Contig-U05123-1
Contig ID Contig-U05123-1
Contig update 2001. 8.29
Contig sequence
>Contig-U05123-1 (Contig-U05123-1Q) /CSM_Contig/Contig-U05123-1Q.Seq.d
ATAGTAATGAAGAAGAAGAAACGAATTCTGGGGATAATTCAAAAAACAAT
AGCAATAATTATTATTATTATTTAAAAAAAAAAAAAAAAAAAAATTATTT
CAATATTATTGGTCAATTAATTTAAAGTAATATTACAACAAAAAATTTCT
CAATTCAATCATACACACATTATTATTAAAATTCCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAA

Gap no gap
Contig length 234
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1780714
End point 1780892
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05123
List of clone(s)

est1=SSF470E,1,235
Translated Amino Acid sequence
SNEEEETNSGDNSKNNSNNYYYYLKKKKKKNYFNIIGQLI*snittknfsiqsythyy*n
skkkkkkkkkkkkkkek


Translated Amino Acid sequence (All Frames)
Frame A:
ivmkkkkrilgiiqktiaiiiiii*kkkkkkiisillvn*fkvilqqkisqfnhthiiik
ipkkkkkkkkkkkkkkkk


Frame B:
***rrrnefwg*fkkq*q*llllfkkkkkkklfqyywsinlk*yynkkflnsiihtlllk
fqkkkkkkkkkkkkkrk


Frame C:
SNEEEETNSGDNSKNNSNNYYYYLKKKKKKNYFNIIGQLI*snittknfsiqsythyy*n
skkkkkkkkkkkkkkek


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05123-1 (Contig-U05123-1Q)
/CSM_Contig/Contig-U05123-1Q.Seq.d
(234 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05123-1 (Contig-U05123-1Q) /CSM_Contig/Conti... 180 4e-46
Contig-U13287-1 (Contig-U13287-1Q) /CSM_Contig/Conti... 42 3e-04
Contig-U12378-1 (Contig-U12378-1Q) /CSM_Contig/Conti... 40 0.001
Contig-U01718-1 (Contig-U01718-1Q) /CSM_Contig/Conti... 40 0.001
Contig-U14377-1 (Contig-U14377-1Q) /CSM_Contig/Conti... 38 0.004
Contig-U14060-1 (Contig-U14060-1Q) /CSM_Contig/Conti... 38 0.004
Contig-U13994-1 (Contig-U13994-1Q) /CSM_Contig/Conti... 38 0.004
Contig-U13711-1 (Contig-U13711-1Q) /CSM_Contig/Conti... 38 0.004
Contig-U13278-1 (Contig-U13278-1Q) /CSM_Contig/Conti... 38 0.004
Contig-U12823-1 (Contig-U12823-1Q) /CSM_Contig/Conti... 38 0.004

>Contig-U05123-1 (Contig-U05123-1Q) /CSM_Contig/Contig-U05123-1Q.Seq.d
Length = 234

Score = 180 bits (91), Expect = 4e-46
Identities = 91/91 (100%)
Strand = Plus / Plus


Query: 95 ttatttcaatattattggtcaattaatttaaagtaatattacaacaaaaaatttctcaat 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ttatttcaatattattggtcaattaatttaaagtaatattacaacaaaaaatttctcaat 154


Query: 155 tcaatcatacacacattattattaaaattcc 185
|||||||||||||||||||||||||||||||
Sbjct: 155 tcaatcatacacacattattattaaaattcc 185


Score = 145 bits (73), Expect = 2e-35
Identities = 73/73 (100%)
Strand = Plus / Plus


Query: 1 atagtaatgaagaagaagaaacgaattctggggataattcaaaaaacaatagcaataatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atagtaatgaagaagaagaaacgaattctggggataattcaaaaaacaatagcaataatt 60


Query: 61 attattattattt 73
|||||||||||||
Sbjct: 61 attattattattt 73


>Contig-U13287-1 (Contig-U13287-1Q) /CSM_Contig/Contig-U13287-1Q.Seq.d
Length = 136

Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Minus


Query: 53 caataattattattattattt 73
|||||||||||||||||||||
Sbjct: 51 caataattattattattattt 31


>Contig-U12378-1 (Contig-U12378-1Q) /CSM_Contig/Contig-U12378-1Q.Seq.d
Length = 972

Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Minus


Query: 54 aataattattattattattt 73
||||||||||||||||||||
Sbjct: 903 aataattattattattattt 884


Score = 32.2 bits (16), Expect = 0.25
Identities = 16/16 (100%)
Strand = Plus / Minus


Query: 58 attattattattattt 73
||||||||||||||||
Sbjct: 556 attattattattattt 541


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,541
Number of Sequences: 6905
Number of extensions: 22541
Number of successful extensions: 15250
Number of sequences better than 10.0: 1938
length of query: 234
length of database: 5,674,871
effective HSP length: 15
effective length of query: 219
effective length of database: 5,571,296
effective search space: 1220113824
effective search space used: 1220113824
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7.12
Homology vs DNA
Query= Contig-U05123-1 (Contig-U05123-1Q) /CSM_Contig/Contig-U05123-1Q.Seq.d
(234 letters)

Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C92847) Dictyostelium discoideum slug cDNA, clone SSF470. 180 6e-79 2
(AC093663) Homo sapiens BAC clone RP11-477G18 from 4, comple... 60 4e-05 1
(AC012117) Homo sapiens chromosome 4 clone RP11-362G23 map 4... 60 4e-05 1
(AM465516) Vitis vinifera contig VV78X130101.4, whole genome... 42 4e-04 3
(CT733056) Danio rerio EST, clone ZF_mu_292k07 5'. 54 0.002 1
(AC078955) Homo sapiens 12 BAC RP11-543H12 (Roswell Park Can... 52 0.007 3
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 38 0.008 4
(AC171688) Bos taurus clone CH240-138J7, *** SEQUENCING IN P... 52 0.009 1
(AC145502) Canis lupus familiaris clone RP81-204N10, WORKING... 44 0.014 7
(EV433004) 210894376 NVP Nasonia vitripennis cDNA clone 193C... 36 0.014 3
(EV433698) 211398934 NVP Nasonia vitripennis cDNA clone 242C... 36 0.015 3
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 38 0.020 4
(AE014186) Plasmodium falciparum 3D7 chromosome 11, complete... 40 0.021 2
(BX897657) Zebrafish DNA sequence from clone DKEYP-84C2. 38 0.024 2
(BX682529) Zebrafish DNA sequence from clone CH211-194P13 in... 34 0.024 2
(BX571967) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 0.024 2
(CR450713) Zebrafish DNA sequence from clone DKEY-264H9 in l... 38 0.024 2
(CW700334) AIAA-aab68d11.g1 Ancylostoma caninum whole genome... 36 0.030 2
(EB923195) 12409716 ZF31 Danio rerio cDNA clone 3277575, mRN... 38 0.030 2
(AC213090) Populus trichocarpa clone POP118-O19, complete se... 38 0.031 6
(CR352324) Zebrafish DNA sequence from clone CH211-218L14 in... 50 0.037 1
(BX649281) Zebrafish DNA sequence from clone CH211-210H14 in... 50 0.037 1
(FP312855) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.037 1
(BX957225) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 50 0.037 1
(AC181667) Strongylocentrotus purpuratus clone R3-10B15, WOR... 50 0.037 1
