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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05174-1
Contig ID Contig-U05174-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U05174-1 (Contig-U05174-1Q) /CSM_Contig/Contig-U05174-1Q.Seq.d
AAACATTTAAATATATATAAAGATCGAAATGAGCAGAATGAATGATGAAA
CAATGGAGGATAAACCCGATGATTCAAATGGTCCACTCTCAATTTTAATG
GATAGTGTAAATAATAATACTCAAGTTCTTATAAATGTTAGAAATAATAA
AAAACTTTTAGGTAGAGTTAGAGCATTTGATCGTCATTGTAATATGGTTT
TAGAAAATGTAAAAGAAATTTGGACAGAAGTACCAAAAACAGCAAAAGGT
AAAAAGAAAGCAAAACCAATTAACAAAGATCGTTTCATCAGTAAAATGTT
TTTAAGAGGAGATTCAGTAATTTTAGTTTTAAAGAACCCTTTAGGTGCAC
CACCACAAGCAAATTAATAATTTAAATTTAATATGATATTTTTAGATTTT
TTTTTTTTTTTAAAAAAAAAAAAAGAAAAAAAGAAAAAAAGAAAAA
Gap no gap
Contig length 446
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3151391
End point 3150944
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U05174
List of clone(s) 

est1=SSF853E,1,447
Translated Amino Acid sequence 
ni*IYIKIEMSRMNDETMEDKPDDSNGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFD
RHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNPLGAPPQA
N**fkfnmifldfffflkkkkekkkkrk
Translated Amino Acid sequence (All Frames) 
Frame A:
khlniykdrneqne**nngg*tr*fkwstlnfng*ck**ysssykc*k**ktfr*s*si*
ssl*ygfrkckrnldrstknskr*kesktn*qrsfhq*nvfkrrfsnfsfkepfrcttts
klii*i*ydifrfffffkkkkrkkekkk


Frame B:
ni*IYIKIEMSRMNDETMEDKPDDSNGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFD
RHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNPLGAPPQA
N**fkfnmifldfffflkkkkekkkkrk


Frame C:
tfkyi*rsk*ae*mmkqwrinpmiqmvhsqf*wiv*iiilkfl*mleiiknf*velehli
viviwf*km*kkfgqkyqkqqkvkrkqnqltkivssvkcf*eeiq*f*f*rtl*vhhhkq
innlnli*yf*iffff*kkkkkkrkkek
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05174-1 (Contig-U05174-1Q)
/CSM_Contig/Contig-U05174-1Q.Seq.d
         (446 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05174-1 (Contig-U05174-1Q) /CSM_Contig/Conti...   460  e-130
Contig-U12149-1 (Contig-U12149-1Q) /CSM_Contig/Conti...    42  5e-04
Contig-U03557-1 (Contig-U03557-1Q) /CSM_Contig/Conti...    38  0.008
Contig-U10026-1 (Contig-U10026-1Q) /CSM_Contig/Conti...    36  0.031
Contig-U03115-1 (Contig-U03115-1Q) /CSM_Contig/Conti...    36  0.031
Contig-U00906-1 (Contig-U00906-1Q) /CSM_Contig/Conti...    36  0.031
Contig-U14523-1 (Contig-U14523-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U14358-1 (Contig-U14358-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U14271-1 (Contig-U14271-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U01824-1 (Contig-U01824-1Q) /CSM_Contig/Conti...    32  0.48

>Contig-U05174-1 (Contig-U05174-1Q) /CSM_Contig/Contig-U05174-1Q.Seq.d
          Length = 446

 Score =  460 bits (232), Expect = e-130
 Identities = 232/232 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacatttaaatatatataaagatcgaaatgagcagaatgaatgatgaaacaatggagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaacatttaaatatatataaagatcgaaatgagcagaatgaatgatgaaacaatggagga 60

                                                                       
Query: 61  taaacccgatgattcaaatggtccactctcaattttaatggatagtgtaaataataatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taaacccgatgattcaaatggtccactctcaattttaatggatagtgtaaataataatac 120

                                                                       
Query: 121 tcaagttcttataaatgttagaaataataaaaaacttttaggtagagttagagcatttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaagttcttataaatgttagaaataataaaaaacttttaggtagagttagagcatttga 180

                                                               
Query: 181 tcgtcattgtaatatggttttagaaaatgtaaaagaaatttggacagaagta 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcgtcattgtaatatggttttagaaaatgtaaaagaaatttggacagaagta 232


 Score =  260 bits (131), Expect = 1e-69
 Identities = 131/131 (100%)
 Strand = Plus / Plus

                                                                       
Query: 266 ccaattaacaaagatcgtttcatcagtaaaatgtttttaagaggagattcagtaatttta 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ccaattaacaaagatcgtttcatcagtaaaatgtttttaagaggagattcagtaatttta 325

                                                                       
Query: 326 gttttaaagaaccctttaggtgcaccaccacaagcaaattaataatttaaatttaatatg 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gttttaaagaaccctttaggtgcaccaccacaagcaaattaataatttaaatttaatatg 385

                      
Query: 386 atatttttaga 396
           |||||||||||
Sbjct: 386 atatttttaga 396


>Contig-U12149-1 (Contig-U12149-1Q) /CSM_Contig/Contig-U12149-1Q.Seq.d
          Length = 2002

 Score = 42.1 bits (21), Expect = 5e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 362  aattaataatttaaatttaat 382
            |||||||||||||||||||||
Sbjct: 1869 aattaataatttaaatttaat 1849


>Contig-U03557-1 (Contig-U03557-1Q) /CSM_Contig/Contig-U03557-1Q.Seq.d
          Length = 593

 Score = 38.2 bits (19), Expect = 0.008
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 365 taataatttaaatttaata 383
           |||||||||||||||||||
Sbjct: 446 taataatttaaatttaata 428


