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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05201-1
Contig ID Contig-U05201-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U05201-1 (Contig-U05201-1Q) /CSM_Contig/Contig-U05201-1Q.Seq.d
AAACTTCAAAAACATTTATTGTTTTTGTTTTTCCAAAAACATTAAAACAC
ACCACATCAACATAGACCCCCCCTCCACTTCTCCCATAACACAAAATATA
AAAATTAAAGAAGATGTCAATTAAAACGCTAACATTATATAATTTTAATA
CCAGTTATTCATTTGGTAAAGAGGAGAAAAAAGAAAAAGAACAATCACTT
ACATCAAAATTAGCACGTTTAAAAGATTCTTATGAAAAAGAAGGATTAAG
AAAAGCAGTAGAGGGTATCATTATTATTCATGATCATGGTCATCCTCATA
TATTACTTTTACAAGATAATAATTATTTTAAATTACCGGGAGGTAAACTT
AAACCAGGAGAAAATGAAATTGATGGACTTATAAGAAAATTAACAAAAAA
ACTATCACCAACAGGTACTCCTGTATCAGATGCACCTTGGGAGATTGGTG
ATCATGTTTCAACATGGTGGAGACCAAATTTTGAACCATCCCTTTTTCCA
TATATTCCTTCTCATATAACTAAACCAAAAGAATGTAAAAAACTATTTGT
TGTTACCCTTCCTGAAAAATGTAAATTTGCTGTTTCAAATAATTTAAGTT
TAATTGCTGTGTCACTTTATGAAATTTATAATAATTCTCAAAGATATGGT
GCTGTAATTTCAAGTATTCCTGCACTCATTAGTAGATATACTTTCGTTTA
TCTCAATGTAGATTAGATATCAAAAAAAAAAATAAAAAAATAAAAAATGA
TAAAAAATAAAAATAATAAAAAT
Gap no gap
Contig length 773
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 2626215
End point 2626991
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U05201
List of clone(s) 

est1=SSG192E,1,774
est2=VSG230Z,239,774
est3=VSG230F,251,731
Translated Amino Acid sequence 
tsktfivfvfpktlkhttst*tpppllp*hki*KLKKMSIKTLTLYNFNTSYSFGKEEKK
EKEQSLTSKLARLKDSYEKEGLRKAVEGIIIIHDHGHPHILLLQDNNYFKLPGGKLKPGE
NEIDGLIRKLTKKLSPTGTPVSDAPWEIGDHVSTWWRPNFEPSLFPYIPSHITKPKECKK
LFVVTLPEKCKFAVSNNLSLIAVSLYEIYNNSQRYGAVISSIPALISRYTFVYLNVD*is
kkkikk*kmiknknnkn
Translated Amino Acid sequence (All Frames) 
Frame A:
klqkhllflffqkh*ntphqhrpplhfshntkykn*rrcqlkr*hyiilipvihlvkrrk
kkknnhlhqn*hv*kilmkkkd*ekq*rvsllfmimviliyyfykiiiilnyrevnlnqe
kmklmdl*en*qknyhqqvllyqmhlgrlvimfqhggdqilnhpffhiflli*lnqknvk
nylllpflknvnllfqii*v*llchfmkfiiilkdmvl*fqvflhslvdilsfism*iry
qkkk*knkk**kikiik


Frame B:
nfkniycfcfsknikthhinidppstspitqnikikedvn*nanii*f*yqlfiw*rgek
rkrtityikistfkrfl*krrikkssrgyhyys*swsssyitftr**lf*itgr*t*trr
k*n*wtykkinkktitnryscirctlgdw*scfnmvetkf*tipfsiysfsyn*tkrm*k
ticcyps*km*iccfk*fkfnccvtl*nl**fskiwccnfkyscth**iyfrlsqcrldi
kkknkkikndkk*k**k


Frame C:
tsktfivfvfpktlkhttst*tpppllp*hki*KLKKMSIKTLTLYNFNTSYSFGKEEKK
EKEQSLTSKLARLKDSYEKEGLRKAVEGIIIIHDHGHPHILLLQDNNYFKLPGGKLKPGE
NEIDGLIRKLTKKLSPTGTPVSDAPWEIGDHVSTWWRPNFEPSLFPYIPSHITKPKECKK
LFVVTLPEKCKFAVSNNLSLIAVSLYEIYNNSQRYGAVISSIPALISRYTFVYLNVD*is
kkkikk*kmiknknnkn
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05201-1 (Contig-U05201-1Q)
/CSM_Contig/Contig-U05201-1Q.Seq.d
         (773 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05201-1 (Contig-U05201-1Q) /CSM_Contig/Conti...  1275  0.0
Contig-U11680-1 (Contig-U11680-1Q) /CSM_Contig/Conti...    36  0.054
Contig-U09402-1 (Contig-U09402-1Q) /CSM_Contig/Conti...    36  0.054
Contig-U02442-1 (Contig-U02442-1Q) /CSM_Contig/Conti...    36  0.054
Contig-U02050-1 (Contig-U02050-1Q) /CSM_Contig/Conti...    36  0.054
Contig-U14757-1 (Contig-U14757-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U14271-1 (Contig-U14271-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U13904-1 (Contig-U13904-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U12789-1 (Contig-U12789-1Q) /CSM_Contig/Conti...    34  0.21
Contig-U12498-1 (Contig-U12498-1Q) /CSM_Contig/Conti...    34  0.21

>Contig-U05201-1 (Contig-U05201-1Q) /CSM_Contig/Contig-U05201-1Q.Seq.d
          Length = 773

 Score = 1275 bits (643), Expect = 0.0
 Identities = 695/721 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacttcaaaaacatttattgtttttgtttttccaaaaacattaaaacacaccacatcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaacttcaaaaacatttattgtttttgtttttccaaaaacattaaaacacaccacatcaa 60

                                                                       
Query: 61  catagannnnnnntccacttctcccataacacaaaatataaaaattaaagaagatgtcaa 120
           ||||||       |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  catagaccccccctccacttctcccataacacaaaatataaaaattaaagaagatgtcaa 120

                                                                       
Query: 121 ttaaaacgctaacattatataattttaataccagttattcatttggtaaagaggagnnnn 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct: 121 ttaaaacgctaacattatataattttaataccagttattcatttggtaaagaggagaaaa 180

                                                                       
Query: 181 nnnnnnnngaacaatcacttacatcaaaattagcacgtttaaaagattcttatgaaaaag 240
                   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagaaaaagaacaatcacttacatcaaaattagcacgtttaaaagattcttatgaaaaag 240

                                                                       
Query: 241 aaggattaagaaaagcagtagagggtatcattattattcatgatcatggtcatcctcata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaggattaagaaaagcagtagagggtatcattattattcatgatcatggtcatcctcata 300

                                                                       
Query: 301 tattacttttacaagataataattattttaaattaccgggaggtaaacttaaaccaggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tattacttttacaagataataattattttaaattaccgggaggtaaacttaaaccaggag 360

                                                                       
Query: 361 aaaatgaaattgatggacttataagaaaattaacnnnnnnnctatcaccaacaggtactc 420
           ||||||||||||||||||||||||||||||||||       |||||||||||||||||||
Sbjct: 361 aaaatgaaattgatggacttataagaaaattaacaaaaaaactatcaccaacaggtactc 420

                                                                       
Query: 421 ctgtatcagatgcaccttgggagattggtgatcatgtttcaacatggtggagaccaaatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ctgtatcagatgcaccttgggagattggtgatcatgtttcaacatggtggagaccaaatt 480

                                                                       
Query: 481 ttgaaccatccctttttccatatattccttctcatataactaaaccaaaagaatgtaaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttgaaccatccctttttccatatattccttctcatataactaaaccaaaagaatgtaaaa 540

                                                                       
Query: 541 aactatttgttgttacccttcctgaaaaatgtaaatttgctgtttcaaataatttaagtt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aactatttgttgttacccttcctgaaaaatgtaaatttgctgtttcaaataatttaagtt 600

                                                                       
Query: 601 taattgctgtgtcactttatgaaatttataataattctcaaagatatggtgctgtaattt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 taattgctgtgtcactttatgaaatttataataattctcaaagatatggtgctgtaattt 660

                                                                       
Query: 661 caagtattcctgcactcattagtagatatactttcgtttatctcaatgtagattagatat 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 caagtattcctgcactcattagtagatatactttcgtttatctcaatgtagattagatat 720

            
Query: 721 c 721
           |
Sbjct: 721 c 721


>Contig-U11680-1 (Contig-U11680-1Q) /CSM_Contig/Contig-U11680-1Q.Seq.d
          Length = 3172

 Score = 36.2 bits (18), Expect = 0.054
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 221  aaaagattcttatgaaaa 238
            ||||||||||||||||||
Sbjct: 1009 aaaagattcttatgaaaa 1026


>Contig-U09402-1 (Contig-U09402-1Q) /CSM_Contig/Contig-U09402-1Q.Seq.d
          Length = 1150

 Score = 36.2 bits (18), Expect = 0.054
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                            
Query: 15 tttattgtttttgttttt 32
          ||||||||||||||||||
Sbjct: 36 tttattgtttttgttttt 19


