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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05133-1
Contig ID Contig-U05133-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U05133-1 (Contig-U05133-1Q) /CSM_Contig/Contig-U05133-1Q.Seq.d
AAAAAAACCTCTTATAAATCTAAAATAAAATAAAATAAAATAAATAAAAA
AAAAAAACAATGTTTGCAGTTGTATTGTTGGTAGGTGCAATTTTAACCTA
CCAATTTGTTAGAAGATTATTTGTAACAAAAGAAGATTTAGAAGATGTTG
ATTCTCTTCATGAAAAATTAAATAAAGAAGTTAATCAACTAAAAAAAGAG
AAATNCCAACTAATAAAACCAACCGTTGATGATTTTAATTCTCAGATTTT
TCAATTAAGTAATAAAGATAGAGATAAATATACAATTGATCTTCATGGGT
TATATTCAGATCATGCAATTTTAGAATTAAAAAATCGAATAAACCAATTA
ATAAAAGAAAAATATAAAGGAAAACTATTAGTTATTACTGGTAGAGGTAG
TCATAGTGTTGGTGAAGCTAAAATTAAACCAAGAGTAAATAGCTTTTTAA
AAGAAAATTCTTTACTATTTGAAGAAAATTCAAAAGGTGGAGCTTTTATT
GTCTACCTAAGTAGTCAAAATGTATTTTTATTATAATAATAAATATAAAT
TTTATTTTATTTTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Gap no gap
Contig length 596
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3963128
End point 3962558
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U05133
List of clone(s) 

est1=SSF539E,1,576
est2=SSI474Z,251,597
Translated Amino Acid sequence 
knll*i*nkik*nk*KKKTMFAVVLLVGAILTYQFVRRLFVTKEDLEDVDSLHEKLNKEV
NQLKKEKXQLIKPTVDDFNSQIFQLSNKDRDKYTIDLHGLYSDHAILELKNRINQLIKEK
YKGKLLVITGRGSHSVGEAKIKPRVNSFLKENSLLFEENSKGGAFIVYLSSQNVFLL***
i*ilfyfilkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kktsykskik*nkinkkkkqclqlycw*vqf*ptnlledyl*qkki*kmlilfmkn*ikk
lin*kkrnxn**nqplmililrffn*vikieiniqlifmgyiqimqf*n*kie*tn**kk
nikeny*lllvevvivlvklklnqe*iaf*kkilyylkkiqkvelllst*vvkmyfyynn
kykfyfilf*kkkkkkkk


Frame B:
kkplinlk*nkik*ikkknnvcscivgrcnfnlpic*kiicnkrrfrrc*fss*kik*rs
*stkkrexptnktnr**f*fsdfsik**r*r*iyn*sswvifrscnfrikksnkpinkrk
i*rktisyyw*r*s*cw*s*n*tksk*lfkrkffti*rkfkrwsfyclpk*skcifiiii
ninfilfyfkkkkkkkkk


Frame C:
knll*i*nkik*nk*KKKTMFAVVLLVGAILTYQFVRRLFVTKEDLEDVDSLHEKLNKEV
NQLKKEKXQLIKPTVDDFNSQIFQLSNKDRDKYTIDLHGLYSDHAILELKNRINQLIKEK
YKGKLLVITGRGSHSVGEAKIKPRVNSFLKENSLLFEENSKGGAFIVYLSSQNVFLL***
i*ilfyfilkkkkkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05133-1 (Contig-U05133-1Q)
/CSM_Contig/Contig-U05133-1Q.Seq.d
         (596 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05133-1 (Contig-U05133-1Q) /CSM_Contig/Conti...   482  e-136
Contig-U11411-1 (Contig-U11411-1Q) /CSM_Contig/Conti...    46  4e-05
Contig-U13748-1 (Contig-U13748-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U11129-1 (Contig-U11129-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U10784-1 (Contig-U10784-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U14650-1 (Contig-U14650-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U13974-1 (Contig-U13974-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U12717-1 (Contig-U12717-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U12230-1 (Contig-U12230-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U11892-1 (Contig-U11892-1Q) /CSM_Contig/Conti...    42  7e-04

>Contig-U05133-1 (Contig-U05133-1Q) /CSM_Contig/Contig-U05133-1Q.Seq.d
          Length = 596