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,236
Number of Sequences: 6905
Number of extensions: 12236
Number of successful extensions: 1476
Number of sequences better than 10.0: 427
length of query: 446
length of database: 5,674,871
effective HSP length: 16
effective length of query: 430
effective length of database: 5,564,391
effective search space: 2392688130
effective search space used: 2392688130
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7.12
Homology vs DNA 
Query= Contig-U05174-1 (Contig-U05174-1Q) /CSM_Contig/Contig-U05174-1Q.Seq.d
         (446 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C84797) Dictyostelium discoideum slug cDNA, clone SSF853.        398   e-177  2
(DN303309) PL05002B2B02 cDNA from sexually mature hermaphodi...    86   1e-12  1
(DN291335) PL030006B20G11 cDNA from sexually mature hermapho...    86   1e-12  1
(DN291080) PL030005B20H11 cDNA from sexually mature hermapho...    86   1e-12  1
(BH162829) ENTRV93TF Entamoeba histolytica Sheared DNA Entam...    50   2e-12  3
(AZ546815) ENTCY49TR Entamoeba histolytica Sheared DNA Entam...    50   2e-12  3
(AZ671714) ENTKZ09TF Entamoeba histolytica Sheared DNA Entam...    50   2e-12  3
(BH130753) ENTOM60TF Entamoeba histolytica Sheared DNA Entam...    50   2e-12  3
(BQ135050) INIT1_2_F03.g1_A006 G5 trophont cDNA (INIT1) Icht...    64   3e-11  2
(BQ134980) INIT1_2_F03.b1_A006 G5 trophont cDNA (INIT1) Icht...    64   3e-11  2
(DB768960) Apis mellifera head cDNA, RIKEN full-length enric...    62   2e-09  2
(DB740141) Apis mellifera head cDNA, RIKEN full-length enric...    62   2e-09  2
(AZ676878) ENTMS06TF Entamoeba histolytica Sheared DNA Entam...    50   2e-08  3
(AM642786) Entamoeba dispar GSS, clone dispar98h05.p1k.            66   1e-06  1
(AM643923) Entamoeba moshkovskii FIC GSS, clone mosh004b03.q1k.    48   8e-06  2
(CT801223) Paramecium tetraurelia 5-PRIME EST from clone LK0...    52   2e-05  2
(EX273391) 1453750_5_A04_016 PY06 Carica papaya cDNA, mRNA s...    54   5e-05  2
(EX293420) 1581665_5_N23_084 PY06 Carica papaya cDNA, mRNA s...    54   5e-05  2
(FF321067) 280408701 Pea aphid whole body normalized full le...    44   1e-04  2
(FF311200) 279381381 Pea aphid whole body normalized full le...    44   1e-04  2
(FF309266) 279376040 Pea aphid whole body normalized full le...    44   1e-04  2
(FF324709) 280424074 Pea aphid whole body normalized full le...    44   1e-04  2
(FF323136) 280418206 Pea aphid whole body normalized full le...    44   1e-04  2
(FF334960) 280457819 Pea aphid whole body normalized full le...    44   1e-04  2
(FF319399) 280403037 Pea aphid whole body normalized full le...    44   1e-04  2
(EX625853) 255434059 Pea aphid whole body normalized full le...    44   1e-04  2
(EX629867) 255463996 Pea aphid whole body normalized full le...    44   1e-04  2
(FF333193) 280452539 Pea aphid whole body normalized full le...    44   1e-04  2
(EX628705) 255450939 Pea aphid whole body normalized full le...    44   1e-04  2
(FC440324) CBAX13343.rev CBAX Physcomitrella patens subsp. p...    44   1e-04  2
(FF321821) 280413129 Pea aphid whole body normalized full le...    44   2e-04  2
(EX257108) 1437303_5_C21_093 PY06 Carica papaya cDNA, mRNA s...    54   2e-04  2
(DC887603) Citrus sinensis mRNA, clone: EIC0618, 5'-end sequ...    44   4e-04  2
(DC896280) Citrus unshiu mRNA, clone: PCC0911, 5'-end sequen...    44   5e-04  2
(CK934274) CGF1004261_B04 Developing fruit peel at 38 DAFB C...    44   5e-04  2
(DN959351) USDA-FP/ARO_15181 Star Ruby grapefruit hot water-...    44   6e-04  2
(AM660939) Entamoeba moshkovskii FIC GSS, clone mosh104b05.p1k.    48   6e-04  2
(AY750865) Toxoptera citricida putative small nuclear ribonu...    48   0.001  2
(DW693819) EST017300 Trichophyton rubrum cDNA library 3 Tric...    48   0.002  2
(DW679287) EST002768 Trichophyton rubrum cDNA library 0 Tric...    48   0.002  2
(FL663704) Embrapa_Musa_ABB_Stressed_Cachaco_E924TF Embrapa_...    42   0.004  2
(BH153353) ENTSU04TF Entamoeba histolytica Sheared DNA Entam...    40   0.004  2
(DB934969) Manihot esculenta mRNA, clone: CAS01_042_C19, 5'end.    54   0.005  1
(DB742048) Apis mellifera head cDNA, RIKEN full-length enric...    54   0.005  1
(AM766333) Zostera marina EST, 5'-end sequence, meristematic...    54   0.005  1
(CK647627) c.03.D6.5 CM523-7 cassava lambda zap Manihot escu...    54   0.005  1
(CK645587) si.07.B06.5 MCol1522 cassava lambda zap Manihot e...    54   0.005  1
(CD271915) T139A00264 (FHIG:A) Ectomycorrhiza plate culture ...    54   0.005  1
(EW972080) DW1F00460 DW1F (Rhizomorphs - microcosm) Paxillus...    54   0.005  1
(ES500204) BIG_AF_8020 Brine Shrimp diapaused embryos (cysts...    54   0.005  1
(FL659208) Embrapa_Musa_ABB_NonStressed_Cachaco_O910TF Embra...    42   0.006  2
(FL665229) Embrapa_Musa_ABB_Stressed_Cachaco_ES06TF Embrapa_...    42   0.006  2
(FL666625) Embrapa_Musa_ABB_Stressed_Cachaco_F776TF Embrapa_...    42   0.007  2
(FF557477) MUSL140TF MUSL Musa acuminata cDNA 5', mRNA seque...    42   0.007  2
(AZ676636) ENTFW62TR Entamoeba histolytica Sheared DNA Entam...    40   0.016  2
(AZ931142) 474.dhz62e12.s1 Saccharomyces unisporus NRRL Y-15...    52   0.019  1
(CV012758) Dl_sw_15A04_TEXF1 Diplosoma listerianum mixed adu...    52   0.019  1
(BU798079) SJF2AAA09 SJF Schistosoma japonicum cDNA similar ...    52   0.019  1
(BU780672) SJEFZG12 SJE Schistosoma japonicum cDNA similar t...    52   0.019  1
(BU778002) SJEDQD03 SJE Schistosoma japonicum cDNA similar t...    52   0.019  1
(BU777861) SJEDOG06 SJE Schistosoma japonicum cDNA similar t...    52   0.019  1
(BU777675) SJEDMG10 SJE Schistosoma japonicum cDNA similar t...    52   0.019  1
(BU776150) SJEBUE11 SJE Schistosoma japonicum cDNA similar t...    52   0.019  1
(BU772777) SJEFDG04 SJE Schistosoma japonicum cDNA similar t...    52   0.019  1
(BU769373) SJECEC12 SJE Schistosoma japonicum cDNA similar t...    52   0.019  1
(BU767965) SJEBEG08 SJE Schistosoma japonicum cDNA similar t...    52   0.019  1
(BU766706) SJEAJA05 SJE Schistosoma japonicum cDNA similar t...    52   0.019  1
(BU724152) SJMBEA11 SJM Schistosoma japonicum cDNA similar t...    52   0.019  1
(BU717596) SJM2BPB08 SJM Schistosoma japonicum cDNA similar ...    52   0.019  1
(BU717149) SJM2BAC07 SJM Schistosoma japonicum cDNA similar ...    52   0.019  1
(BU717124) SJM2BAA06 SJM Schistosoma japonicum cDNA similar ...    52   0.019  1
(BU716832) SJM2AXF03 SJM Schistosoma japonicum cDNA similar ...    52   0.019  1
(BU716822) SJM2AXE05 SJM Schistosoma japonicum cDNA similar ...    52   0.019  1
(BU716807) SJM2AXD02 SJM Schistosoma japonicum cDNA similar ...    52   0.019  1
(BU716738) SJM2AWF04 SJM Schistosoma japonicum cDNA similar ...    52   0.019  1
(BU716716) SJM2AWD06 SJM Schistosoma japonicum cDNA similar ...    52   0.019  1
(BU716706) SJM2AWC08 SJM Schistosoma japonicum cDNA similar ...    52   0.019  1
(BU716617) SJM2AVD02 SJM Schistosoma japonicum cDNA similar ...    52   0.019  1
(BU716581) SJM2AVA02 SJM Schistosoma japonicum cDNA similar ...    52   0.019  1
(BU716580) SJM2AVA01 SJM Schistosoma japonicum cDNA similar ...    52   0.019  1
