Contig-U05216-1
Contig ID Contig-U05216-1
Contig update 2001. 8.29
Contig sequence
>Contig-U05216-1 (Contig-U05216-1Q) /CSM_Contig/Contig-U05216-1Q.Seq.d
ACCATATCATGGCTTCCCAAGTTGGTGGAAAACTGGTACTCATGATATCT
CATTATTACAAGGTGTCTCTAAACATGGTTATTCTCAATATGAAGATATT
TGCAATGATCAATCATTACCATTCCATGAATTAGCTCAATCACTTCGTTT
AGATAAAGAAAAAGAAAAAGGAAGTGGTGGTGACAGTGGCGTTGATGATG
ATGCCTCTGATAAAAAGAGAAAGAGAAAAGAGAATATTTTAGATCTAATC
AATTTCCCAAAAGATAAATCAATTTCAAAACGTTTGGATTTTATTGTTTT
CTATGCTTTAAATCCACCAAAGCCACAATCTAAACATTCTGCTTTTGATA
AAATTTTATTACCAATTGATAGTGGTGATAATTCAAATATTCAAGATAAT
AATAATAATAATAATAATAATAATA

Gap no gap
Contig length 425
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3614317
End point 3613892
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U05216
List of clone(s)

est1=SSG304F,1,426
Translated Amino Acid sequence
PYHGFPSWWKTGTHDISLLQGVSKHGYSQYEDICNDQSLPFHELAQSLRLDKEKEKGSGG
DSGVDDDASDKKRKRKENILDLINFPKDKSISKRLDFIVFYALNPPKPQSKHSAFDKILL
PIDSGDNSNIQDNNNNNNNNN


Translated Amino Acid sequence (All Frames)
Frame A:
tiswlpklvenwys*yliitrcl*twlfsi*rylq*siitip*issitsfr*rkrkrkww
*qwr***cl**kekekreyfrsnqfpkr*infktfgfycflcfkstkati*tfcf**nfi
tn**w**fkysr*********


Frame B:
PYHGFPSWWKTGTHDISLLQGVSKHGYSQYEDICNDQSLPFHELAQSLRLDKEKEKGSGG
DSGVDDDASDKKRKRKENILDLINFPKDKSISKRLDFIVFYALNPPKPQSKHSAFDKILL
PIDSGDNSNIQDNNNNNNNNN


Frame C:
himasqvggklvlmishyykvslnmvilnmkifaminhyhsmn*lnhfv*ikkkkkevvv
tvalmmmplikrerekrif*i*sisqkinqfqnvwillfsml*ihqshnlnilllikfyy
qlivviiqifkiiiiiiiiii


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05216-1 (Contig-U05216-1Q)
/CSM_Contig/Contig-U05216-1Q.Seq.d
(425 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05216-1 (Contig-U05216-1Q) /CSM_Contig/Conti... 783 0.0
Contig-U06880-1 (Contig-U06880-1Q) /CSM_Contig/Conti... 46 3e-05
Contig-U11146-1 (Contig-U11146-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U09244-1 (Contig-U09244-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U04910-1 (Contig-U04910-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U12542-1 (Contig-U12542-1Q) /CSM_Contig/Conti... 38 0.007
Contig-U11064-1 (Contig-U11064-1Q) /CSM_Contig/Conti... 38 0.007
Contig-U11052-1 (Contig-U11052-1Q) /CSM_Contig/Conti... 38 0.007
Contig-U09009-1 (Contig-U09009-1Q) /CSM_Contig/Conti... 38 0.007
Contig-U00078-1 (Contig-U00078-1Q) /CSM_Contig/Conti... 38 0.007

>Contig-U05216-1 (Contig-U05216-1Q) /CSM_Contig/Contig-U05216-1Q.Seq.d
Length = 425

Score = 783 bits (395), Expect = 0.0
Identities = 395/395 (100%)
Strand = Plus / Plus


Query: 1 accatatcatggcttcccaagttggtggaaaactggtactcatgatatctcattattaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 accatatcatggcttcccaagttggtggaaaactggtactcatgatatctcattattaca 60


Query: 61 aggtgtctctaaacatggttattctcaatatgaagatatttgcaatgatcaatcattacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aggtgtctctaaacatggttattctcaatatgaagatatttgcaatgatcaatcattacc 120


Query: 121 attccatgaattagctcaatcacttcgtttagataaagaaaaagaaaaaggaagtggtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attccatgaattagctcaatcacttcgtttagataaagaaaaagaaaaaggaagtggtgg 180


Query: 181 tgacagtggcgttgatgatgatgcctctgataaaaagagaaagagaaaagagaatatttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgacagtggcgttgatgatgatgcctctgataaaaagagaaagagaaaagagaatatttt 240


Query: 241 agatctaatcaatttcccaaaagataaatcaatttcaaaacgtttggattttattgtttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agatctaatcaatttcccaaaagataaatcaatttcaaaacgtttggattttattgtttt 300


Query: 301 ctatgctttaaatccaccaaagccacaatctaaacattctgcttttgataaaattttatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctatgctttaaatccaccaaagccacaatctaaacattctgcttttgataaaattttatt 360


Query: 361 accaattgatagtggtgataattcaaatattcaag 395
|||||||||||||||||||||||||||||||||||
Sbjct: 361 accaattgatagtggtgataattcaaatattcaag 395


>Contig-U06880-1 (Contig-U06880-1Q) /CSM_Contig/Contig-U06880-1Q.Seq.d
Length = 217

Score = 46.1 bits (23), Expect = 3e-05
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 148 tttagataaagaaaaagaaaaag 170
|||||||||||||||||||||||
Sbjct: 85 tttagataaagaaaaagaaaaag 107


Score = 32.2 bits (16), Expect = 0.46
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 155 aaagaaaaagaaaaag 170
||||||||||||||||
Sbjct: 129 aaagaaaaagaaaaag 144


Score = 32.2 bits (16), Expect = 0.46
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 155 aaagaaaaagaaaaag 170
||||||||||||||||
Sbjct: 177 aaagaaaaagaaaaag 192


Score = 32.2 bits (16), Expect = 0.46
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 155 aaagaaaaagaaaaag 170
||||||||||||||||
Sbjct: 171 aaagaaaaagaaaaag 186


Score = 32.2 bits (16), Expect = 0.46
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 155 aaagaaaaagaaaaag 170
||||||||||||||||
Sbjct: 123 aaagaaaaagaaaaag 138


Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 156 aagaaaaagaaaaag 170
|||||||||||||||
Sbjct: 145 aagaaaaagaaaaag 159


Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 155 aaagaaaaagaaaaa 169
|||||||||||||||
Sbjct: 195 aaagaaaaagaaaaa 209


Score = 28.2 bits (14), Expect = 7.1
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 155 aaagaaaaagaaaa 168
||||||||||||||
Sbjct: 150 aaagaaaaagaaaa 163


>Contig-U11146-1 (Contig-U11146-1Q) /CSM_Contig/Contig-U11146-1Q.Seq.d
Length = 2547

Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 151 agataaagaaaaagaaaaag 170
||||||||||||||||||||
Sbjct: 405 agataaagaaaaagaaaaag 424


Score = 32.2 bits (16), Expect = 0.46
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 155 aaagaaaaagaaaaag 170
||||||||||||||||
Sbjct: 433 aaagaaaaagaaaaag 448


Score = 32.2 bits (16), Expect = 0.46
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 155 aaagaaaaagaaaaag 170
||||||||||||||||
Sbjct: 439 aaagaaaaagaaaaag 454


Score = 32.2 bits (16), Expect = 0.46
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 155 aaagaaaaagaaaaag 170
||||||||||||||||
Sbjct: 463 aaagaaaaagaaaaag 478


Score = 32.2 bits (16), Expect = 0.46
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 155 aaagaaaaagaaaaag 170
||||||||||||||||
Sbjct: 421 aaagaaaaagaaaaag 436


Score = 32.2 bits (16), Expect = 0.46
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 155 aaagaaaaagaaaaag 170
||||||||||||||||
Sbjct: 451 aaagaaaaagaaaaag 466


Score = 32.2 bits (16), Expect = 0.46
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 155 aaagaaaaagaaaaag 170
||||||||||||||||
Sbjct: 457 aaagaaaaagaaaaag 472


Score = 32.2 bits (16), Expect = 0.46
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 155 aaagaaaaagaaaaag 170
||||||||||||||||
Sbjct: 445 aaagaaaaagaaaaag 460