 Score =  482 bits (243), Expect = e-136
 Identities = 260/267 (97%)
 Strand = Plus / Plus

                                                                       
Query: 58  caatgtttgcagttgtattgttggtaggtgcaattttaacctaccaatttgttagaagat 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  caatgtttgcagttgtattgttggtaggtgcaattttaacctaccaatttgttagaagat 117

                                                                       
Query: 118 tatttgtaacaaaagaagatttagaagatgttgattctcttcatgaaaaattaaataaag 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 tatttgtaacaaaagaagatttagaagatgttgattctcttcatgaaaaattaaataaag 177

                                                                       
Query: 178 aagttaatcaactnnnnnnngagaaatnccaactaataaaaccaaccgttgatgatttta 237
           |||||||||||||       ||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 aagttaatcaactaaaaaaagagaaatnccaactaataaaaccaaccgttgatgatttta 237

                                                                       
Query: 238 attctcagatttttcaattaagtaataaagatagagataaatatacaattgatcttcatg 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 attctcagatttttcaattaagtaataaagatagagataaatatacaattgatcttcatg 297

                                      
Query: 298 ggttatattcagatcatgcaattttag 324
           |||||||||||||||||||||||||||
Sbjct: 298 ggttatattcagatcatgcaattttag 324


 Score =  385 bits (194), Expect = e-107
 Identities = 194/194 (100%)
 Strand = Plus / Plus

                                                                       
Query: 375 ctattagttattactggtagaggtagtcatagtgttggtgaagctaaaattaaaccaaga 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctattagttattactggtagaggtagtcatagtgttggtgaagctaaaattaaaccaaga 434

                                                                       
Query: 435 gtaaatagctttttaaaagaaaattctttactatttgaagaaaattcaaaaggtggagct 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gtaaatagctttttaaaagaaaattctttactatttgaagaaaattcaaaaggtggagct 494

                                                                       
Query: 495 tttattgtctacctaagtagtcaaaatgtatttttattataataataaatataaatttta 554
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tttattgtctacctaagtagtcaaaatgtatttttattataataataaatataaatttta 554

                         
Query: 555 ttttattttatttt 568
           ||||||||||||||
Sbjct: 555 ttttattttatttt 568


 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 549 attttattttattttatttt 568
           ||||||||||||||||||||
Sbjct: 41  attttattttattttatttt 22


 Score = 36.2 bits (18), Expect = 0.042
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 551 tttattttattttatttt 568
           ||||||||||||||||||
Sbjct: 44  tttattttattttatttt 27


 Score = 32.2 bits (16), Expect = 0.65
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 549 attttattttatttta 564
           ||||||||||||||||
Sbjct: 36  attttattttatttta 21


>Contig-U11411-1 (Contig-U11411-1Q) /CSM_Contig/Contig-U11411-1Q.Seq.d
          Length = 1518

 Score = 46.1 bits (23), Expect = 4e-05
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 542  aatataaattttattttattttatttt 568
            ||||| |||||||||||||||||||||
Sbjct: 1503 aatattaattttattttattttatttt 1477


 Score = 34.2 bits (17), Expect = 0.16
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 549  attttattttattttat 565
            |||||||||||||||||
Sbjct: 1491 attttattttattttat 1475


>Contig-U13748-1 (Contig-U13748-1Q) /CSM_Contig/Contig-U13748-1Q.Seq.d
          Length = 189

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 547 aaattttattttattttatttt 568
           ||||||||||||||||||||||
Sbjct: 155 aaattttattttattttatttt 134


 Score = 32.2 bits (16), Expect = 0.65
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 549 attttattttatttta 564
           ||||||||||||||||
Sbjct: 148 attttattttatttta 133