(AC181154) Strongylocentrotus purpuratus clone R3-3037P06, W... 50 0.037 1
(FG354679) TpNBL007419 Trichinella pseudospiralis new born l... 50 0.037 1
(EY331123) CAWY3962.rev CAWY Helobdella robusta Subtracted E... 50 0.037 1
(AM452891) Vitis vinifera contig VV78X090831.5, whole genome... 36 0.047 3
(CU633814) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.049 7
(AC137874) Mus musculus clone RP23-58F21, WORKING DRAFT SEQU... 38 0.053 4
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 36 0.059 6
(AC145297) Mus musculus BAC clone RP24-196O7 from chromosome... 38 0.060 5
(EG347260) SAAH-aaa75d06.b1 Agen 0058 Schmidtea mediterranea... 40 0.069 2
(EG347122) SAAH-aaa74e05.b1 Agen 0058 Schmidtea mediterranea... 40 0.070 2
(BX897738) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.071 5
(EG405298) SAAH-aab95h07.b1 Agen 0058 Schmidtea mediterranea... 40 0.072 2
(EG407985) SAAH-aac52h07.b1 Agen 0058 Schmidtea mediterranea... 40 0.074 2
(CT009763) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.077 4
(BX936391) Zebrafish DNA sequence from clone CH211-114A22 in... 38 0.081 3
(EB952290) 9733244 ZF35 Danio rerio cDNA clone 3425704, mRNA... 38 0.082 2
(EV481402) Fc_nor_48A10_M13F Folsomia candida normalized cDN... 34 0.089 3
(CR394571) Zebrafish DNA sequence from clone CH211-180M12 in... 38 0.090 2
(EG404537) SAAH-aab87a06.b1 Agen 0058 Schmidtea mediterranea... 40 0.094 2
(EG351032) SAAH-aad15f10.b1 Agen 0058 Schmidtea mediterranea... 40 0.096 2
(EG406958) SAAH-aac36f11.b1 Agen 0058 Schmidtea mediterranea... 40 0.098 2
(EG343862) SAAH-aad28h01.b1 Agen 0058 Schmidtea mediterranea... 40 0.099 2
(EG407479) SAAH-aac46g05.b1 Agen 0058 Schmidtea mediterranea... 40 0.10 2
(EG350615) SAAH-aad13d04.b1 Agen 0058 Schmidtea mediterranea... 40 0.10 2
(EG408197) SAAH-aac55d08.b1 Agen 0058 Schmidtea mediterranea... 40 0.10 2
(EG409003) SAAH-aaa27g06.b1 Agen 0058 Schmidtea mediterranea... 40 0.10 2
(EG417834) SAAH-aab65f10.b1 Agen 0058 Schmidtea mediterranea... 40 0.11 2
(EG412810) SAAH-aaa99e05.b1 Agen 0058 Schmidtea mediterranea... 40 0.11 2
(EE673608) SAAH-aab87a06.g1 Agen 0058 Schmidtea mediterranea... 40 0.11 2
(EG342535) SAAH-aab30b01.b1 Agen 0058 Schmidtea mediterranea... 40 0.11 2
(EG412903) SAAH-aab00e02.b1 Agen 0058 Schmidtea mediterranea... 40 0.11 2
(EG406947) SAAH-aac36e12.b1 Agen 0058 Schmidtea mediterranea... 40 0.11 2
(AC117080) Dictyostelium discoideum chromosome 2 map complem... 36 0.11 4
(EG350281) SAAH-aab83g11.b1 Agen 0058 Schmidtea mediterranea... 40 0.11 2
(EG351033) SAAH-aad15f10.g1 Agen 0058 Schmidtea mediterranea... 40 0.11 2
(EG411652) SAAH-aaa06b09.b1 Agen 0058 Schmidtea mediterranea... 40 0.11 2
(EE667876) SAAH-aab99e08.g1 Agen 0058 Schmidtea mediterranea... 40 0.11 2
(EG343864) SAAH-aad28h01.g1 Agen 0058 Schmidtea mediterranea... 40 0.12 2
(AC184595) Strongylocentrotus purpuratus clone R3-3110B2, WO... 36 0.12 6
(AY068640) Schmidtea mediterranea clone HB.5.11f unknown mRN... 40 0.13 2
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 34 0.14 4