(BU716541) SJM2AUE09 SJM Schistosoma japonicum cDNA similar ...    52   0.019  1
(BU716412) SJM2ATB11 SJM Schistosoma japonicum cDNA similar ...    52   0.019  1
(BU716371) SJM2ASG05 SJM Schistosoma japonicum cDNA similar ...    52   0.019  1
(BU716360) SJM2ASF06 SJM Schistosoma japonicum cDNA similar ...    52   0.019  1
(BU714417) SJAABEG11 Adult SjC 7/94 Schistosoma japonicum cD...    52   0.019  1
(BJ956607) Physcomitrella patens subsp. patens cDNA clone:pp...    52   0.019  1
(BJ951294) Physcomitrella patens subsp. patens cDNA clone:pp...    52   0.019  1
(BJ945819) Physcomitrella patens subsp. patens cDNA clone:pp...    52   0.019  1
(BJ940740) Physcomitrella patens subsp. patens cDNA clone:pp...    52   0.019  1
(BJ580133) Physcomitrella patens subsp. patens cDNA clone:pp...    52   0.019  1
(BJ174958) Physcomitrella patens subsp. patens cDNA clone:pp...    52   0.019  1
(FL656789) 1225seq2795; Schistosoma japonicum 7d schistosomu...    52   0.019  1
(FL656788) 1225seq3941; Schistosoma japonicum 7d schistosomu...    52   0.019  1
(FC399812) CAYZ23385.fwd CAYZ Physcomitrella patens subsp. p...    52   0.019  1
(FC399811) CAYZ23385.rev CAYZ Physcomitrella patens subsp. p...    52   0.019  1
(AW126683) ga14b04.y1 Moss EST library PPU Physcomitrella pa...    52   0.019  1
(CN766754) Tp_0508 Tyrophagus putrescentiae cDNA library Tyr...    40   0.022  2
(AY942852) Meloidogyne arabicida cytochrome oxidase subunit ...    36   0.024  4
(BE344335) EST344201 potato stolon, Cornell University Solan...    42   0.058  2
(AM431847) Vitis vinifera contig VV78X026477.7, whole genome...    50   0.074  1
(CO224455) WS01021.B21_N09 SS-R-N-A-11 Picea sitchensis cDNA...    50   0.074  1
(CK995296) 046C07R1.3A ESTHcyl Hebeloma cylindrosporum cDNA ...    50   0.074  1
(GE565690) CCHT23503.b1_M19.ab1 CCHT Niger Seed Guizotia aby...    50   0.074  1
(ES587805) Hm_pwAE2_45F01_M13rev Amplicon Express mixed pupa...    50   0.074  1
(BG096013) EST460532 potato leaves and petioles Solanum tube...    42   0.077  2
(FE420035) CBTX1584.rev CBTX_Daphnia_pulex_Chosen_One_Librar...    42   0.081  2
(EB685012) CP-20_D04_031.f1 Citrus paradisi young grapefruit...    36   0.083  2
(BG600705) EST505588 cSTS Solanum tuberosum cDNA clone cSTS2...    42   0.084  2
(DC901435) Citrus unshiu mRNA, clone: YJS1881, 5'-end sequen...    36   0.087  2
(ET085559) QM0AAC8BE03FM1 CCH3 Citrus clementina genomic clo...    36   0.088  2
(BG889284) EST515135 cSTD Solanum tuberosum cDNA clone cSTD1...    42   0.089  2
(BG597446) EST496124 cSTS Solanum tuberosum cDNA clone cSTS1...    42   0.089  2
(AC093902) Homo sapiens BAC clone RP11-732B24 from 4, comple...    46   0.090  2
(BG887836) EST513687 cSTD Solanum tuberosum cDNA clone cSTD7...    42   0.090  2
(DC896717) Citrus unshiu mRNA, clone: RGP0668, 5'-end sequen...    36   0.092  2
(BM407512) EST581839 potato roots Solanum tuberosum cDNA clo...    42   0.092  2
(DN623655) UCRCA01_03N17_f Bark of Madame Vinous Sweet Orang...    36   0.092  2
(FC920106) C08039C01SK PhyRootCl1 Citrus reshni cDNA clone C...    36   0.094  2
(BI920525) EST540460 potato microtubers, in vitro-grown Sola...    42   0.094  2
(DC898920) Citrus unshiu mRNA, clone: STG1559, 5'-end sequen...    36   0.095  2
(BI179253) EST520198 cSTE Solanum tuberosum cDNA clone cSTE1...    42   0.095  2
(DN984005) 2SV617F02_SOL05A_015 SV6 Solanum chacoense cDNA, ...    42   0.096  2
(CK719792) 20089 Swollen Stolon Solanum tuberosum cDNA, mRNA...    42   0.097  2
(EY843567) CA26-C1-002-016-D07-CT.F Sour orange leaf, field ...    36   0.099  2
(BQ624226) USDA-FP_01317 Ridge pineapple sweet orange entire...    36   0.100  2
(CK860922) 31947 In vitro Root Solanum tuberosum cDNA, mRNA ...    42   0.100  2
(EY844154) CA26-C1-002-018-C11-CT.F Sour orange leaf, field ...    36   0.100  2
(CV504325) 70856.1 Mixed Floral Solanum tuberosum cDNA clone...    42   0.10   2
(CF836054) UCRCS03_02F13_f Washington Navel Orange Shoot Mer...    36   0.11   2
(FC921445) C32105A10EF RVDevelopN Citrus clementina cDNA clo...    36   0.11   2
(CF836055) UCRCS03_02F13_r Washington Navel Orange Shoot Mer...    36   0.11   2
(AL844509) Plasmodium falciparum 3D7 chromosome 13.                36   0.11   6
(DC886757) Citrus nobilis x Citrus kinokuni mRNA, clone: EGJ...    36   0.11   2
(FC876167) C32001B02EF DevOvary1 Citrus clementina cDNA clon...    36   0.11   2
(CF831286) UCRCR01_06B04_r Clementine Mandarin Albedo at Rin...    36   0.12   2
(EY660495) CS00-C1-101-022-G12-CT.F Sweet orange leaf, infec...    36   0.12   2
(CX543625) UCRPT01_5_008_A12_T3 Poncirus trifoliata CTV-chal...    36   0.12   2
(EY660635) CS00-C1-101-024-C12-CT.F Sweet orange leaf, infec...    36   0.12   2
(EY817707) PT11-C1-900-089-D05-CT.F Poncirus trifoliata leaf...    36   0.12   2
(FC870481) KN0AAA3CC02ZM1 AbsAOv1 Citrus clementina cDNA clo...    36   0.12   2
(EY816691) PT11-C1-900-074-C11-CT.F Poncirus trifoliata leaf...    36   0.13   2
(EY779317) CR05-C1-103-057-B02-CT.F Mandarin leaf, infected ...    36   0.13   2
(DN980393) SV6_25E04_096 SV6 Solanum chacoense cDNA, mRNA se...    42   0.13   2
(DY257013) KN0AAA3CC02ZM1 AbsAOv1 Citrus clementina cDNA 5',...    36   0.13   2
(EY843209) CA26-C1-002-010-B05-CT.F Sour orange leaf, field ...    36   0.13   2
(EY777944) CR05-C1-103-040-A05-CT.F Mandarin leaf, infected ...    36   0.14   2
(EY881890) LT33-C1-003-066-B11-CT.F Tahiti lime leaf, greenh...    36   0.14   2
(EY752523) CS00-C5-003-067-F10-CT.F Sweet orange flower, gre...    36   0.15   2
(AB072435) Apis cerana indica mitochondrial co2 gene for cyt...    40   0.18   2
(EY665432) CS00-C1-101-007-H06-CT.F Sweet orange leaf, infec...    36   0.20   2
(EY665412) CS00-C1-101-007-F06-CT.F Sweet orange leaf, infec...    36   0.20   2
(AE014188) Plasmodium falciparum 3D7 chromosome 12, complete...    38   0.22   9
(BG226287) kq19g05.y1 TBN95TM-SSR Strongyloides stercoralis ...    38   0.23   2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    34   0.24   7
(EL691561) OPR01596 Elaeis guineensis root Elaeis guineensis...    44   0.28   2
(DX520992) GH_MBb0050H23r GH_MBb Gossypium hirsutum genomic ...    48   0.29   1
(DB952004) Manihot esculenta mRNA, clone: CAS01_042_C19, 3'end.    48   0.29   1
(GD243156) HLUPJN1_UP_005_D02_05DEC2003_001 HLUPJN1 Humulus ...    48   0.29   1
(CP001240) Borrelia afzelii ACA-1 plasmid cp32-4, complete s...    48   0.29   1
(BA000023) Sulfolobus tokodaii str. 7 DNA, complete genome.        48   0.29   1
(ES370710) EoEST2521 Oil palm mesocarp-tissue cDNA Entry Lib...    44   0.32   2
(AC004157) Plasmodium falciparum chromosome 12 clone PFYAC29...    38   0.34   5
(EL686724) OPVM00330 Elaeis guineensis shoot apex Elaeis gui...    44   0.34   2
(CF450197) EST686542 normalized cDNA library of onion Allium...    36   0.36   2
(EL690872) OPR00904 Elaeis guineensis root Elaeis guineensis...    44   0.36   2
(EI498645) PV_GBa0117L06.r PV_GBa Phaseolus vulgaris genomic...    42   0.47   2
(AC225307) Heliconius erato clone BBAM-35E13, WORKING DRAFT ...    44   0.58   4
(AL157735) Arabidopsis thaliana DNA chromosome 3, BAC clone ...    46   0.59   2