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,903
Number of Sequences: 6905
Number of extensions: 17903
Number of successful extensions: 4832
Number of sequences better than 10.0: 828
length of query: 596
length of database: 5,674,871
effective HSP length: 16
effective length of query: 580
effective length of database: 5,564,391
effective search space: 3227346780
effective search space used: 3227346780
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7.12
Homology vs DNA 
Query= Contig-U05133-1 (Contig-U05133-1Q) /CSM_Contig/Contig-U05133-1Q.Seq.d
         (596 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C84759) Dictyostelium discoideum slug cDNA, clone SSF539.        264   e-130  2
(C90429) Dictyostelium discoideum slug cDNA, clone SSI474.        268   e-103  2
(AU072957) Dictyostelium discoideum slug cDNA, clone SSF539.      264   3e-80  2
(U65018) Dictyostelium discoideum mannosyltransferase gene, ...    44   0.005  2
(EL483777) CHUM5658.b1_C24.ab1 CHU(LMS) puzzle sunflower Hel...    54   0.006  1
(EL477046) CHUL5274.b1_C24.ab1 CHU(LMS) puzzle sunflower Hel...    54   0.006  1
(EL456891) CHTM9962.b1_D20.ab1 CHT(LMS) Jerusalem artichoke ...    54   0.006  1
(EL439185) CHTM1436.b1_G24.ab1 CHT(LMS) Jerusalem artichoke ...    54   0.006  1
(EL438828) CHTM14032.b1_O04.ab1 CHT(LMS) Jerusalem artichoke...    54   0.006  1
(EE635187) CHEL5996.b1_G12.ab1 CHE(LMS) serpentine sunflower...    54   0.006  1
(DY939378) CHPX6310.b1_L17.ab1 CHP(XYZ) plains sunflower Hel...    54   0.006  1
(DY912141) CHAX7441.b1_B13.ab1 CHA(XYZ) common wild sunflowe...    54   0.006  1
(GE500667) CCFT2382.g1_K19.ab1 CCF(STU) sunflower Helianthus...    52   0.025  1
(GE500666) CCFT2382.b1_K19.ab1 CCF(STU) sunflower Helianthus...    52   0.025  1
(CW504892) OP__Ba0007N13.f OP__Ba Oryza punctata genomic clo...    50   0.10   1
(CU756251) A BAC library has been constructed from PN40024 g...    40   0.45   2
(CL647979) CH213-157M13.SP6 CH213 Gasterosteus aculeatus gen...    36   1.1    2
(EJ028737) 1095454034065 Global-Ocean-Sampling_GS-26-01-01-1...    34   1.1    2
(AC153019) Mus musculus BAC clone RP23-110D19 from chromosom...    46   1.6    1
(AC213985) Zea mays chromosome 8 clone CH201-416L7; ZMMBBc04...    46   1.6    1
(AC207127) Mus musculus chromosome 1 clone RP23-471I12, WORK...    46   1.6    1
(AC199836) Zea mays chromosome 8 clone CH201-387N12; ZMMBBc0...    46   1.6    1
(ER490115) 1093015322365 Global-Ocean-Sampling_GS-35-01-01-1...    46   1.6    1
(ER430678) 1092963776232 Global-Ocean-Sampling_GS-35-01-01-1...    46   1.6    1
(EJ223619) 1092351321400 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.6    1
(AG583382) Mus musculus molossinus DNA, clone:MSMg01-509M15....    46   1.6    1
(EL452849) CHTM5636.b1_G18.ab1 CHT(LMS) Jerusalem artichoke ...    46   1.6    1
(EL421066) CHCL930.b1_D17.ab1 CHC(LMS) Texas blueweed Helian...    46   1.6    1
(DY950214) CHPY6549.b1_I05.ab1 CHP(XYZ) plains sunflower Hel...    46   1.6    1
(AM881131) Mytilus edulis EST, 5' end sequence, clone mytilu...    46   1.6    1
(GE574008) CCHT734.b1_L16.ab1 CCHT Niger Seed Guizotia abyss...    46   1.6    1
(CD474049) nad03-12ms3-h03 Nad03 Nuphar advena cDNA clone na...    36   1.6    2
(AE017197) Rickettsia typhi str. Wilmington complete genome.       40   1.7    9
(EK018482) 1092955256591 Global-Ocean-Sampling_GS-31-01-01-1...    30   2.8    3
(EJ523850) 1092955165873 Global-Ocean-Sampling_GS-29-01-01-1...    40   2.8    2
(EJ721314) 1092959454180 Global-Ocean-Sampling_GS-30-02-01-1...    40   3.3    2
(EJ734467) 1092961077910 Global-Ocean-Sampling_GS-30-02-01-1...    40   3.6    2
(EJ672237) 1092955063844 Global-Ocean-Sampling_GS-30-02-01-1...    40   3.7    2
(DU891322) 407837 Tomato HindIII BAC Library Solanum lycoper...    38   3.8    2