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,971
Number of Sequences: 6905
Number of extensions: 13971
Number of successful extensions: 1848
Number of sequences better than 10.0: 151
length of query: 773
length of database: 5,674,871
effective HSP length: 16
effective length of query: 757
effective length of database: 5,564,391
effective search space: 4212243987
effective search space used: 4212243987
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7.13
Homology vs DNA 
Query= Contig-U05201-1 (Contig-U05201-1Q) /CSM_Contig/Contig-U05201-1Q.Seq.d
         (773 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU266162) Dictyostelium discoideum vegetative cDNA clone:VS...   634   0.0    2
(AU266163) Dictyostelium discoideum vegetative cDNA clone:VS...   599   0.0    2
(C89817) Dictyostelium discoideum slug cDNA, clone SSG192.        632   e-177  1
(AU073123) Dictyostelium discoideum slug cDNA, clone SSG192.      204   e-106  3
(FL685530) Quail_Brain_Rev_RDX_14d_1C_075_C10_1 Northern bob...    46   1e-05  2
(CP000111) Prochlorococcus marinus str. MIT 9312, complete g...    40   0.002  17
(EH285253) Q2_Reed_1DPH_cDNA_02_G12_183.F 1d_posthatch Melea...    38   0.002  2
(CJ428869) Molgula tectiformis cDNA, larva clone:mtlv012o20,...    46   0.002  2
(CJ422840) Molgula tectiformis cDNA, larva clone:mtlv011f21,...    46   0.002  2
(DN506860) HL01019A2H07 Equine lymphocyte cDNA Library Equus...    46   0.002  2
(CJ412000) Molgula tectiformis cDNA, larva clone:mtlv011f21,...    46   0.002  2
(CJ358041) Molgula tectiformis cDNA, cleaving embryo clone:m...    46   0.002  2
(CJ344128) Molgula tectiformis cDNA, embryo just before hatc...    46   0.002  2
(CJ412518) Molgula tectiformis cDNA, larva clone:mtlv012o20,...    46   0.002  2
(CJ357872) Molgula tectiformis cDNA, cleaving embryo clone:m...    46   0.002  2
(DN505024) HL01014A1A11 Equine lymphocyte cDNA Library Equus...    46   0.002  2
(DN506102) HL01017A1G08 Equine lymphocyte cDNA Library Equus...    46   0.002  2
(FM904692) Brachionus plicatilis EST 5' end, clone sb101P002...    42   0.002  2
(FM912623) Brachionus plicatilis EST 5' end, clone sb102P001...    42   0.002  2
(CX596985) CT020015B20F12 Equine Articular Cartilage cDNA Li...    46   0.002  2
(CU400444) Eucalyptus gunnii EST from cold-acclimated leaves...    36   0.002  3
(BG882495) sae89h08.y1 Gm-c1065 Glycine max cDNA clone GENOM...    38   0.004  3
(BE555749) sp93d11.y1 Gm-c1045 Glycine max cDNA clone GENOME...    38   0.005  3
(BQ453890) sap01f05.y1 Gm-c1081 Glycine max cDNA clone SOYBE...    38   0.005  3
(BQ454009) sap03e05.y1 Gm-c1081 Glycine max cDNA clone SOYBE...    38   0.006  3
(FF488144) G708P514RE11.T0 Acorn worm normalized gastrula pE...    36   0.007  2
(EG549003) RrLX3a34b20f1 250DPH (.) Rutilus rutilus cDNA clo...    40   0.007  2
(FF486697) G708P5122RB10.T0 Acorn worm normalized gastrula p...    36   0.007  2
(FF494962) G708P530RA10.T0 Acorn worm normalized gastrula pE...    36   0.007  2
(FF496179) G708P538RE3.T0 Acorn worm normalized gastrula pEx...    36   0.007  2
(FF626662) G825P5322RG1.T0 Acorn worm normalized gastrula pE...    36   0.007  2
(FF631372) G825P548RA6.T0 Acorn worm normalized gastrula pEx...    36   0.007  2
(FF494322) G708P526RF4.T0 Acorn worm normalized gastrula pEx...    36   0.007  2
(FF494961) G708P530FA10.T0 Acorn worm normalized gastrula pE...    36   0.007  2
(FF440218) G142P60260RH6.T0 Acorn worm juvenile pCMVSport6 l...    36   0.007  2
(FF496178) G708P538FE3.T0 Acorn worm normalized gastrula pEx...    36   0.007  2
(FF485937) G708P5112RG8.T0 Acorn worm normalized gastrula pE...    36   0.007  2
(FF456921) G50P6020FC10.T0 Acorn worm gastrula/neurula pCMVS...    36   0.007  2
(FF452421) G178P60153RH6.T0 Acorn worm gastrula/neurula pCMV...    36   0.007  2
(FF453658) G178P60170RE2.T0 Acorn worm gastrula/neurula pCMV...    36   0.007  2
(FF631371) G825P548FA6.T0 Acorn worm normalized gastrula pEx...    36   0.007  2
(FF494321) G708P526FF4.T0 Acorn worm normalized gastrula pEx...    36   0.007  2
(FK014570) GLNBQ49TF JCVI-SOY3 Glycine max cDNA 5', mRNA seq...    38   0.009  3
(FK000891) GLPAJ33TF JCVI-SOY1 Glycine max cDNA 5', mRNA seq...    38   0.010  3
(BD452937) Diagnosis of Diseases Associated with tumor suppr...    34   0.011  4
(AX251416) Sequence 384 from Patent WO0168912.                     34   0.011  4
(EV275407) GLMCH37TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq...    38   0.011  3
(AE014188) Plasmodium falciparum 3D7 chromosome 12, complete...    34   0.021  16
(DV802556) LB01321.CR_O21 GC_BGC-13 Bos taurus cDNA clone IM...    40   0.027  2
(BF691003) 602247038F1 NIH_MGC_62 Homo sapiens cDNA clone IM...    38   0.027  2
(FF626661) G825P5322FG1.T0 Acorn worm normalized gastrula pE...    36   0.028  2
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    36   0.028  16
(EW634131) rtes23_b14r1.y1 tes Sus scrofa cDNA 5', mRNA sequ...    46   0.030  2
(AW519531) up35a01.y1 Soares_mouse_NMGB_bcell Mus musculus c...    52   0.033  1
(DE890200) Macropus eugenii DNA, BAC clone: MEB1-066K11_F, 5...    36   0.047  3
(AM738051) Cucumis melo subsp. melo EST, clone 15d_13-D06-M13R.    40   0.072  2
(AC185038) Bos taurus clone CH240-270C18, WORKING DRAFT SEQU...    40   0.080  2
(AC106767) Homo sapiens chromosome 5 clone RP11-269M17, comp...    50   0.082  4
(DV632421) EST1101017 Melon mature fruit library Cucumis mel...    40   0.086  2
(BG599917) EST504812 cSTS Solanum tuberosum cDNA clone cSTS2...    40   0.088  2
(DV633346) EST1101942 Dulce mature fruit library Cucumis mel...    40   0.090  2
(AM730337) Cucumis melo subsp. agrestis EST, clone A_09-D09-...    40   0.091  2
(AJ560177) Antirrhinum majus EST, clone 018_1_12_i24.              42   0.092  2
(AM728581) Cucumis melo subsp. agrestis EST, clone A_24-F09-...    40   0.092  2
(CR589884) Zebrafish DNA sequence from clone CH211-206L14 in...    42   0.094  4
(EJ933792) 1093018818611 Global-Ocean-Sampling_GS-30-02-01-1...    44   0.100  2
(BC102697) Bos taurus nudix (nucleoside diphosphate linked m...    40   0.10   2
(CR849785) Normalized and Subtracted bovine endometrium tiss...    40   0.10   2
(EE815203) 020731ONDC220087HT ONDC Ovis aries cDNA, mRNA seq...    40   0.10   2
(DT821175) LB00218.CR_A05 GC_BGC-02 Bos taurus cDNA clone IM...    40   0.10   2
(DT825706) LB00239.CR_N13 GC_BGC-02 Bos taurus cDNA clone IM...    40   0.10   2
(EE792469) 020709OMLT1021003HT OMLT Ovis aries cDNA, mRNA se...    40   0.10   2
(FE007427) C0009285L08.P1KAM13F KN510 Bos taurus rectum from...    40   0.10   2
(FE012075) C0009502M06.P1KM13F KN510 Bos taurus rectum from ...    40   0.10   2
(EH141240) LB011110.CR_A02 GC_BGC-11 Bos taurus cDNA clone I...    40   0.10   2
(FE006776) C0009284M04.P1KAM13F KN510 Bos taurus rectum from...    40   0.10   2
(FE013609) C0009504G13.Q1KM13R KN510 M. bovis infected Bos t...    40   0.10   2
(FE007428) C0009285L08.Q1KM13R KN510 Bos taurus rectum from ...    40   0.10   2
(DY509927) sh3P0013O05_F.ab1 adult sheep fracture callus 10d...    40   0.10   2
(DT827840) LB00254.CR_G22 GC_BGC-02 Bos taurus cDNA clone IM...    40   0.10   2
(EV624830) LB01453.CR_I02 GC_BGC-14 Bos taurus cDNA clone IM...    40   0.10   2
(EH146006) LB01190.CR.1_K16 GC_BGC-11 Bos taurus cDNA clone ...    40   0.10   2
(FE018760) C0009511O17.Q1KM13R KN510 Bos taurus rectum from ...    40   0.10   2
(FE005990) C0009283K06.Q1KM13R KN510 Bos taurus uninfected D...    40   0.10   2
(FE012426) C0009503O24.P1KM13F KN510 Bos taurus rectum from ...    40   0.10   2
(EE819974) 010716ONDC033007HT ONDC Ovis aries cDNA, mRNA seq...    40   0.10   2
(FE003408) C0009279O22.Q1KM13R KN510 M. bovis infected Bos t...    40   0.10   2
(FE005989) C0009283K06.P1KAM13F KN510 Bos taurus uninfected ...    40   0.10   2
(CB170144) YIR603162924.R1 CSEQFXN45 pool of stomach librari...    40   0.10   2
(FE012517) C0009504G13.P1KM13F KN510 M. bovis infected Bos t...    40   0.10   2
(FE013368) C0009503O24.Q1KM13R KN510 Bos taurus rectum from ...    40   0.10   2
(DV802956) LB01323.CR_F20 GC_BGC-13 Bos taurus cDNA clone IM...    40   0.10   2
(EE353070) LB02945.CR_E14 GC_BGC-29 Bos taurus cDNA clone IM...    40   0.10   2
(DV839565) LB01125.CR_J15 GC_BGC-11 Bos taurus cDNA clone IM...    40   0.10   2