(FI267905) CccaBb057-I9JR CccABb Cajanus cajan genomic clone...    34   0.59   3
(AX346353) Sequence 1424 from Patent WO0200928.                    38   0.62   2
(AM444604) Vitis vinifera contig VV78X160441.9, whole genome...    38   0.67   4
(EU277023) Apis cerana haplotype CH-16 COI-COII intergenic s...    40   0.72   2
(EU277022) Apis cerana haplotype CH-15 COI-COII intergenic s...    40   0.72   2
(EU277019) Apis cerana haplotype CH-12 COI-COII intergenic s...    40   0.72   2
(EU277018) Apis cerana haplotype CH-10 COI-COII intergenic s...    40   0.72   2
(EU277017) Apis cerana haplotype CH-9 COI-COII intergenic sp...    40   0.72   2
(DQ917683) Apis cerana haplotype CH-8 COI-COII intergenic sp...    40   0.72   2
(DQ917682) Apis cerana haplotype CH-7 COI-COII intergenic sp...    40   0.72   2
(DQ917680) Apis cerana haplotype CH-5 COI-COII intergenic sp...    40   0.72   2
(DQ917678) Apis cerana haplotype CH-3 COI-COII intergenic sp...    40   0.72   2
(DQ917677) Apis cerana haplotype CH-2 COI-COII intergenic sp...    40   0.72   2
(DQ269028) Apis cerana haplotype China5 cytochrome c oxidase...    40   0.72   2
(CF357413) rm85a03.y1 Meloidogyne arenaria J2 SMART pGEM Mel...    38   0.72   2
(DQ917679) Apis cerana haplotype CH-4 COI-COII intergenic sp...    40   0.73   2
(DQ269026) Apis cerana haplotype China3 cytochrome c oxidase...    40   0.73   2
(EC164337) MNE00001734 Monosiga ovata Non-normalized Monosig...    36   0.94   2
(CQ655069) Sequence 12026 from Patent WO0234771.                   40   1.1    4
(AX954529) Sequence 1375 from Patent WO03093306.                   40   1.1    4
(AY942849) Meloidogyne morocciensis cytochrome oxidase subun...    28   1.1    4
(AY635610) Meloidogyne arenaria cytochrome oxidase subunit I...    28   1.1    4
(EU364879) Meloidogyne arenaria cytochrome oxidase subunit I...    28   1.1    4
(EU364883) Meloidogyne thailandica cytochrome oxidase subuni...    28   1.1    4
(AL766847) Streptococcus agalactiae NEM316 complete genome, ...    40   1.1    2
(AC189510) Brassica rapa subsp. pekinensis clone KBrB089D07,...    46   1.2    1
(AR549858) Sequence 4989 from patent US 6747137.                   46   1.2    1
(BC040573) Homo sapiens cDNA clone IMAGE:5267587.                  46   1.2    1
(AC093831) Homo sapiens BAC clone RP11-401I19 from 4, comple...    46   1.2    1
(AC230894) Bos taurus clone CH240-496I15, WORKING DRAFT SEQU...    46   1.2    1
(AC226829) Medicago truncatula chromosome 7 clone mth2-35L17...    46   1.2    1
(AC173291) Medicago truncatula chromosome 7 clone mth2-63m2,...    46   1.2    1
(CU188577) Equus caballus GSS, BAC clone CH241-357C18, T7 en...    46   1.2    1
(CL601820) OB__Ba0071L22.r OB__Ba Oryza brachyantha genomic ...    46   1.2    1
(CL538785) OB__Ba0049G16.f OB__Ba Oryza brachyantha genomic ...    46   1.2    1
(EC607902) Y08C12 YLX600 Hevea brasiliensis cDNA clone Y08C1...    46   1.2    1
(AM790845) Nicotiana tabacum EST, clone nt002143030.               46   1.2    1
(CA756409) BR030041000_PLATE_G11_87_087.ab1 OA Oryza sativa ...    46   1.2    1
(BU717218) SJM2BAG12 SJM Schistosoma japonicum cDNA similar ...    46   1.2    1
(BU717127) SJM2BAA09 SJM Schistosoma japonicum cDNA similar ...    46   1.2    1
(DT456319) GH_ON14D02.f GH_ON Gossypium hirsutum cDNA clone ...    38   1.2    2
(FL659106) Embrapa_Musa_ABB_NonStressed_Cachaco_O656TF Embra...    34   1.2    2
(FL649265) Embrapa_Mbalbisiana_PKW_Root_006_e02_b Embrapa_Mu...    34   1.3    2
(FD654889) MF1_138_A09.b1_F001 Limnanthes alba EST Library M...    40   1.3    2
(FL665478) Embrapa_Musa_ABB_Stressed_Cachaco_EU83TF Embrapa_...    34   1.4    2
(AC112117) Rattus norvegicus clone CH230-163M8, *** SEQUENCI...    40   1.4    4
(AC027493) Homo sapiens chromosome 3 clone RP11-585F20 map 3...    40   1.4    5
(FL658680) Embrapa_Musa_ABB_NonStressed_Cachaco_NW89TF Embra...    34   1.5    2
(AC131335) Mus musculus chromosome 8, clone RP23-32D9, compl...    36   1.5    5
(AF292562) Strongyloides stercoralis G protein alpha subunit...    40   1.6    2
(CP001418) Borrelia burgdorferi 64b plasmid 64b_cp32-3-8, co...    40   1.7    2
(EJ539461) 1092955353553 Global-Ocean-Sampling_GS-29-01-01-1...    36   1.7    2
(AM458340) Vitis vinifera contig VV78X220003.4, whole genome...    34   1.8    4
(AC189468) Brassica rapa subsp. pekinensis clone KBrB078A03,...    44   1.8    2
(CJ490403) Macaca fascicularis mRNA, clone: QtsA-18192, 5' e...    42   1.9    2
(AL844506) Plasmodium falciparum 3D7 chromosome 7.                 34   2.0    2
(EY198125) BC_012_46 Cotton ovule and fiber 3-5 days post an...    38   2.2    2
(CT827849) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   2.3    4
(AC212929) Populus trichocarpa clone POP068-E20, complete se...    32   2.4    2
(BX927356) Zebrafish DNA sequence from clone DKEY-54K20 in l...    32   2.4    7
(CU928192) S.lycopersicum DNA sequence from clone LE_HBa-142A5.    38   2.4    4
(AY635611) Meloidogyne incognita cytochrome oxidase subunit ...    28   2.4    4
(AY942853) Meloidogyne sp. 35 cytochrome oxidase subunit II ...    28   2.5    4
(CW938040) TcB17.3_H11_SP6 Tribolium BAC library Tribolium c...    36   2.8    3
(AY942857) Meloidogyne sp. 40 cytochrome oxidase subunit II ...    28   3.0    4
(EU436655) Vitis riparia genotype PI588259 phytochrome C (PH...    36   3.0    2
(EU436651) Vitis vinifera genotype PN40024 phytochrome C (PH...    36   3.0    2
(EF183527) Meloidogyne sp. HSC cytochrome oxidase subunit II...    28   3.0    4
(AY942856) Meloidogyne sp. 38 cytochrome oxidase subunit II ...    28   3.0    4
(AY942848) Meloidogyne ethiopica cytochrome oxidase subunit ...    28   3.0    4
(AY635612) Meloidogyne javanica cytochrome oxidase subunit I...    28   3.0    4
(AY942858) Meloidogyne sp. 50 cytochrome oxidase subunit II ...    28   3.0    4
(EI292359) GM_WBc0014I22.r GM_WBc Glycine max genomic clone ...    32   3.1    2
(EI292001) GM_WBc0014A20.r GM_WBc Glycine max genomic clone ...    32   3.1    2
(FI005565) CHO_OF6897xl24f1.ab1 CHO_OF6 Nicotiana tabacum ge...    34   3.1    2
(AY942855) Meloidogyne sp. MS3 cytochrome oxidase subunit II...    28   3.1    4
(AY942854) Meloidogyne sp. MS1 cytochrome oxidase subunit II...    28   3.1    4
(CA856608) PfESToac11b07.y1 Plasmodium falciparum 3D7 gameto...    34   3.1    2
(BM276111) PfESToaa70d10.y1 Plasmodium falciparum 3D7 gameto...    34   3.1    2
(AC007170) Arabidopsis thaliana chromosome 2 clone T3P4 map ...    36   3.2    4
(FJ494922) Apis cerana cerana haplotype CB1 cytochrome oxida...    40   3.4    2
(DQ381965) Apis cerana haplotype H3 tRNA-Leu gene, partial s...    40   3.5    2
(DQ388608) Apis cerana voucher 1001 tRNA-Leu gene, partial s...    40   3.8    2
(DQ388607) Apis cerana voucher 0701 tRNA-Leu gene, partial s...    40   3.8    2
(DQ388606) Apis cerana voucher 0905 tRNA-Leu gene, partial s...    40   3.8    2
(DQ388605) Apis cerana voucher 0801 tRNA-Leu gene, partial s...    40   3.8    2
(DQ388604) Apis cerana voucher 1003 tRNA-Leu gene, partial s...    40   3.8    2