(BE844259) EST003 Apis mellifera female antennae Lambda ZAP ...    34   4.2    2
(AC205197) Muntiacus muntjak vaginalis clone CH244-451P15, W...    42   4.4    5
(EK058077) 1092960047355 Global-Ocean-Sampling_GS-31-01-01-1...    36   4.8    3
(AC205198) Muntiacus reevesi clone CH245-112E3, WORKING DRAF...    42   5.4    3
(EZ052641) TSA: Zea mays contig53762, mRNA sequence.               44   6.2    1
(AC152065) Mus musculus BAC clone RP23-16D9 from chromosome ...    44   6.2    1
(AC132623) Mus musculus BAC clone RP23-123N23 from chromosom...    44   6.2    1
(AC206889) MACACA MULATTA BAC clone CH250-299I24 from chromo...    44   6.2    1
(AC205194) MACACA MULATTA BAC clone CH250-144P14 from chromo...    44   6.2    1
(EU959699) Zea mays clone 219427 SWI/SNF-related, matrix-ass...    44   6.2    1
(CR382137) Debaryomyces hansenii strain CBS767 chromosome E ...    44   6.2    1
(BT067210) Zea mays full-length cDNA clone ZM_BFb0287M07 mRN...    44   6.2    1
(BT034194) Zea mays full-length cDNA clone ZM_BFc0028M09 mRN...    44   6.2    1
(AP008217) Oryza sativa (japonica cultivar-group) genomic DN...    44   6.2    1
(AP008209) Oryza sativa (japonica cultivar-group) genomic DN...    44   6.2    1
(AM439293) Vitis vinifera contig VV78X229718.7, whole genome...    44   6.2    1
(AC137597) Genomic sequence for Oryza sativa, Nipponbare str...    44   6.2    1
(AC137588) Oryza sativa (japonica cultivar-group) chromosome...    44   6.2    1
(EA381769) Sequence 30593 from patent US 7314974.                  44   6.2    1
(Z81479) Caenorhabditis elegans Cosmid C34F6.                      44   6.2    1
(CU469050) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.2    1
(CU469034) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.2    1
(AC217133) Macaca mulatta chromosome Y clone CH250-380I15, W...    44   6.2    1
(AC210455) Oryza glaberrima clone OG_BBa0020J03, *** SEQUENC...    44   6.2    1
(AC170091) Bos taurus clone CH240-262E1, WORKING DRAFT SEQUE...    44   6.2    1
(AZ120574) RPCI-23-450J8.TV RPCI-23 Mus musculus genomic clo...    44   6.2    1
(AQ933792) RPCI-23-256E14.TV RPCI-23 Mus musculus genomic cl...    44   6.2    1
(ET554624) fcg3x.607550o19 C. graminicola genomic sequence G...    44   6.2    1
(ER137745) 1095522099170 Global-Ocean-Sampling_GS-33-01-01-1...    44   6.2    1
(EJ967790) 1093022056306 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.2    1
(EJ962405) 1093022011089 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.2    1
(DU685977) Bst018513 lambda03 Boechera stricta genomic clone...    44   6.2    1
(CG957278) MBEDX69TRC mth2 Medicago truncatula genomic clone...    44   6.2    1
(EC888826) ZM_BFc0028M09.r ZM_BFc Zea mays cDNA clone ZM_BFc...    44   6.2    1
(EC888825) ZM_BFc0028M09.f ZM_BFc Zea mays cDNA clone ZM_BFc...    44   6.2    1
(DY690287) ZM_BFb0287M07.r ZM_BFb Zea mays cDNA 5', mRNA seq...    44   6.2    1
(DV520677) ZM_BFb0205K07.r ZM_BFb Zea mays cDNA 5', mRNA seq...    44   6.2    1
(DV520676) ZM_BFb0205K07.f ZM_BFb Zea mays cDNA 3', mRNA seq...    44   6.2    1
(DR967218) ZM_BFb0087P20.r ZM_BFb Zea mays cDNA 5', mRNA seq...    44   6.2    1
(DN203661) MEST1120_A01.T7-1 UGA-ZmSAM-XZ2 Zea mays cDNA, mR...    44   6.2    1
(CF635800) zmrww00_0A20-015-f11.s0 zmrww00 Zea mays cDNA 3',...    44   6.2    1
(CF633171) zmrws48_0B20-012-e03.s3 zmrws48 Zea mays cDNA 3',...    44   6.2    1
(CA117376) SCBFLR1039A01.g LR1 Saccharum officinarum cDNA cl...    44   6.2    1
(CA101190) SCCCHR1002A06.g HR1 Saccharum officinarum cDNA cl...    44   6.2    1
(BU103354) SCCCHR1002A06.g Saccharum officinarum mRNA (Nogue...    44   6.2    1
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    38   7.2    7
(EJ899901) 1093018484529 Global-Ocean-Sampling_GS-30-02-01-1...    34   8.7    2

