Contig-U05245-1
Contig ID Contig-U05245-1
Contig update 2001. 8.29
Contig sequence
>Contig-U05245-1 (Contig-U05245-1Q) /CSM_Contig/Contig-U05245-1Q.Seq.d
AAATGACAAGTGCACAACCAAAAGCAGTTGATGTTTCAACTATACCTGGA
TTTAAAAAATGGTATATTGTATATCCAAACCATATAAATAGTGAACTTAC
AAAAGAAAAAGGTAGAAAGGTATCAAAAGAGCATGGTGTCAAAAACCCAA
CATTACCAGAAATAGCAGAAGCAACAGCTCAATTGGGTTTACCTTGTATT
ATTGAAACGTCTAAAGGTTATCCAAAAGAATTCTTTTTAAGAGGTAGACT
TAGAATTAACTTTTTCTGTGATGGTACAACAATGCCAAGAAATCCTCATA
TTCCAAATAAAACTGTATTATTAGTTAAAATAGCAGAAAGAATTAAATTA
ATAAATCCAAATAGACCAGAACCATTTAATCCAATATCAATGTTAGCACC
AATTCAAGCAGTTTCACAAAAAGAGAAAAAACCAGCACCACAACCAACTA
CAACTACAACTACAACAACTACACCATCATCATCATCTTCTTCTTCTTCT
AAAGGTGGAAAGAAAAAGAAGAATGTGAATGTAATTTAAAAAAAAAAAAA
AACATATAATAGGAAATAAAAATAAATTATAATTTTTTATAAAATAAAGG
AAACGCAACATAGGATGGTTCTATAATTTCTTTAAAAAAAAAAAA

Gap no gap
Contig length 645
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 4983436
End point 4984081
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U05245
List of clone(s)

est1=SSG507E,1,641
est2=SSK157E,85,646
Translated Amino Acid sequence
MTSAQPKAVDVSTIPGFKKWYIVYPNHINSELTKEKGRKVSKEHGVKNPTLPEIAEATAQ
LGLPCIIETSKGYPKEFFLRGRLRINFFCDGTTMPRNPHIPNKTVLLVKIAERIKLINPN
RPEPFNPISMLAPIQAVSQKEKKPAPQPTTTTTTTTTPSSSSSSSSKGGKKKKNVNVI*k
kkktynrk*k*iiifykiketqhrmvl*fl*kkk


Translated Amino Acid sequence (All Frames)
Frame A:
k*qvhnqkqlmfqlyldlkngilyiqti*ivnlqkkkveryqksmvsktqhyqk*qkqql
nwvylvllkrlkviqknsf*evdleltfsvmvqqcqeilifqiklyy*lk*qkeln**iq
idqnhliqyqc*hqfkqfhkkrknqhhnqlqlqlqqlhhhhhlllllkverkrrm*m*fk
kkkkhiignknkl*ffik*rkrnigwfynffkkkk


Frame B:
ndkcttkss*cfnytwi*kmvyciskpyk**tykrkr*kgikrawcqkpnitrnsrsnss
igftlyy*nv*rlskrilfkr*t*n*lfl*wynnakkssysk*nciis*nsrkn*inksk
*trti*sninvstnsssftkrektstttnynynynnytiiiiffff*rwkekeececnlk
kkkni**eikinynfl*nkgnat*dgsiislkkk


Frame C:
MTSAQPKAVDVSTIPGFKKWYIVYPNHINSELTKEKGRKVSKEHGVKNPTLPEIAEATAQ
LGLPCIIETSKGYPKEFFLRGRLRINFFCDGTTMPRNPHIPNKTVLLVKIAERIKLINPN
RPEPFNPISMLAPIQAVSQKEKKPAPQPTTTTTTTTTPSSSSSSSSKGGKKKKNVNVI*k
kkktynrk*k*iiifykiketqhrmvl*fl*kkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05245-1 (Contig-U05245-1Q)
/CSM_Contig/Contig-U05245-1Q.Seq.d
(645 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05245-1 (Contig-U05245-1Q) /CSM_Contig/Conti... 1065 0.0
Contig-U11446-1 (Contig-U11446-1Q) /CSM_Contig/Conti... 58 1e-08
Contig-U01120-1 (Contig-U01120-1Q) /CSM_Contig/Conti... 54 2e-07
Contig-U01125-1 (Contig-U01125-1Q) /CSM_Contig/Conti... 52 8e-07
Contig-U14315-1 (Contig-U14315-1Q) /CSM_Contig/Conti... 50 3e-06
Contig-U11793-1 (Contig-U11793-1Q) /CSM_Contig/Conti... 50 3e-06
Contig-U03565-1 (Contig-U03565-1Q) /CSM_Contig/Conti... 50 3e-06
Contig-U11038-1 (Contig-U11038-1Q) /CSM_Contig/Conti... 48 1e-05
Contig-U09674-1 (Contig-U09674-1Q) /CSM_Contig/Conti... 48 1e-05
Contig-U06707-1 (Contig-U06707-1Q) /CSM_Contig/Conti... 48 1e-05

>Contig-U05245-1 (Contig-U05245-1Q) /CSM_Contig/Contig-U05245-1Q.Seq.d
Length = 645

Score = 1065 bits (537), Expect = 0.0
Identities = 537/537 (100%)
Strand = Plus / Plus


Query: 1 aaatgacaagtgcacaaccaaaagcagttgatgtttcaactatacctggatttaaaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaatgacaagtgcacaaccaaaagcagttgatgtttcaactatacctggatttaaaaaat 60


Query: 61 ggtatattgtatatccaaaccatataaatagtgaacttacaaaagaaaaaggtagaaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtatattgtatatccaaaccatataaatagtgaacttacaaaagaaaaaggtagaaagg 120


Query: 121 tatcaaaagagcatggtgtcaaaaacccaacattaccagaaatagcagaagcaacagctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tatcaaaagagcatggtgtcaaaaacccaacattaccagaaatagcagaagcaacagctc 180


Query: 181 aattgggtttaccttgtattattgaaacgtctaaaggttatccaaaagaattctttttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aattgggtttaccttgtattattgaaacgtctaaaggttatccaaaagaattctttttaa 240


Query: 241 gaggtagacttagaattaactttttctgtgatggtacaacaatgccaagaaatcctcata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaggtagacttagaattaactttttctgtgatggtacaacaatgccaagaaatcctcata 300


Query: 301 ttccaaataaaactgtattattagttaaaatagcagaaagaattaaattaataaatccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttccaaataaaactgtattattagttaaaatagcagaaagaattaaattaataaatccaa 360


Query: 361 atagaccagaaccatttaatccaatatcaatgttagcaccaattcaagcagtttcacaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atagaccagaaccatttaatccaatatcaatgttagcaccaattcaagcagtttcacaaa 420


Query: 421 aagagaaaaaaccagcaccacaaccaactacaactacaactacaacaactacaccatcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aagagaaaaaaccagcaccacaaccaactacaactacaactacaacaactacaccatcat 480


Query: 481 catcatcttcttcttcttctaaaggtggaaagaaaaagaagaatgtgaatgtaattt 537
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 catcatcttcttcttcttctaaaggtggaaagaaaaagaagaatgtgaatgtaattt 537


Score = 69.9 bits (35), Expect = 3e-12
Identities = 35/35 (100%)
Strand = Plus / Plus


Query: 599 ggaaacgcaacataggatggttctataatttcttt 633
|||||||||||||||||||||||||||||||||||
Sbjct: 599 ggaaacgcaacataggatggttctataatttcttt 633


>Contig-U11446-1 (Contig-U11446-1Q) /CSM_Contig/Contig-U11446-1Q.Seq.d
Length = 2402

Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus


Query: 445 caactacaactacaactacaacaactaca 473
|||||||||||||||||||||||||||||
Sbjct: 2325 caactacaactacaactacaacaactaca 2353


Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 445 caactacaactacaactacaac 466
||||||||||||||||||||||
Sbjct: 2319 caactacaactacaactacaac 2340


Score = 34.2 bits (17), Expect = 0.18
Identities = 23/25 (92%)
Strand = Plus / Plus


Query: 445 caactacaactacaactacaacaac 469
|||||||||||||||| || |||||
Sbjct: 2331 caactacaactacaacaactacaac 2355


>Contig-U01120-1 (Contig-U01120-1Q) /CSM_Contig/Contig-U01120-1Q.Seq.d
Length = 1718

Score = 54.0 bits (27), Expect = 2e-07
Identities = 39/43 (90%)
Strand = Plus / Plus


Query: 445 caactacaactacaactacaacaactacaccatcatcatcatc 487
||||||||||||||||||||||| | || |||||||||||||
Sbjct: 542 caactacaactacaactacaacatcatcatcatcatcatcatc 584


Score = 52.0 bits (26), Expect = 8e-07
Identities = 35/38 (92%)
Strand = Plus / Plus


Query: 450 acaactacaactacaacaactacaccatcatcatcatc 487
||||||||||||||||| || ||| |||||||||||||
Sbjct: 541 acaactacaactacaactacaacatcatcatcatcatc 578


Score = 30.2 bits (15), Expect = 2.8
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 510 aagaaaaagaagaat 524
|||||||||||||||
Sbjct: 64 aagaaaaagaagaat 78


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,521
Number of Sequences: 6905
Number of extensions: 14521
Number of successful extensions: 3686
Number of sequences better than 10.0: 570
length of query: 645
length of database: 5,674,871
effective HSP length: 16
effective length of query: 629
effective length of database: 5,564,391
effective search space: 3500001939
effective search space used: 3500001939
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7.15
Homology vs DNA
Query= Contig-U05245-1 (Contig-U05245-1Q) /CSM_Contig/Contig-U05245-1Q.Seq.d
(645 letters)

Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 613 0.0 4
(C91389) Dictyostelium discoideum slug cDNA, clone SSK157. 654 0.0 3
(AU073253) Dictyostelium discoideum slug cDNA, clone SSG507. 476 e-130 1
(C90077) Dictyostelium discoideum slug cDNA, clone SSG507. 100 4e-32 3
(AU266529) Dictyostelium discoideum vegetative cDNA clone:VS... 121 4e-23 1
(AU266530) Dictyostelium discoideum vegetative cDNA clone:VS... 60 1e-04 1
(AW929220) EST338008 tomato flower buds 8 mm to pre-anthesis... 48 0.004 2
(GD999532) 454GmaGlobSeed742181 Soybean Seeds Containing Glo... 48 0.005 2
(AY643844) Hordeum vulgare subsp. vulgare clones BAC 799C8 a... 54 0.007 1
(DV127449) CV03048A1G04.f1 CV03-normalized library Euphorbia... 54 0.007 1
(BJ262593) Triticum aestivum cDNA clone:whh19h10, 3' end, si... 54 0.007 1
(GE612151) CCPX8932.b1_H01.ab1 CCP(UWX) Globe Artichoke Cyna... 54 0.007 1
(GE609597) CCPX6532.b1_G01.ab1 CCP(UWX) Globe Artichoke Cyna... 54 0.007 1
(GE606628) CCPX3728.b1_O20.ab1 CCP(UWX) Globe Artichoke Cyna... 54 0.007 1
(GE604767) CCPX1815.b1_M22.ab1 CCP(UWX) Globe Artichoke Cyna... 54 0.007 1
(GE602594) CCPX10790.b1_K09.ab1 CCP(UWX) Globe Artichoke Cyn... 54 0.007 1
(EX258425) 1438494_5_E12_044 PY06 Carica papaya cDNA, mRNA s... 54 0.007 1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 48 0.008 7
(BP886126) Solanum lycopersicum cDNA, clone: FA33CF05, 5' en... 48 0.011 2
(AC125933) Rattus norvegicus clone CH230-68N1, *** SEQUENCIN... 48 0.012 4
(AW217762) EST296476 tomato flower buds 8 mm to pre-anthesis... 48 0.012 2
(AC147247) Mus musculus BAC clone RP23-468K14 from 8, comple... 48 0.014 2
(AC126038) Mus musculus BAC clone RP24-230C18 from chromosom... 48 0.015 2
(CE194963) tigr-gss-dog-17000371493589 Dog Library Canis lup... 48 0.016 2
(EX752653) RR1CG11JQ RR1(CS) Raphanus raphanistrum subsp. ma... 48 0.017 2
(EX898742) RS2BJ17JQ RS2(RS) Raphanus sativus cDNA 3', mRNA ... 48 0.018 2
(AC128830) Rattus norvegicus clone CH230-163G23, WORKING DRA... 48 0.022 6
(AZ675050) ENTHD39TF Entamoeba histolytica Sheared DNA Entam... 52 0.027 1
(AZ551092) ENTFJ22TF Entamoeba histolytica Sheared DNA Entam... 52 0.027 1
(AZ531291) ENTBQ34TR Entamoeba histolytica Sheared DNA Entam... 52 0.027 1
(DX347009) OR_ABa0276P23.f OR_ABa Oryza ridleyi genomic clon... 52 0.027 1
(EH736840) CNMM9930.b1_D12.ab1 CNM(LMS) spotted knapweed Cen... 52 0.027 1
(DV711939) CGN-60865 Cherry of Early Development Stage Coffe... 52 0.027 1
(DV704425) CGN-51212 Cherry of Early Development Stage Coffe... 52 0.027 1
(DV676346) CGN-13716 Pericarp Coffea canephora cDNA clone cc... 52 0.027 1
(FG583560) TpNBL012187 Trichinella pseudospiralis new born l... 52 0.027 1
(EX955524) IF1_53_A03_A067.b1 Iris fulva EST Library IF1 Iri... 52 0.027 1
(CV794223) Mdst6023g02.y1 Mdst Malus x domestica cDNA clone ... 48 0.032 2
(AC234223) Solanum lycopersicum chromosome 9 clone C09SLm009... 50 0.034 2
(AC123279) Rattus norvegicus clone CH230-357A14, *** SEQUENC... 48 0.049 3
(AC114450) Rattus norvegicus clone CH230-126H22, WORKING DRA... 48 0.052 4
(AC126742) Rattus norvegicus clone CH230-4G23, WORKING DRAFT... 48 0.053 4
(AC092203) Mus musculus strain C57BL/6J chromosome 3 clone r... 48 0.054 3
(FD554060) RR4F442JQ RR4(PB) Raphanus raphanistrum subsp. la... 46 0.063 2
(DY938286) CHPX5098.b1_D03.ab1 CHP(XYZ) plains sunflower Hel... 44 0.073 2
(AC119603) Rattus norvegicus clone CH230-438D22, *** SEQUENC... 40 0.075 5
(AC163487) Mus musculus chromosome 1 clone RP23-209D19 map 1... 46 0.081 4
(AC213013) Populus trichocarpa clone POP018-B03, complete se... 48 0.087 4
(AC025907) Oryza sativa Japonica Group chromosome 10 clone n... 50 0.089 4
(AC178025) Strongylocentrotus purpuratus clone R3-3055H16, W... 48 0.097 5
(AC117222) Mus musculus BAC clone RP23-347H12 from chromosom... 48 0.098 4
(AC119968) Mus musculus chromosome 8, clone RP24-473C10, com... 50 0.11 1
(FM992693) Candida dubliniensis CD36 chromosome 6, complete ... 50 0.11 1
(AY193689) Lactuca serriola clone RAB6 resistance protein RG... 50 0.11 1
(AY193686) Lactuca serriola clone RAB22 resistance protein R... 50 0.11 1
(AY193652) Lactuca saligna clone LC8 resistance protein RGC2... 50 0.11 1
(AY193570) Lactuca saligna clone LB4 resistance protein RGC2... 50 0.11 1
(AY193517) Lactuca saligna clone LA11 resistance protein RGC... 50 0.11 1
(AY193498) Lactuca serriola clone KT143 resistance protein R... 50 0.11 1
(AY193495) Lactuca serriola clone KA83 resistance protein RG... 50 0.11 1
(AY193490) Lactuca serriola clone KT75 resistance protein RG... 50 0.11 1
(AY193489) Lactuca serriola clone KT36 resistance protein RG... 50 0.11 1
(AY193488) Lactuca serriola clone KT112 resistance protein R... 50 0.11 1
(AY193482) Lactuca serriola clone K383 resistance protein RG... 50 0.11 1
(AY193481) Lactuca serriola clone K639 resistance protein RG... 50 0.11 1
(AY193480) Lactuca serriola clone K289 resistance protein RG... 50 0.11 1
(AY193479) Lactuca saligna clone K2352 resistance protein RG... 50 0.11 1
(AY193473) Lactuca serriola clone KA68 resistance protein RG... 50 0.11 1
(AY193472) Lactuca serriola clone KA47 resistance protein RG... 50 0.11 1
(AY193471) Lactuca serriola clone KA27 resistance protein RG... 50 0.11 1
(AY193469) Lactuca serriola clone K1274 resistance protein R... 50 0.11 1
(AY193468) Lactuca serriola clone KA9 resistance protein RGC... 50 0.11 1
(AY063075) Arabidopsis thaliana unknown protein (At5g27560) ... 50 0.11 1
(AP008216) Oryza sativa (japonica cultivar-group) genomic DN... 50 0.11 1
(AK069924) Oryza sativa Japonica Group cDNA clone:J023035J22... 50 0.11 1
(AF370259) Arabidopsis thaliana unknown protein (At5g27560) ... 50 0.11 1
(AC212437) Solanum lycopersicum chromosome 11 clone C11HBa01... 50 0.11 1
(AC007478) Arabidopsis thaliana BAC F15A18 from chromosome V... 50 0.11 1
(AC159507) Bos taurus clone CH240-72A16, WORKING DRAFT SEQUE... 50 0.11 1
(AP010044) Lotus japonicus genomic DNA, clone: LjT30N24, TM0... 50 0.11 1
(AC222577) Bos taurus clone CH240-444N16, WORKING DRAFT SEQU... 50 0.11 1
(AC189439) Brassica rapa subsp. pekinensis clone KBrB069G15,... 50 0.11 1
(ED587997) SALK_045550.56.00.x Arabidopsis thaliana TDNA ins... 50 0.11 1
(ED587992) SALK_045541.55.40.x Arabidopsis thaliana TDNA ins... 50 0.11 1
(DE214360) Trifolium pratense DNA, clone:RCG02820. 50 0.11 1
(DE213827) Trifolium pratense DNA, clone:RCG02144. 50 0.11 1
(DE213546) Trifolium pratense DNA, clone:RCG01796. 50 0.11 1
(DE213495) Trifolium pratense DNA, clone:RCG01736. 50 0.11 1
(CW752070) OP__Ba0073L09.f OP__Ba Oryza punctata genomic clo... 50 0.11 1
(BH746648) SALK_045559.17.95.x Arabidopsis thaliana TDNA ins... 50 0.11 1
(BH746646) SALK_045549.29.20.x Arabidopsis thaliana TDNA ins... 50 0.11 1
(BH634473) SALK_045550 Arabidopsis thaliana TDNA insertion l... 50 0.11 1
(BH634468) SALK_045541 Arabidopsis thaliana TDNA insertion l... 50 0.11 1
(EL392210) CFFM3775.b1_N08.ab1 CFF(LMS) safflower Carthamus ... 50 0.11 1
(EH965014) EBENXNS02IMIBI 8-day Arabidopsis seedlings, aeria... 50 0.11 1
(EH692279) CCIM4405.b1_J21.ab1 CCI(LMS) chicory Cichorium in... 50 0.11 1
(EE612987) CHWM10130.b1_D13.ab1 CHW(LMS) silverleaf sunflowe... 50 0.11 1
(DY287830) IC0AAA68DF12RM1 CitNFL Citrus clementina cDNA 5',... 50 0.11 1
(DY279575) IC0AAA49DB06RM1 CitNFL Citrus clementina cDNA 5',... 50 0.11 1
(DY273208) IC0AAA33BC01RM1 CitNFL Citrus clementina cDNA 5',... 50 0.11 1