(DQ388603) Apis cerana voucher 0302 tRNA-Leu gene, partial s...    40   3.8    2
(DQ388602) Apis cerana voucher 0401 tRNA-Leu gene, partial s...    40   3.8    2
(DQ385854) Apis cerana voucher 0103 (SNDK) tRNA-Leu gene, pa...    40   3.8    2
(CR925728) Zebrafish DNA sequence from clone DKEY-96G2 in li...    40   3.8    2
(CS374450) Sequence 553 from Patent WO2006034879.                  34   3.9    3
(CS374448) Sequence 551 from Patent WO2006034879.                  34   3.9    3
(FI307073) AdH1166-CPY2-I10TF AdH1 Arachis duranensis genomi...    34   4.2    2
(CT790034) Paramecium tetraurelia 5-PRIME EST from clone LK0...    38   4.2    2
(CV190850) vco01-3ms1-a01 Vco01 Vaccinium corymbosum cDNA cl...    34   4.3    2
(CR391925) Zebrafish DNA sequence from clone DKEY-62A13 in l...    44   4.6    1
(BX663525) Zebrafish DNA sequence from clone DKEY-97A13 in l...    44   4.6    1
(EU284828) TSA: Elaeis guineensis EgEfMPOB00013 small nuclea...    44   4.6    1
(BX004793) Mouse DNA sequence from clone RP23-188D9 on chrom...    44   4.6    1
(AC154774) Mus musculus BAC clone RP24-455C12 from chromosom...    44   4.6    1
(AC154254) Mus musculus BAC clone RP24-201L14 from chromosom...    44   4.6    1
(AC151572) Mus musculus BAC clone RP23-388I22 from 1, comple...    44   4.6    1
(AC019153) Mus musculus chromosome 2 clone RP23-286D16, comp...    44   4.6    1
(CR380952) Candida glabrata strain CBS138 chromosome F compl...    44   4.6    1
(AM431788) Vitis vinifera contig VV78X105687.8, whole genome...    44   4.6    1
(AC235190) Glycine max strain Williams 82 clone GM_WBb0011N2...    44   4.6    1
(AC129724) Rattus norvegicus clone CH230-286M4, *** SEQUENCI...    44   4.6    1
(AC118788) Rattus norvegicus clone CH230-412J8, WORKING DRAF...    44   4.6    1
(AC111760) Rattus norvegicus clone CH230-236H21, WORKING DRA...    44   4.6    1
(AC109097) Rattus norvegicus clone CH230-223G15, *** SEQUENC...    44   4.6    1
(AC097843) Rattus norvegicus clone CH230-186M8, *** SEQUENCI...    44   4.6    1
(CU466429) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.6    1
(AC234590) Solanum tuberosum chromosome 1 clone RH097M23, **...    44   4.6    1
(AC232809) Heliconius erato clone BBAM-31N9, *** SEQUENCING ...    44   4.6    1
(AC222719) Bos taurus clone CH240-441G13, WORKING DRAFT SEQU...    44   4.6    1
(AC189252) Brassica rapa subsp. pekinensis clone KBrB019M05,...    44   4.6    1
(AC173418) Bos taurus clone CH240-281B10, WORKING DRAFT SEQU...    44   4.6    1
(AC170506) Bos taurus clone CH240-243D7, WORKING DRAFT SEQUE...    44   4.6    1
(EK341011) 1095467061053 Global-Ocean-Sampling_GS-31-01-01-1...    44   4.6    1
(EK127168) 1092990300485 Global-Ocean-Sampling_GS-31-01-01-1...    44   4.6    1
(EJ377616) 1092963749168 Global-Ocean-Sampling_GS-28-01-01-1...    44   4.6    1
(EJ190546) 1092344192625 Global-Ocean-Sampling_GS-27-01-01-1...    44   4.6    1
(DU943555) 374110 Tomato EcoRI BAC Library Solanum lycopersi...    44   4.6    1
(AL404434) T3 end of clone AT0AA016C11 of library AT0AA from...    44   4.6    1
(AL404097) T7 end of clone AT0AA013B05 of library AT0AA from...    44   4.6    1
(BZ100177) CH230-236H21.TJ CHORI-230 Segment 1 Rattus norveg...    44   4.6    1
(AG472145) Mus musculus molossinus DNA, clone:MSMg01-363M16....    44   4.6    1
(EL682874) OPYF02033 Elaeis guineensis young flower 4-6 cm E...    44   4.6    1
(EE663197) LP-N-N01-0963-LF Lymphoid organ-normalized Penaeu...    44   4.6    1
(EC745029) PSE00005617 rw_mgpallid Polysphondylium pallidum ...    44   4.6    1
(DW677929) HC-H-S01-0436-LF heat-induced haemocyte cDNA libr...    44   4.6    1
(DN302860) PL05001B1C08 cDNA from sexually mature hermaphodi...    44   4.6    1
(CN630126) taf35g04.x1 Hydra EST Darmstadt I Hydra magnipapi...    44   4.6    1
(BF402587) UI-R-CA0-bhm-b-10-0-UI.s1 UI-R-CA0 Rattus norvegi...    44   4.6    1
(GR039099) CCIC9666.g1 CCIC Mimulus guttatus IM62 roots (H) ...    44   4.6    1
(FE172896) LV_NC_RA05C19f Litopenaeus vannamei nerve cord cD...    44   4.6    1
(FE086819) LV_GL_RA32C06f Litopenaeus vannamei gills cDNA li...    44   4.6    1
(FE086818) LV_GL_RA32A06r Litopenaeus vannamei gills cDNA li...    44   4.6    1
(FD664067) EST1138 Shrimp Testis SSH Reverse Library Penaeus...    44   4.6    1
(EY407440) pOP-EAP01865_EST_C_1_pBSK_SK EA (Oil Palm Embryoi...    44   4.6    1
(EY396582) pOP-CBP00122_EST_C_1_pBSK_SK CB (Oil Palm Non-Emb...    44   4.6    1
(EX209402) SGT17n2_D07 library_17: tammar wallaby mammary ti...    44   4.6    1
(AV815743) Arabidopsis thaliana cDNA clone:RAFL09-87-M15, 3'...    44   4.6    1
(FL667448) Embrapa_Musa_ABB_Stressed_Cachaco_FH73TF Embrapa_...    34   4.7    2
(AC224075) Bos taurus clone CH240-451A14, WORKING DRAFT SEQU...    36   4.8    5
(AC224147) Bos taurus clone CH240-448G1, WORKING DRAFT SEQUE...    42   5.0    2
(CU466973) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   5.0    5
(AM439980) Vitis vinifera contig VV78X274289.5, whole genome...    36   5.1    2
(CP001516) Borrelia sp. SV1 plasmid SV1_lp32-12, complete se...    40   5.4    2
(AP008208) Oryza sativa (japonica cultivar-group) genomic DN...    30   5.4    2
(CF924669) DD004D09.ab1 Codonopsis lanceolata cDNA library C...    40   5.6    2
(EY684849) CS00-C2-003-004-D11-CT.F Sweet orange bark, green...    40   5.9    2
(AB078735) Apis cerana mitochondrial CO2 gene for cytochrome...    40   6.0    2
(AB078734) Apis cerana mitochondrial CO2 gene for cytochrome...    40   6.0    2
(AB078733) Apis cerana mitochondrial CO2 gene for cytochrome...    40   6.0    2
(EK344071) 1095467156245 Global-Ocean-Sampling_GS-31-01-01-1...    34   6.3    2
(CZ544094) SRAA-aad53h06.g1 Strongyloides ratti whole genome...    38   6.5    2
(FH017089) CHO_OF447xb04r1.ab1 CHO_OF Nicotiana tabacum geno...    40   6.6    2
(EK352471) 1095468048831 Global-Ocean-Sampling_GS-31-01-01-1...    34   6.9    2
(EJ617268) 1092963030141 Global-Ocean-Sampling_GS-29-01-01-1...    40   7.1    2
(DU925648) 350470 Tomato EcoRI BAC Library Solanum lycopersi...    34   7.3    2
(AF068139) Cryphonectria parasitica S5 ribosomal protein/mat...    34   7.4    3
(AM447416) Vitis vinifera, whole genome shotgun sequence, co...    40   7.4    3
(AX345288) Sequence 359 from Patent WO0200928.                     38   7.9    2
(AM464572) Vitis vinifera contig VV78X255713.10, whole genom...    34   7.9    3
(AJ307662) Oryza sativa genomic DNA fragment, chromosome 2.        30   8.0    2
(AP005006) Oryza sativa Japonica Group genomic DNA, chromoso...    30   8.4    2
(CR762493) Zebrafish DNA sequence from clone DKEY-228B19 in ...    32   8.4    2
(AC216413) Populus trichocarpa clone POP035-J17, complete se...    32   8.5    2
(AP005289) Oryza sativa Japonica Group genomic DNA, chromoso...    30   8.5    2
(AC092044) Homo sapiens chromosome 3 clone RP11-146E16, comp...    34   8.8    4
(AX344555) Sequence 6 from Patent WO0200932.                       32   9.0    7
(BX664720) Zebrafish DNA sequence from clone DKEYP-4H4 in li...    36   9.3    4
(AF404306) Rhizophydium sp. 136 mitochondrion, complete genome.    32   9.8    6