>(C84759) Dictyostelium discoideum slug cDNA, clone SSF539.
          Length = 377

 Score =  264 bits (133), Expect(2) = e-130
 Identities = 139/142 (97%)
 Strand = Plus / Plus


Query: 375 ctattagttattactggtagaggtagtcatagtgttggtgaagctaaaattaaaccaaga 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 ctattagttattactggtagaggtagtcatagtgttggtgaagctaaaattaaaccaaga 234


Query: 435 gtaaatagctttttaaaagaaaattctttactatttgaagaaaattcaaaaggtggagct 494
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 235 gtaaatagctttttaaaagaaaantctttactatttgaagaaaattcaaaaggtgganct 294


Query: 495 tttattgtctacctaagtagtc 516
           || |||||||||||||||||||
Sbjct: 295 ttnattgtctacctaagtagtc 316

 Score =  238 bits (120), Expect(2) = e-130
 Identities = 122/123 (99%)
 Strand = Plus / Plus


Query: 201 aaatnccaactaataaaaccaaccgttgatgattttaattctcagatttttcaattaagt 260
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaatcccaactaataaaaccaaccgttgatgattttaattctcagatttttcaattaagt 60


Query: 261 aataaagatagagataaatatacaattgatcttcatgggttatattcagatcatgcaatt 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aataaagatagagataaatatacaattgatcttcatgggttatattcagatcatgcaatt 120