(DY267874) IC0AAA22CF05RM1 CitNFL Citrus clementina cDNA 5',... 50 0.11 1
(DV155077) CV03096B2G04.f1 CV03-normalized library Euphorbia... 50 0.11 1
(DR333598) 167675 CERES-148 Arabidopsis thaliana cDNA clone ... 50 0.11 1
(DR333597) 956626 CERES-148 Arabidopsis thaliana cDNA clone ... 50 0.11 1
(DR333596) 67296 CERES-148 Arabidopsis thaliana cDNA clone 3... 50 0.11 1
(DR333595) 1133461 CERES-148 Arabidopsis thaliana cDNA clone... 50 0.11 1
(DR333593) 66033 CERES-148 Arabidopsis thaliana cDNA clone 3... 50 0.11 1
(DR333592) 151603 CERES-148 Arabidopsis thaliana cDNA clone ... 50 0.11 1
(DR333591) 12821962 CERES-AN65 Arabidopsis thaliana cDNA clo... 50 0.11 1
(DR333590) 12822250 CERES-AN65 Arabidopsis thaliana cDNA clo... 50 0.11 1
(DR333589) 12844075 CERES-AN65 Arabidopsis thaliana cDNA clo... 50 0.11 1
(DR333588) 65003 CERES-147 Arabidopsis thaliana cDNA clone 3... 50 0.11 1
(DR333587) 148850 CERES-148 Arabidopsis thaliana cDNA clone ... 50 0.11 1
(DR333586) 42584 CERES-148 Arabidopsis thaliana cDNA clone 7... 50 0.11 1
(CU601129) Theobroma cacao, mRNA sequence (KZ0AAG3YO05FM1). 50 0.11 1
(CU590235) Theobroma cacao, mRNA sequence (KZ0ACR2YI21FM1). 50 0.11 1
(CU588799) Theobroma cacao, mRNA sequence (KZ0AC4YI21FM1). 50 0.11 1
(CU585833) Theobroma cacao, mRNA sequence (KZ0AAB7YI12FM1). 50 0.11 1
(CU572386) Theobroma cacao, mRNA sequence (KZ0AAP15YH23FM1). 50 0.11 1
(CU498234) Theobroma cacao, mRNA sequence (KZ0ACV4YI13FM1). 50 0.11 1
(CO130399) GR__Eb33C04.r GR__Eb Gossypium raimondii cDNA clo... 50 0.11 1
(CO070974) GR__Ea28F10.r GR__Ea Gossypium raimondii cDNA clo... 50 0.11 1
(CK053140) 57859rsicek_13434.y1 Oryza sativa cv. PA64s panic... 50 0.11 1
(CI345087) Oryza sativa Japonica Group cDNA, clone: J02B3035... 50 0.11 1
(CI262561) Oryza sativa Japonica Group cDNA, clone: 046-M025... 50 0.11 1
(CI262515) Oryza sativa Japonica Group cDNA, clone: 046-M025... 50 0.11 1
(CI244069) Oryza sativa Japonica Group cDNA, clone: 043-M007... 50 0.11 1
(CI243964) Oryza sativa Japonica Group cDNA, clone: 043-M006... 50 0.11 1
(CI139756) Oryza sativa Japonica Group cDNA, clone: 027-M105... 50 0.11 1
(CF984503) 16758rsicee_14352.y1 Oryza sativa cv. LYP9 tiller... 50 0.11 1
(BU958673) AGENCOURT_10617789 NIH_MGC_141 Homo sapiens cDNA ... 50 0.11 1
(BQ114684) EST600260 mixed potato tissues Solanum tuberosum ... 50 0.11 1
(BP865954) Arabidopsis thaliana cDNA clone:RAFL21-76-A21, 5'... 50 0.11 1
(BP849772) Arabidopsis thaliana cDNA clone:RAFL25-10-I05, 5'... 50 0.11 1
(BP843168) Arabidopsis thaliana cDNA clone:RAFL21-57-C18, 5'... 50 0.11 1
(BF052949) EST438179 potato leaves and petioles Solanum tube... 50 0.11 1
(BF052895) EST438125 potato leaves and petioles Solanum tube... 50 0.11 1
(BE451626) EST402502 tomato root, plants pre-anthesis, Corne... 50 0.11 1
(FG861597) UCRVU05_CCNN7493_b6 Cowpea IT84S-2049 Mixed Tissu... 50 0.11 1
(FF219859) G809P149RA19.T0 Culex pipiens quinquefasciatus Fi... 50 0.11 1
(FF219858) G809P149FA19.T0 Culex pipiens quinquefasciatus Fi... 50 0.11 1
(FC912281) IC0AAA68DF12RM1 IVIA1 Citrus clementina cDNA clon... 50 0.11 1
(FC912247) IC0AAA22CF05RM1 IVIA1 Citrus clementina cDNA clon... 50 0.11 1
(FC911494) IC0AAA33BC01RM1 IVIA1 Citrus clementina cDNA clon... 50 0.11 1
(FC888044) IC0AAA49DB06RM1 IVIA1 Citrus clementina cDNA clon... 50 0.11 1
(EY362558) CAWZ8313.rev CAWZ Helobdella robusta Primary Late... 50 0.11 1
(EY355888) CAWZ4057.fwd CAWZ Helobdella robusta Primary Late... 50 0.11 1
(EY355887) CAWZ4057.rev CAWZ Helobdella robusta Primary Late... 50 0.11 1
(EY352686) CAWZ18958.fwd CAWZ Helobdella robusta Primary Lat... 50 0.11 1
(EY352685) CAWZ18958.rev CAWZ Helobdella robusta Primary Lat... 50 0.11 1
(EY349355) CAWZ17002.rev CAWZ Helobdella robusta Primary Lat... 50 0.11 1
(EY346066) CAWZ14456.rev CAWZ Helobdella robusta Primary Lat... 50 0.11 1
(EY342290) CAWZ11755.fwd CAWZ Helobdella robusta Primary Lat... 50 0.11 1
(EY316049) CAWX26397.fwd CAWX Helobdella robusta Primary Ear... 50 0.11 1
(EY316048) CAWX26397.rev CAWX Helobdella robusta Primary Ear... 50 0.11 1
(EY148055) CBTN11093.g1_J14.ab1:P Triphysaria pusilla root t... 50 0.11 1
(EY148054) CBTN11093.b1_J14.ab1:P Triphysaria pusilla root t... 50 0.11 1
(EW701229) EST00969 Hemp Uni-ZAP XR cDNA library Cannabis sa... 50 0.11 1
(EV540399) RR2AB65JQ RR2(MS) Raphanus raphanistrum subsp. ra... 50 0.11 1
(AV821564) Arabidopsis thaliana cDNA clone:RAFL04-13-J16, 5'... 50 0.11 1
(AJ786369) Borrelia garinii lp54 plasmid, isolate ZQ1. 50 0.11 1
(AC157882) Monodelphis domestica clone VMRC6-701K7, WORKING ... 48 0.12 3
(L15317) Homo sapiens (clone NG4-5) processed pseudogene of ... 48 0.12 2
(AP010386) Lotus japonicus genomic DNA, chromosome 1, clone:... 48 0.14 3
(AL954852) Oryza sativa chromosome 12, . BAC OJ1573_A06 of l... 48 0.15 2
(AC141031) Rattus norvegicus clone CH230-477G1, WORKING DRAF... 48 0.16 2
(AL031277) Human DNA sequence from clone RP5-1177E19 on chro... 48 0.16 4
(AC134195) Rattus norvegicus clone CH230-170D12, WORKING DRA... 48 0.17 5
(AC135451) Rattus norvegicus clone CH230-475A9, WORKING DRAF... 48 0.18 2
(AC124938) Rattus norvegicus clone CH230-344D21, WORKING DRA... 46 0.18 3
(AC136016) Rattus norvegicus clone CH230-369L13, WORKING DRA... 48 0.18 2
(AP002370) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 48 0.18 2
(EY390002) CAXA8498.rev CAXA Helobdella robusta Subtracted L... 46 0.20 2
(BJ442885) Dictyostelium discoideum cDNA clone:ddv51b11, 3' ... 46 0.22 2
(EL501540) 079_PFLAB1-M-P26B.AB1 Blood stage Plasmodium falc... 46 0.23 2
(AC105527) Rattus norvegicus clone CH230-207N3, *** SEQUENCI... 48 0.24 3
(AC106580) Rattus norvegicus clone CH230-202O6, *** SEQUENCI... 48 0.24 2
(AM449397) Vitis vinifera contig VV78X157028.9, whole genome... 48 0.25 2
(FG793715) G1148P318RO4.T0 Anolis carolinensis pooled normal... 46 0.25 2
(AC102616) Mus musculus chromosome 18, clone RP23-425L21, co... 48 0.25 5
(AB263749) Ipomoea trifida DNA, self-incompatibility (S-) lo... 36 0.26 2
(EL505719) H06_513_302.AB1 Blood stage Plasmodium falciparum... 46 0.26 2
(AC119299) Rattus norvegicus clone CH230-312O10, WORKING DRA... 44 0.26 4
(CP001500) Borrelia burgdorferi 94a plasmid 94a_lp54, comple... 46 0.26 3
(Z75889) Human DNA sequence from clone RP1-267P19 on chromos... 40 0.26 4
(DT732638) EST1166488 Aquilegia cDNA library Aquilegia formo... 42 0.26 2
(AC074234) Homo sapiens chromosome 1 clone RP11-251N10, WORK... 48 0.27 4
(AC168306) Mus musculus chromosome 18, clone RP23-225N9, com... 48 0.28 5
(AC097900) Rattus norvegicus clone CH230-182D7, *** SEQUENCI... 48 0.29 3
(AM478772) Vitis vinifera contig VV78X021331.3, whole genome... 44 0.29 2
(AC135739) Rattus norvegicus clone CH230-1D12, *** SEQUENCIN... 48 0.29 3
(AC188097) Pongo abelii chromosome UNK clone CH276-27H12, co... 40 0.30 5
(AL353724) Human DNA sequence from clone RP11-448I13 on chro... 40 0.30 4
(AL398612) T7 end of clone AS0AA010C03 of library AS0AA from... 46 0.31 2
(CR931808) Medicago truncatula chromosome 5 clone mth2-144o1... 44 0.32 3
(EY789974) CR05-C3-700-130-G07-CT.F Mandarin fruit, developm... 42 0.32 2
(AC098079) Rattus norvegicus clone CH230-126O22, *** SEQUENC... 48 0.36 3
(AC119448) Rattus norvegicus clone CH230-44L13, WORKING DRAF... 48 0.37 4
(AC177657) Strongylocentrotus purpuratus clone R3-1017O7, WO... 48 0.37 3
(AC147944) Atelerix albiventris clone LB4-218C14, WORKING DR... 48 0.37 3