>(C84797) Dictyostelium discoideum slug cDNA, clone SSF853.
          Length = 447

 Score =  398 bits (201), Expect(2) = e-177
 Identities = 201/201 (100%)
 Strand = Plus / Plus


Query: 1   aaacatttaaatatatataaagatcgaaatgagcagaatgaatgatgaaacaatggagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaacatttaaatatatataaagatcgaaatgagcagaatgaatgatgaaacaatggagga 60


Query: 61  taaacccgatgattcaaatggtccactctcaattttaatggatagtgtaaataataatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taaacccgatgattcaaatggtccactctcaattttaatggatagtgtaaataataatac 120


Query: 121 tcaagttcttataaatgttagaaataataaaaaacttttaggtagagttagagcatttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaagttcttataaatgttagaaataataaaaaacttttaggtagagttagagcatttga 180


Query: 181 tcgtcattgtaatatggtttt 201
           |||||||||||||||||||||
Sbjct: 181 tcgtcattgtaatatggtttt 201

 Score =  260 bits (131), Expect(2) = e-177
 Identities = 131/131 (100%)
 Strand = Plus / Plus


Query: 266 ccaattaacaaagatcgtttcatcagtaaaatgtttttaagaggagattcagtaatttta 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ccaattaacaaagatcgtttcatcagtaaaatgtttttaagaggagattcagtaatttta 325


Query: 326 gttttaaagaaccctttaggtgcaccaccacaagcaaattaataatttaaatttaatatg 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gttttaaagaaccctttaggtgcaccaccacaagcaaattaataatttaaatttaatatg 385