Query: 321 tta 323
           |||
Sbjct: 121 tta 123

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 604,713,616
Number of extensions: 38366058
Number of successful extensions: 3467527
Number of sequences better than 10.0: 86
Length of query: 596
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 573
Effective length of database: 102,190,702,835
Effective search space: 58555272724455
Effective search space used: 58555272724455
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 8. 1
Homology vs Protein 
Query= Contig-U05133-1 (Contig-U05133-1Q) /CSM_Contig/Contig-U05133-1Q.Seq.d
         (596 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q08954) RecName: Full=Smr domain-containing protein YPL199C;  &...    57   3e-07
FN392320_20(FN392320|pid:none) Pichia pastoris GS115 chromosome ...    55   1e-06
(Q9UTP4) RecName: Full=Smr domain-containing protein C11H11.03c;...    54   3e-06
CR382124_137(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    50   4e-05
BC156351_1(BC156351|pid:none) Synthetic construct Mus musculus c...    50   5e-05
AE016819_151(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    50   5e-05
CP000498_365(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    49   1e-04
AB037834_1(AB037834|pid:none) Homo sapiens mRNA for KIAA1413 pro...    47   3e-04
(Q86UW6) RecName: Full=NEDD4-binding protein 2;          Short=N...    47   3e-04
AM486316_2(AM486316|pid:none) Vitis vinifera contig VV78X084040....    47   3e-04
FM992689_623(FM992689|pid:none) Candida dubliniensis CD36 chromo...    47   4e-04
BX649606_59(BX649606|pid:none) Aspergillus fumigatus BAC pilot p...    47   5e-04
CR380956_472(CR380956|pid:none) Candida glabrata strain CBS138 c...    46   9e-04
CU633900_659(CU633900|pid:none) Podospora anserina genomic DNA c...    45   0.002
CR382131_69(CR382131|pid:none) Yarrowia lipolytica strain CLIB12...    44   0.003
(P36075) RecName: Full=Ubiquitin-binding protein CUE2; AltName: ...    44   0.004
AP007161_482(AP007161|pid:none) Aspergillus oryzae RIB40 genomic...    44   0.004
BC125868_1(BC125868|pid:none) Danio rerio zgc:153456, mRNA (cDNA...    43   0.008
CP000148_2521(CP000148|pid:none) Geobacter metallireducens GS-15...    42   0.010
AM270168_169(AM270168|pid:none) Aspergillus niger contig An08c01...    42   0.013
CP000698_3827(CP000698|pid:none) Geobacter uraniireducens Rf4, c...    42   0.013
AE017226_1244(AE017226|pid:none) Treponema denticola ATCC 35405,...    42   0.017
AE006470_1549(AE006470|pid:none) Chlorobium tepidum TLS, complet...    41   0.029
AL445565_87(AL445565|pid:none) Mycoplasma pulmonis (strain UAB C...    41   0.029
AE017180_1007(AE017180|pid:none) Geobacter sulfurreducens PCA, c...    41   0.029
AL662973_12(AL662973|pid:none) Oryza sativa genomic DNA, chromos...    40   0.049
BX548156_10(BX548156|pid:none) Oryza sativa genomic DNA, chromos...    40   0.049
FN357481_8(FN357481|pid:none) Schistosoma mansoni genome sequenc...    40   0.064
CR380959_441(CR380959|pid:none) Candida glabrata strain CBS138 c...    40   0.064
EU974950_1(EU974950|pid:none) Zea mays clone 461581 hypothetical...    40   0.064
FM992692_217(FM992692|pid:none) Candida dubliniensis CD36 chromo...    39   0.084
AM502249_352(AM502249|pid:none) Leishmania infantum chromosome 31.     39   0.084
AM269976_69(AM269976|pid:none) Aspergillus niger contig An01c029...    39   0.11
CR382138_236(CR382138|pid:none) Debaryomyces hansenii strain CBS...    38   0.19
T16162(T16162) hypothetical protein F26A1.13 - Caenorhabditis el...    38   0.19
CR954208_231(CR954208|pid:none) Ostreococcus tauri strain OTTH05...    38   0.24
CP000084_333(CP000084|pid:none) Candidatus Pelagibacter ubique H...    38   0.24
CP001402_115(CP001402|pid:none) Sulfolobus islandicus M.16.4, co...    37   0.32
CP001399_112(CP001399|pid:none) Sulfolobus islandicus L.S.2.15, ...    37   0.32
(Q54BH5) RecName: Full=PI-PLC X-box domain-containing protein DD...    37   0.32
AY394561_14(AY394561|pid:none) Campylobacter jejuni plasmid pTet...    37   0.54
AY714214_1(AY714214|pid:none) Campylobacter jejuni strain 81-176...    37   0.54
AY394560_14(AY394560|pid:none) Campylobacter coli plasmid pCC31,...    37   0.54
AY811598_1(AY811598|pid:none) Schistosoma japonicum SJCHGC04853 ...    37   0.54
CP001089_499(CP001089|pid:none) Geobacter lovleyi SZ, complete g...    36   0.71
(Q4AAD3) RecName: Full=Alanyl-tRNA synthetase;          EC=6.1.1...    36   0.93
CP001130_369(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, co...    36   0.93
CR380956_310(CR380956|pid:none) Candida glabrata strain CBS138 c...    36   0.93
(Q601M2) RecName: Full=Alanyl-tRNA synthetase;          EC=6.1.1...    36   0.93
CP000312_2045(CP000312|pid:none) Clostridium perfringens SM101, ...    36   0.93
CP000123_804(CP000123|pid:none) Mycoplasma capricolum subsp. cap...    35   1.2
AM910993_417(AM910993|pid:none) Plasmodium knowlesi strain H chr...    35   1.2
(B1KTA5) RecName: Full=Cysteinyl-tRNA synthetase;          EC=6....    35   1.2
AJ786380_1(AJ786380|pid:none) Cryptosporidium parvum mt1 gene fo...    35   1.2
(A7GJ96) RecName: Full=Cysteinyl-tRNA synthetase;          EC=6....    35   1.2
CP001581_3733(CP001581|pid:none) Clostridium botulinum A2 str. K...    35   1.2
AF315740_1(AF315740|pid:none) Arabidopsis thaliana PRLI-interact...    35   1.2
AE001362_117(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    35   1.6
AE009951_382(AE009951|pid:none) Fusobacterium nucleatum subsp. n...    35   1.6