(AC175894) Strongylocentrotus purpuratus clone R3-15A19, WOR... 48 0.38 3
(EL028087) EBENXNS02JN8EA 8-day Arabidopsis seedlings, aeria... 42 0.39 2
(EL327102) EB3RODY02H67RX 8-day Arabidopsis seedlings, aeria... 42 0.39 2
(AP005833) Oryza sativa Japonica Group genomic DNA, chromoso... 38 0.40 5
(AC176935) Strongylocentrotus purpuratus clone R3-1104F12, W... 48 0.43 2
(AC234740) Brassica rapa subsp. pekinensis clone KBrH014J09,... 42 0.43 7
(X89807) X.laevis mRNA for FGF receptor 4. 48 0.43 1
(FJ483923) Podarcis gaigeae clone P024 microsatellite sequence. 48 0.43 1
(EF117313) Etheostoma chermocki clone Eche002 microsatellite... 48 0.43 1
(CU570988) Zebrafish DNA sequence from clone CH73-45O6 in li... 48 0.43 1
(CT583675) Zebrafish DNA sequence from clone DKEY-227G5 in l... 48 0.43 1
(CR855395) Zebrafish DNA sequence from clone CH211-106P4 in ... 48 0.43 1
(CR854988) Zebrafish DNA sequence from clone DKEY-147M6 in l... 48 0.43 1
(CR848811) Zebrafish DNA sequence from clone CH211-1D8 in li... 48 0.43 1
(CR762406) Zebrafish DNA sequence from clone DKEY-13D23 in l... 48 0.43 1
(BX890609) Zebrafish DNA sequence from clone DKEY-56E5 in li... 48 0.43 1
(BX649302) Zebrafish DNA sequence from clone CH211-248I6 in ... 48 0.43 1
(BX469913) Zebrafish DNA sequence from clone DKEY-237G5 in l... 48 0.43 1
(BX323071) Zebrafish DNA sequence from clone DKEYP-51F12 in ... 48 0.43 1
(BX248124) Zebrafish DNA sequence from clone CH211-214E3 in ... 48 0.43 1
(BT028189) Gasterosteus aculeatus clone CNB154-A03 mRNA sequ... 48 0.43 1
(BC170014) Xenopus laevis fibroblast growth factor receptor ... 48 0.43 1
(BC155256) Danio rerio BMS1-like, ribosome assembly protein ... 48 0.43 1
(AJ544892) Tetraodon nigroviridis crfb1 gene, crfb2 gene, cr... 48 0.43 1
(AF288453) Xenopus laevis fibroblast growth factor receptor ... 48 0.43 1
(AB007037) Xenopus laevis mRNA for FGF receptor 4b, complete... 48 0.43 1
(AF440570) Shrimp white spot syndrome virus, complete genome. 48 0.43 1
(AF369029) White spot syndrome virus, complete genome. 48 0.43 1
(BC172414) Synthetic construct Homo sapiens clone IMAGE:1000... 48 0.43 1
(BX323472) Arabidopsis thaliana transposon insertion STS SM_... 48 0.43 1
(BV679792) TMB2863 Upland cotton TM-1 Gossypium hirsutum STS... 48 0.43 1
(BV679765) TMB2493 Upland cotton TM-1 Gossypium hirsutum STS... 48 0.43 1
(BV679358) TMB0413 Upland cotton TM-1 Gossypium hirsutum STS... 48 0.43 1
(AL399616) T3 end of clone AS0AA016C08 of library AS0AA from... 48 0.43 1
(AF344151) Oryza sativa subsp. indica microsatellite marker ... 48 0.43 1
(AF343868) Oryza sativa subsp. indica microsatellite marker ... 48 0.43 1
(S72345) RI beta =cAMP-dependent protein kinase RI beta subu... 48 0.43 1
(CT025681) Mouse DNA sequence from clone RP24-325P17 on chro... 48 0.43 1
(CT025653) Mouse DNA sequence from clone RP23-62D21 on chrom... 48 0.43 1
(CT025592) Mouse DNA sequence from clone RP23-431J17 on chro... 48 0.43 1
(CT010503) Mouse DNA sequence from clone RP23-461N23 on chro... 48 0.43 1
(BX548065) Mouse DNA sequence from clone RP23-163B21 on chro... 48 0.43 1
(AL928992) Mouse DNA sequence from clone RP23-208O9 on chrom... 48 0.43 1
(AL928798) Mouse DNA sequence from clone RP23-7A19 on chromo... 48 0.43 1
(AL928640) Mouse DNA sequence from clone RP23-314C7 on chrom... 48 0.43 1
(AL844575) Mouse DNA sequence from clone RP23-156F1 on chrom... 48 0.43 1
(AL844515) Mouse DNA sequence from clone RP23-133G5 on chrom... 48 0.43 1
(AL772255) Mouse DNA sequence from clone RP23-172B16 on chro... 48 0.43 1
(AL683804) Mouse DNA sequence from clone RP23-17F2 on chromo... 48 0.43 1
(AL670673) Mouse DNA sequence from clone RP23-32L5 on chromo... 48 0.43 1
(AL645696) Mouse DNA sequence from clone RP23-429E18 on chro... 48 0.43 1
(AL645566) Mouse DNA sequence from clone RP23-398M13 on chro... 48 0.43 1
(AL627312) Mouse DNA sequence from clone RP23-276H1 on chrom... 48 0.43 1
(AL606488) Mouse DNA sequence from clone RP23-90E8 on chromo... 48 0.43 1
(AL606480) Mouse DNA sequence from clone RP23-112C19 on chro... 48 0.43 1
(AL596256) Mouse DNA sequence from clone RP23-259D24 on chro... 48 0.43 1
(AL133401) Mouse DNA sequence from clone RP21-72L18 on chrom... 48 0.43 1
(AF306315) Mus musculus paired-like homeodomain transcriptio... 48 0.43 1
(AF224268) Mus musculus 5' flanking region of Pitx3 gene. 48 0.43 1
(AC166816) Mus musculus chromosome 5, clone RP24-321O22, com... 48 0.43 1
(AC165153) Mus musculus BAC clone RP23-359L1 from chromosome... 48 0.43 1
(AC165091) Mus musculus BAC clone RP23-25M19 from chromosome... 48 0.43 1
(AC164166) Mus musculus BAC clone RP23-88C18 from chromosome... 48 0.43 1
(AC164096) Mus musculus BAC clone RP23-356H17 from chromosom... 48 0.43 1
(AC164011) Mus musculus chromosome 18, clone RP24-190N20, co... 48 0.43 1
(AC164005) Mus musculus chromosome 1, clone RP24-312J21, com... 48 0.43 1
(AC158534) Mus musculus BAC clone RP23-32O6 from chromosome ... 48 0.43 1
(AC158521) Mus musculus BAC clone RP23-404M10 from chromosom... 48 0.43 1
(AC158132) Mus musculus chromosome 1, clone RP23-11K8, compl... 48 0.43 1
(AC157545) Mus musculus chromosome 1, clone RP23-317L18, com... 48 0.43 1
(AC156548) Mus musculus chromosome 5, clone RP23-412C8, comp... 48 0.43 1
(AC155718) Mus musculus 10 BAC RP24-217J7 (Roswell Park Canc... 48 0.43 1
(AC154827) Mus musculus BAC clone RP24-546P18 from chromosom... 48 0.43 1
(AC154668) Mus musculus BAC clone RP24-285D22 from 13, compl... 48 0.43 1
(AC146344) Mus musculus strain C57BL/6J clone rp23-74a5, com... 48 0.43 1
(AC145569) Mus musculus BAC clone RP24-89N16 from chromosome... 48 0.43 1
(AC142408) Mus musculus BAC clone RP24-342F15 from 1, comple... 48 0.43 1
(AC140266) Mus musculus BAC clone RP24-300H3 from 7, complet... 48 0.43 1
(AC140233) Mus musculus BAC clone RP23-282N19 from chromosom... 48 0.43 1
(AC140184) Mus musculus BAC clone RP24-354G1 from chromosome... 48 0.43 1
(AC139335) Mus musculus BAC clone RP23-376N11 from chromosom... 48 0.43 1
(AC139062) Mus musculus chromosome 17, clone RP23-69L11, com... 48 0.43 1
(AC138587) Mus musculus chromosome 9, clone RP24-160H16, com... 48 0.43 1
(AC133459) Mus musculus chromosome 12, clone RP23-383O15, co... 48 0.43 1
(AC133183) Mus musculus BAC clone RP24-185O19 from chromosom... 48 0.43 1
(AC132458) Mus musculus BAC clone RP23-152C8 from chromosome... 48 0.43 1
(AC132132) Mus musculus BAC clone RP23-235K2 from 8, complet... 48 0.43 1
(AC131763) Mus musculus BAC clone RP24-231M1 from chromosome... 48 0.43 1
(AC129609) Mus musculus BAC clone RP23-194H4 from chromosome... 48 0.43 1
(AC129309) Mus musculus BAC clone RP24-343P24 from 17, compl... 48 0.43 1
(AC129018) Mus musculus BAC clone RP24-463L19 from chromosom... 48 0.43 1
(AC128670) Mus musculus BAC clone RP23-137H4 from chromosome... 48 0.43 1
(AC127586) Mus musculus BAC clone RP24-142A16 from chromosom... 48 0.43 1
(AC126677) Mus musculus BAC clone RP24-156D14 from chromosom... 48 0.43 1
(AC126552) Mus musculus BAC clone RP23-342F3 from chromosome... 48 0.43 1
(AC125192) Mus musculus BAC clone RP23-266B4 from chromosome... 48 0.43 1
(AC125071) Mus musculus BAC clone RP23-453O8 from chromosome... 48 0.43 1
(AC125065) Mus musculus BAC clone RP23-430G6 from chromosome... 48 0.43 1
(AC125057) Mus musculus BAC clone RP23-399K1 from chromosome... 48 0.43 1
(AC124710) Mus musculus BAC clone RP24-92A2 from chromosome ... 48 0.43 1