Score = 32.2 bits (16), Expect = 0.46
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 155 aaagaaaaagaaaaag 170
||||||||||||||||
Sbjct: 427 aaagaaaaagaaaaag 442


Score = 32.2 bits (16), Expect = 0.46
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 155 aaagaaaaagaaaaag 170
||||||||||||||||
Sbjct: 415 aaagaaaaagaaaaag 430


Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 155 aaagaaaaagaaaaa 169
|||||||||||||||
Sbjct: 469 aaagaaaaagaaaaa 483


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,819
Number of Sequences: 6905
Number of extensions: 10819
Number of successful extensions: 1610
Number of sequences better than 10.0: 476
length of query: 425
length of database: 5,674,871
effective HSP length: 16
effective length of query: 409
effective length of database: 5,564,391
effective search space: 2275835919
effective search space used: 2275835919
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7.14
Homology vs DNA
Query= Contig-U05216-1 (Contig-U05216-1Q) /CSM_Contig/Contig-U05216-1Q.Seq.d
(425 letters)

Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU073168) Dictyostelium discoideum slug cDNA, clone SSG304. 476 e-130 1
(AC127306) Mus musculus BAC clone RP23-290H17 from chromosom... 42 2e-05 2
(AC136712) Mus musculus chromosome 3, clone RP23-36H15, comp... 38 2e-04 2
(AC118258) Mus musculus clone RP24-312C3, WORKING DRAFT SEQU... 38 2e-04 2
(AC101282) Mus musculus clone RP23-102K17, LOW-PASS SEQUENCE... 38 2e-04 2
(BG611162) 602612131F1 NIH_MGC_60 Homo sapiens cDNA clone IM... 46 3e-04 2
(DE239129) Trifolium pratense DNA, clone:RCG37980. 40 7e-04 2
(AC023766) Homo sapiens chromosome 12 clone RP11-459A22 map ... 42 9e-04 2
(AL954869) Mouse DNA sequence from clone RP23-477I13 on chro... 40 9e-04 2
(AC168579) Strongylocentrotus purpuratus clone R3-3065H15, W... 40 9e-04 2
(AC079417) Mus musculus chromosome 16 clone RP23-102A24, WOR... 40 9e-04 2
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117... 40 9e-04 2
(AF361947) Dictyostelium discoideum SgcA (sgcA) mRNA, comple... 40 0.001 2
(AY220914) Dictyostelium discoideum ComB (comB) gene, comple... 40 0.001 2
(U66912) Dictyostelium discoideum ORF DG1016 gene, partial cds. 40 0.001 2
(AM486491) Vitis vinifera, whole genome shotgun sequence, co... 50 0.002 3
(AC107371) Mus musculus chromosome 7, clone RP24-66D2, compl... 42 0.003 2
(EV242504) VV_PEd06d05.g1 Vitis vinifera cv. perlette LibD V... 40 0.004 2
(CC230658) CH261-47D5_RM1.1 CH261 Gallus gallus genomic clon... 38 0.004 2
(BV015100) S212P6541FB2.T0 CZECHII/Ei Mus musculus STS genom... 40 0.004 2
(FM878120) Acrocephalus arundinaceus microsatellite DNA, loc... 38 0.004 2
(AG379483) Mus musculus molossinus DNA, clone:MSMg01-188H14.... 34 0.004 3
(AC230631) Bos taurus clone CH240-503I1, WORKING DRAFT SEQUE... 54 0.005 1
(EV229007) VV_PEa05e05.g2 Vitis vinifera cv. perlette LibA V... 46 0.005 2
(AC117677) Mus musculus chromosome 7, clone RP23-421G2, comp... 40 0.012 2
(AC091287) Mus musculus strain C57BL6/J clone RP23-118I1, WO... 36 0.012 2
(AC187273) Gallus gallus BAC clone CH261-69F17 from chromoso... 38 0.012 2
(AC186052) Canis Familiaris chromosome 2, clone XX-216I23, c... 38 0.012 2
(AC124676) Mus musculus chromosome 6, clone RP24-93M1, compl... 38 0.012 2
(AC164000) Mus musculus chromosome 7, clone RP23-157G7, comp... 40 0.012 2
(AC122488) Mus musculus BAC clone RP24-383B2 from chromosome... 38 0.012 2
(AC188580) Gallus gallus BAC clone CH261-158M5 from chromoso... 36 0.012 2
(AC186102) Microcebus murinus clone CH257-321O15, WORKING DR... 38 0.012 2
(AC079957) Mus musculus strain C57BL6/J chromosome 6 clone R... 38 0.012 2
(AC140311) Mus musculus BAC clone RP23-392M3 from chromosome... 38 0.012 2
(AC157660) Mus musculus BAC clone RP23-263I16 from chromosom... 36 0.012 2
(AC195276) Pan troglodytes BAC clone CH251-252L13 from chrom... 38 0.012 2
(AC144778) Mus musculus BAC clone RP23-278A22 from 6, comple... 36 0.012 2
(AC112264) Mus musculus BAC clone RP23-421E18 from 1, comple... 36 0.012 2
(AC103396) Mus musculus chromosome 1, clone RP24-142I5, comp... 38 0.012 2
(AC188345) Aotus nancymaae clone CH258-455D16, WORKING DRAFT... 36 0.012 2
(AC165205) Callicebus moloch clone LB5-392D15, WORKING DRAFT... 40 0.012 2
(AC157651) Mus musculus BAC clone RP24-363O21 from chromosom... 36 0.012 2
(AC192714) Gallus gallus BAC clone CH261-175C10 from chromos... 38 0.012 2
(AC164662) Mus musculus 10 BAC RP24-279D11 (Roswell Park Can... 38 0.012 2
(AC153496) Mus musculus 10 BAC RP23-373D1 (Roswell Park Canc... 38 0.012 2
(AC162873) Mus musculus chromosome 1, clone RP24-313G16, com... 38 0.012 2
(AC122416) Mus musculus BAC clone RP24-157E17 from chromosom... 38 0.012 2
(AL645950) Mouse DNA sequence from clone RP23-13C17 on chrom... 40 0.012 2
(AC108384) Pan troglodytes clone S13402.BCM-14, *** SEQUENCI... 38 0.012 2
(AL607035) Human DNA sequence from clone RP11-570G20 on chro... 38 0.012 2
(EV236219) VV_PEb25a11.g1 Vitis vinifera cv. perlette LibB V... 40 0.014 2
(DV968176) GC06167 Gracilaria changii cDNA library Gracilari... 46 0.014 2
(AG430324) Mus musculus molossinus DNA, clone:MSMg01-305E23.... 40 0.015 2
(CR038132) Forward strand read from insert in 5'HPRT inserti... 36 0.015 2
(CR187317) Forward strand read from insert in 5'HPRT inserti... 36 0.015 2
(BX985955) Forward strand read from insert in 5'HPRT inserti... 36 0.015 2
(AC022858) Homo sapiens chromosome 8, clone RP11-326E22, com... 36 0.015 6
(FE662254) UAHAUST_06C_F_C12 UaHaust_ARS Uromyces appendicul... 40 0.015 2
(FE662307) UAHAUST_06C_R_C12 UaHaust_ARS Uromyces appendicul... 40 0.015 2
(AU037537) Dictyostelium discoideum slug cDNA, clone SSD761. 40 0.016 2
(FH857475) OSB_176007xi01f1.ab1 OSB_176 Nicotiana tabacum ge... 46 0.028 2
(FH857300) OSB_176006xa24f1.ab1 OSB_176 Nicotiana tabacum ge... 46 0.028 2
(FH857309) OSB_176006xe18f1.ab1 OSB_176 Nicotiana tabacum ge... 46 0.029 2
(AG541888) Mus musculus molossinus DNA, clone:MSMg01-455F03.... 38 0.031 2
(CV064701) WNEL14b1 Wheat EST endosperm library Triticum aes... 40 0.032 2
(AC200123) Zea mays chromosome 4 clone CH201-336B2; ZMMBBc03... 50 0.035 4
(AL596091) Human DNA sequence *** SEQUENCING CANCELLED *** f... 34 0.039 6
(AL589678) Human DNA sequence from clone RP11-74C3 on chromo... 34 0.041 6
(AC170899) Mus musculus chromosome 19 clone RP23-337P13, WOR... 36 0.043 2