U19754_2(U19754|pid:none) Borrelia burgdorferi outer surface pro...    35   1.6
CR382137_1042(CR382137|pid:none) Debaryomyces hansenii chromosom...    35   1.6
FN357292_29(FN357292|pid:none) Schistosoma mansoni genome sequen...    35   1.6
CP001326_262(CP001326|pid:none) Micromonas sp. RCC299 chromosome...    35   1.6
(Q58376) RecName: Full=Uncharacterized protein MJ0966;  &F64420(...    35   1.6
AE014185_30(AE014185|pid:none) Plasmodium falciparum 3D7 chromos...    35   2.1
CT005268_287(CT005268|pid:none) Leishmania major strain Friedlin...    35   2.1
DQ068067_2(DQ068067|pid:none) Uncultured bacterium BAC13K9BAC, c...    35   2.1
CP001357_2106(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    35   2.1
CP001016_3015(CP001016|pid:none) Beijerinckia indica subsp. indi...    35   2.1
EU016616_20(EU016616|pid:none) Uncultured Group I marine crenarc...    35   2.1
CR767821_388(CR767821|pid:none) Ehrlichia ruminantium strain Wel...    35   2.1
CU207366_1544(CU207366|pid:none) Gramella forsetii KT0803 comple...    34   2.7
AF293344_1(AF293344|pid:none) Phaseolus vulgaris KAP-2 (KAP-2) m...    34   2.7
BC132091_1(BC132091|pid:none) Mus musculus serine (or cysteine) ...    34   2.7
AP009552_2304(AP009552|pid:none) Microcystis aeruginosa NIES-843...    34   2.7
CP000813_1492(CP000813|pid:none) Bacillus pumilus SAFR-032, comp...    34   2.7
AP008207_725(AP008207|pid:none) Oryza sativa (japonica cultivar-...    34   2.7
AE014296_1550(AE014296|pid:none) Drosophila melanogaster chromos...    34   2.7
AE016823_1983(AE016823|pid:none) Leptospira interrogans serovar ...    34   3.5
AY144685_1(AY144685|pid:none) Mus musculus strain Car-S squamous...    34   3.5
AE010300_1761(AE010300|pid:none) Leptospira interrogans serovar ...    34   3.5
BA000001_1224(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, ...    34   3.5
AY367774_1(AY367774|pid:none) Mus musculus serpinb3b mRNA, compl...    34   3.5
CP001389_2854(CP001389|pid:none) Rhizobium sp. NGR234, complete ...    34   3.5
BA000023_2280(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,...    34   3.5
AL031634_1(AL031634|pid:none) Caenorhabditis elegans YAC Y32B12C...    34   3.5
CP000102_1059(CP000102|pid:none) Methanosphaera stadtmanae DSM 3...    34   3.5
AE017196_848(AE017196|pid:none) Wolbachia endosymbiont of Drosop...    33   4.6
(Q898C7) RecName: Full=Chaperone protein clpB;  &AE015927_441(AE...    33   4.6
BA000028_2491(BA000028|pid:none) Oceanobacillus iheyensis HTE831...    33   4.6
CU928168_248(CU928168|pid:none) Kluyveromyces thermotolerans str...    33   4.6
AY701528_29(AY701528|pid:none) Campylobacter jejuni plasmid pCG8...    33   4.6
AM910995_58(AM910995|pid:none) Plasmodium knowlesi strain H chro...    33   4.6
CP000776_1578(CP000776|pid:none) Campylobacter hominis ATCC BAA-...    33   6.0
AE014185_74(AE014185|pid:none) Plasmodium falciparum 3D7 chromos...    33   6.0
AY367775_1(AY367775|pid:none) Mus musculus serpinb3c mRNA, compl...    33   6.0
AK003220_1(AK003220|pid:none) Mus musculus 18-day embryo whole b...    33   6.0
AE017196_457(AE017196|pid:none) Wolbachia endosymbiont of Drosop...    33   6.0
CR382136_903(CR382136|pid:none) Debaryomyces hansenii chromosome...    33   6.0
AL844508_375(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    33   6.0
AF112359_1(AF112359|pid:none) Schmidtea mediterranea clone M11 m...    33   6.0
AE016830_889(AE016830|pid:none) Enterococcus faecalis V583, comp...    33   6.0
DQ016665_1(DQ016665|pid:none) Borrelia garinii isolate I-29 P83/...    33   6.0
AE014187_461(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    33   6.0
AY372126_1(AY372126|pid:none) Plasmodium falciparum MC_var5 eryt...    33   6.0
DQ916320_1(DQ916320|pid:none) Borrelia garinii strain Nov 405 p8...    33   6.0
AL844505_4(AL844505|pid:none) Plasmodium falciparum 3D7 chromoso...    33   6.0
CR382127_395(CR382127|pid:none) Yarrowia lipolytica strain CLIB1...    33   7.9
AM999887_1118(AM999887|pid:none) Wolbachia endosymbiont of Culex...    33   7.9
CP001357_1943(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    33   7.9
AB093216_1(AB093216|pid:none) Mus musculus mRNA for mKIAA0203 pr...    33   7.9
AL844509_577(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    33   7.9
CP000583_316(CP000583|pid:none) Ostreococcus lucimarinus CCE9901...    33   7.9
AX468284_1(AX468284|pid:none) Sequence 71 from Patent WO0216422....    33   7.9
AJ278986_1(AJ278986|pid:none) Pichia etchellsii plasmid pPE1B.         33   7.9
AM412317_2162(AM412317|pid:none) Clostridium botulinum A str. AT...    33   7.9
BC150774_1(BC150774|pid:none) Mus musculus RB1-inducible coiled-...    33   7.9
AE017198_1209(AE017198|pid:none) Lactobacillus johnsonii NCC 533...    33   7.9
(Q02173) RecName: Full=M-protein, striated muscle;  &A44027(A440...    33   7.9
DQ916328_1(DQ916328|pid:none) Borrelia garinii strain Tom 5202 p...    33   7.9
AF228421_1(AF228421|pid:none) Homo sapiens hypothetical protein ...    33   7.9
DQ011584_1(DQ011584|pid:none) Plasmodium cynomolgi Mulligan reti...    33   7.9
S61462(S61462) p83/100 protein - Lyme disease spirochete (strain...    33   7.9
DQ916332_1(DQ916332|pid:none) Borrelia garinii strain Tom 2903 p...    33   7.9
CP000922_546(CP000922|pid:none) Anoxybacillus flavithermus WK1, ...    33   7.9
BA000018_1856(BA000018|pid:none) Staphylococcus aureus subsp. au...    33   7.9
CP000814_992(CP000814|pid:none) Campylobacter jejuni subsp. jeju...    33   7.9
CP001357_2291(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    33   7.9