(AC123835) Mus musculus BAC clone RP23-365J20 from chromosom... 48 0.43 1
(AC122538) Mus musculus BAC clone RP24-548J11 from 16, compl... 48 0.43 1
(AC122312) Mus musculus BAC clone RP23-298K16 from 19, compl... 48 0.43 1
(AC122227) Mus musculus BAC clone RP23-131H10 from chromosom... 48 0.43 1
(AC121916) Mus musculus BAC clone RP24-192K21 from chromosom... 48 0.43 1
(AC121868) Mus musculus BAC clone RP24-116H17 from 1, comple... 48 0.43 1
(AC121149) Mus musculus chromosome 3, clone RP24-383A4, comp... 48 0.43 1
(AC118620) Mus musculus chromosome 3, clone RP24-571H24, com... 48 0.43 1
(AC117229) Mus musculus BAC clone RP23-380M1 from chromosome... 48 0.43 1
(AC116800) Mus musculus chromosome 8, clone RP24-335D17, com... 48 0.43 1
(AC115751) Mus musculus chromosome 1, clone RP23-16I21, comp... 48 0.43 1
(AC114542) Mus musculus chromosome 9, clone RP23-111F9, comp... 48 0.43 1
(AC111734) Rattus norvegicus NOVECTOR CH230-184H10 (Childre... 48 0.43 1
(AC110521) Mus musculus chromosome 12, clone RP23-50H15, com... 48 0.43 1
(AC110377) Mus musculus BAC clone RP23-460A13 from chromosom... 48 0.43 1
(AC109271) Mus musculus chromosome 1, clone RP23-353I19, com... 48 0.43 1
(AC108391) Mus musculus chromosome 1, clone RP23-16N14, comp... 48 0.43 1
(AC107673) Mus musculus chromosome 1, clone RP24-263O21, com... 48 0.43 1
(AC105155) Mus musculus chromosome 3, clone RP24-346C8, comp... 48 0.43 1
(AC102609) Mus musculus, clone RP23-403I3, complete sequence. 48 0.43 1
(AC102157) Mus musculus chromosome 1, clone RP23-393K4, comp... 48 0.43 1
(AC101911) Mus musculus chromosome 19, clone RP24-374E20, co... 48 0.43 1
(AC101859) Mus musculus chromosome 1, clone RP23-309H12, com... 48 0.43 1
(AC101663) Mus musculus chromosome 1, clone RP23-37L1, compl... 48 0.43 1
(AC101229) Mus musculus chromosome 8, clone RP23-96L20, comp... 48 0.43 1
(AC100427) Mus musculus chromosome 10, clone RP23-136J15, co... 48 0.43 1
(AC098744) Mus musculus BAC clone RP23-122P15 from 8, comple... 48 0.43 1
(AC096625) Mus musculus strain C57BL/6J clone rp23-388i7 map... 48 0.43 1
(AC023173) Mus musculus strain C57BL6/J chromosome 6 clone R... 48 0.43 1
(AB042280) Mus musculus MYPT1 gene, partial cds, promoter re... 48 0.43 1
(AC202412) Pongo abelii BAC clone CH276-412I16 from chromoso... 48 0.43 1
(U18779) Saccharomyces cerevisiae chromosome V cosmid 8199, ... 48 0.43 1
(S66130) UTR2 [Saccharomyces cerevisiae, mRNA, 1664 nt]. 48 0.43 1
(S65964) ARC: TIF51A...UTR2 [Saccharomyces cerevisiae, Genom... 48 0.43 1
(L22173) Saccharomyces cerevisiae aminonitrophenyl propanedi... 48 0.43 1
(FM992695) Candida dubliniensis CD36 chromosome R, complete ... 48 0.43 1
(FM992692) Candida dubliniensis CD36 chromosome 5, complete ... 48 0.43 1
(FM992691) Candida dubliniensis CD36 chromosome 4, complete ... 48 0.43 1
(FM992690) Candida dubliniensis CD36 chromosome 3, complete ... 48 0.43 1
(FM992689) Candida dubliniensis CD36 chromosome 2, complete ... 48 0.43 1
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ... 48 0.43 1
(FJ862824) Citrullus lanatus clone A28 microsatellite sequence. 48 0.43 1
(FJ389026) Eremophila glabra subsp. glabra clone EG309 micro... 48 0.43 1
(EU888141) Capsicum frutescens clone CFG6 microsatellite seq... 48 0.43 1
(EU699745) Eucalyptus globulus clone sEgl061 microsatellite ... 48 0.43 1
(EU351128) Arabidopsis thaliana ecotype Mt-0 At1g67140 gene,... 48 0.43 1
(EU351127) Arabidopsis thaliana ecotype Gr-3 At1g67140 gene,... 48 0.43 1
(EU351126) Arabidopsis thaliana ecotype Co-1 At1g67140 gene,... 48 0.43 1
(EU351125) Arabidopsis thaliana ecotype Chi-1 At1g67140 gene... 48 0.43 1
(EU351124) Arabidopsis thaliana ecotype Bla-10 At1g67140 gen... 48 0.43 1
(EU351123) Arabidopsis thaliana ecotype Sha At1g67140 gene, ... 48 0.43 1
(EU351122) Arabidopsis thaliana ecotype PHW-32 At1g67140 gen... 48 0.43 1
(EU351121) Arabidopsis thaliana ecotype PHW-1 At1g67140 gene... 48 0.43 1
(EU351120) Arabidopsis thaliana ecotype Li-3 At1g67140 gene,... 48 0.43 1
(EU351119) Arabidopsis thaliana ecotype Da (1)-12 At1g67140 ... 48 0.43 1
(EU351118) Arabidopsis thaliana ecotype Di-G At1g67140 gene,... 48 0.43 1
(EU351117) Arabidopsis thaliana ecotype Cvi-0 At1g67140 gene... 48 0.43 1
(EU351116) Arabidopsis thaliana ecotype Landsberg erecta At1... 48 0.43 1
(EU351115) Arabidopsis thaliana ecotype Col-0 At1g67140 gene... 48 0.43 1
(EF988090) Oenothera biennis clone Oenbi39tri4 microsatellit... 48 0.43 1
(EF614149) Ardisia crenata microsatellite Ac61 sequence. 48 0.43 1
(EF567413) Diospyros kaki clone mDP20 microsatellite sequence. 48 0.43 1
(EF567396) Diospyros kaki clone mDP01 microsatellite sequence. 48 0.43 1
(EF463015) Chamaedorea elegans clone 15H12 microsatellite se... 48 0.43 1
(EF375989) Nicotiana tabacum microsatellite A67 sequence. 48 0.43 1
(EF216578) Phytophthora ramorum strain SCRP911 clone S21-22(... 48 0.43 1
(EF216577) Phytophthora sojae strain SCRP555 clone S21-22(P2... 48 0.43 1
(EF148097) Populus trichocarpa clone WS0127_I14 unknown mRNA. 48 0.43 1
(EF117786) Amaranthus hypochondriacus clone GB-AMM-099 micro... 48 0.43 1
(DQ512881) Thalassia testudinum microsatellite TTMS-TCT58 se... 48 0.43 1
(DQ297407) Hordeum vulgare subsp. vulgare FT-like protein (F... 48 0.43 1
(DQ110141) Hymenocallis coronaria microsatellite HcoD12 sequ... 48 0.43 1
(DQ099052) Arachis stenosperma clone AS1RN0x729 microsatelli... 48 0.43 1
(CU633899) Podospora anserina genomic DNA chromosome 1, supe... 48 0.43 1
(CU326400) S.lycopersicum DNA sequence from clone SL_MboI-39... 48 0.43 1
(CU302330) Medicago truncatula chromosome 5 clone mte1-65b11... 48 0.43 1
(CU075534) M.truncatula DNA sequence from clone MTH2-29A6 on... 48 0.43 1
(CT837938) Oryza sativa (indica cultivar-group) cDNA clone:O... 48 0.43 1
(CT837937) Oryza sativa (indica cultivar-group) cDNA clone:O... 48 0.43 1
(CT833063) Oryza sativa (indica cultivar-group) cDNA clone:O... 48 0.43 1
(CT025842) Medicago truncatula chromosome 5 clone mth2-54i22... 48 0.43 1
(CT010521) M.truncatula DNA sequence from clone MTH2-34D24 o... 48 0.43 1
(CT009656) Medicago truncatula chromosome 5 clone mth2-154o1... 48 0.43 1
(CR382139) Debaryomyces hansenii strain CBS767 chromosome G ... 48 0.43 1
(CR382127) Yarrowia lipolytica strain CLIB122 chromosome A c... 48 0.43 1
(CR382124) Kluyveromyces lactis strain NRRL Y-1140 chromosom... 48 0.43 1
(CP000496) Pichia stipitis CBS 6054 chromosome 2, complete s... 48 0.43 1
(BX294024) Neurospora crassa DNA linkage group V Cosmid cont... 48 0.43 1
(BX284750) Neurospora crassa DNA linkage group II BAC clone ... 48 0.43 1
(BT005437) Arabidopsis thaliana clone U50578 unknown protein... 48 0.43 1
(BT001916) Arabidopsis thaliana clone C105157 putative APETA... 48 0.43 1
(AY918931) Schoenoplectus americanus clone SCAM.01 microsate... 48 0.43 1
(AY693014) Saccharomyces cerevisiae clone FLH158338.01X YEL0... 48 0.43 1
(AY486733) Hevea brasiliensis clone gHbCIRA2493 microsatelli... 48 0.43 1
(AY193644) Lactuca saligna clone LC14 resistance protein RGC... 48 0.43 1
(AY193547) Lactuca sativa clone TDP resistance protein candi... 48 0.43 1
(AY193523) Lactuca saligna clone LA6 resistance protein RGC2... 48 0.43 1
(AY193499) Lactuca serriola clone KA69 resistance protein RG... 48 0.43 1
(AY193497) Lactuca serriola clone K2401 resistance protein R... 48 0.43 1
(AY193496) Lactuca serriola clone KT133 resistance protein R... 48 0.43 1