(AC095398) Rattus norvegicus clone CH230-7B21, *** SEQUENCIN... 36 0.044 2
(AC168065) Mus musculus chromosome 7 clone RP23-182M22, WORK... 34 0.044 2
(AC117344) Rattus norvegicus clone CH230-36B15, *** SEQUENCI... 36 0.044 2
(AC128720) Rattus norvegicus clone CH230-111D9, *** SEQUENCI... 34 0.044 2
(AC103102) Rattus norvegicus clone CH230-46H12, WORKING DRAF... 36 0.044 2
(AC122813) Mus musculus BAC clone RP23-230L15 from 14, compl... 36 0.044 2
(AC140791) Gallus gallus BAC clone TAM33-20G4 from chromosom... 38 0.044 2
(AC167362) Mus musculus BAC clone RP23-74P17 from chromosome... 34 0.044 2
(AC161460) Mus musculus BAC clone RP23-125A3 from chromosome... 36 0.044 2
(AC163653) Mus musculus BAC clone RP24-334B8 from chromosome... 36 0.044 2
(AC131697) Mus musculus BAC clone RP23-407K12 from 1, comple... 34 0.044 2
(AC103676) Homo sapiens chromosome 18, clone CTD-3223E7, com... 38 0.044 2
(AC207162) Ateles geoffroyi clone UC1-230O6, WORKING DRAFT S... 38 0.044 2
(AC161207) Mus musculus chromosome 1, clone RP23-66G23, comp... 38 0.044 2
(AC073388) Mus musculus clone RP23-255N16, WORKING DRAFT SEQ... 36 0.044 2
(AC099702) Mus musculus chromosome 1, clone RP23-218F13, com... 40 0.044 2
(AL590991) Mouse DNA sequence from clone RP23-255N16 on chro... 36 0.044 2
(AC104153) Papio anubis clone RP41-431I4, complete sequence. 36 0.044 2
(AC168057) Mus musculus chromosome 7 clone RP23-437O1, WORKI... 34 0.044 2
(AL691511) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 36 0.044 2
(AC116995) Mus musculus BAC clone RP23-3C16 from 1, complete... 36 0.044 2
(AC046181) Homo sapiens chromosome 18, clone RP11-815K11, co... 38 0.044 2
(AC073470) Homo sapiens chromosome 7 clone RP11-570M16, WORK... 36 0.044 2
(AC153652) Mus musculus BAC clone RP24-89C18 from chromosome... 36 0.044 2
(AC123923) Mus musculus BAC clone RP24-228I17 from chromosom... 34 0.044 2
(AC121889) Mus musculus BAC clone RP24-146D9 from chromosome... 38 0.045 2
(AC103893) Papio anubis clone RP41-216H1, complete sequence. 36 0.045 2
(AC166977) Mus musculus chromosome 1, clone RP24-291A4, comp... 36 0.045 2
(AC122046) Mus musculus BAC clone RP24-449N4 from 7, complet... 34 0.045 2
(AC196329) Chlorocebus aethiops clone CH252-110B10, WORKING ... 36 0.045 2
(AC009517) Homo sapiens chromosome 7 clone RP11-181K7, compl... 36 0.045 2
(AC187685) Callicebus moloch clone LB5-223C23, WORKING DRAFT... 36 0.045 2
(BX255925) Human DNA sequence from clone RP13-122B23 on chro... 36 0.046 2
(DD334290) A method of testing a sensitivity of tumor cells ... 40 0.046 2
(AL355815) Human DNA sequence from clone RP3-453H5 on chromo... 40 0.046 2
(AG280048) Mus musculus molossinus DNA, clone:MSMg01-051D09.... 38 0.046 2
(AC011183) Homo sapiens clone 12_B_11, LOW-PASS SEQUENCE SAM... 36 0.046 2
(BX322591) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 36 0.049 2
(AJ534950) Dictyostelium discoideum mRNA for NAD(+) ADP-ribo... 34 0.051 2
(DQ453800) Drosophila borborema alpha-esterase 5 (alphaE5) g... 40 0.054 2
(DV790907) Hw_liver_43_050728_G09 Bos taurus CF-24-HW liver ... 36 0.054 2
(BE420747) HWM002.B04 ITEC HWM Barley Leaf Library Hordeum v... 38 0.054 2
(DX553746) GH_MBb0030L05r GH_MBb Gossypium hirsutum genomic ... 36 0.055 2
(AG390910) Mus musculus molossinus DNA, clone:MSMg01-207N01.... 38 0.055 2
(DV780621) Hw_Fat_35_050805_C10 Bos taurus CF-24-HW fat cDNA... 36 0.055 2
(EG551033) MM04K05_RP Sugar Beet germination cDNA library Be... 36 0.055 2
(AG332587) Mus musculus molossinus DNA, clone:MSMg01-122N06.... 38 0.055 2
(AG324385) Mus musculus molossinus DNA, clone:MSMg01-111M22.... 36 0.055 2
(AG435154) Mus musculus molossinus DNA, clone:MSMg01-313C06.... 38 0.055 2
(CC297723) CH261-125H17_Sp6.1 CH261 Gallus gallus genomic cl... 38 0.055 2
(DT796627) 127370370 TL1 Tribolium castaneum cDNA clone 88O1... 36 0.055 2
(AG137609) Pan troglodytes DNA, clone: PTB-151I17.F. 38 0.056 2
(CZ524029) GMW2-39M11a.b2 GMW2 Glycine max genomic, genomic ... 36 0.056 2
(DY829142) CTOY4817.b1_A06.ab1 CTO(XYZ) dandelion Taraxacum ... 36 0.056 2
(ED892849) OA_CBa0079B22.f OA_CBa Oryza australiensis genomi... 36 0.056 2
(FM080546) Rattus norvegicus EST, 5'-end sequence, clone etn... 36 0.056 2
(CW595794) OA_ABa0131L04.r OA_ABa Oryza australiensis genomi... 36 0.056 2
(AZ288211) RPCI-23-44G17.TJB RPCI-23 Mus musculus genomic cl... 40 0.056 2
(BJ345781) Dictyostelium discoideum cDNA clone:dda28e22, 3' ... 38 0.056 2
(BJ443268) Dictyostelium discoideum cDNA clone:ddv52m09, 3' ... 38 0.056 2
(BJ357360) Dictyostelium discoideum cDNA clone:dda63f09, 3' ... 38 0.056 2
(BJ408820) Dictyostelium discoideum cDNA clone:dds47f05, 3' ... 38 0.057 2
(ED699065) GM_WBb0039M11.f GM_WBb Glycine max genomic clone ... 36 0.057 2
(AZ506962) 1M0348D20F Mouse 10kb plasmid UUGC1M library Mus ... 40 0.057 2
(BB898919) Macaca fascicularis cDNA clone: Qlv-U259A-A1, 3'e... 36 0.057 2
(BG401359) 602465474F1 NIH_MGC_75 Homo sapiens cDNA clone IM... 40 0.057 2
(AA085183) zn14a09.r1 Stratagene hNT neuron (#937233) Homo s... 36 0.058 2
(AI556138) UI-R-C2p-rd-a-07-0-UI.s1 UI-R-C2p Rattus norvegic... 36 0.058 2
(CK346796) L0915E04-3 NIA Mouse Newborn Kidney cDNA Library ... 40 0.059 2
(CU466503) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.066 4
(CU800817) A BAC library has been constructed from PN40024 g... 50 0.070 1
(CU762341) A BAC library has been constructed from PN40024 g... 50 0.070 1
(CG178180) PUIEF45TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 50 0.070 1
(CG115492) PUFPX23TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 50 0.070 1
(CG115491) PUFPX23TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 50 0.070 1
(CC432978) PUHAV63TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 50 0.070 1
(CC423996) PUHGR59TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 50 0.070 1
(AC195631) Pan troglodytes BAC clone CH251-682P9 from chromo... 44 0.093 2
(AC090674) Homo sapiens chromosome 12q clone RP11-26N11, WOR... 40 0.12 3
(AC164467) Bos taurus clone CH240-153M23, *** SEQUENCING IN ... 40 0.12 2
(FM992691) Candida dubliniensis CD36 chromosome 4, complete ... 34 0.14 2
(AC178342) Strongylocentrotus purpuratus clone R3-3105C12, W... 34 0.16 2
(AC102349) Mus musculus clone RP23-286J11, WORKING DRAFT SEQ... 34 0.16 2
(AC016958) Homo sapiens chromosome 12 clone RP11-290C10, WOR... 34 0.16 2