(CT573414) Zebrafish DNA sequence from clone DKEYP-105G12 in... 48 0.15 1
(CR628323) Zebrafish DNA sequence from clone DKEY-36G24 in l... 48 0.15 1
(BX572076) Zebrafish DNA sequence from clone DKEY-69N5 in li... 48 0.15 1
(AL929016) Zebrafish DNA sequence from clone DKEY-24J9 in li... 48 0.15 1
(AL844152) Zebrafish DNA sequence from clone DKEY-37L7 in li... 48 0.15 1
(AC213494) Populus trichocarpa clone POP025-N11, complete se... 48 0.15 1
(AC162470) Bos taurus clone CH240-121B16, WORKING DRAFT SEQU... 48 0.15 1
(CU694637) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.15 1
(CU468694) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.15 1
(CT573296) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.15 1
(CR762388) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 48 0.15 1
(FK751374) av02056m17r1.1 Symbiotic sea anemone (Anemonia vi... 48 0.15 1
(AP003515) Clostridium perfringens str. 13 plasmid pCP13 DNA... 46 0.15 5
(AC175862) Strongylocentrotus purpuratus clone R3-3042B10, W... 32 0.17 5
(BX537110) Zebrafish DNA sequence from clone CH211-205J18 in... 38 0.17 5
(AC116925) Dictyostelium discoideum chromosome 2 map 4189423... 32 0.17 5
(CU856475) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 0.18 5
(BX219357) Danio rerio genomic clone DKEY-50H10, genomic sur... 38 0.19 3
(AL844503) Plasmodium falciparum 3D7 chromosome 4. 40 0.19 4
(EV426905) 210766455 NVP Nasonia vitripennis cDNA clone 202I... 32 0.21 3
(EV425721) 210748742 NVP Nasonia vitripennis cDNA clone 212I... 32 0.21 3
(BX294117) Zebrafish DNA sequence from clone CH211-270F13 in... 38 0.22 2
(BX901907) Zebrafish DNA sequence from clone DKEY-22H13 in l... 36 0.23 4
(AC172741) Medicago truncatula chromosome 2 BAC clone mte1-8... 40 0.24 5
(CU463948) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 0.24 2
(BX511215) Zebrafish DNA sequence from clone CH211-66C13 in ... 36 0.24 3
(AY220132) Chrysomya albiceps isolate B mitochondrial 12S ri... 32 0.25 3
(CU076052) Zebrafish DNA sequence from clone CH73-167H5 in l... 38 0.26 3
(AL473062) T. brucei sheared genomic DNA clone 151f11, rever... 38 0.26 2
(FE746469) CAYC3726.g1 CAYC Petrolisthes cinctipes heart, ne... 44 0.26 2
(AY955840) Paracoccidioides brasiliensis strain Pb18 mitocho... 38 0.27 3
(FP102895) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.27 7
(FD452362) EGGAH10TF Haematobia irritans eggs Haematobia irr... 36 0.29 3
(FE746625) CAYC3832.g1 CAYC Petrolisthes cinctipes heart, ne... 44 0.29 2
(BX234563) Danio rerio genomic clone DKEY-253C15, genomic su... 38 0.30 2
(BX510992) Zebrafish DNA sequence from clone DKEYP-93H6 in l... 38 0.31 4
(AL844507) Plasmodium falciparum 3D7 chromosome 8. 38 0.31 3
(AC127417) Mus musculus BAC clone RP23-459M2 from chromosome... 38 0.33 2
(CR376739) Zebrafish DNA sequence from clone CH211-44M2 in l... 38 0.33 2
(BX537341) Zebrafish DNA sequence from clone CH211-103C12 in... 38 0.33 2
(AL935289) Zebrafish DNA sequence from clone CH211-232C12. 38 0.33 2
(AC109783) Mus musculus clone RP23-121F10, WORKING DRAFT SEQ... 38 0.33 2