(AY193494) Lactuca serriola clone K2296 resistance protein R... 48 0.43 1
(AY193493) Lactuca serriola clone KT124 resistance protein R... 48 0.43 1
(AY193492) Lactuca serriola clone KT128 resistance protein R... 48 0.43 1
(AY193491) Lactuca serriola clone K2497 resistance protein R... 48 0.43 1
(AY193487) Lactuca serriola clone KT46 resistance protein RG... 48 0.43 1
(AY193486) Lactuca serriola clone KT10 resistance protein RG... 48 0.43 1
(AY140496) Arabidopsis thaliana clone P2WB1-E05-6092 unknown... 48 0.43 1
(AY140495) Arabidopsis thaliana clone P2WB1-E05-6054 unknown... 48 0.43 1
(AY140494) Arabidopsis thaliana clone P2WB1-E05-1248 unknown... 48 0.43 1
(AY140493) Arabidopsis thaliana clone P2WB1-E05-1220 unknown... 48 0.43 1
(AY140492) Arabidopsis thaliana clone P2WB1-E05-1074 unknown... 48 0.43 1
(AY140491) Arabidopsis thaliana clone P2WB1-E05-1006 unknown... 48 0.43 1
(AY140490) Arabidopsis thaliana clone P2WB1-E05-970 unknown ... 48 0.43 1
(AY140489) Arabidopsis thaliana clone P2WB1-E05-996 unknown ... 48 0.43 1
(AY074373) Arabidopsis thaliana At5g60120 mRNA sequence. 48 0.43 1
(AY023697) Oryza sativa microsatellite MRG6022 containing (A... 48 0.43 1
(AY023483) Oryza sativa microsatellite MRG5808 containing (T... 48 0.43 1
(AY023479) Oryza sativa microsatellite MRG5804 containing (T... 48 0.43 1
(AY023441) Oryza sativa microsatellite MRG5766 containing (T... 48 0.43 1
(AY023333) Oryza sativa microsatellite MRG5658 containing (G... 48 0.43 1
(AY022552) Oryza sativa microsatellite MRG4877 containing (A... 48 0.43 1
(AY022325) Oryza sativa microsatellite MRG4650 containing (A... 48 0.43 1
(AP010579) Lotus japonicus genomic DNA, clone: LjT06N24, TM1... 48 0.43 1
(AP010372) Lotus japonicus genomic DNA, chromosome 1, clone:... 48 0.43 1
(AP009756) Lotus japonicus genomic DNA, clone: LjT38B21, TM1... 48 0.43 1
(AP009735) Lotus japonicus genomic DNA, clone: LjT37E04, TM1... 48 0.43 1
(AP009544) Lotus japonicus genomic DNA, chromosome 2, clone:... 48 0.43 1
(AP008218) Oryza sativa (japonica cultivar-group) genomic DN... 48 0.43 1
(AP008215) Oryza sativa (japonica cultivar-group) genomic DN... 48 0.43 1
(AP008213) Oryza sativa (japonica cultivar-group) genomic DN... 48 0.43 1
(AP008211) Oryza sativa (japonica cultivar-group) genomic DN... 48 0.43 1
(AP008208) Oryza sativa (japonica cultivar-group) genomic DN... 48 0.43 1
(AP006500) Cyanidioschyzon merolae DNA, chromosome 18, compl... 48 0.43 1
(AP006485) Cyanidioschyzon merolae DNA, chromosome 3, comple... 48 0.43 1
(AP005637) Oryza sativa Japonica Group genomic DNA, chromoso... 48 0.43 1
(AP005452) Oryza sativa Japonica Group genomic DNA, chromoso... 48 0.43 1
(AP004847) Oryza sativa Japonica Group genomic DNA, chromoso... 48 0.43 1
(AP004536) Lotus japonicus genomic DNA, chromosome 4, clone:... 48 0.43 1
(AP004525) Lotus japonicus genomic DNA, chromosome 5, clone:... 48 0.43 1
(AP004523) Lotus japonicus genomic DNA, chromosome 1, clone:... 48 0.43 1
(AM989989) Zygosaccharomyces rouxii strain CBS 732 Contig10. 48 0.43 1
(AM487196) Vitis vinifera, whole genome shotgun sequence, co... 48 0.43 1
(AM483510) Vitis vinifera contig VV78X174222.12, whole genom... 48 0.43 1
(AM466336) Vitis vinifera contig VV78X161177.4, whole genome... 48 0.43 1
(AM465590) Vitis vinifera contig VV78X069536.7, whole genome... 48 0.43 1
(AM461037) Vitis vinifera contig VV78X098785.8, whole genome... 48 0.43 1
(AM459941) Vitis vinifera contig VV78X193757.4, whole genome... 48 0.43 1
(AM459497) Vitis vinifera contig VV78X078665.6, whole genome... 48 0.43 1
(AM458895) Vitis vinifera, whole genome shotgun sequence, co... 48 0.43 1
(AM456989) Vitis vinifera contig VV78X104387.6, whole genome... 48 0.43 1
(AM450603) Vitis vinifera contig VV78X029942.11, whole genom... 48 0.43 1
(AM447150) Vitis vinifera, whole genome shotgun sequence, co... 48 0.43 1
(AM446906) Vitis vinifera contig VV78X112185.9, whole genome... 48 0.43 1
(AM441575) Vitis vinifera, whole genome shotgun sequence, co... 48 0.43 1
(AM439618) Vitis vinifera contig VV78X085603.2, whole genome... 48 0.43 1
(AM434041) Vitis vinifera contig VV78X002163.19, whole genom... 48 0.43 1
(AM428739) Vitis vinifera contig VV78X124967.7, whole genome... 48 0.43 1
(AM428347) Vitis vinifera contig VV78X095083.13, whole genom... 48 0.43 1
(AM424555) Vitis vinifera contig VV78X249011.3, whole genome... 48 0.43 1
(AL669993) Neurospora crassa DNA linkage group II BAC clone ... 48 0.43 1
(AL513444) Neurospora crassa DNA linkage group V BAC contig ... 48 0.43 1
(AL451013) Neurospora crassa DNA linkage group V BAC clone B... 48 0.43 1
(AL356173) Neurospora crassa DNA linkage group II BAC contig... 48 0.43 1
(AK229024) Arabidopsis thaliana mRNA for hypothetical protei... 48 0.43 1
(AK228464) Arabidopsis thaliana mRNA for protein kinase (F21... 48 0.43 1
(AK117472) Arabidopsis thaliana At2g30280 mRNA for unknown p... 48 0.43 1
(AK111217) Oryza sativa Japonica Group cDNA clone:002-179-B0... 48 0.43 1
(AK101654) Oryza sativa Japonica Group cDNA clone:J033057E24... 48 0.43 1
(AK067082) Oryza sativa Japonica Group cDNA clone:J013096E12... 48 0.43 1
(AK066483) Oryza sativa Japonica Group cDNA clone:J013070M16... 48 0.43 1
(AK062323) Oryza sativa Japonica Group cDNA clone:001-101-D0... 48 0.43 1
(AJ841947) Ricinus communis mRNA for hypothetical protein (O... 48 0.43 1
(AF351538) Gossypium hirsutum clone JESPR300 microsatellite ... 48 0.43 1
(AF072272) Lactuca sativa resistance protein candidate RGC2K... 48 0.43 1
(AF061282) Sorghum bicolor 22 kDa kafirin cluster. 48 0.43 1
(AC235234) Glycine max strain Williams 82 clone GM_WBb0028B2... 48 0.43 1
(AC232776) Solanum lycopersicum chromosome 2 clone C02SLm013... 48 0.43 1
(AC217588) Populus trichocarpa clone POP047-P10, complete se... 48 0.43 1
(AC216459) Populus trichocarpa clone POP074-L11, complete se... 48 0.43 1
(AC214625) Populus trichocarpa clone POP008-A22, complete se... 48 0.43 1
(AC214282) Populus trichocarpa clone POP018-K04, complete se... 48 0.43 1
(AC213429) Populus trichocarpa clone POP097-P07, complete se... 48 0.43 1
(AC213154) Populus trichocarpa clone POP059-F03, complete se... 48 0.43 1
(AC211307) Populus trichocarpa clone POP006-B16, complete se... 48 0.43 1
(AC210135) Populus trichocarpa clone POP101-G08, complete se... 48 0.43 1
(AC203075) Populus trichocarpa clone Pop1-112P9, complete se... 48 0.43 1
(AC184061) Populus trichocarpa clone Pop1-106E19, complete s... 48 0.43 1
(AC182671) Populus trichocarpa clone Pop1-24F1, complete seq... 48 0.43 1
(AC159124) Medicago truncatula clone mth2-172h20, complete s... 48 0.43 1
(AC154900) Prunus persica (peach) BAC clone 28F08, complete ... 48 0.43 1
(AC149307) Medicago truncatula chromosome 8 clone mth2-91a15... 48 0.43 1
(AC149207) Medicago truncatula chromosome 2 clone mte1-60l24... 48 0.43 1
(AC148918) Medicago truncatula chromosome 2 clone mth2-44o11... 48 0.43 1
(AC147499) Medicago truncatula chromosome 6 clone mth2-22h5,... 48 0.43 1
(AC147498) Medicago truncatula chromosome 6 clone mth2-6f18,... 48 0.43 1
(AC146749) Medicago truncatula chromosome 8 clone mth2-145a1... 48 0.43 1
(AC146719) Medicago truncatula clone mth2-17f11, complete se... 48 0.43 1
(AC144342) Medicago truncatula clone mth2-10n2, complete seq... 48 0.43 1
(AC130598) Oryza sativa Japonica Group chromosome 5 clone OS... 48 0.43 1
(AC124960) Medicago truncatula clone mth2-26j24, complete se... 48 0.43 1