Query: 386 atatttttaga 396
           |||||||||||
Sbjct: 386 atatttttaga 396

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 554,053,799
Number of extensions: 39438390
Number of successful extensions: 3694908
Number of sequences better than 10.0: 350
Length of query: 446
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 423
Effective length of database: 102,190,702,835
Effective search space: 43226667299205
Effective search space used: 43226667299205
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 8. 1
Homology vs Protein 
Query= Contig-U05174-1 (Contig-U05174-1Q) /CSM_Contig/Contig-U05174-1Q.Seq.d
         (446 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF082147_1(EF082147|pid:none) Picea sitchensis clone WS0297_I14 ...   149   4e-35
CS560102_1(CS560102|pid:none) Sequence 689 from Patent WO2006032...   146   2e-34
BT035867_1(BT035867|pid:none) Zea mays full-length cDNA clone ZM...   145   4e-34
EF144439_1(EF144439|pid:none) Populus trichocarpa clone PX0019_H...   145   6e-34
CS559888_1(CS559888|pid:none) Sequence 475 from Patent WO2006032...   144   1e-33
AP008211_796(AP008211|pid:none) Oryza sativa (japonica cultivar-...   144   1e-33
BT087412_1(BT087412|pid:none) Zea mays full-length cDNA clone ZM...   144   1e-33
BT046929_1(BT046929|pid:none) Salmo salar clone ssal-evd-516-284...   142   4e-33
EU284828_1(EU284828|pid:none) TSA: Elaeis guineensis EgEfMPOB000...   142   4e-33
BT057442_1(BT057442|pid:none) Salmo salar clone ssal-evf-552-086...   142   4e-33
(Q9VI10) RecName: Full=Probable small nuclear ribonucleoprotein ...   142   4e-33
BT073683_1(BT073683|pid:none) Oncorhynchus mykiss clone omyk-evo...   142   4e-33
BT073272_1(BT073272|pid:none) Oncorhynchus mykiss clone omyk-evn...   142   5e-33
BT073620_1(BT073620|pid:none) Oncorhynchus mykiss clone omyk-evn...   142   5e-33
BC088924_1(BC088924|pid:none) Xenopus laevis cDNA clone MGC:8508...   141   6e-33
BT077476_1(BT077476|pid:none) Lepeophtheirus salmonis Pacific fo...   141   8e-33
BT073756_1(BT073756|pid:none) Oncorhynchus mykiss clone omyk-evo...   140   1e-32
BT079318_1(BT079318|pid:none) Esox lucius clone eluc-evq-513-356...   140   1e-32
AK227792_1(AK227792|pid:none) Arabidopsis thaliana mRNA for puta...   140   1e-32
BT073897_1(BT073897|pid:none) Oncorhynchus mykiss clone omyk-evo...   140   1e-32
FN357550_6(FN357550|pid:none) Schistosoma mansoni genome sequenc...   140   2e-32
DQ658330_1(DQ658330|pid:none) Emiliania huxleyi clone Plate2_C01...   139   2e-32
BT076212_1(BT076212|pid:none) Caligus rogercresseyi clone crog-e...   139   3e-32
BT074081_1(BT074081|pid:none) Oncorhynchus mykiss clone omyk-evo...   139   4e-32
BT053359_1(BT053359|pid:none) Medicago truncatula clone MTYFP_FQ...   138   5e-32
BT078860_1(BT078860|pid:none) Esox lucius clone eluc-evq-522-076...   138   7e-32
(Q18786) RecName: Full=Probable small nuclear ribonucleoprotein ...   136   2e-31
DQ868529_1(DQ868529|pid:none) Bombyx mori small nuclear ribonucl...   136   3e-31
EU965426_1(EU965426|pid:none) Zea mays clone 285958 unknown mRNA.     132   3e-30
AE017342_303(AE017342|pid:none) Cryptococcus neoformans var. neo...   127   2e-28
CP001574_165(CP001574|pid:none) Micromonas sp. RCC299 chromosome...   125   6e-28
AK340437_1(AK340437|pid:none) Acyrthosiphon pisum ACYPI003451 mR...   125   6e-28
DQ864832_1(DQ864832|pid:none) Pfiesteria piscicida clone ppi-5p-...   122   4e-27
FN321092_1(FN321092|pid:none) Schistosoma japonicum isolate Anhu...   119   3e-26
AP008207_3774(AP008207|pid:none) Oryza sativa (japonica cultivar...   115   5e-25
AM920436_866(AM920436|pid:none) Penicillium chrysogenum Wisconsi...   112   5e-24
AJ698365_1(AJ698365|pid:none) Euplotes vannus macronuclear gene ...   111   7e-24
FM992689_565(FM992689|pid:none) Candida dubliniensis CD36 chromo...   109   4e-23
AM910986_16(AM910986|pid:none) Plasmodium knowlesi strain H chro...   109   4e-23
(Q06217) RecName: Full=Small nuclear ribonucleoprotein Sm D2;   ...   108   6e-23
CU928176_612(CU928176|pid:none) Zygosaccharomyces rouxii strain ...   108   6e-23
AP007166_339(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...   108   8e-23
CP000499_476(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...   108   8e-23
CR382132_287(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...   107   1e-22
CR380952_198(CR380952|pid:none) Candida glabrata strain CBS138 c...   105   5e-22
CR940348_230(CR940348|pid:none) Theileria annulata strain Ankara...   104   1e-21
CR382138_91(CR382138|pid:none) Debaryomyces hansenii strain CBS7...   102   4e-21
AE016820_646(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...   101   7e-21
CU928171_642(CU928171|pid:none) Kluyveromyces thermotolerans str...   101   1e-20
BT084172_1(BT084172|pid:none) Zea mays full-length cDNA clone ZM...    99   5e-20
AL513466_20(AL513466|pid:none) Neurospora crassa DNA linkage gro...    96   3e-19
CS560152_1(CS560152|pid:none) Sequence 739 from Patent WO2006032...    92   4e-18
CS560144_1(CS560144|pid:none) Sequence 731 from Patent WO2006032...    91   1e-17
EU974140_1(EU974140|pid:none) Zea mays clone 440937 unknown mRNA.      73   4e-12
AM494970_348(AM494970|pid:none) Leishmania braziliensis chromoso...    63   4e-09
AL590449_159(AL590449|pid:none) chromosome X of strain GB-M1 of ...    62   5e-09
AM502251_301(AM502251|pid:none) Leishmania infantum chromosome 3...    60   3e-08
AY042797_1(AY042797|pid:none) Arabidopsis thaliana small nuclear...    57   2e-07
AL132865_13(AL132865|pid:none) Caenorhabditis elegans YAC Y62E10...    53   3e-06
CR940348_847(CR940348|pid:none) Theileria annulata strain Ankara...    52   9e-06
CR382128_421(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...    51   1e-05
BT077943_1(BT077943|pid:none) Lepeophtheirus salmonis Pacific fo...    51   1e-05
BT078122_1(BT078122|pid:none) Lepeophtheirus salmonis Pacific fo...    50   3e-05
BT079966_1(BT079966|pid:none) Esox lucius clone eluc-evq-524-126...    49   4e-05
BT056414_1(BT056414|pid:none) Salmo salar clone ssal-evf-505-189...    49   4e-05
BC133264_1(BC133264|pid:none) Xenopus laevis hypothetical protei...    49   6e-05
BC156007_1(BC156007|pid:none) Xenopus tropicalis cDNA clone MGC:...    49   6e-05
FN357573_3(FN357573|pid:none) Schistosoma mansoni genome sequenc...    49   7e-05
AK227392_1(AK227392|pid:none) Arabidopsis thaliana mRNA for hypo...    48   1e-04
AC036104_12(AC036104|pid:none) Sequence of BAC F16F4 from Arabid...    48   1e-04
AM270327_2(AM270327|pid:none) Aspergillus niger contig An14c0200...    48   1e-04
AK060459_1(AK060459|pid:none) Oryza sativa Japonica Group cDNA c...    48   1e-04
BT039030_1(BT039030|pid:none) Zea mays full-length cDNA clone ZM...    47   2e-04
GN111378_1(GN111378|pid:none) Sequence 16159 from Patent WO20090...    47   2e-04
AC146567_7(AC146567|pid:none) Medicago truncatula clone mth2-99p...    47   2e-04
AC079283_3(AC079283|pid:none) Arabidopsis thaliana chromosome 1 ...    47   2e-04
DQ673394_1(DQ673394|pid:none) Diaphorina citri putative U6 snRNA...    47   2e-04
BC014600_1(BC014600|pid:none) Homo sapiens hypothetical LOC64533...    46   4e-04
DQ443258_1(DQ443258|pid:none) Bombyx mori LSM Sm-like protein fa...    46   5e-04
CP000505_420(CP000505|pid:none) Thermofilum pendens Hrk 5, compl...    46   5e-04
CR382137_190(CR382137|pid:none) Debaryomyces hansenii strain CBS...    45   6e-04
(Q54HH8) RecName: Full=Small nuclear ribonucleoprotein Sm D-like...    45   6e-04
AL844507_190(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    45   0.001
AC117075_88(AC117075|pid:none) Dictyostelium discoideum chromoso...    44   0.001
(Q1ZXK3) RecName: Full=Probable U6 snRNA-associated Sm-like prot...    44   0.001
CP000500_26(CP000500|pid:none) Pichia stipitis CBS 6054 chromoso...    44   0.002
CP000600_32(CP000600|pid:none) Ostreococcus lucimarinus CCE9901 ...    43   0.003
AE016818_470(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    43   0.003
AE006641_687(AE006641|pid:none) Sulfolobus solfataricus P2, comp...    43   0.004
CP001399_1333(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,...    43   0.004
CP001140_1291(CP001140|pid:none) Desulfurococcus kamchatkensis 1...    43   0.004
AM910987_114(AM910987|pid:none) Plasmodium knowlesi strain H chr...    43   0.004
BT049290_1(BT049290|pid:none) Salmo salar clone ssal-evd-574-191...    42   0.005
(Q9Y7M4) RecName: Full=Probable U6 snRNA-associated Sm-like prot...    42   0.007
CR954214_43(CR954214|pid:none) Ostreococcus tauri strain OTTH059...    42   0.007
CU928174_591(CU928174|pid:none) Zygosaccharomyces rouxii strain ...    42   0.009
FN392319_306(FN392319|pid:none) Pichia pastoris GS115 chromosome...    42   0.009
CU928168_675(CU928168|pid:none) Kluyveromyces thermotolerans str...    42   0.009
CP000743_286(CP000743|pid:none) Methanococcus aeolicus Nankai-3,...    41   0.015
CP000493_1510(CP000493|pid:none) Hyperthermus butylicus DSM 5456...    41   0.015
CR380959_35(CR380959|pid:none) Candida glabrata strain CBS138 ch...    40   0.020
BA000023_829(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA, ...    40   0.026
CP000077_1140(CP000077|pid:none) Sulfolobus acidocaldarius DSM 6...    39   0.044
BX950229_1148(BX950229|pid:none) Methanococcus maripaludis strai...    39   0.044
CP000742_462(CP000742|pid:none) Methanococcus vannielii SB, comp...    39   0.044
AB017065_13(AB017065|pid:none) Arabidopsis thaliana genomic DNA,...    39   0.076
AK176073_1(AK176073|pid:none) Arabidopsis thaliana mRNA, complet...    39   0.076
EU958545_1(EU958545|pid:none) Zea mays clone 1701568 unknown mRNA.     38   0.099
AE009441_536(AE009441|pid:none) Pyrobaculum aerophilum str. IM2,...    38   0.099
(Q0W8R9) RecName: Full=Putative snRNP Sm-like protein;  &AM11419...    38   0.13
BA000011_360(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA,...    37   0.22
CP000575_928(CP000575|pid:none) Staphylothermus marinus F1, comp...    37   0.22
CP000561_2116(CP000561|pid:none) Pyrobaculum calidifontis JCM 11...    37   0.22
CP001014_38(CP001014|pid:none) Thermoproteus neutrophilus V24Sta...    37   0.22
(Q465S1) RecName: Full=Putative snRNP Sm-like protein;  &CP00009...    36   0.38
(P57670) RecName: Full=Putative snRNP Sm-like protein;  &AL44506...    36   0.49
AK341565_1(AK341565|pid:none) Acyrthosiphon pisum ACYPI006936 mR...    35   0.84
FB887763_1(FB887763|pid:none) Sequence 107036 from Patent WO2008...    35   0.84
FB887755_1(FB887755|pid:none) Sequence 107028 from Patent WO2008...    35   0.84
AM468572_1(AM468572|pid:none) Vitis vinifera contig VV78X242294....    35   0.84
EU959714_1(EU959714|pid:none) Zea mays clone 219534 small nuclea...    35   0.84
FB887761_1(FB887761|pid:none) Sequence 107034 from Patent WO2008...    35   0.84
T40786(T40786)probable SNRNP SM-like protein - fission yeast  (S...    35   0.84
CP000968_1399(CP000968|pid:none) Candidatus Korarchaeum cryptofi...    35   1.1
AE017341_751(AE017341|pid:none) Cryptococcus neoformans var. neo...    35   1.1
CP000816_974(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co...    34   1.4
CP000678_182(CP000678|pid:none) Methanobrevibacter smithii ATCC ...    34   1.4
AE009439_220(AE009439|pid:none) Methanopyrus kandleri AV19, comp...    34   1.9
FM992695_663(FM992695|pid:none) Candida dubliniensis CD36 chromo...    34   1.9
CU638743_658(CU638743|pid:none) Podospora anserina genomic DNA c...    34   1.9
(P24715) RecName: Full=Probable small nuclear ribonucleoprotein ...    34   1.9
AM487733_1(AM487733|pid:none) Vitis vinifera contig VV78X192487....    34   1.9
CR940352_356(CR940352|pid:none) Theileria annulata strain Ankara...    33   2.4
EF083458_1(EF083458|pid:none) Picea sitchensis clone WS02710_J20...    33   2.4
FB336509_1(FB336509|pid:none) Sequence 4035 from Patent WO200711...    33   2.4
CS560214_1(CS560214|pid:none) Sequence 801 from Patent WO2006032...    33   4.2
FB336495_1(FB336495|pid:none) Sequence 4021 from Patent WO200711...    32   5.4
CP001160_395(CP001160|pid:none) Thalassiosira pseudonana CCMP133...    32   5.4
T34181(T34181)hypothetical protein C49H3.4 - Caenorhabditis eleg...    32   5.4
FB336499_1(FB336499|pid:none) Sequence 4025 from Patent WO200711...    32   5.4
FB336515_1(FB336515|pid:none) Sequence 4041 from Patent WO200711...    32   5.4
CR940347_422(CR940347|pid:none) Theileria annulata strain Ankara...    32   5.4
EF145882_1(EF145882|pid:none) Populus trichocarpa clone WS0113_P...    32   5.4
CP000517_386(CP000517|pid:none) Lactobacillus helveticus DPC 457...    32   5.4
CS560210_1(CS560210|pid:none) Sequence 797 from Patent WO2006032...    32   7.1
EU730902_2(EU730902|pid:none) Brachypodium distachyon clone BAC ...    32   7.1
CU928176_418(CU928176|pid:none) Zygosaccharomyces rouxii strain ...    32   7.1
AY389602_1(AY389602|pid:none) Hyacinthus orientalis small nuclea...    32   7.1
(Q9VLV5) RecName: Full=Probable small nuclear ribonucleoprotein ...    32   7.1
AE014187_409(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    32   7.1
AL445065_271(AL445065|pid:none) Thermoplasma acidophilum complet...    32   7.1
AP000600_3(AP000600|pid:none) Arabidopsis thaliana genomic DNA, ...    32   9.3
AM910987_88(AM910987|pid:none) Plasmodium knowlesi strain H chro...    32   9.3
AY085185_1(AY085185|pid:none) Arabidopsis thaliana clone 13659 m...    32   9.3
EU957388_1(EU957388|pid:none) Zea mays clone 1590564 small nucle...    32   9.3
AF411792_1(AF411792|pid:none) Arabidopsis thaliana At1g19120/F14...    32   9.3
AY084768_1(AY084768|pid:none) Arabidopsis thaliana clone 117369 ...    32   9.3
CR940348_600(CR940348|pid:none) Theileria annulata strain Ankara...    32   9.3