(FC305990) CAIC14899.rev CAIC Nematostella vectensis Nemve w...    40   0.10   2
(CB167770) FBB603000347.R1 CSEQFXN18 ovary Bos taurus cDNA, ...    40   0.10   2
(EH162073) LB01383.CR_A13 GC_BGC-13 Bos taurus cDNA clone IM...    40   0.10   2
(EH136159) LB01164.CR_G15 GC_BGC-11 Bos taurus cDNA clone IM...    40   0.10   2
(EE231459) LB02110.CR_F03 GC_BGC-21 Bos taurus cDNA clone IM...    40   0.10   2
(FE018759) C0009511O17.P1KM13F KN510 Bos taurus rectum from ...    40   0.10   2
(EE792907) 020709OMLT1012042HT OMLT Ovis aries cDNA, mRNA se...    40   0.10   2
(EJ934375) 1093018821491 Global-Ocean-Sampling_GS-30-02-01-1...    44   0.10   2
(DV083568) 327-384-40_C04_M13-FP Nematostella vectensis norm...    40   0.10   2
(DV804111) LB01327.CR_L12 GC_BGC-13 Bos taurus cDNA clone IM...    40   0.10   2
(EE818258) 010914ONDC209084HT ONDC Ovis aries cDNA, mRNA seq...    40   0.10   2
(AM028760) Bos taurus 3' EST, clone C0005917e05.                   40   0.10   2
(AM028312) Bos taurus 5' EST, clone C0005917e05.                   40   0.10   2
(FE024946) C0009258P08.P1KAM13F KN511 Ovis aries gastric lym...    40   0.10   2
(BI008046) MR4-RT0026-050201-101-h07 RT0026 Homo sapiens cDN...    46   0.10   2
(FC305991) CAIC14899.fwd CAIC Nematostella vectensis Nemve w...    40   0.10   2
(CB533443) 758073 MARC 6BOV Bos taurus cDNA 3', mRNA sequence.     40   0.10   2
(FE012887) C0009502M06.Q1KM13R KN510 Bos taurus rectum from ...    40   0.10   2
(CN789310) 4123758 BARC 8BOV Bos taurus cDNA clone 8BOV_37J2...    40   0.10   2
(DV844688) LB01220.CR_E07 GC_BGC-12 Bos taurus cDNA clone IM...    40   0.10   2
(FE006777) C0009284M04.Q1KM13R KN510 Bos taurus rectum from ...    40   0.10   2
(GO707100) 010731OASA029290HT OASA Ovis aries cDNA 5', mRNA ...    40   0.10   2
(AM734726) Cucumis melo subsp. melo EST, clone CI_21-E12-M13R.     40   0.10   2
(DV096107) 327-384-6_A10_T7 Nematostella vectensis normalize...    40   0.10   2
(AJ694097) Bos taurus EST, clone KN261-043_A22.                    40   0.10   2
(AJ692503) Bos taurus EST, clone KN261-027_J11.                    40   0.10   2
(DY176381) 000217BCEB008894HT BCEB Bos taurus cDNA 5', mRNA ...    40   0.10   2
(CU653911) ovine foetal ovary tissues ( Early folliculogenes...    40   0.11   2
(AM729323) Cucumis melo subsp. agrestis EST, clone A_17-A07-...    40   0.11   2
(CZ524118) GMW2-84D8a.g1 GMW2 Glycine max genomic, genomic s...    40   0.11   2
(GC697113) Sequence 12358 from patent US 6812339.                  50   0.13   1
(AC008541) Homo sapiens chromosome 5 clone CTC-498M5, comple...    50   0.13   1
(BE080954) QV1-BT0631-130300-111-d11 BT0631 Homo sapiens cDN...    46   0.14   2
(CQ677806) Sequence 22732 from Patent WO02070737.                  46   0.15   2
(GN398717) Sequence 22732 from Patent WO2002070737.                46   0.15   2
(GC619282) Sequence 22732 from patent US 7432049.                  46   0.15   2
(EW314702) rpldo0123_o12.y1 ldo Sus scrofa cDNA 5', mRNA seq...    46   0.15   2
(AA355845) EST64306 Jurkat T-cells VI Homo sapiens cDNA 5' e...    46   0.15   2
(AA621148) af61d07.s1 Soares_NhHMPu_S1 Homo sapiens cDNA clo...    46   0.15   2
(BE708150) MR0-HT0559-230500-021-b04 HT0559 Homo sapiens cDN...    46   0.15   2
(EW169034) rfbs3931b_p14.y1 fbs Sus scrofa cDNA 5', mRNA seq...    46   0.15   2
(AX397258) Sequence 1473 from Patent WO0212328.                    46   0.16   2
(AX208267) Sequence 107 from Patent WO0157207.                     46   0.16   2
(BM357298) 15III-G9 Triphysaria versicolor root-tip, early D...    38   0.16   2
(DR171106) 25_N15:A Triphysaria versicolor root-tip, early D...    38   0.17   2
(AX208229) Sequence 69 from Patent WO0157207.                      46   0.17   2
(AX197613) Sequence 69 from Patent WO0151513.                      46   0.17   2
(BE813780) QV0-BN0042-230600-283-e05 BN0042 Homo sapiens cDN...    46   0.17   2
(AA374030) EST86119 HSC172 cells I Homo sapiens cDNA 5' end,...    46   0.17   2
(BE813773) QV0-BN0042-230600-283-c02 BN0042 Homo sapiens cDN...    46   0.18   2
(AJ655506) Sus scrofa EST, clone C0005190_K19.                     46   0.19   2
(AA236749) zr76b10.s1 Soares_NhHMPu_S1 Homo sapiens cDNA clo...    46   0.19   2
(AI126192) qd86e03.x1 Soares_testis_NHT Homo sapiens cDNA cl...    46   0.19   2
(AI126190) qd86e01.x1 Soares_testis_NHT Homo sapiens cDNA cl...    46   0.19   2
(DB481810) Homo sapiens hippocampus cDNA, RIKEN full-length ...    46   0.19   2
(BF918624) CM0-NT0133-131000-616-a03 NT0133 Homo sapiens cDN...    46   0.19   2
(AA236420) zr54h07.s1 Soares_NhHMPu_S1 Homo sapiens cDNA clo...    46   0.19   2
(AA601076) nm99h09.s1 NCI_CGAP_Co9 Homo sapiens cDNA clone I...    46   0.20   2
(CP000979) Borrelia duttonii Ly plasmid pl165, complete sequ...    38   0.20   6
(AJ654373) Sus scrofa EST, clone C0005186_A12.                     46   0.20   2
(EW619890) rsug01_g16.y1 sug Sus scrofa cDNA 5', mRNA sequence.    46   0.20   2
(BF088003) PM1-HT0628-150900-014-f11 HT0628 Homo sapiens cDN...    46   0.20   2
(BU431041) UI-HF-BN0-afj-c-02-0-UI.r1 NIH_MGC_50 Homo sapien...    46   0.21   2
(D16927) Homo sapiens HepG2 3' region cDNA, clone hmd3h09.         46   0.21   2
(BU429610) UI-HF-BN0-aek-c-07-0-UI.r2 NIH_MGC_50 Homo sapien...    46   0.21   2
(AI123768) oo25a05.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapie...    46   0.21   2
(DB522719) Homo sapiens testis cDNA, RIKEN full-length enric...    46   0.21   2
(AX197653) Sequence 108 from Patent WO0151513.                     46   0.21   2
(R76069) yi60g02.r1 Soares placenta Nb2HP Homo sapiens cDNA ...    46   0.21   2
(BE172465) MR0-HT0559-270300-008-e01 HT0559 Homo sapiens cDN...    46   0.21   2
(EU306659) Medicago truncatula zinc finger protein, GH1 prot...    42   0.21   9
(AA025539) ze85a03.s1 Soares_fetal_heart_NbHH19W Homo sapien...    46   0.22   2
(AA738354) nx19c01.s1 NCI_CGAP_GC3 Homo sapiens cDNA clone I...    46   0.22   2
(BM667686) UI-E-DX0-ags-h-02-0-UI.s1 UI-E-DX0 Homo sapiens c...    46   0.22   2
(AI183599) qe27e11.x1 Soares_fetal_lung_NbHL19W Homo sapiens...    46   0.22   2
(DB506978) Homo sapiens testis cDNA, RIKEN full-length enric...    46   0.22   2
(EW599709) rste17_f9.y1 ste Sus scrofa cDNA 5', mRNA sequence.     46   0.22   2
(BG753954) 602709476F1 NIH_MGC_48 Homo sapiens cDNA clone IM...    46   0.22   2
(EW403851) rmgp19_p9.y1 mgp Sus scrofa cDNA 5', mRNA sequence.     46   0.22   2
(AW340220) hc94g08.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ...    46   0.23   2
(DB476730) Homo sapiens hippocampus cDNA, RIKEN full-length ...    46   0.23   2
(BQ027395) UI-H-CO0-aqr-e-06-0-UI.s1 NCI_CGAP_Sub9 Homo sapi...    46   0.23   2
(AA887058) oi13b01.s1 NCI_CGAP_GC4 Homo sapiens cDNA clone I...    46   0.23   2
(AI340955) qo82d01.x1 NCI_CGAP_Kid5 Homo sapiens cDNA clone ...    46   0.23   2
(EW632439) rtes27_k4.y1 tes Sus scrofa cDNA 5', mRNA sequence.     46   0.23   2
(AA926887) om25e03.s1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ...    46   0.23   2
(EW642515) rthg24_m17.y1 thg Sus scrofa cDNA 5', mRNA sequence.    46   0.23   2
(AI126195) qd86e06.x1 Soares_testis_NHT Homo sapiens cDNA cl...    46   0.23   2
(AA987755) or75b12.s1 NCI_CGAP_Lu5 Homo sapiens cDNA clone I...    46   0.23   2
(BM992454) UI-H-DF1-auj-l-03-0-UI.s1 NCI_CGAP_DF1 Homo sapie...    46   0.23   2
(AI804477) tc71g03.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clo...    46   0.24   2
(AJ656202) Sus scrofa EST, clone C0005192_G21.                     46   0.24   2
(AJ656045) Sus scrofa EST, clone C0005192_F21.                     46   0.24   2
(CB476154) jns117_A04.f jns Sus scrofa cDNA 5', mRNA sequence.     46   0.24   2
(EW228470) rhea39_f5.y1 hea Sus scrofa cDNA 5', mRNA sequence.     46   0.24   2
(BE786402) 601474586F1 NIH_MGC_68 Homo sapiens cDNA clone IM...    46   0.24   2
(AI040234) ox56d07.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clo...    46   0.25   2
(AI341727) qq96d07.x1 Soares_total_fetus_Nb2HF8_9w Homo sapi...    46   0.25   2
(AV772249) Lotus japonicus cDNA clone:MPD033c10_f, 3' end.         34   0.25   3
(DB283695) Homo sapiens cDNA clone UTERU3011367, 5' end, mRN...    46   0.25   2
(AJ659699) Sus scrofa EST, clone C0005217_B23.                     46   0.25   2
