDHVFDFDNKENHDFLSLTIKQD          VSLSPSIKSQAT
Sbjct: 1   MTSVSSDSRKQFKGSGDHVFDFDNKENHDFLSLTIKQDNNNNNNNNTNVSLSPSIKSQAT 60

Query: 218 SSTGGNKNQIFSQMRELDKKSLMLIETYYRDKLITYQEKLKRELEQIYNKKLQSLKIQYD 397
           SSTGGNKNQIFSQMRELDKKSLMLIETYYRDKLITYQEKLKRELEQIYNKKLQSLKIQYD
Sbjct: 61  SSTGGNKNQIFSQMRELDKKSLMLIETYYRDKLITYQEKLKRELEQIYNKKLQSLKIQYD 120

Query: 398 SDSYLKFKQF 427
           SDSYLKFKQF
Sbjct: 121 SDSYLKFKQF 130

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 40/65 (61%), Positives = 40/65 (61%)
 Frame = +2

Query: 611 IVNDFKTDXXXXXXXXXXXXXXXXTKSITDLFIQQVDISTDTIDFQSFLSNIVXXXXXXX 790
           IVNDFKTD                TKSITDLFIQQVDISTDTIDFQSFLSNIV
Sbjct: 206 IVNDFKTDKILKEKEEILNKLELITKSITDLFIQQVDISTDTIDFQSFLSNIVATTTTTT 265

Query: 791 XXISN 805
             ISN
Sbjct: 266 ATISN 270

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 608,405,827
Number of extensions: 7768664
Number of successful extensions: 29101
Number of sequences better than 10.0: 4
Number of HSP's gapped: 29055
Number of HSP's successfully gapped: 5
Length of query: 269
Length of database: 1,061,185,681
Length adjustment: 126
Effective length of query: 143
Effective length of database: 649,361,233
Effective search space: 92858656319
Effective search space used: 92858656319
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.92  gvh: 0.33  alm: 0.46  top: 0.43  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for Contig-U05250-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0