(AC097106) Rattus norvegicus clone CH230-2G22, WORKING DRAFT... 34 0.16 2
(AC114056) Rattus norvegicus clone CH230-192I7, WORKING DRAF... 36 0.16 2
(AC091276) Mus musculus chromosome 15, clone RP23-167B4, com... 34 0.16 2
(AC106599) Rattus norvegicus clone CH230-228C19, WORKING DRA... 38 0.16 2
(AC106307) Rattus norvegicus clone CH230-121L8, *** SEQUENCI... 34 0.16 2
(AC124977) Mus musculus chromosome 7, clone RP24-89J20, comp... 34 0.16 2
(AC189110) Gallus gallus BAC clone CH261-127N1 from chromoso... 34 0.16 2
(AC165365) Mus musculus BAC clone RP23-28N13 from chromosome... 34 0.16 2
(AC135290) Mus musculus BAC clone RP23-58D13 from 18, comple... 34 0.16 2
(AC178345) Strongylocentrotus purpuratus clone R3-3105E17, W... 34 0.16 2
(AL935264) Mouse DNA sequence from clone RP23-118A9 on chrom... 34 0.16 2
(AC160757) Mus musculus chromosome 3, clone RP23-200C3, comp... 34 0.16 2
(AC060772) Mus musculus clone RP23-137D3, WORKING DRAFT SEQU... 34 0.16 2
(AC163296) Mus musculus BAC clone RP23-135F1 from chromosome... 34 0.16 2
(AC157543) Mus musculus chromosome 1, clone RP23-271O17, com... 38 0.16 2
(AC160028) Mus musculus 10 BAC RP24-570M12 (Roswell Park Can... 38 0.16 2
(AC187195) Papio anubis clone RP41-23J15, WORKING DRAFT SEQU... 34 0.16 2
(AC105536) Rattus norvegicus clone CH230-222E16, WORKING DRA... 34 0.16 2
(AC102157) Mus musculus chromosome 1, clone RP23-393K4, comp... 38 0.16 2
(AC117644) Mus musculus chromosome 7, clone RP23-238L7, comp... 36 0.16 2
(AC129078) Mus musculus BAC clone RP24-71C5 from chromosome ... 34 0.16 2
(AC136410) Rattus norvegicus clone CH230-489H14, WORKING DRA... 34 0.16 2
(AC161816) Mus musculus BAC clone RP23-308L3 from chromosome... 34 0.16 2
(AC153594) Mus musculus 10 BAC RP23-98N14 (Roswell Park Canc... 34 0.16 2
(AC122927) Mus musculus chromosome UNKNOWN clone RP23-10F5, ... 34 0.16 2
(CT956049) Mouse DNA sequence from clone RP23-10F5 on chromo... 34 0.16 2
(CT963124) Mouse DNA sequence from clone RP23-137P2 on chrom... 34 0.16 2
(AL591404) Mouse DNA sequence from clone RP23-394O9 on chrom... 34 0.16 2
(AC195035) Colobus guereza clone CH272-462I16, WORKING DRAFT... 34 0.16 2
(AC102358) Mus musculus chromosome 8, clone RP23-451H9, comp... 34 0.16 2
(AC114582) Mus musculus chromosome 7, clone RP23-192M19, com... 34 0.16 2
(BX470152) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***... 34 0.16 2
(AC164158) Mus musculus BAC clone RP24-263G24 from chromosom... 36 0.16 2
(AC168213) Mus musculus chromosome 18 clone RP23-257A21 map ... 36 0.16 2
(AC108443) Mus musculus chromosome 7, clone RP23-13J9, compl... 34 0.16 2
(AC138260) Mus musculus chromosome 6, clone RP23-247I19, com... 34 0.16 2
(AC180885) Strongylocentrotus purpuratus clone R3-3064N21, W... 34 0.16 2
(AC110377) Mus musculus BAC clone RP23-460A13 from chromosom... 34 0.16 2
(AL844584) Mouse DNA sequence from clone RP23-309F17 on chro... 34 0.16 2
(AC135669) Mus musculus BAC clone RP23-360L22 from chromosom... 34 0.16 2
(AC153654) Mus musculus BAC clone RP23-457N11 from chromosom... 34 0.16 2
(AC132387) Mus musculus BAC clone RP23-440M14 from 1, comple... 36 0.16 2
(AC199225) Pongo abelii BAC clone CH276-441A5 from chromosom... 34 0.16 2
(AC193905) Pan troglodytes BAC clone CH251-283K12 from chrom... 34 0.16 2
(AC153847) Mus musculus 10 BAC RP23-286J11 (Roswell Park Can... 34 0.16 2
(AC008333) Drosophila melanogaster strain y chromosome 2 clo... 36 0.16 2
(AC198191) MACACA MULATTA BAC clone CH250-19M12 from chromos... 34 0.16 2
(AC194532) Pan troglodytes chromosome 10 clone CH251-665K10,... 36 0.16 2
(CU469123) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.16 2
(AC123600) Mus musculus chromosome 7, clone RP23-62J11, comp... 34 0.16 2
(AC119939) Mus musculus chromosome 5, clone RP24-267A23, com... 34 0.16 2
(AC154878) Mus musculus chromosome 7, clone RP23-250P5, comp... 34 0.16 2
(AC188380) Pan troglodytes chromosome X clone RP43-20J4 map ... 34 0.16 2
(AC156952) Mus musculus 10 BAC RP24-385D2 (Roswell Park Canc... 34 0.16 2
(AC188071) Macaca mulatta chromosome UNK clone CH250-12H12, ... 34 0.16 2
(AC157095) Mus musculus 6 BAC RP24-350P11 (Roswell Park Canc... 34 0.16 2
(AC171172) Mus musculus chromosome 3 clone RP23-150E7 map 3,... 34 0.16 2
(AC168274) Mus musculus BAC RP23-229B1 (Roswell Park Cancer... 34 0.16 2
(AC129040) Rattus norvegicus 6 BAC CH230-372A13 (Children's ... 34 0.16 2
(AC125133) Mus musculus BAC clone RP24-316A22 from chromosom... 34 0.16 2
(AC110534) Mus musculus chromosome 17, clone RP23-174D11, co... 34 0.16 2
(CU468838) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.16 2
(AC124734) Mus musculus chromosome UNKNOWN clone RP23-306C20... 34 0.16 2
(AC140456) Mus musculus BAC clone RP23-49D19 from 18, comple... 34 0.16 2
(AC179260) Strongylocentrotus purpuratus clone R3-42O21, WOR... 34 0.16 2
(AC102794) Mus musculus chromosome 3, clone RP23-235G13, com... 34 0.16 2
(AC197394) MACACA MULATTA BAC clone CH250-409H15 from chromo... 34 0.16 2
(AC121866) Mus musculus BAC clone RP24-114G1 from 8, complet... 34 0.16 2
(BX072552) Mouse DNA sequence from clone RP23-147I24 on chro... 38 0.16 2
(AC102633) Mus musculus chromosome 15, clone RP23-326O18, co... 34 0.16 2
(AC137915) Felis catus clone RP86-335H20, WORKING DRAFT SEQU... 34 0.16 2
(AG334056) Mus musculus molossinus DNA, clone:MSMg01-124M17.... 38 0.16 2
(AC195508) Gallus gallus chromosome 27 clone CH261-3A19, ***... 34 0.16 2
(AC169793) Macaca mulatta clone CH250-114D7, WORKING DRAFT S... 34 0.16 2
(AC173737) Strongylocentrotus purpuratus clone R3-3001N2, WO... 34 0.16 2
(AC170193) Macaca mulatta clone CH250-426B3, WORKING DRAFT S... 34 0.16 2
(AC124404) Mus musculus BAC clone RP24-371M10 from chromosom... 34 0.16 2
(AC119909) Mus musculus chromosome 8, clone RP24-241I4, comp... 34 0.16 2
(AC091814) Homo sapiens 12p BAC RP11-290C10 (Roswell Park Ca... 34 0.17 2
(AC178949) Strongylocentrotus purpuratus clone R3-3121G11, W... 34 0.17 2
(AC122423) Mus musculus BAC clone RP24-171N18 from 7, comple... 36 0.17 2
(AC132091) Mus musculus BAC clone RP24-465H15 from 18, compl... 34 0.17 2
(AL133477) Human DNA sequence from clone RP11-172F4 on chrom... 34 0.17 2
(AL137062) Human DNA sequence from clone RP11-198M22 on chro... 34 0.17 2
(AC025187) Homo sapiens chromosome 5 clone CTD-2383I20, comp... 36 0.17 2
(AC176816) Strongylocentrotus purpuratus clone R3-1110J2, WO... 34 0.17 2