(AW665697) hi93c05.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ...    46   0.25   2
(AI435819) th74d07.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clo...    46   0.25   2
(AL844509) Plasmodium falciparum 3D7 chromosome 13.                36   0.25   14
(BU157763) AGENCOURT_7975204 NIH_MGC_110 Homo sapiens cDNA c...    46   0.25   2
(FD610074) susfleck_LV_N_71_A02 SUSFLECK Liver Normalized Su...    46   0.25   2
(BP369006) Homo sapiens cDNA clone: TST00819, Sugano cDNA li...    46   0.26   2
(EW163405) rfat0108_k4.y1 fat Sus scrofa cDNA 5', mRNA seque...    46   0.26   2
(CV867775) PDUts1047A08 Porcine testis cDNA library I Sus sc...    46   0.26   2
(BP296170) Homo sapiens cDNA clone: MPC00316, Sugano cDNA li...    46   0.26   2
(BF972986) 602241288F1 NIH_MGC_46 Homo sapiens cDNA clone IM...    46   0.26   2
(AI436255) th75g12.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clo...    46   0.27   2
(W92983) zd93c01.s1 Soares_fetal_heart_NbHH19W Homo sapiens ...    46   0.27   2
(AJ656144) Sus scrofa EST, clone C0005192_P04.                     46   0.27   2
(CB476486) jns120_E10.f jns Sus scrofa cDNA 5', mRNA sequence.     46   0.27   2
(DA108685) Homo sapiens cDNA clone BRACE3024948, 5' end, mRN...    46   0.27   2
(CV028864) 7485 Full Length cDNA from the Mammalian Gene Col...    46   0.27   2
(EY003710) CBAH3396.g1:P T. versicolor peonidin treated reve...    38   0.27   2
(BP234480) Homo sapiens cDNA clone: HCR03051, Sugano cDNA li...    46   0.27   2
(DC596407) Lotus japonicus mRNA, clone: MPD018e05_r, 5' end ...    34   0.27   3
(DA245751) Homo sapiens cDNA clone BRAWH3044507, 5' end, mRN...    46   0.27   2
(BM717684) UI-E-EJ0-ahn-a-13-0-UI.r1 UI-E-EJ0 Homo sapiens c...    46   0.27   2
(BG775344) 602650588T1 NIH_MGC_40 Homo sapiens cDNA clone IM...    46   0.28   2
(DR003152) TC106112 Human fetal brain, large insert, pCMV ex...    46   0.28   2
(CN354285) 17000532572160 GRN_ES Homo sapiens cDNA 5', mRNA ...    46   0.28   2
(CA441342) UI-H-DP0-avc-l-12-0-UI.s1 NCI_CGAP_Fs1 Homo sapie...    46   0.28   2
(BE795573) 601592568F1 NIH_MGC_7 Homo sapiens cDNA clone IMA...    46   0.28   2
(CD370548) UI-H-FT1-bkc-b-21-0-UI.s1 NCI_CGAP_FT1 Homo sapie...    46   0.28   2
(BQ603254) MI-P-NA-afr-c-09-1-UM.s1 MI-P-NA Sus scrofa cDNA ...    46   0.28   2
(BQ026957) UI-H-ED0-axm-i-16-0-UI.s1 NCI_CGAP_ED0 Homo sapie...    46   0.28   2
(CA306734) UI-H-FT1-bht-d-07-0-UI.s1 NCI_CGAP_FT1 Homo sapie...    46   0.28   2
(CX060865) PDUts2050G05 Porcine testis cDNA library II Sus s...    46   0.29   2
(AI570711) tm79h01.x1 NCI_CGAP_Brn25 Homo sapiens cDNA clone...    46   0.29   2
(AC004688) Plasmodium falciparum chromosome 12 clone PFYAC69...    36   0.29   9
(DA433736) Homo sapiens cDNA clone CTONG1000555, 5' end, mRN...    46   0.29   2
(EY003709) CBAH3396.b1:P T. versicolor peonidin treated reve...    38   0.29   2
(BE408024) 601299475F1 NIH_MGC_21 Homo sapiens cDNA clone IM...    46   0.29   2
(CX063605) PDUts2080F04 Porcine testis cDNA library II Sus s...    46   0.29   2
(BU629205) UI-H-FL0-bdq-j-21-0-UI.s1 NCI_CGAP_FL0 Homo sapie...    46   0.29   2
(FD600166) susfleck_LV_47_B08 SUSFLECK Liver Sus scrofa cDNA...    46   0.29   2
(BQ009156) UI-H-ED1-axx-g-18-0-UI.s1 NCI_CGAP_ED1 Homo sapie...    46   0.29   2
(CV867878) PDUts1048B07 Porcine testis cDNA library I Sus sc...    46   0.30   2
(DA326737) Homo sapiens cDNA clone BRHIP3022338, 5' end, mRN...    46   0.30   2
(AI149553) qc70h07.x1 Soares_placenta_8to9weeks_2NbHP8to9W H...    46   0.30   2
(CN354288) 17000424036111 GRN_ES Homo sapiens cDNA 5', mRNA ...    46   0.30   2
(BP438494) Sus scrofa mRNA, clone:LNG010059F07, 5' end, expr...    46   0.30   2
(CR625053) full-length cDNA clone CS0DI004YJ20 of Placenta C...    46   0.30   2
(CF179631) 814628 MARC 3PIG Sus scrofa cDNA 3', mRNA sequence.     46   0.30   2
(AL544049) human full-length cDNA 5-PRIME end of clone CS0DI...    46   0.30   2
(FF546015) MOPD323TF MOP Vigna unguiculata cDNA 5', mRNA seq...    38   0.30   2
(FD588704) susfleck_PG_13_G07 SUSFLECK Pituitary Gland Sus s...    46   0.30   2
(CU395885) Eucalyptus gunnii EST from cold-acclimated leaves...    38   0.30   2
(BG500074) 602545881F1 NIH_MGC_60 Homo sapiens cDNA clone IM...    46   0.30   2
(BE297129) 601177520F1 NIH_MGC_17 Homo sapiens cDNA clone IM...    46   0.30   2
(BG683512) 602651369T1 NIH_MGC_47 Homo sapiens cDNA clone IM...    46   0.31   2
(BI826486) 603076906F1 NIH_MGC_119 Homo sapiens cDNA clone I...    46   0.31   2
(AY891817) Synthetic construct Homo sapiens clone FLH027706....    46   0.31   2
(CR456919) Homo sapiens full open reading frame cDNA clone R...    46   0.31   2
(CN354287) 17000424717533 GRN_ES Homo sapiens cDNA 5', mRNA ...    46   0.31   2
(AJ953782) Sus scrofa EST, clone C0007744b14, 5' direction.        46   0.32   2
(CR979166) RZPD Homo sapiens cDNA expression clone RZPDp9016...    46   0.32   2
(BF667050) 602122018F1 NIH_MGC_56 Homo sapiens cDNA clone IM...    46   0.32   2
(BE278244) 601180140F1 NIH_MGC_21 Homo sapiens cDNA clone IM...    46   0.32   2
(CN354278) 17000583025542 GRN_PREHEP Homo sapiens cDNA 5', m...    46   0.32   2
(DV227689) EST-AR171H05 Infected Porcine Peripheral Blood Ce...    46   0.32   2
(CN354277) 17000470827715 GRN_ES Homo sapiens cDNA 5', mRNA ...    46   0.33   2
(AM393219) Synthetic construct Homo sapiens clone IMAGE:1000...    46   0.33   2
(AM392991) Synthetic construct Homo sapiens clone IMAGE:1000...    46   0.33   2
(DQ895336) Synthetic construct Homo sapiens clone IMAGE:1000...    46   0.33   2
(DQ892142) Synthetic construct clone IMAGE:100004772; FLH183...    46   0.33   2
(AJ952487) Sus scrofa EST, clone C0007744b14, 3' direction.        46   0.33   2
(BI461230) 603206553F1 NIH_MGC_97 Homo sapiens cDNA clone IM...    46   0.33   2
(DN995223) TC115739 Human adult whole brain, large insert, p...    46   0.33   2
(CJ020730) Sus scrofa mRNA, clone:SPL01A120086, 5' end, expr...    46   0.33   2
(CA426739) UI-H-FE1-bei-g-17-0-UI.s1 NCI_CGAP_FE1 Homo sapie...    46   0.33   2
(DV110806) EST-MOA146C10 Toxoplasma gondii Tachyzoite Librar...    46   0.33   2
(CN354280) 17000600108817 GRN_PRENEU Homo sapiens cDNA 5', m...    46   0.33   2
(FG892695) UCRVU08_CCNS12424_b1 Cowpea IT97K-461-4 Mixed Tis...    38   0.33   2
(CF135765) UI-HF-BN0-amm-b-03-0-UI.r1 NIH_MGC_50 Homo sapien...    46   0.33   2
(BU633527) UI-H-FL1-bgv-a-07-0-UI.s1 NCI_CGAP_FL1 Homo sapie...    46   0.33   2
(BM674885) UI-E-EJ0-ahn-a-13-0-UI.s1 UI-E-EJ0 Homo sapiens c...    46   0.33   2
(BE278267) 601179413F1 NIH_MGC_21 Homo sapiens cDNA clone IM...    46   0.34   2
(BX667509) Sus Scrofa library (scag) clone scag0002.a.05, 3p...    46   0.34   2
(BX667520) Sus Scrofa library (scag) clone scag0002.b.05, 3p...    46   0.34   2
(BG721919) 602695648F1 NIH_MGC_97 Homo sapiens cDNA clone IM...    46   0.34   2
(AW025312) wu73d02.x1 NCI_CGAP_Kid3 Homo sapiens cDNA clone ...    46   0.34   2
(FK000892) GLPAJ33TR JCVI-SOY1 Glycine max cDNA 5', mRNA seq...    38   0.34   2
(FF384587) MOOAC35TF MOO Vigna unguiculata cDNA 5', mRNA seq...    38   0.34   2
(BX667521) Sus Scrofa library (scag) clone scag0002.b.05, 5p...    46   0.34   2
(BX664799) Sus Scrofa library (scag) clone scag0002.a.05, 5p...    46   0.34   2
(BG207248) RST26717 Athersys RAGE Library Homo sapiens cDNA,...    46   0.34   2
(BE394302) 601311432F1 NIH_MGC_44 Homo sapiens cDNA clone IM...    46   0.34   2
(EA063521) Sequence 1346 from patent US 7171311.                   46   0.34   2
(DL476833) Treating Inflammation using a Biological Agent th...    46   0.34   2
(DD416011) Diagnosis and Prognosis of Breast Cancer Patients.      46   0.34   2
(DD130760) Diagnosis and Prognosis of Breast Cancer Patients.      46   0.34   2
(CS119403) Sequence 1450 from Patent WO2005054508.                 46   0.34   2
(CS068540) Sequence 19 from Patent WO2005030241.                   46   0.34   2
(GP321673) Sequence 1346 from patent US 7514209.                   46   0.34   2
(AJ001810) Homo sapiens mRNA for pre-mRNA cleavage factor I ...    46   0.34   2
(BQ574754) UI-H-EZ1-bbc-c-15-0-UI.s1 NCI_CGAP_Ch2 Homo sapie...    46   0.34   2
(GC692659) Sequence 2032 from patent US 6812339.                   46   0.34   2