(CU929240) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 0.33 2
(CU915765) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.34 2
(EY330884) CAWY3796.rev CAWY Helobdella robusta Subtracted E... 38 0.34 2
(CU469577) Zebrafish DNA sequence from clone CH211-132I7 in ... 36 0.34 2
(CR790381) Zebrafish DNA sequence from clone DKEY-202K24 in ... 38 0.35 6
(DX861293) ZMMBLj0011E20.f ZMMBLj Zea mays genomic clone ZMM... 38 0.36 2
(EV426118) 210755011 NVP Nasonia vitripennis cDNA clone 212O... 38 0.37 2
(DN805474) 76948146 Sea Urchin primary mesenchyme cell cDNA ... 40 0.37 2
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete... 42 0.38 3
(EB500550) 1099435293338 12-DrosW-norm-1P5Kb Drosophila will... 42 0.38 2
(CU570791) Zebrafish DNA sequence from clone CH73-39G20 in l... 38 0.38 4
(EV431073) 210805376 NVP Nasonia vitripennis cDNA clone 222A... 30 0.38 3
(AC116987) Dictyostelium discoideum chromosome 2 map 3527441... 32 0.39 6
(AL929188) Zebrafish DNA sequence from clone CH211-273O6 in ... 44 0.40 5
(BX230411) Danio rerio genomic clone DKEY-57J7, genomic surv... 38 0.40 2
(CT591720) Danio rerio EST, clone ZF_mu_28p18 3'. 38 0.41 2
(DU444797) 1098421136775 CHORI-243 Ovis aries genomic clone ... 32 0.42 2
(ED743634) GM_WBb0106M02.r GM_WBb Glycine max genomic clone ... 32 0.42 2
(BX005124) Zebrafish DNA sequence from clone CH211-284A16 in... 38 0.43 4
(CA894936) B0188G09-5N NIA Mouse Neural Stem Cell (Different... 38 0.43 2
(GE010541) 454GmaGlobSeed753189 Soybean Seeds Containing Glo... 40 0.43 2
(EY354830) CAWZ3468.rev CAWZ Helobdella robusta Primary Late... 36 0.44 2
(AC021639) Drosophila melanogaster, chromosome X, region 12E... 40 0.45 6
(BX897661) Zebrafish DNA sequence from clone DKEY-261N7 in l... 38 0.45 5
(FH605528) CHO_OF4926xh04r1.ab1 CHO_OF4 Nicotiana tabacum ge... 36 0.46 2
(ED999563) MUGQ_CH252P168C22Sp6_CN214_093 CHORI-252 Vervet M... 40 0.46 2
(BX324232) Zebrafish DNA sequence from clone DKEY-220B14 in ... 38 0.47 4
(GD959943) 454GmaGlobSeed702592 Soybean Seeds Containing Glo... 40 0.49 2
(FK459168) 454GmaGlobSeed193800 Soybean Seeds Containing Glo... 40 0.49 2
(AL844509) Plasmodium falciparum 3D7 chromosome 13. 40 0.49 4
(AC215363) Solanum lycopersicum chromosome 2 clone C02HBa003... 32 0.50 6
(EY385420) CAXA5683.fwd CAXA Helobdella robusta Subtracted L... 38 0.50 2
(BX088559) Zebrafish DNA sequence from clone DKEY-238P16 in ... 40 0.51 4
(AC127464) Ornithorhynchus anatinus clone OA_Bb-383O11, comp... 36 0.52 4
(BX005067) Zebrafish DNA sequence from clone CH211-182K2 in ... 38 0.53 4
(CL129731) ISB1-97C10_Sp6.1 ISB1 Xenopus (Silurana) tropical... 38 0.55 2
(AC209181) Populus trichocarpa clone ACSB1521-K16, complete ... 34 0.57 4
(AM474008) Vitis vinifera contig VV78X064218.12, whole genom... 42 0.57 2
(AM428548) Vitis vinifera contig VV78X045093.9, whole genome... 34 0.57 3
(FP102975) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.58 3
(CR936238) Zebrafish DNA sequence from clone CH211-154E13 in... 46 0.58 1