(AC132566) Mus musculus strain 129S6/SvEvTac clone rp22-554j... 34 0.17 2
(AC114893) Felis catus clone RP86-373P23, WORKING DRAFT SEQU... 34 0.17 2
(AC007630) Homo sapiens chromosome 20 clone P1-7739, complet... 46 0.17 3
(AC170748) Mus musculus chromosome 3 clone RP24-402F13 map 3... 34 0.17 2
(AC180821) Strongylocentrotus purpuratus clone R3-3071B23, W... 34 0.17 2
(AC138259) Mus musculus clone RP23-237F19, LOW-PASS SEQUENCE... 34 0.17 2
(AC127426) Magnaporthe grisea chromosome 7 clone 10H11, *** ... 34 0.17 2
(AL683873) Mouse DNA sequence from clone RP23-119G22 on chro... 42 0.17 2
(AL805900) Mouse DNA sequence from clone RP23-85B14 on chrom... 34 0.17 2
(CU611034) Mouse DNA sequence from clone RP24-176O7 on chrom... 34 0.17 2
(AC204798) Tupaia belangeri clone CH275-412L22, WORKING DRAF... 34 0.17 2
(AC100128) Mus musculus clone RP23-41A1, LOW-PASS SEQUENCE S... 34 0.17 2
(AG376453) Mus musculus molossinus DNA, clone:MSMg01-184A19.... 44 0.17 2
(AC110566) Mus musculus chromosome 5, clone RP23-300A10, com... 44 0.18 3
(CL019762) CH216-5O13_Sp6.1 CH216 Xenopus (Silurana) tropica... 40 0.18 2
(AM463364) Vitis vinifera contig VV78X000492.7, whole genome... 34 0.19 2
(AF241823) Dictyostelium discoideum prespore protein MF12 ge... 34 0.19 2
(AC145984) Pan troglodytes BAC clone RP43-17F10 from chromos... 44 0.20 3
(AG280454) Mus musculus molossinus DNA, clone:MSMg01-051M18.... 38 0.20 2
(FN360612) Schistosoma mansoni genome sequence supercontig S... 36 0.20 2
(AK140241) Mus musculus adult male corpora quadrigemina cDNA... 36 0.20 2
(AG430667) Mus musculus molossinus DNA, clone:MSMg01-305N03.... 36 0.20 2
(AK077188) Mus musculus adult male testis cDNA, RIKEN full-l... 34 0.20 2
(DV795726) Hw_loin_EST_b28HW_A01 Bos taurus CF-24-HW loin cD... 34 0.20 2
(AG310977) Mus musculus molossinus DNA, clone:MSMg01-093J02.... 34 0.20 2
(DV791469) Hw_loin_32_050705_B06 Bos taurus CF-24-HW loin cD... 36 0.20 2
(AG320861) Mus musculus molossinus DNA, clone:MSMg01-106O10.... 36 0.20 2
(AG310664) Mus musculus molossinus DNA, clone:MSMg01-093C08.... 36 0.21 2
(AG365511) Mus musculus molossinus DNA, clone:MSMg01-168E08.... 34 0.21 2
(EX263948) 1444300_5_G10_041 PY06 Carica papaya cDNA, mRNA s... 36 0.21 2
(BE267192) 601189709F2 NIH_MGC_7 Homo sapiens cDNA clone IMA... 36 0.21 2
(AF064715) Mus musculus domesticus clone M2 repetitive seque... 36 0.21 2
(S89893) 3' region: coat protein [papaya ringspot virus PRSV... 34 0.21 2
(CC261466) CH261-133A10_Sp6.1 CH261 Gallus gallus genomic cl... 34 0.21 2
(ER704361) SB_BBc198-L23.R SB_BBc Sorghum bicolor genomic 3'... 36 0.21 2
(ER760402) SB_BBc59-M08.R SB_BBc Sorghum bicolor genomic 3',... 36 0.21 2
(AR095136) Sequence 10 from patent US 6002072. 34 0.21 2
(EF189735) Papaya ringspot virus isolate Trujillo-5 coat pro... 34 0.21 2
(ER651028) SB_BBc17-N23.F SB_BBc Sorghum bicolor genomic 5',... 34 0.21 2
(CR147728) Forward strand read from insert in 5'HPRT inserti... 34 0.21 2
(CX070298) UCRCS08_16A02_b Parent Washington Navel Orange Ca... 34 0.21 2
(DQ339580) Papaya ringspot virus P isolate Lara coat protein... 34 0.21 2
(GH102042) G993P127FO10.T0 Neurospora crassa cDNA - 1 hour G... 38 0.21 2
(CV709611) UCRPT01_0013C03_f Poncirus trifoliata CTV-challen... 34 0.21 2
(FL643498) TS29-H7 Reticulitermes flavipes symbiont library ... 34 0.21 2
(EV143649) 0209582 Brassica napus Very early anther Brassica... 34 0.21 2
(CR023036) Forward strand read from insert in 5'HPRT inserti... 34 0.21 2
(AZ859170) 2M0164J10R Mouse 10kb plasmid UUGC1M library Mus ... 34 0.21 2
(EE060175) zf_eli22_G01 Embryonic library Taeniopygia guttat... 36 0.21 2
(EV143862) 0209795 Brassica napus Very early anther Brassica... 34 0.21 2
(BV060953) S212P6957FD6.T0 CZECHII/Ei Mus musculus STS genom... 34 0.21 2
(EL577678) Physarum00816 Physarum polycephalum starvation st... 36 0.21 2
(AZ344740) 1M0078L22R Mouse 10kb plasmid UUGC1M library Mus ... 36 0.21 2
(AQ304251) HS_3208_A2_F07_T7 CIT Approved Human Genomic Sper... 38 0.21 2
(AZ357837) 1M0099L12R Mouse 10kb plasmid UUGC1M library Mus ... 34 0.21 2
(CE217513) tigr-gss-dog-17000326872496 Dog Library Canis lup... 34 0.21 2
(AA541431) ni81b03.s1 NCI_CGAP_Pr12 Homo sapiens cDNA clone ... 36 0.21 2
(AZ631709) 1M0486F05F Mouse 10kb plasmid UUGC1M library Mus ... 34 0.21 2
(EE509040) 24RDBNH_UP_063_F03_01NOV2005_021 Brassica napus 2... 34 0.21 2
(DC890484) Citrus unshiu mRNA, clone: GSA0268, 5'-end sequen... 34 0.21 2
(ED784981) GM_WBb0165O21.r GM_WBb Glycine max genomic clone ... 34 0.21 2
(AQ873833) V82A1 mTn-3xHA/lacZ Insertion Library, strain AB9... 38 0.21 2
(ED717973) GM_WBb0068H10.f GM_WBb Glycine max genomic clone ... 34 0.21 2
(AJ927929) Theileria annulata EST, clone tam022g06_p1k. 36 0.21 2
(AC155831) Mus musculus 10 BAC RP24-189B10 (Roswell Park Can... 40 0.22 3
(CV706554) UCRPT01_0008I07_f Poncirus trifoliata CTV-challen... 34 0.22 2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 38 0.22 7
(FH982068) CHO_OF6830xj03r1.ab1 CHO_OF6 Nicotiana tabacum ge... 34 0.22 2
(AV270022) Mus musculus adult male testis cDNA, RIKEN full-l... 34 0.22 2
(AC153623) Mus musculus 6 BAC RP23-459F14 (Roswell Park Canc... 44 0.23 3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 0.23 9
(AC211373) Mus musculus BAC clone RP24-378P5 from chromosome... 44 0.24 2
(AG279960) Mus musculus molossinus DNA, clone:MSMg01-051B05.... 38 0.24 2
(CU329686) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.24 4
(EG101978) MSAM172335_1223_1907 LCM-dissected maize inbred l... 38 0.25 2
(BW265074) Ciona intestinalis cDNA, clone:cign003f14, 5' end... 32 0.25 3
(BX072549) Zebrafish DNA sequence from clone CH211-114A17 in... 34 0.26 5
(AL034429) Human DNA sequence from clone RP5-894K16 on chrom... 38 0.27 4
(AC141969) Rattus norvegicus clone CH230-306C7, WORKING DRAF... 48 0.28 1
(CU694521) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.28 1
(CU468356) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.28 1
(AC199522) Zea mays chromosome unknown clone CH201-520G9; ZM... 48 0.28 1
(AC169971) Bos taurus clone CH240-231I14, WORKING DRAFT SEQU... 48 0.28 1
(FH052090) CHO_OF3326xb06f1.ab1 CHO_OF3 Nicotiana tabacum ge... 48 0.28 1
(ET908434) CHO_OF345xe19f1.ab1 CHO_OF Nicotiana tabacum geno... 48 0.28 1
(CC528422) CH240_403F16.TARBAC13P2 CHORI-240 Bos taurus geno... 48 0.28 1