(BI905827) 603062791F1 NIH_MGC_118 Homo sapiens cDNA clone I...    46   0.34   2
(BI184176) UNL-P-FN-cj-g-03-0-UNL.s1 UNL-P-FN Sus scrofa cDN...    46   0.35   2
(BU629618) UI-H-FL0-bdj-n-07-0-UI.s1 NCI_CGAP_FL0 Homo sapie...    46   0.35   2
(CF593366) AGENCOURT_15623918 NIH_MGC_147 Homo sapiens cDNA ...    46   0.35   2
(CD366398) UI-H-FT1-bjt-d-05-0-UI.s1 NCI_CGAP_FT1 Homo sapie...    46   0.35   2
(FF547955) MOPDA89TFB MOP Vigna unguiculata cDNA, mRNA seque...    38   0.35   2
(BI832449) 603082228F1 NIH_MGC_120 Homo sapiens cDNA clone I...    46   0.35   2
(BI861659) 603389331F1 NIH_MGC_87 Homo sapiens cDNA clone IM...    46   0.35   2
(GO007447) LJGB651TF JCVI-LJ1 Lotus japonicus cDNA 5', mRNA ...    34   0.35   3
(BX109440) RZPD Homo sapiens cDNA clone IMAGp998H201851 = IM...    46   0.35   2
(FC161637) 1106908675415 BABEVPN-C-01-1-7KB Papio anubis cDN...    46   0.35   2
(GO024355) LJMCG69TF JCVI-LJ2 Lotus japonicus cDNA 5', mRNA ...    34   0.36   3
(CX166779) HESC2_44_E03.g1_A035 NIH_MGC_258 Homo sapiens cDN...    46   0.36   2
(CD652397) AGENCOURT_14557083 NIA Human H1 Embryonic Stem Ce...    46   0.36   2
(FD591744) susfleck_PG_72_D11 SUSFLECK Pituitary Gland Sus s...    46   0.36   2
(EY144132) CBTH8949.g3_J05.ab1:P Triphysaria pusilla root ti...    38   0.36   2
(BU598605) AGENCOURT_8822611 NIH_MGC_142 Homo sapiens cDNA c...    46   0.36   2
(CX164708) HESC2_19_H04.g1_A035 NIH_MGC_258 Homo sapiens cDN...    46   0.36   2
(FD628098) susfleck_FC_N_32_F06 SUSFLECK Fat Cell Normalized...    46   0.36   2
(BW981376) Sus scrofa mRNA, clone:ITT010060H01, 5' end, expr...    46   0.36   2
(CN643152) ILLUMIGEN_MCQ_7296 Katze_MMPL2 Macaca mulatta cDN...    46   0.36   2
(CD655709) AGENCOURT_14551270 NIA Human H1 Embryonic Stem Ce...    46   0.37   2
(BQ422298) AGENCOURT_7764914 NIH_MGC_92 Homo sapiens cDNA cl...    46   0.37   2
(BP462842) Sus scrofa mRNA, clone:UTR010057A08, 5' end, expr...    46   0.37   2
(FF556706) MOPE350TF MOP Vigna unguiculata cDNA 5', mRNA seq...    38   0.37   2
(FK015101) GLNBW62TF JCVI-SOY3 Glycine max cDNA 5', mRNA seq...    38   0.37   2
(CJ013426) Sus scrofa mRNA, clone:MLN01A040073, 5' end, expr...    46   0.37   2
(BE784364) 601473830F1 NIH_MGC_68 Homo sapiens cDNA clone IM...    46   0.37   2
(BF690485) 602186959T1 NIH_MGC_49 Homo sapiens cDNA clone IM...    46   0.37   2
(FF544994) MOPCA10TF MOP Vigna unguiculata cDNA 5', mRNA seq...    38   0.37   2
(FF543012) MOPBZ92TF MOP Vigna unguiculata cDNA 5', mRNA seq...    38   0.37   2
(EY144131) CBTH8949.b1_J05.ab1:P Triphysaria pusilla root ti...    38   0.37   2
(CD643916) AGENCOURT_14550482 NIA Human H1 Embryonic Stem Ce...    46   0.37   2
(BM051092) 603633993F1 NIH_MGC_43 Homo sapiens cDNA clone IM...    46   0.37   2
(CX166780) HESC2_44_E04.g1_A035 NIH_MGC_258 Homo sapiens cDN...    46   0.37   2
(BP436781) Sus scrofa mRNA, clone:LNG010043D11, 5' end, expr...    46   0.37   2
(AK312721) Homo sapiens cDNA, FLJ93125, highly similar to Ho...    46   0.37   2
(DB807174) Sus scrofa mRNA, clone:LNG010043D11, 3' end, expr...    46   0.37   2
(AC187225) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    40   0.38   3
(FI736233) BOT01-82F3TR BOT01 Brassica oleracea genomic clon...    46   0.38   2
(BX424560) human full-length cDNA 5-PRIME end of clone CS0DA...    46   0.38   2
(CD657128) AGENCOURT_14541622 NIA Human H1 Embryonic Stem Ce...    46   0.38   2
(BG105274) 602312856F1 NIH_MGC_84 Homo sapiens cDNA clone IM...    46   0.38   2
(BU747610) CH3#014_B02T3 Canine heart normalized cDNA Librar...    38   0.38   2
(GH536224) CCUH3561.b1 CCUH Peromyscus maniculatus bairdii B...    38   0.38   2
(GH461579) CCUA3714.b1 CCUA Peromyscus polionotus subgrisieu...    38   0.38   2
(GH526317) CCUG6384.b1 CCUG Peromyscus maniculatus bairdii B...    38   0.38   2
(BU849545) AGENCOURT_10436982 NIH_MGC_109 Homo sapiens cDNA ...    46   0.38   2
(DN751207) GL-Cf-8000 GLGC-LIB0001-cf Canis familiaris Norma...    38   0.38   2
(DR105195) JHU082B11L736 Canine cardiovascular system biased...    38   0.38   2
(BE900121) 601673027F1 NIH_MGC_21 Homo sapiens cDNA clone IM...    46   0.38   2
(DN269670) LIB30321_042_E03_SP6_1 LIB30321 Canis lupus famil...    38   0.38   2
(FF544169) MOPDG28TF MOP Vigna unguiculata cDNA 5', mRNA seq...    38   0.38   2
(DE418713) Bombyx mori genomic DNA, BAC clone:18J1F.               34   0.38   2
(DN356049) LIB3626-008-Q6-K6-F9 LIB3626 Canis lupus familiar...    38   0.38   2
(FM911416) Brachionus plicatilis EST 5' end, clone sb102P000...    34   0.38   2
(DN272180) LIB30321_022_D07_SP6_1 LIB30321 Canis lupus famil...    38   0.38   2
(BG337793) 602435372F1 NIH_MGC_46 Homo sapiens cDNA clone IM...    46   0.38   2
(AL521226) human full-length cDNA 5-PRIME end of clone CS0DB...    46   0.39   2
(BG035501) 602325554F1 NIH_MGC_90 Homo sapiens cDNA clone IM...    46   0.39   2
(AJ962278) Sus scrofa EST, clone C0007755m04, 3' direction.        46   0.39   2
(BQ932357) AGENCOURT_8878507 NIH_MGC_71 Homo sapiens cDNA cl...    46   0.39   2
(BQ441146) AGENCOURT_7889696 NIH_MGC_71 Homo sapiens cDNA cl...    46   0.39   2
(DY080663) 000829BEMN004611HT BEMN Bos taurus cDNA 5', mRNA ...    38   0.39   2
(DY069795) 000829BEMN004627HT BEMN Bos taurus cDNA 5', mRNA ...    38   0.39   2
(BW979727) Sus scrofa mRNA, clone:ITT010041G08, 5' end, expr...    46   0.39   2
(BQ434343) AGENCOURT_7895991 NIH_MGC_71 Homo sapiens cDNA cl...    46   0.39   2
(BF793042) 602254010F1 NIH_MGC_84 Homo sapiens cDNA clone IM...    46   0.39   2
(BQ050426) AGENCOURT_7051044 NIH_MGC_71 Homo sapiens cDNA cl...    46   0.39   2
(EY278379) 1106466690870 03BABOON-C-01-1-3KB Papio anubis cD...    46   0.40   2
(AL520678) human full-length cDNA 5-PRIME end of clone CS0DB...    46   0.40   2
(AC121180) Rattus norvegicus clone CH230-94O24, *** SEQUENCI...    46   0.40   5
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    34   0.40   12
(BC001403) Homo sapiens nudix (nucleoside diphosphate linked...    46   0.40   2
(BU554067) AGENCOURT_10368688 NIH_MGC_109 Homo sapiens cDNA ...    46   0.40   2
(BQ954837) AGENCOURT_8819135 NIH_MGC_18 Homo sapiens cDNA cl...    46   0.40   2
(BU955778) AGENCOURT_10621085 NIH_MGC_107 Homo sapiens cDNA ...    46   0.40   2
(FF547215) MOPDA89TF MOP Vigna unguiculata cDNA 5', mRNA seq...    38   0.40   2
(BX352949) human full-length cDNA 5-PRIME end of clone CS0DB...    46   0.40   2
(BU155786) AGENCOURT_7971664 NIH_MGC_72 Homo sapiens cDNA cl...    46   0.40   2
(AL580689) human full-length cDNA 5-PRIME end of clone CS0DJ...    46   0.41   2
(BU932020) AGENCOURT_10485808 NIH_MGC_109 Homo sapiens cDNA ...    46   0.41   2
(BE901881) 601675484F1 NIH_MGC_21 Homo sapiens cDNA clone IM...    46   0.41   2
(AX346069) Sequence 1140 from Patent WO0200928.                    38   0.41   4
(BG422254) 602446889F1 NIH_MGC_14 Homo sapiens cDNA clone IM...    46   0.41   2
(BQ944195) AGENCOURT_8776770 NIH_MGC_18 Homo sapiens cDNA cl...    46   0.41   2
(AL521882) human full-length cDNA 5-PRIME end of clone CS0DB...    46   0.41   2
(CA489247) AGENCOURT_10809679 MAPcL Homo sapiens cDNA clone ...    46   0.42   2
(BU955898) AGENCOURT_10621396 NIH_MGC_107 Homo sapiens cDNA ...    46   0.42   2
(BD452921) Diagnosis of Diseases Associated with tumor suppr...    38   0.43   3
(AX345031) Sequence 102 from Patent WO0200928.                     38   0.43   3
(AX251400) Sequence 368 from Patent WO0168912.                     38   0.43   3
(BQ061895) AGENCOURT_6854864 NIH_MGC_99 Homo sapiens cDNA cl...    46   0.43   2
(BG391552) 602417091F1 NIH_MGC_92 Homo sapiens cDNA clone IM...    46   0.44   2
(CN647929) ILLUMIGEN_MCQ_29264 Katze_MMPB Macaca mulatta cDN...    46   0.44   2
(BG775648) 602650588F1 NIH_MGC_40 Homo sapiens cDNA clone IM...    46   0.44   2
(BU554146) AGENCOURT_10368980 NIH_MGC_109 Homo sapiens cDNA ...    46   0.45   2
(BQ233144) AGENCOURT_7570995 NIH_MGC_68 Homo sapiens cDNA cl...    46   0.45   2
(BM555849) AGENCOURT_6544449 NIH_MGC_88 Homo sapiens cDNA cl...    46   0.46   2
(CR616196) full-length cDNA clone CS0DJ008YG13 of T cells (J...    46   0.46   2
(BM800408) AGENCOURT_6419156 NIH_MGC_71 Homo sapiens cDNA cl...    46   0.46   2
(AL524091) human full-length cDNA 5-PRIME end of clone CS0DC...    46   0.48   2