>(Q08954) RecName: Full=Smr domain-containing protein YPL199C;
           &S65218(S65218) &Z73555_1(Z73555|pid:none)
          Length = 240

 Score = 57.4 bits (137), Expect = 3e-07
 Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 10/152 (6%)
 Frame = +3

Query: 99  YQFVRRL----FVTKEDLE-DVDSLHEKLNKEVNQLKKEKXQLIKPTVDDFNSQ----IF 251
           YQ +RRL    +  ++ L  +  + +++ +K++     EK +    T +DFN Q    +F
Sbjct: 26  YQRLRRLADEAYKKRDQLSHESQTAYQQGDKKLAHELSEKSKAQLKTAEDFNMQAAEYVF 85

Query: 252 QLSNKDRDKYTIDLHGLYSDHAILELKNRINQLIKEKYKGKLLVITGRGSHSV-GEAKIK 428
             +N D     IDLHGLY   A+  L+ RI   I +  + +L VI G+G HS  G AK+K
Sbjct: 86  VENNADSSSNEIDLHGLYVKEALFILQKRIKFAI-DHNEPQLNVIVGKGLHSQNGIAKLK 144

Query: 429 PRVNSFLKENSLLFEENSKGGAFIVYLSSQNV 524
           P +  F  ++ +      KG + ++ L  Q V
Sbjct: 145 PSIEEFCAKHGIR-NHLEKGNSGVLVLELQGV 175

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 512,708,211
Number of extensions: 7252405
Number of successful extensions: 32350
Number of sequences better than 10.0: 128
Number of HSP's gapped: 32234
Number of HSP's successfully gapped: 129
Length of query: 198
Length of database: 1,061,185,681
Length adjustment: 122
Effective length of query: 76
Effective length of database: 662,435,025
Effective search space: 50345061900
Effective search space used: 50345061900
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.98  gvh: 0.61  alm: 0.25  top: 0.13  tms: 0.07  mit: 0.37  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: nuclear
	 16.0 %: cytoplasmic
	 16.0 %: Golgi
	 16.0 %: endoplasmic reticulum
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal
	  4.0 %: plasma membrane

>> prediction for Contig-U05133-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0