(AC190242) Gallus gallus BAC clone CH261-74N2 from chromosom... 46 0.58 1
(AC206569) Pongo abelii BAC clone CH276-323M15 from chromoso... 46 0.58 1
(AC093573) Pan troglodytes clone rp43-32j20, complete sequence. 46 0.58 1
(AC231989) Homo sapiens FOSMID clone ABC7-40658800E17 from c... 46 0.58 1
(BX890606) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 0.58 1
(AC217565) Pongo abelii chromosome 16 clone CH276-258K20, WO... 46 0.58 1
(AC212679) Pongo abelii chromosome 16 clone CH276-337O9, WOR... 46 0.58 1
(AC209624) Zea mays chromosome unknown clone CH201-134E2; ZM... 46 0.58 1
(AC181473) Strongylocentrotus purpuratus clone R3-51H1, WORK... 46 0.58 1
(AM685132) Entamoeba terrapinae GSS, clone terra023c08.p1k. 46 0.58 1
(EJ295191) 1095388031880 Global-Ocean-Sampling_GS-27-01-01-1... 46 0.58 1
(DE442003) Bombyx mori genomic DNA, Fosmid clone:GBMFno31_a2... 46 0.58 1
(BZ739541) OGEDM68TC ZM_0.7_1.5_KB Zea mays genomic clone ZM... 46 0.58 1
(DB872379) Lipochromis sp. 'matumbi hunter' cDNA clone:hm770... 46 0.58 1
(BE539010) 601059728F1 NIH_MGC_10 Homo sapiens cDNA clone IM... 46 0.58 1
(EY374313) CAXA15011.fwd CAXA Helobdella robusta Subtracted ... 46 0.58 1
(EY356201) CAWZ4227.fwd CAWZ Helobdella robusta Primary Late... 46 0.58 1
(EI354920) GM_WBc0105L17.f GM_WBc Glycine max genomic clone ... 38 0.63 3
(AC181517) Strongylocentrotus purpuratus clone R3-1111B8, WO... 38 0.67 6
(CT654955) Danio rerio EST, clone ZF_mu_6c09 3'. 38 0.68 3
(AM438665) Vitis vinifera contig VV78X190607.4, whole genome... 30 0.68 5
(BD460337) Diagnosis of Diseases Associated with Cell Cycle. 32 0.69 3
(BD452259) Diagnosis of Diseases Associated with Cell Cycle. 32 0.69 3
(AX348652) Sequence 110 from Patent WO0202807. 32 0.69 3
(AX344261) Sequence 108 from Patent WO0200926. 32 0.69 3
(AX251873) Sequence 134 from Patent WO0168911. 32 0.69 3
(AM433280) Vitis vinifera contig VV78X094736.6, whole genome... 36 0.69 3
(DE625539) Bombyx mori genomic DNA, Fosmid clone:GBMFno367_b... 40 0.71 2
(AM424920) Vitis vinifera contig VV78X051922.10, whole genom... 38 0.71 2
(AL133163) Human chromosome 14 DNA sequence BAC R-561B11 of ... 40 0.72 4
(DE429070) Bombyx mori genomic DNA, Fosmid clone:GBMFno13_c2... 36 0.72 2
(CU694458) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 42 0.74 3
(FP102805) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.75 2
(CU462910) Zebrafish DNA sequence from clone CH73-123I13 in ... 36 0.77 3
(CX540233) s13dNF63E10GS082_463738 Germinating Seed Medicago... 40 0.78 2
(AC207160) Ornithorhynchus anatinus clone OA_Bb-543A22, WORK... 38 0.79 3
(CR854897) Zebrafish DNA sequence from clone DKEY-121N8 in l... 34 0.86 7
(AC158427) Ornithorhynchus anatinus clone OA_Bb-243F1, WORKI... 38 0.91 5
(AL844505) Plasmodium falciparum 3D7 chromosome 6. 38 0.91 4
(AC141679) Apis mellifera clone CH224-55I23, *** SEQUENCING ... 32 1.0 5
(BJ343168) Dictyostelium discoideum cDNA clone:dda22a11, 3' ... 36 1.0 2
(AL929131) Zebrafish DNA sequence from clone CH211-286O17. 38 1.0 7