(AK231895) Sus scrofa mRNA, clone:LNG010043D11, expressed in...    46   0.50   2
(AL535307) human full-length cDNA 5-PRIME end of clone CS0DF...    46   0.50   2
(AE014185) Plasmodium falciparum 3D7 chromosome 10, complete...    42   0.52   15
(BX890624) Zebrafish DNA sequence from clone DKEY-9I9 in lin...    48   0.52   1
(AY339193) Catharanthus roseus microsatellite sequence.            48   0.52   1
(FN357682) Schistosoma mansoni genome sequence supercontig S...    48   0.52   1
(AC156465) Bos taurus clone CH240-60C3, WORKING DRAFT SEQUEN...    48   0.52   1
(AC167038) Bos taurus clone CH240-193L4, WORKING DRAFT SEQUE...    48   0.52   1
(FH115371) CHO_OF3236xe12f1.ab1 CHO_OF3 Nicotiana tabacum ge...    48   0.52   1
(AM477180) Vitis vinifera contig VV78X275366.15, whole genom...    32   0.53   6
(CU019537) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.55   5
(AW233768) sf26e05.y1 Gm-c1028 Glycine max cDNA clone GENOME...    34   0.65   3
(AC175003) Oryctolagus cuniculus clone LB1-45M10, WORKING DR...    30   0.66   9
(BD453067) Diagnosis of Diseases Associated with tumor suppr...    32   0.70   7
(AX251546) Sequence 514 from Patent WO0168912.                     32   0.70   7
(AC215451) Solanum lycopersicum chromosome 2 clone C02SLe003...    34   0.71   7
(BE608537) sq36f07.y1 Gm-c1019 Glycine max cDNA clone GENOME...    34   0.72   3
(DT082727) 110401_A11_PTE7459PT5_085.seq Salt-treated full-l...    34   0.76   3
(CR621599) full-length cDNA clone CS0DC002YG04 of Neuroblast...    46   0.77   2
(CR617016) full-length cDNA clone CS0DB003YJ08 of Neuroblast...    46   0.77   2
(DT082824) 12-PTE-5403 Salt-treated full-length cDNA library...    34   0.77   3
(CR603883) full-length cDNA clone CS0DF009YG15 of Fetal brai...    46   0.78   2
(AB172174) Macaca fascicularis brain cDNA clone: QflA-17005,...    46   0.78   2
(AI283732) qi24d12.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clo...    44   0.82   2
(BU174421) AGENCOURT_8106653 NIH_MGC_112 Homo sapiens cDNA c...    44   0.86   2
(BU156889) AGENCOURT_8050392 NIH_MGC_112 Homo sapiens cDNA c...    44   0.86   2
(BU174540) AGENCOURT_8110496 NIH_MGC_112 Homo sapiens cDNA c...    44   0.87   2
(BU163287) AGENCOURT_8110494 NIH_MGC_112 Homo sapiens cDNA c...    44   0.87   2
(BQ888462) AGENCOURT_8072277 NIH_MGC_112 Homo sapiens cDNA c...    44   0.87   2
(BQ677216) AGENCOURT_8507980 NIH_MGC_112 Homo sapiens cDNA c...    44   0.87   2
(BU173595) AGENCOURT_8071406 NIH_MGC_112 Homo sapiens cDNA c...    44   0.87   2
(BU161205) AGENCOURT_7961061 NIH_MGC_112 Homo sapiens cDNA c...    44   0.87   2
(BQ677409) AGENCOURT_8210609 NIH_MGC_112 Homo sapiens cDNA c...    44   0.87   2
(AC138118) Mus musculus BAC clone RP24-219A21 from 8, comple...    46   0.89   3
(BU168765) AGENCOURT_8107761 NIH_MGC_112 Homo sapiens cDNA c...    44   0.91   2
(FC829938) CBHI3150.rev CBHI Metridium senile tentacle Metri...    32   0.91   3
(DT082565) 07-PTE-4723 Salt-treated full-length cDNA library...    34   0.94   3
(DT082500) 041402-1_D08_PTE-5975PT5_064.seq Salt-treated ful...    34   0.94   3
(AC189530) Brassica rapa subsp. pekinensis clone KBrH001C24,...    32   0.95   8
(AC212654) Solanum lycopersicum chromosome 7 clone C07SLm011...    34   0.96   6
(AX344573) Sequence 24 from Patent WO0200932.                      34   1.0    11
(AC207744) Zea mays chromosome 5 clone CH201-299F2; ZMMBBc02...    42   1.0    4
(FL679268) CIRNN001H09 CiRN Cichorium intybus cDNA 3', mRNA ...    36   1.1    2
(AC200107) Zea mays chromosome 10 clone CH201-445J17; ZMMBBc...    40   1.2    5
(AL356956) Human DNA sequence from clone RP11-538A16 on chro...    36   1.2    6
(GC698529) Sequence 13774 from patent US 6812339.                  46   1.2    3
(EV270858) GLMB046TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq...    34   1.2    3
(AC123647) Mus musculus chromosome 3, clone RP23-105J10, com...    46   1.2    3
(EH704393) CCIS3278.b1_K04.ab1 CCI(LMS) chicory Cichorium in...    36   1.3    2
(EH687582) CCIM12319.b1_M07.ab1 CCI(LMS) chicory Cichorium i...    36   1.3    2
(BU190700) AGENCOURT_7983896 NIH_MGC_112 Homo sapiens cDNA c...    44   1.3    2
(GC500330) Sequence 7 from patent US 7399465.                      46   1.3    2
(DL476821) Treating Inflammation using a Biological Agent th...    46   1.3    2
(DI033351) FACTORS AFFECTING TUMOR NECROSIS FACTOR RECEPTOR ...    46   1.3    2
(CS068528) Sequence 7 from Patent WO2005030241.                    46   1.3    2
(BD228412) IL-17 homologous polypeptide and its application ...    46   1.3    2
(AR758156) Sequence 7 from patent US 6955894.                      46   1.3    2
(AR705623) Sequence 7 from patent US 6930084.                      46   1.3    2
(AR691541) Sequence 7 from patent US 6911314.                      46   1.3    2
(AR359637) Sequence 7 from patent US 6593456.                      46   1.3    2
(AC009681) Homo sapiens chromosome 18 clone 71_D_3 map 18, *...    42   1.3    2
(EH673922) CCIL1191.b1_M09.ab1 CCI(LMS) chicory Cichorium in...    36   1.3    2
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    32   1.4    16
(AC026003) Homo sapiens chromosome 18, clone RP11-715P20, co...    38   1.4    5
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co...    34   1.4    17
(DV702920) CGN-49390 Seed of Late Development Stage Coffea c...    36   1.4    2
(DV704170) CGN-50888 Cherry of Early Development Stage Coffe...    36   1.4    2
(DV703212) CGN-49735 Seed of Late Development Stage Coffea c...    36   1.4    2
(DV703884) CGN-50545 Seed of Late Development Stage Coffea c...    36   1.4    2
(DV701803) CGN-48064 Seed of Late Development Stage Coffea c...    36   1.4    2
(DV698529) CGN-44199 Seed of Late Development Stage Coffea c...    36   1.4    2
(DV694995) CGN-39729 Seed of Late Development Stage Coffea c...    36   1.4    2
(DV695833) CGN-40814 Seed of Late Development Stage Coffea c...    36   1.4    2
(DV691416) CGN-35092 Leaf Coffea canephora cDNA clone cccl20...    36   1.4    2
(DV679835) CGN-18191 Seed of Middle Development Stage Coffea...    36   1.4    2
(DV698614) CGN-44299 Seed of Late Development Stage Coffea c...    36   1.4    2
(DV698612) CGN-44297 Seed of Late Development Stage Coffea c...    36   1.4    2
(DV663807) CGN-621 Pericarp Coffea canephora cDNA clone cccp...    36   1.4    2
(DV668204) CGN-6768 Seed of Middle Development Stage Coffea ...    36   1.4    2
(FK016456) GLNCC28TF JCVI-SOY3 Glycine max cDNA 5', mRNA seq...    34   1.5    3
(DX406453) GR_Sa0008G14.b1 Gossypium raimondii WGS library G...    42   1.6    2
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    36   1.6    17
(CU915590) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   1.7    6
(AC130106) Rattus norvegicus clone CH230-17N23, WORKING DRAF...    44   1.7    3
(FC829939) CBHI3150.fwd CBHI Metridium senile tentacle Metri...    32   1.7    3
(CX708675) gmrtDrNS01_38-C_M13R_H07_049.s1 Water stressed 5h...    34   1.7    3
(AC173003) Bos taurus clone CH240-526C10, WORKING DRAFT SEQU...    40   1.7    5
(DM015582) Insulin Sensitizer.                                     46   1.7    2
(BX537360) Homo sapiens mRNA; cDNA DKFZp686H1588 (from clone...    46   1.7    2
(FG988925) GLLCN45TF JCVI-SOY1 Glycine max cDNA 5', mRNA seq...    34   1.9    3
(AC163281) Mus musculus BAC clone RP23-443B19 from chromosom...    36   1.9    5
(EV266931) GLLBC72TF JCVI-SOY1 Glycine max cDNA 5', mRNA seq...    34   1.9    3
(CR940353) Theileria annulata genomic DNA chromosome 4.            36   1.9    16
(EJ535968) 1092955259281 Global-Ocean-Sampling_GS-29-01-01-1...    38   1.9    3
(BW659060) Glycine max cDNA clone: GMFL01-15-I09, 5'end.           34   2.0    3
(CU855780) Zebrafish DNA sequence from clone DKEY-110F2 in l...    46   2.0    1
(BX664745) Zebrafish DNA sequence from clone DKEY-242A8 in l...    46   2.0    1
(BC168149) Rattus norvegicus cleavage and polyadenylation sp...    46   2.0    1
(BC098748) Rattus norvegicus cleavage and polyadenylation sp...    46   2.0    1
(BC090834) Mus musculus nudix (nucleoside diphosphate linked...    46   2.0    1
(BC008270) Mus musculus nudix (nucleoside diphosphate linked...    46   2.0    1
(AC192829) Pan troglodytes BAC clone CH251-547A23 from chrom...    46   2.0    1