(AE017125) Helicobacter hepaticus ATCC 51449, complete genome. 48 0.28 1
(CA140656) SCJFRT2053H10.b RT2 Saccharum officinarum cDNA cl... 38 0.28 2
(AC201550) Strongylocentrotus purpuratus clone R3-3114D15, W... 36 0.28 5
(AC122646) Rattus norvegicus clone CH230-198E17, *** SEQUENC... 34 0.28 5
(AX838360) Sequence 1 from Patent WO03076658. 42 0.29 2
(CE830899) tigr-gss-dog-17000332010967 Dog Library Canis lup... 44 0.29 2
(AC084355) Homo sapiens 12 BAC RP11-318E11 (Roswell Park Can... 40 0.30 2
(AC120322) Rattus norvegicus BAC CH230-313G4 (Children's Ho... 46 0.31 2
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 34 0.33 5
(BV641290) S215P6525RE8.T0 Clara Pan troglodytes troglodytes... 42 0.34 2
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 32 0.35 8
(AG370200) Mus musculus molossinus DNA, clone:MSMg01-175B18.... 38 0.36 2
(FH992224) CHO_OF6851xm21f1.ab1 CHO_OF6 Nicotiana tabacum ge... 42 0.39 2
(BG113894) 602284351F1 NIH_MGC_86 Homo sapiens cDNA clone IM... 32 0.40 3
(AG513941) Mus musculus molossinus DNA, clone:MSMg01-418K12.... 34 0.40 3
(DN809823) 76897662 Sea Urchin primary mesenchyme cell cDNA ... 36 0.41 2
(EI862747) CAH1-31D6TV CAA1Ba Cicer arietinum genomic clone ... 34 0.43 3
(AM626430) Entamoeba dispar GSS, clone dispar128f08.q1k. 38 0.43 2
(BH159284) ENTQR75TF Entamoeba histolytica Sheared DNA Entam... 36 0.44 2
(CC926174) t086j02ba.f1 TAMBT Bos taurus genomic clone t086j... 38 0.44 2
(CR759923) Zebrafish DNA sequence from clone CH211-147L19 in... 40 0.45 3
(AC179594) Strongylocentrotus purpuratus clone R3-1029F8, WO... 44 0.46 3
(AG480731) Mus musculus molossinus DNA, clone:MSMg01-375B11.... 36 0.47 2
(ER728769) SB_BBc05-B24.R SB_BBc Sorghum bicolor genomic 3',... 42 0.48 2
(ER675222) SB_BBc60-I17.R SB_BBc Sorghum bicolor genomic 3',... 40 0.49 2
(AC133609) Oryza sativa (japonica cultivar-group) chromosome... 38 0.49 3
(AC229780) Oryza minuta clone OM__Ba0081J07, complete sequence. 46 0.49 4
(ER472887) 1092963973762 Global-Ocean-Sampling_GS-35-01-01-1... 38 0.50 2
(AC184105) Mus musculus chromosome UNK clone CH35-62A13, com... 44 0.50 4
(DU762709) ASNG520.g2 HF200_10-06-02 uncultured marine micro... 38 0.52 2
(AC131759) Mus musculus BAC clone RP24-212D8 from chromosome... 38 0.56 3
(AC213373) Zea mays chromosome unknown clone CH201-86G18; ZM... 42 0.56 3
(EL691479) OPR01514 Elaeis guineensis root Elaeis guineensis... 40 0.57 2
(AJ927138) Theileria annulata EST, clone tam026f03_p1k. 40 0.57 2
(AC115630) Mus musculus chromosome UNK clone RP23-115K3, WOR... 32 0.58 2
(AP002530) Homo sapiens genomic DNA, chromosome 6q21, anti-o... 34 0.58 2
(AC096415) Rattus norvegicus clone CH230-83A16, *** SEQUENCI... 34 0.59 2
(AL627327) Mouse DNA sequence from clone RP23-62O17 on chrom... 34 0.59 2
(AC131471) Rattus norvegicus clone CH230-119K14, WORKING DRA... 32 0.59 2
(AC094694) Rattus norvegicus clone CH230-5F1, *** SEQUENCING... 34 0.59 2
(AC110175) Mus musculus chromosome 12, clone RP23-124B21, co... 32 0.59 2
(AC022460) Homo sapiens chromosome 12 clone RP11-403N24, WOR... 34 0.59 2
(AC177202) Strongylocentrotus purpuratus clone R3-4018O20, W... 32 0.59 2
(AC154142) Mus musculus chromosome 1, clone RP23-187M7, comp... 32 0.59 2
(AC130391) Rattus norvegicus clone CH230-4L5, WORKING DRAFT ... 32 0.59 2
(EI691196) SB_BBd06-N15.R SB_BBd Sorghum bicolor genomic 3',... 40 0.59 2
(AC122754) Mus musculus chromosome 1, clone RP24-510K10, com... 32 0.59 2
(AC199111) Pan troglodytes BAC clone CH251-685C16 from chrom... 32 0.59 2
(AC147633) Mus musculus BAC clone RP23-302B3 from chromosome... 34 0.59 2
(BW997757) Bombyx mori mRNA, clone:ES2044, expressed in fert... 32 0.59 3
(AC093869) Homo sapiens chromosome 2 clone RP11-592N1, WORKI... 34 0.59 2
(AC195022) Colobus guereza clone CH272-121H12, WORKING DRAFT... 32 0.59 2
(AC116573) Mus musculus BAC clone RP23-114E15 from chromosom... 36 0.59 2
(AC132863) Mus musculus chromosome 15, clone RP24-388K7, com... 32 0.59 2
(CS789926) Sequence 1182 from Patent WO2005031001. 32 0.59 2
(CT010432) Mouse DNA sequence from clone RP23-337G13 on chro... 32 0.60 2
(AC189088) Gallus gallus BAC clone CH261-4N7 from chromosome... 36 0.60 2
(CU914429) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 0.60 2
(AC120132) Mus musculus chromosome 6, clone RP23-105D1, comp... 34 0.60 2
(AC218060) Chlorocebus aethiops clone CH252-440G9, WORKING D... 32 0.60 2
(CU179688) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 0.60 2
(AC153901) Mus musculus clone RP23-42I17, WORKING DRAFT SEQU... 36 0.60 2
(AC158655) Mus musculus BAC RP23-406J21 (Roswell Park Cance... 36 0.60 2
(AC195043) Colobus guereza clone CH272-93E17, WORKING DRAFT ... 32 0.60 2
(AC211220) Pongo abelii chromosome 1 clone CH276-353M5, WORK... 32 0.60 2
(AC135742) Rattus norvegicus clone CH230-381G20, *** SEQUENC... 34 0.60 2
(CU582841) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 0.60 2
(AC167889) Bos taurus clone CH240-193E1, WORKING DRAFT SEQUE... 34 0.60 2
(AC192866) Gallus gallus BAC clone CH261-91K7 from chromosom... 34 0.60 2
(AC190308) Macaca mulatta clone CH250-356P14, WORKING DRAFT ... 32 0.60 2
(AC022307) Homo sapiens chromosome N/A clone RP11-24C10, WOR... 34 0.60 2
(AC069503) Homo sapiens 12 BAC RP11-87C12 (Roswell Park Canc... 34 0.60 2
(AC146445) Pan troglodytes chromosome 7 clone RP43-7M24, WOR... 32 0.60 2
(AC132501) Rattus norvegicus clone CH230-306G10, *** SEQUENC... 34 0.60 2
(AC166572) Mus musculus BAC clone RP23-346L20 from chromosom... 32 0.60 2
(CU462958) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 0.60 2
(AL355532) Human DNA sequence from clone RP11-487F5 on chrom... 34 0.60 2
(AC009060) Homo sapiens chromosome 16 clone RP11-296I10, com... 34 0.60 2
(AC154531) Mus musculus BAC clone RP23-468B10 from chromosom... 34 0.60 2
(CU467799) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.60 2
(AC118194) Mus musculus chromosome 3, clone RP23-464I9, comp... 32 0.60 2
(AL390760) Human DNA sequence from clone RP11-370F5 on chrom... 32 0.60 2
(AC018846) Homo sapiens chromosome 16 clone RP11-370P15, com... 34 0.60 2
(AC189124) Pan troglodytes BAC clone CH251-265J23 from chrom... 32 0.60 2
(AC164646) Mus musculus BAC clone RP24-262I1 from chromosome... 32 0.60 2
(AL929238) Mouse DNA sequence from clone RP23-480I16 on chro... 32 0.60 2
(AP006297) Homo sapiens genomic DNA, chromosome 6 clone:RP11... 34 0.60 2