>EF082147_1(EF082147|pid:none) Picea sitchensis clone WS0297_I14
           unknown mRNA.
          Length = 108

 Score =  149 bits (375), Expect = 4e-35
 Identities = 75/107 (70%), Positives = 85/107 (79%), Gaps = 3/107 (2%)
 Frame = +2

Query: 29  MSRMNDETMEDKPDD---SNGPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMV 199
           MS+  DE M +K ++   + GPLS+LM SV NNTQVLIN RNNKKLLGRVRAFDRHCNMV
Sbjct: 1   MSKPMDEDMPEKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMV 60

Query: 200 LENVKEIWTEVPXXXXXXXXXXPINKDRFISKMFLRGDSVILVLKNP 340
           LENVKE+WTEVP          P+NKDRFISKMFLRGDSVI+VL+NP
Sbjct: 61  LENVKEMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 107

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 494,346,334
Number of extensions: 7581067
Number of successful extensions: 20730
Number of sequences better than 10.0: 158
Number of HSP's gapped: 20652
Number of HSP's successfully gapped: 158
Length of query: 148
Length of database: 1,061,185,681
Length adjustment: 110
Effective length of query: 38
Effective length of database: 701,656,401
Effective search space: 26662943238
Effective search space used: 26662943238
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.43  gvh: 0.32  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U05174-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0