>(AC116305) Dictyostelium discoideum chromosome 2 map 1005175-1418323
strain AX4, complete sequence.
Length = 413138

Score = 613 bits (309), Expect(4) = 0.0
Identities = 309/309 (100%)
Strand = Plus / Minus


Query: 1 aaatgacaagtgcacaaccaaaagcagttgatgtttcaactatacctggatttaaaaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337651 aaatgacaagtgcacaaccaaaagcagttgatgtttcaactatacctggatttaaaaaat 337592


Query: 61 ggtatattgtatatccaaaccatataaatagtgaacttacaaaagaaaaaggtagaaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337591 ggtatattgtatatccaaaccatataaatagtgaacttacaaaagaaaaaggtagaaagg 337532


Query: 121 tatcaaaagagcatggtgtcaaaaacccaacattaccagaaatagcagaagcaacagctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337531 tatcaaaagagcatggtgtcaaaaacccaacattaccagaaatagcagaagcaacagctc 337472


Query: 181 aattgggtttaccttgtattattgaaacgtctaaaggttatccaaaagaattctttttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337471 aattgggtttaccttgtattattgaaacgtctaaaggttatccaaaagaattctttttaa 337412


Query: 241 gaggtagacttagaattaactttttctgtgatggtacaacaatgccaagaaatcctcata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337411 gaggtagacttagaattaactttttctgtgatggtacaacaatgccaagaaatcctcata 337352


Query: 301 ttccaaata 309
|||||||||
Sbjct: 337351 ttccaaata 337343

Score = 208 bits (105), Expect(4) = 0.0
Identities = 105/105 (100%)
Strand = Plus / Minus


Query: 310 aaactgtattattagttaaaatagcagaaagaattaaattaataaatccaaatagaccag 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337160 aaactgtattattagttaaaatagcagaaagaattaaattaataaatccaaatagaccag 337101


Query: 370 aaccatttaatccaatatcaatgttagcaccaattcaagcagttt 414
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337100 aaccatttaatccaatatcaatgttagcaccaattcaagcagttt 337056

Score = 121 bits (61), Expect(4) = 0.0
Identities = 61/61 (100%)
Strand = Plus / Minus


Query: 477 tcatcatcatcttcttcttcttctaaaggtggaaagaaaaagaagaatgtgaatgtaatt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336993 tcatcatcatcttcttcttcttctaaaggtggaaagaaaaagaagaatgtgaatgtaatt 336934


Query: 537 t 537
|
Sbjct: 336933 t 336933

Score = 60.0 bits (30), Expect(4) = 0.0
Identities = 30/30 (100%)
Strand = Plus / Minus


Query: 604 cgcaacataggatggttctataatttcttt 633
||||||||||||||||||||||||||||||
Sbjct: 336866 cgcaacataggatggttctataatttcttt 336837