(AG386906) Mus musculus molossinus DNA, clone:MSMg01-201E16.... 40 0.60 2
(AC181686) Strongylocentrotus purpuratus clone R3-1040G9, WO... 34 0.60 2
(AC139922) Rattus norvegicus clone CH230-352I1, WORKING DRAF... 34 0.60 2
(AC235294) Glycine max strain Williams 82 clone GM_WBb0059G0... 34 0.60 2
(AC011462) Homo sapiens chromosome 19 clone CTC-435M10, comp... 34 0.61 2
(AC169887) Macaca mulatta clone CH250-283B1, WORKING DRAFT S... 32 0.61 2
(AG347317) Mus musculus molossinus DNA, clone:MSMg01-142M20.... 40 0.61 2
(AL353756) Human DNA sequence from clone RP11-415D9 on chrom... 34 0.61 2
(AC121880) Mus musculus BAC clone RP24-132E6 from 13, comple... 34 0.61 2
(AC235738) Glycine max strain Williams 82 clone GM_WBa0076A0... 36 0.61 2
(AC235149) Glycine max strain Williams 82 clone GM_WBa0082G1... 36 0.61 2
(AG346808) Mus musculus molossinus DNA, clone:MSMg01-142B19.... 38 0.61 2
(AB041340) Homo sapiens genomic DNA, chromosome 6q21, clone:... 34 0.61 2
(AL133403) Human DNA sequence *** SEQUENCING CANCELLED *** f... 34 0.61 2
(AL356807) Human chromosome 14 DNA sequence BAC C-2335K5 of ... 36 0.61 2
(AC219053) Zea mays chromosome 4 clone ZMMBBb-357E16; ZMMBBb... 34 0.61 2
(EF206802) Glycine max clone GM_WBa0036O20, *** SEQUENCING I... 36 0.61 2
(AC235122) Glycine max strain Williams 82 clone GM_WBa0036O2... 36 0.61 2
(AL672040) Human DNA sequence from clone RP11-449L4 on chrom... 34 0.61 2
(AL022099) Human DNA sequence from clone RP1-57E3 on chromos... 32 0.61 2
(DX524787) GH_MBb0026B10f GH_MBb Gossypium hirsutum genomic ... 38 0.62 2
(AG311102) Mus musculus molossinus DNA, clone:MSMg01-093L21.... 38 0.62 2
(AC176958) Strongylocentrotus purpuratus clone R3-34H18, WOR... 32 0.62 2
(AB042235) Homo sapiens genomic DNA, chromosome 6q21, clone:... 34 0.62 2
(DX522407) GH_MBb0081P14r GH_MBb Gossypium hirsutum genomic ... 44 0.62 2
(AC197836) Zea mays chromosome 4 clone ZMMBBb-413F1; ZMMBBb0... 34 0.63 2
(AL121991) Human DNA sequence from clone RP4-675E8 on chromo... 34 0.64 2
(AL161513) Arabidopsis thaliana DNA chromosome 4, contig fra... 40 0.64 3
(AG347167) Mus musculus molossinus DNA, clone:MSMg01-142J13.... 36 0.64 2
(AG280429) Mus musculus molossinus DNA, clone:MSMg01-051M04.... 42 0.64 2
(CN491809) Mdfw2006a03.y1 Mdfw Malus x domestica cDNA clone ... 36 0.65 3
(GC699682) Sequence 14927 from patent US 6812339. 34 0.65 2
(AC120459) Homo sapiens, *** SEQUENCING IN PROGRESS ***, 45 ... 34 0.65 5
(DL235938) NOVEL COMPOSITIONS AND METHODS FOR CANCER. 34 0.66 2
(DD164637) NOVEL COMPOSITIONS AND METHODS FOR CANCER. 34 0.66 2
(AX695857) Sequence 1484 from Patent WO03008583. 34 0.66 2
(GN070928) Sequence 1484 from Patent EP2034030. 34 0.66 2
(GC698219) Sequence 13464 from patent US 6812339. 34 0.66 2
(AG280045) Mus musculus molossinus DNA, clone:MSMg01-051D08.... 38 0.67 2
(BN000073) TPA: Homo sapiens lymphocyte-specific protein tyr... 34 0.68 2
(AX345133) Sequence 204 from Patent WO0200928. 34 0.68 2
(AC114478) Homo sapiens chromosome 3 clone RP11-333K5, compl... 34 0.69 5
(AM432753) Vitis vinifera contig VV78X124089.12, whole genom... 38 0.69 2
(EB110811) 000430AEPA001504HT (AEPA) Pinkie expanding leaf M... 36 0.70 3
(AM423770) Vitis vinifera contig VV78X196591.4, whole genome... 32 0.71 2
(AM475408) Vitis vinifera contig VV78X263358.24, whole genom... 40 0.71 3
(AC232620) Choloepus hoffmanni clone CH281-98H14, WORKING DR... 42 0.72 4
(AK047943) Mus musculus 16 days embryo head cDNA, RIKEN full... 32 0.73 2
(DX549021) GH_MBb0043F19f GH_MBb Gossypium hirsutum genomic ... 38 0.73 2
(AK048704) Mus musculus 0 day neonate cerebellum cDNA, RIKEN... 32 0.73 2
(AK134351) Mus musculus 13 days embryo male testis cDNA, RIK... 32 0.74 2
(AC168934) Bos taurus clone CH240-208G3, WORKING DRAFT SEQUE... 40 0.75 4
(DR996662) Mdas9005H10.g1 Apple_EST_Mdas Malus x domestica c... 36 0.75 3
(CL081998) CH216-165O3_RM4.1 CH216 Xenopus (Silurana) tropic... 34 0.75 2
(CL082766) CH216-171F24_Sp5.1 CH216 Xenopus (Silurana) tropi... 32 0.75 2
(AG346153) Mus musculus molossinus DNA, clone:MSMg01-141D13.... 34 0.76 2
(AG382933) Mus musculus molossinus DNA, clone:MSMg01-193M05.... 32 0.76 2
(AG280017) Mus musculus molossinus DNA, clone:MSMg01-051C15.... 34 0.76 2
(CL125503) ISB1-87B20_T7.1 ISB1 Xenopus (Silurana) tropicali... 36 0.76 2
(BM545918) AGENCOURT_6505280 NIH_MGC_125 Homo sapiens cDNA c... 36 0.76 2
(CK424944) AUF_IpSto_12_p10 Stomach cDNA library Ictalurus p... 32 0.76 2
(DX535456) GH_MBb0065G22f GH_MBb Gossypium hirsutum genomic ... 32 0.76 2
(CL081949) CH216-164O24_Sp5.1 CH216 Xenopus (Silurana) tropi... 36 0.76 2
(AG305303) Mus musculus molossinus DNA, clone:MSMg01-085N08.... 34 0.76 2
(AG390513) Mus musculus molossinus DNA, clone:MSMg01-207D01.... 36 0.76 2
(AG382061) Mus musculus molossinus DNA, clone:MSMg01-192F17.... 34 0.76 2
(FN278038) Trypanosoma congolense isolate IL3000 EST read TC... 34 0.77 2
(AG382028) Mus musculus molossinus DNA, clone:MSMg01-192E23.... 32 0.77 2
(AG333011) Mus musculus molossinus DNA, clone:MSMg01-123G09.... 36 0.77 2
(DX553104) GH_MBb0023O01r GH_MBb Gossypium hirsutum genomic ... 32 0.77 2
(EH186273) EC01_d_3948 EC01 Eragrostis curvula cDNA, mRNA se... 34 0.77 2
(DD471877) Detection instruments using polynucleotide mapped... 34 0.77 2
(DD465837) Wheat breeding method by an application of diploi... 34 0.77 2
(DX537567) GH_MBb0021I14f GH_MBb Gossypium hirsutum genomic ... 32 0.77 2
(BU510331) AGENCOURT_10114968 NIH_MGC_134 Mus musculus cDNA ... 36 0.77 2
(FN287975) Trypanosoma congolense isolate IL3000 EST read TC... 32 0.77 2
(ER716268) SB_BBc138-F16.R SB_BBc Sorghum bicolor genomic 3'... 34 0.77 2
(BG113895) 602284352F1 NIH_MGC_86 Homo sapiens cDNA clone IM... 32 0.77 2
(X14054) Human lymphocyte-specific protein tyrosine kinase (... 34 0.77 2
(AZ211230) SP_0154_B2_C02_T7A Strongylocentrotus purpuratus,... 34 0.77 2
(CL094760) ISB1-25I2_T7.1 ISB1 Xenopus (Silurana) tropicalis... 36 0.78 2
(CL130140) ISB1-97L20_T7.1 ISB1 Xenopus (Silurana) tropicali... 32 0.78 2
(ER724587) SB_BBc193-B22.F SB_BBc Sorghum bicolor genomic 5'... 36 0.78 2
(BU218139) 603758071F1 CSEQCHN04 Gallus gallus cDNA clone Ch... 32 0.78 2
(DY888284) CeleSEQ5110 Cunninghamella elegans pBluescript (E... 34 0.78 2
(DU959360) 230176 Tomato MboI BAC Library Solanum lycopersic... 34 0.78 2
(EI683414) SB_BBd23-P21.F SB_BBd Sorghum bicolor genomic 5',... 36 0.78 2