>(AU266162) Dictyostelium discoideum vegetative cDNA clone:VSG230,
           5' end single read.
          Length = 481

 Score =  634 bits (320), Expect(2) = 0.0
 Identities = 320/320 (100%)
 Strand = Plus / Plus


Query: 402 ctatcaccaacaggtactcctgtatcagatgcaccttgggagattggtgatcatgtttca 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 ctatcaccaacaggtactcctgtatcagatgcaccttgggagattggtgatcatgtttca 211


Query: 462 acatggtggagaccaaattttgaaccatccctttttccatatattccttctcatataact 521
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 acatggtggagaccaaattttgaaccatccctttttccatatattccttctcatataact 271


Query: 522 aaaccaaaagaatgtaaaaaactatttgttgttacccttcctgaaaaatgtaaatttgct 581
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaaccaaaagaatgtaaaaaactatttgttgttacccttcctgaaaaatgtaaatttgct 331


Query: 582 gtttcaaataatttaagtttaattgctgtgtcactttatgaaatttataataattctcaa 641
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gtttcaaataatttaagtttaattgctgtgtcactttatgaaatttataataattctcaa 391


Query: 642 agatatggtgctgtaatttcaagtattcctgcactcattagtagatatactttcgtttat 701
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agatatggtgctgtaatttcaagtattcctgcactcattagtagatatactttcgtttat 451


Query: 702 ctcaatgtagattagatatc 721
           ||||||||||||||||||||
Sbjct: 452 ctcaatgtagattagatatc 471

 Score =  283 bits (143), Expect(2) = 0.0
 Identities = 143/143 (100%)
 Strand = Plus / Plus


Query: 252 aaagcagtagagggtatcattattattcatgatcatggtcatcctcatatattactttta 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   aaagcagtagagggtatcattattattcatgatcatggtcatcctcatatattactttta 61


Query: 312 caagataataattattttaaattaccgggaggtaaacttaaaccaggagaaaatgaaatt 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  caagataataattattttaaattaccgggaggtaaacttaaaccaggagaaaatgaaatt 121


Query: 372 gatggacttataagaaaattaac 394
           |||||||||||||||||||||||
Sbjct: 122 gatggacttataagaaaattaac 144