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 790,260,370
Number of extensions: 59691332
Number of successful extensions: 7973766
Number of sequences better than 10.0: 5300
Length of query: 645
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 621
Effective length of database: 102,084,959,077
Effective search space: 63394759586817
Effective search space used: 63394759586817
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 8. 1
Homology vs Protein
Query= Contig-U05245-1 (Contig-U05245-1Q) /CSM_Contig/Contig-U05245-1Q.Seq.d
(645 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC116305_121(AC116305|pid:none) Dictyostelium discoideum chromos... 280 2e-74
AE017350_217(AE017350|pid:none) Cryptococcus neoformans var. neo... 77 3e-13
(Q943Z6) RecName: Full=Signal recognition particle 19 kDa protei... 77 4e-13
BT037496_1(BT037496|pid:none) Zea mays full-length cDNA clone ZM... 75 2e-12
AC023673_11(AC023673|pid:none) Genomic sequence for Arabidopsis ... 65 2e-09
CU928167_169(CU928167|pid:none) Kluyveromyces thermotolerans str... 63 8e-09
(O61749) RecName: Full=Probable signal recognition particle 19 k... 62 1e-08
CR940347_1000(CR940347|pid:none) Theileria annulata strain Ankar... 62 2e-08
AY138586_1(AY138586|pid:none) Synthetic construct signal recogni... 61 2e-08
(O13475) RecName: Full=Signal recognition particle SEC65 subunit... 60 4e-08
(O14415) RecName: Full=Signal recognition particle SEC65 subunit... 60 5e-08
AY814496_1(AY814496|pid:none) Schistosoma japonicum SJCHGC02662 ... 60 5e-08
FN319307_1(FN319307|pid:none) Schistosoma japonicum isolate Anhu... 60 7e-08
FN357340_13(FN357340|pid:none) Schistosoma mansoni genome sequen... 60 7e-08
AJ001358_2(AJ001358|pid:none) Kluyveromyces lactis URA5 gene. 59 2e-07
(Q3IPF4) RecName: Full=Signal recognition particle 19 kDa protei... 59 2e-07
FN392321_549(FN392321|pid:none) Pichia pastoris GS115 chromosome... 58 2e-07
CP001574_702(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 58 3e-07
FM992695_151(FM992695|pid:none) Candida dubliniensis CD36 chromo... 57 5e-07
(P29478) RecName: Full=Signal recognition particle subunit SEC65... 57 5e-07
DQ443211_1(DQ443211|pid:none) Bombyx mori signal recognition par... 57 5e-07
EU930203_1(EU930203|pid:none) Simulium vittatum clone SV-102 sig... 57 6e-07
(Q5V5S9) RecName: Full=Signal recognition particle 19 kDa protei... 56 8e-07
EF639082_1(EF639082|pid:none) Triatoma infestans clone tin-146 s... 55 1e-06
BX538351_1(BX538351|pid:none) Cryptosporidium parvum chromosome ... 55 2e-06
AK341334_1(AK341334|pid:none) Acyrthosiphon pisum ACYPI002245 mR... 55 2e-06
CP000581_43(CP000581|pid:none) Ostreococcus lucimarinus CCE9901 ... 55 2e-06
BT078366_1(BT078366|pid:none) Lepeophtheirus salmonis Pacific fo... 54 3e-06
(Q6LY84) RecName: Full=Signal recognition particle 19 kDa protei... 54 4e-06
CU928179_569(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 54 4e-06
(Q6BM93) RecName: Full=Signal recognition particle SEC65 subunit... 53 7e-06
AM494956_186(AM494956|pid:none) Leishmania braziliensis chromoso... 52 1e-05
(A4FX62) RecName: Full=Signal recognition particle 19 kDa protei... 52 1e-05
(A6VG52) RecName: Full=Signal recognition particle 19 kDa protei... 52 1e-05
AM502237_152(AM502237|pid:none) Leishmania infantum chromosome 19. 51 3e-05
BT079486_1(BT079486|pid:none) Esox lucius clone eluc-evq-526-226... 50 4e-05
(A3DNY0) RecName: Full=Signal recognition particle 19 kDa protei... 50 6e-05
FN319305_1(FN319305|pid:none) Schistosoma japonicum isolate Anhu... 50 7e-05
(A0B5U7) RecName: Full=Signal recognition particle 19 kDa protei... 50 7e-05
(Q756H7) RecName: Full=Signal recognition particle SEC65 subunit... 50 7e-05
CP000477_268(CP000477|pid:none) Methanosaeta thermophila PT, com... 50 7e-05
(Q8PWM7) RecName: Full=Signal recognition particle 19 kDa protei... 49 1e-04
BT047924_1(BT047924|pid:none) Salmo salar clone ssal-evf-521-030... 49 1e-04
BT050153_1(BT050153|pid:none) Salmo salar clone ssal-eve-513-050... 49 1e-04
BT074695_1(BT074695|pid:none) Osmerus mordax clone omor-eva-505-... 49 2e-04
BT074270_1(BT074270|pid:none) Oncorhynchus mykiss clone omyk-evo... 48 2e-04
BC084166_1(BC084166|pid:none) Xenopus laevis hypothetical LOC495... 48 2e-04
(Q46D06) RecName: Full=Signal recognition particle 19 kDa protei... 48 2e-04
(Q2NF32) RecName: Full=Signal recognition particle 19 kDa protei... 48 2e-04
BC053168_1(BC053168|pid:none) Danio rerio signal recognition par... 48 3e-04
BT047882_1(BT047882|pid:none) Salmo salar clone ssal-eve-559-281... 48 3e-04
CP001140_922(CP001140|pid:none) Desulfurococcus kamchatkensis 12... 48 3e-04
CP000499_206(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 48 3e-04
BC084521_1(BC084521|pid:none) Xenopus tropicalis signal recognit... 48 3e-04
(Q8TV49) RecName: Full=Signal recognition particle 19 kDa protei... 47 4e-04
(A6UPB8) RecName: Full=Signal recognition particle 19 kDa protei... 47 5e-04
AK010760_1(AK010760|pid:none) Mus musculus ES cells cDNA, RIKEN ... 47 6e-04
(Q3ZBG7) RecName: Full=Signal recognition particle 19 kDa protei... 47 6e-04
AE010299_291(AE010299|pid:none) Methanosarcina acetivorans str. ... 47 6e-04
(Q8TTY3) RecName: Full=Signal recognition particle 19 kDa protei... 47 6e-04
AK004118_1(AK004118|pid:none) Mus musculus 18-day embryo whole b... 47 6e-04
BC167043_1(BC167043|pid:none) Rattus norvegicus signal recogniti... 46 8e-04
(Q8SRC3) RecName: Full=Signal recognition particle SEC65 subunit... 46 8e-04
CP000968_1494(CP000968|pid:none) Candidatus Korarchaeum cryptofi... 46 0.001
(A5UNC8) RecName: Full=Signal recognition particle 19 kDa protei... 46 0.001
BC017830_1(BC017830|pid:none) Homo sapiens signal recognition pa... 45 0.001
CR858577_1(CR858577|pid:none) Pongo abelii mRNA; cDNA DKFZp469K1... 45 0.001
AX885242_1(AX885242|pid:none) Sequence 1105 from Patent EP1033401. 45 0.001
(P09132) RecName: Full=Signal recognition particle 19 kDa protei... 45 0.001
(O26267) RecName: Full=Signal recognition particle 19 kDa protei... 44 0.003
(Q58440) RecName: Full=Signal recognition particle 19 kDa protei... 44 0.004
AY574390_1(AY574390|pid:none) Trypanosoma brucei signal recognit... 44 0.004
(B0R5G1) RecName: Full=Signal recognition particle 19 kDa protei... 44 0.004
CP001463_914(CP001463|pid:none) Thermococcus sibiricus MM 739, c... 41 0.034
(A2BJ20) RecName: Full=Signal recognition particle 19 kDa protei... 41 0.034
EU016628_14(EU016628|pid:none) Uncultured Group I marine crenarc... 40 0.045
(Q5JGS5) RecName: Full=Signal recognition particle 19 kDa protei... 40 0.077
GM015893_215(GM015893|pid:none) Sequence 723 from Patent EP19234... 40 0.077
(O29010) RecName: Full=Signal recognition particle 19 kDa protei... 39 0.13
CP000562_469(CP000562|pid:none) Methanoculleus marisnigri JR1, c... 37 0.38
T33052(T33052)hypothetical protein F37F2.2 - Caenorhabditis eleg... 37 0.50
(A7IAR2) RecName: Full=Signal recognition particle 19 kDa protei... 37 0.65
(A3MWY1) RecName: Full=Signal recognition particle 19 kDa protei... 36 0.85
CP000866_515(CP000866|pid:none) Nitrosopumilus maritimus SCM1, c... 36 1.1
CP000513_659(CP000513|pid:none) Dichelobacter nodosus VCS1703A, ... 36 1.1
EU973246_1(EU973246|pid:none) Zea mays clone 395404 unknown mRNA. 36 1.1
(O74102) RecName: Full=Signal recognition particle 19 kDa protei... 35 1.9
U63512_1(U63512|pid:none) Bovine viral diarrhea virus cytopathog... 34 3.2
(A1RS22) RecName: Full=Signal recognition particle 19 kDa protei... 34 4.2
AM420293_6835(AM420293|pid:none) Saccharopolyspora erythraea NRR... 34 4.2
AE006641_1711(AE006641|pid:none) Sulfolobus solfataricus P2, com... 34 4.2
AB111961_1(AB111961|pid:none) Bovine viral diarrhea virus 799ncp... 33 5.5
AB111962_1(AB111962|pid:none) Bovine viral diarrhea virus 799cp ... 33 5.5
AJ238808_1(AJ238808|pid:none) pestivirus type 1 genomic RNA for ... 33 5.5
AJ238809_1(AJ238809|pid:none) pestivirus type 1 genomic RNA for ... 33 5.5
AJ238810_1(AJ238810|pid:none) pestivirus type 1 genomic RNA for ... 33 5.5
U63513_1(U63513|pid:none) Bovine viral diarrhea virus noncytopat... 33 5.5
CP001403_2591(CP001403|pid:none) Sulfolobus islandicus Y.G.57.14... 33 5.5
AJ238807_1(AJ238807|pid:none) pestivirus type 1 genomic RNA for ... 33 5.5
AJ238806_1(AJ238806|pid:none) pestivirus type 1 genomic RNA for ... 33 5.5
AJ133739_1(AJ133739|pid:none) Bovine viral diarrhea virus comple... 33 7.2
(Q01499) RecName: Full=Genome polyprotein; Contains: RecName: ... 33 7.2
L35849_1(L35849|pid:none) Bovine viral diarrhea virus (strain Dr... 33 7.2
(P19711) RecName: Full=Genome polyprotein; Contains: RecName: ... 33 7.2
GNWVBV(A29198;A61161)genome polyprotein - bovine viral diarrhea ... 33 7.2
L35852_1(L35852|pid:none) Bovine viral diarrhea virus (strain Si... 33 7.2
AJ133738_1(AJ133738|pid:none) Bovine viral diarrhea virus comple... 33 7.2
U86599_1(U86599|pid:none) Pestivirus type 1 cytopathic genomic R... 33 7.2
AJ781045_1(AJ781045|pid:none) Bovine viral diarrhea virus partia... 33 7.2
CP000076_3624(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 33 7.2
EU183197_1(EU183197|pid:none) Infectious marker vector pASD1-eGF... 33 7.2
AB111964_1(AB111964|pid:none) Bovine viral diarrhea virus 839cp ... 33 7.2
CP001402_2449(CP001402|pid:none) Sulfolobus islandicus M.16.4, c... 33 9.4
AJ544866_1(AJ544866|pid:none) Bovine viral diarrhea virus strain... 33 9.4
AJ238812_1(AJ238812|pid:none) pestivirus type 1 genomic RNA for ... 33 9.4
AJ585412_1(AJ585412|pid:none) Bovine viral diarrhea virus VEDEVA... 33 9.4

>AC116305_121(AC116305|pid:none) Dictyostelium discoideum chromosome
2 map 1005175-1418323 strain AX4, complete sequence.
Length = 170

Score = 280 bits (717), Expect = 2e-74
Identities = 138/147 (93%), Positives = 138/147 (93%)
Frame = +3

Query: 3 MTSAQPKAVDVSTIPGFKKWYIVYPNHINSELTKEKGRKVSKEHGVKNPTLPEIAEATAQ 182
MTSAQPKAVDVSTIPGFKKWYIVYPNHINSELTKEKGRKVSKEHGVKNPTLPEIAEATAQ
Sbjct: 1 MTSAQPKAVDVSTIPGFKKWYIVYPNHINSELTKEKGRKVSKEHGVKNPTLPEIAEATAQ 60

Query: 183 LGLPCIIETSKGYPKEFFLRGRLRINFFCDGTTMPRNPHIPNKTVLLVKIAERIKLINPN 362
LGLPCIIETSKGYPKEFFLRGRLRINFFCDGTTMPRNPHIPN ERIKLINPN
Sbjct: 61 LGLPCIIETSKGYPKEFFLRGRLRINFFCDGTTMPRNPHIPN--------TERIKLINPN 112

Query: 363 RPEPFNPISMLAPIQAVSQKEKKPAPQ 443
RPEPFNPISMLAPIQAVSQKEKKPAPQ
Sbjct: 113 RPEPFNPISMLAPIQAVSQKEKKPAPQ 139

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 789,532,876
Number of extensions: 14451818
Number of successful extensions: 37944
Number of sequences better than 10.0: 116
Number of HSP's gapped: 37926
Number of HSP's successfully gapped: 116
Length of query: 215
Length of database: 1,061,185,681
Length adjustment: 123
Effective length of query: 92
Effective length of database: 659,166,577
Effective search space: 60643325084
Effective search space used: 60643325084
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.79 gvh: 0.28 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: plasma membrane
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for Contig-U05245-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0