>(AU073168) Dictyostelium discoideum slug cDNA, clone SSG304.
Length = 240

Score = 476 bits (240), Expect = e-130
Identities = 240/240 (100%)
Strand = Plus / Plus


Query: 1 accatatcatggcttcccaagttggtggaaaactggtactcatgatatctcattattaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 accatatcatggcttcccaagttggtggaaaactggtactcatgatatctcattattaca 60


Query: 61 aggtgtctctaaacatggttattctcaatatgaagatatttgcaatgatcaatcattacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aggtgtctctaaacatggttattctcaatatgaagatatttgcaatgatcaatcattacc 120


Query: 121 attccatgaattagctcaatcacttcgtttagataaagaaaaagaaaaaggaagtggtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attccatgaattagctcaatcacttcgtttagataaagaaaaagaaaaaggaagtggtgg 180


Query: 181 tgacagtggcgttgatgatgatgcctctgataaaaagagaaagagaaaagagaatatttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgacagtggcgttgatgatgatgcctctgataaaaagagaaagagaaaagagaatatttt 240

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 629,894,117
Number of extensions: 49951179
Number of successful extensions: 5553457
Number of sequences better than 10.0: 1832
Length of query: 425
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 402
Effective length of database: 102,190,702,835
Effective search space: 41080662539670
Effective search space used: 41080662539670
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 8. 1
Homology vs Protein
Query= Contig-U05216-1 (Contig-U05216-1Q) /CSM_Contig/Contig-U05216-1Q.Seq.d
(425 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CR954201_555(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 41 0.015
BC126000_1(BC126000|pid:none) Xenopus laevis hypothetical protei... 40 0.020
(A2AJK6) RecName: Full=Chromodomain-helicase-DNA-binding protein... 40 0.020
BC128691_1(BC128691|pid:none) Xenopus laevis hypothetical protei... 40 0.020
AB037837_1(AB037837|pid:none) Homo sapiens mRNA for KIAA1416 pro... 40 0.026
CP001326_53(CP001326|pid:none) Micromonas sp. RCC299 chromosome ... 40 0.026
AK295751_1(AK295751|pid:none) Homo sapiens cDNA FLJ57840 complet... 40 0.026
BC168553_1(BC168553|pid:none) Xenopus tropicalis chromodomain he... 39 0.045
(Q8BYH8) RecName: Full=Chromodomain-helicase-DNA-binding protein... 38 0.13
AY647157_1(AY647157|pid:none) Homo sapiens KISH2 (KISH2) mRNA, c... 37 0.22
DQ333316_1(DQ333316|pid:none) Homo sapiens PRIC320 isoform 1 mRN... 37 0.22
(Q3L8U1) RecName: Full=Chromodomain-helicase-DNA-binding protein... 37 0.22
DQ059482_1(DQ059482|pid:none) Homo sapiens ciprofibrate bound pr... 37 0.22
AL590430_1(AL590430|pid:none) Mouse DNA sequence from clone RP23... 37 0.29
BC168549_1(BC168549|pid:none) Xenopus tropicalis cDNA clone MGC:... 37 0.29
(Q9H6D4) RecName: Full=Chromodomain-helicase-DNA-binding protein... 37 0.29
(B5DE69) RecName: Full=Chromodomain-helicase-DNA-binding protein... 37 0.29
BC150806_1(BC150806|pid:none) Mus musculus chromodomain helicase... 37 0.29
AB037756_1(AB037756|pid:none) Homo sapiens mRNA for KIAA1335 pro... 37 0.29
AF113847_1(AF113847|pid:none) Drosophila melanogaster kismet (ki... 36 0.49
AE014134_63(AE014134|pid:none) Drosophila melanogaster chromosom... 36 0.49
AE014134_62(AE014134|pid:none) Drosophila melanogaster chromosom... 36 0.49
FN357317_37(FN357317|pid:none) Schistosoma mansoni genome sequen... 35 0.84
(Q8TBR9) RecName: Full=Chromodomain-helicase-DNA-binding protein... 34 1.4
BC156439_1(BC156439|pid:none) Synthetic construct Homo sapiens c... 34 1.4
AK129393_1(AK129393|pid:none) Mus musculus premature mRNA for mK... 34 1.4
BC098452_1(BC098452|pid:none) Homo sapiens chromodomain helicase... 34 1.4
(Q9JIX5) RecName: Full=Chromodomain-helicase-DNA-binding protein... 34 1.4
(Q09XV5) RecName: Full=Chromodomain-helicase-DNA-binding protein... 34 1.4
AB046784_1(AB046784|pid:none) Homo sapiens mRNA for KIAA1564 pro... 34 1.4
AL049607_10(AL049607|pid:none) Arabidopsis thaliana DNA chromoso... 33 3.2
AY243501_1(AY243501|pid:none) Homo sapiens chromatin remodeling ... 33 4.2
(B0R0I6) RecName: Full=Chromodomain-helicase-DNA-binding protein... 32 5.4
AL928674_21(AL928674|pid:none) Zebrafish DNA sequence from clone... 32 5.4
FN357585_11(FN357585|pid:none) Schistosoma mansoni genome sequen... 32 7.1
AL031667_6(AL031667|pid:none) Human DNA sequence from clone RP4-... 32 7.1
(Q14839) RecName: Full=Chromodomain-helicase-DNA-binding protein... 32 9.3
BC046866_1(BC046866|pid:none) Xenopus laevis chromodomain helica... 32 9.3
BC133719_1(BC133719|pid:none) Xenopus tropicalis chromodomain he... 32 9.3
(Q6PDQ2) RecName: Full=Chromodomain-helicase-DNA-binding protein... 32 9.3
AK220473_1(AK220473|pid:none) Mus musculus mRNA for mKIAA4075 pr... 32 9.3
BC006035_1(BC006035|pid:none) Mus musculus chromodomain helicase... 32 9.3

>CR954201_555(CR954201|pid:none) Ostreococcus tauri strain OTTH0595,
*** SEQUENCING IN PROGRESS ***.
Length = 1390

Score = 40.8 bits (94), Expect = 0.015
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +2

Query: 20 SWWKTGTHDISLLQGVSKHGYSQYEDICNDQSLPFHE 130
SWW T HD +L+ G KHG+ +Y +I +D +LPF E
Sbjct: 1053 SWW-TEDHDRALVVGTLKHGFGKYAEIRDDPNLPFAE 1088

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 577,216,953
Number of extensions: 8955142
Number of successful extensions: 16203
Number of sequences better than 10.0: 42
Number of HSP's gapped: 16203
Number of HSP's successfully gapped: 63
Length of query: 141
Length of database: 1,061,185,681
Length adjustment: 104
Effective length of query: 37
Effective length of database: 721,267,089
Effective search space: 26686882293
Effective search space used: 26686882293
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)

PSORT

psg: 0.73 gvh: 0.41 alm: 0.54 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: Golgi

>> prediction for Contig-U05216-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0