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 1,112,688,312
Number of extensions: 76755259
Number of successful extensions: 7773883
Number of sequences better than 10.0: 895
Length of query: 773
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 749
Effective length of database: 102,084,959,077
Effective search space: 76461634348673
Effective search space used: 76461634348673
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 8. 1
Homology vs Protein 
Query= Contig-U05201-1 (Contig-U05201-1Q) /CSM_Contig/Contig-U05201-1Q.Seq.d
         (773 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF147558_1(EF147558|pid:none) Populus trichocarpa clone WS0123_H...   190   5e-47
AK118070_1(AK118070|pid:none) Arabidopsis thaliana At4g25550 mRN...   189   1e-46
BT068265_1(BT068265|pid:none) Zea mays full-length cDNA clone ZM...   186   9e-46
AL606641_22(AL606641|pid:none) Oryza sativa genomic DNA, chromos...   184   3e-45
AP008210_2314(AP008210|pid:none) Oryza sativa (japonica cultivar...   184   3e-45
EF081895_1(EF081895|pid:none) Picea sitchensis clone WS02813_J16...   181   2e-44
BT056340_1(BT056340|pid:none) Salmo salar clone ssal-eve-523-200...   178   2e-43
FN357294_40(FN357294|pid:none) Schistosoma mansoni genome sequen...   178   2e-43
FN314864_1(FN314864|pid:none) Schistosoma japonicum isolate Anhu...   178   2e-43
BT080431_1(BT080431|pid:none) Caligus clemensi clone ccle-evs-52...   177   4e-43
BT057879_1(BT057879|pid:none) Salmo salar clone ssal-evf-568-303...   177   4e-43
CU633900_586(CU633900|pid:none) Podospora anserina genomic DNA c...   175   2e-42
AY891817_1(AY891817|pid:none) Synthetic construct Homo sapiens c...   174   3e-42
(Q4KM65) RecName: Full=Cleavage and polyadenylation specificity ...   174   3e-42
(Q6DJE4) RecName: Full=Cleavage and polyadenylation specificity ...   173   6e-42
DQ216100_1(DQ216100|pid:none) Taeniopygia guttata clone 0058P004...   173   6e-42
BC155974_1(BC155974|pid:none) Xenopus tropicalis nudix (nucleosi...   173   6e-42
AK312721_1(AK312721|pid:none) Homo sapiens cDNA, FLJ93125, highl...   172   1e-41
AM392991_1(AM392991|pid:none) Synthetic construct Homo sapiens c...   171   2e-41
BT056811_1(BT056811|pid:none) Salmo salar clone ssal-eve-538-006...   170   5e-41
BT078630_1(BT078630|pid:none) Lepeophtheirus salmonis Pacific fo...   169   1e-40
BT070798_1(BT070798|pid:none) Picea sitchensis clone WS02750_J08...   166   1e-39
AE014296_1747(AE014296|pid:none) Drosophila melanogaster chromos...   165   2e-39
AM270359_8(AM270359|pid:none) Aspergillus niger contig An16c0070...   164   2e-39
AP007155_1137(AP007155|pid:none) Aspergillus oryzae RIB40 genomi...   164   3e-39
DQ216099_1(DQ216099|pid:none) Taeniopygia guttata clone 0058P004...   160   3e-38
DQ443156_1(DQ443156|pid:none) Bombyx mori cleavage and polyadeny...   160   3e-38
AM920436_1460(AM920436|pid:none) Penicillium chrysogenum Wiscons...   160   6e-38
CP000588_379(CP000588|pid:none) Ostreococcus lucimarinus CCE9901...   159   7e-38
AY048229_1(AY048229|pid:none) Arabidopsis thaliana AT4g29820/F27...   150   4e-35
AL161563_32(AL161563|pid:none) Arabidopsis thaliana DNA chromoso...   150   4e-35
AM466138_1(AM466138|pid:none) Vitis vinifera contig VV78X036982....   149   7e-35
BT073675_1(BT073675|pid:none) Oncorhynchus mykiss clone omyk-evo...   147   5e-34
AK012308_1(AK012308|pid:none) Mus musculus 11 days embryo whole ...   124   3e-27
EF086062_1(EF086062|pid:none) Picea sitchensis clone WS02724_F05...   113   8e-24
AY307378_1(AY307378|pid:none) Entamoeba histolytica pre-mRNA cle...   100   4e-20
AM494963_32(AM494963|pid:none) Leishmania braziliensis chromosom...    86   1e-15
CT005265_30(CT005265|pid:none) Leishmania major strain Friedlin,...    84   4e-15
AM502244_29(AM502244|pid:none) Leishmania infantum chromosome 26.      84   4e-15
AM118080_89(AM118080|pid:none) Ustilago hordei mating type regio...    83   9e-15
AC159426_56(AC159426|pid:none) Trypanosoma brucei chromosome 7 c...    83   1e-14
CR940353_567(CR940353|pid:none) Theileria annulata strain Ankara...    78   3e-13
EF147923_1(EF147923|pid:none) Populus trichocarpa clone WS0126_A...    78   4e-13
AL031745_81(AL031745|pid:none) Plasmodium falciparum DNA from MA...    75   2e-12
AM910984_43(AM910984|pid:none) Plasmodium knowlesi strain H chro...    73   1e-11
BX538352_65(BX538352|pid:none) Cryptosporidium parvum chromosome...    69   2e-10
AK342840_1(AK342840|pid:none) Acyrthosiphon pisum ACYPI005495 mR...    63   1e-08
AX886235_1(AX886235|pid:none) Sequence 2098 from Patent EP1033401.     54   4e-06
DQ158858_48(DQ158858|pid:none) Bigelowiella natans nucleomorph c...    47   7e-04
AP006725_2010(AP006725|pid:none) Klebsiella pneumoniae NTUH-K204...    36   1.6
BX640422_196(BX640422|pid:none) Bordetella pertussis strain Toha...    36   1.6
BA000030_3193(BA000030|pid:none) Streptomyces avermitilis MA-468...    36   1.6
AM902716_540(AM902716|pid:none) Bordetella petrii strain DSM 128...    35   2.1
CP000647_1183(CP000647|pid:none) Klebsiella pneumoniae subsp. pn...    35   2.1
CP001281_3485(CP001281|pid:none) Thauera sp. MZ1T, complete geno...    35   2.1
CR378677_150(CR378677|pid:none) Photobacterium profundum SS9 chr...    35   2.7
CP000680_3157(CP000680|pid:none) Pseudomonas mendocina ymp, comp...    35   2.7
CP000450_632(CP000450|pid:none) Nitrosomonas eutropha C91, compl...    35   3.5
BX294136_153(BX294136|pid:none) Rhodopirellula baltica SH 1 comp...    35   3.5
AM420293_976(AM420293|pid:none) Saccharopolyspora erythraea NRRL...    34   4.6
CP000749_1538(CP000749|pid:none) Marinomonas sp. MWYL1, complete...    34   4.6
CP000249_3821(CP000249|pid:none) Frankia sp. CcI3, complete geno...    34   4.6
AP008937_1622(AP008937|pid:none) Lactobacillus fermentum IFO 395...    34   4.6
FJ014966_1(FJ014966|pid:none) Ruegeria sp. 270-3 DNA gyrase B (g...    34   6.0
CP000884_4328(CP000884|pid:none) Delftia acidovorans SPH-1, comp...    33   7.8
CP000512_3616(CP000512|pid:none) Acidovorax citrulli AAC00-1, co...    33   7.8
CP000820_5508(CP000820|pid:none) Frankia sp. EAN1pec, complete g...    33   7.8
DQ399653_11(DQ399653|pid:none) Nonomuraea longicatena K-252a bio...    33   7.8
CP000479_1243(CP000479|pid:none) Mycobacterium avium 104, comple...    33   7.8
CP001071_98(CP001071|pid:none) Akkermansia muciniphila ATCC BAA-...    33   7.8

>EF147558_1(EF147558|pid:none) Populus trichocarpa clone WS0123_H04
           unknown mRNA.
          Length = 202

 Score =  190 bits (482), Expect = 5e-47
 Identities = 99/184 (53%), Positives = 126/184 (68%), Gaps = 2/184 (1%)
 Frame = +3

Query: 150 TSYSFG-KEEKKEKEQSLTSKLARLKDSYEKEGLRKAVEGXXXXXXXXXXXXXXXQDNNY 326
           +SY+FG KE K EK+ S+  +LAR+K +Y KEG+R +VE                Q  N
Sbjct: 15  SSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNT 74

Query: 327 F-KLPGGKLKPGENEIDGLIRKLTKKLSPTGTPVSDAPWEIGDHVSTWWRPNFEPSLFPY 503
           F KLPGG+LKPGENEI+GL RKLT KL    +P     W+IG+ V+TWWRPNFE  ++PY
Sbjct: 75  FCKLPGGRLKPGENEIEGLKRKLTSKLG-ANSPALVPDWQIGECVATWWRPNFETIMYPY 133

Query: 504 IPSHITKPKECKKLFVVTLPEKCKFAVSNNLSLIAVSLYEIYNNSQRYGAVISSIPALIS 683
            P HITKPKECKKL++V L E+  FAV  NL L+AV L+E+Y+N QRYG VIS+IP  +S
Sbjct: 134 CPPHITKPKECKKLYLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLS 193

Query: 684 RYTF 695
           R+ F
Sbjct: 194 RFQF 197

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,063,686,293
Number of extensions: 19919231
Number of successful extensions: 60030
Number of sequences better than 10.0: 70
Number of HSP's gapped: 59887
Number of HSP's successfully gapped: 71
Length of query: 257
Length of database: 1,061,185,681
Length adjustment: 126
Effective length of query: 131
Effective length of database: 649,361,233
Effective search space: 85066321523
Effective search space used: 85066321523
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.81  gvh: 0.47  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: mitochondrial
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U05201-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0