(AL844506) Plasmodium falciparum 3D7 chromosome 7. 38 1.1 4
(AM430344) Vitis vinifera contig VV78X008535.17, whole genom... 38 1.1 2
(AC021109) Homo sapiens chromosome 3 clone RP11-235K4, WORKI... 44 1.1 3
(FN373475) Schistosoma mansoni genome sequence supercontig S... 38 1.1 2
(EY391224) CAXA915.rev CAXA Helobdella robusta Subtracted La... 36 1.2 3
(AM431347) Vitis vinifera contig VV78X031429.3, whole genome... 38 1.2 2
(FM992690) Candida dubliniensis CD36 chromosome 3, complete ... 38 1.2 5
(AC198153) Nomascus leucogenys BAC clone CH271-156E13 from c... 42 1.2 3
(FH030369) CHO_OF3011xj07r1.ab1 CHO_OF3 Nicotiana tabacum ge... 38 1.2 2
(AC178319) Strongylocentrotus purpuratus clone R3-3101L22, W... 32 1.2 2
(BX613853) Anopheles gambiae EST, clone AGAB448TR. 38 1.2 2
(CR354596) Zebrafish DNA sequence from clone CH211-117K14 in... 34 1.2 2
(EY355459) CAWZ3833.fwd CAWZ Helobdella robusta Primary Late... 40 1.2 2
(AC145795) Xenopus (Silurana) tropicalis clone CH216-18M1, c... 32 1.2 2
(BX322565) Zebrafish DNA sequence from clone CH211-262K18 in... 32 1.2 2
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 36 1.2 3
(BX294098) Zebrafish DNA sequence from clone CH211-254P12 in... 32 1.2 2
(AC176475) Strongylocentrotus purpuratus clone R3-3070H9, WO... 32 1.2 2
(AL772396) Zebrafish DNA sequence from clone CH211-253F14. 36 1.2 2
(AL359199) Human DNA sequence from clone RP11-296A20 on chro... 36 1.2 2
(BX294095) Zebrafish DNA sequence from clone CH211-248L17 in... 32 1.2 2
(AC137080) Medicago truncatula chromosome 6 clone mth2-9a7, ... 32 1.2 2
(AC147499) Medicago truncatula chromosome 6 clone mth2-22h5,... 32 1.2 2
(CR339052) Zebrafish DNA sequence from clone CH211-218E6 in ... 34 1.2 2
(EG408898) SAAH-aaa11a08.b1 Agen 0058 Schmidtea mediterranea... 36 1.2 2
(AP009892) Lotus japonicus genomic DNA, clone: LjT24M21, TM2... 34 1.2 2
(BU497758) PfESToab87h07.y1 Plasmodium falciparum 3D7 asexua... 42 1.2 2
(BH769412) BMBAC365F07SP6_PSU Brugia malayi Genomic Bac Libr... 34 1.2 2
(AC009176) Arabidopsis thaliana chromosome III P1 MLP3 genom... 32 1.3 2
(B88587) CpG0142A CpIOWAgDNA1 Cryptosporidium parvum genomic... 34 1.3 2
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI... 36 1.3 7
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 38 1.3 2
(CR450687) Zebrafish DNA sequence from clone CH211-204A13 in... 38 1.3 4
(AC177746) Strongylocentrotus purpuratus clone R3-1008E12, W... 38 1.3 6
(AC148602) Medicago truncatula chromosome 6 clone mth2-108p9... 30 1.3 5
(AL356834) Neurospora crassa DNA linkage group II BAC clone ... 32 1.3 6
(BX218686) Danio rerio genomic clone DKEY-273K20, genomic su... 38 1.3 2
(AC176633) Strongylocentrotus purpuratus clone R3-3080F05, W... 34 1.3 5
(BF637807) NF042D10PL1F1080 Phosphate starved leaf Medicago ... 40 1.4 2
(CV159667) SCARABAEUS7_E04_1_024 Scarabaeus laticollis cDNA ... 30 1.4 3
(FN368264) Schistosoma mansoni genome sequence supercontig S... 38 1.4 3
(BX127283) Danio rerio genomic clone DKEY-72N1, genomic surv... 38 1.4 2
(AM430705) Vitis vinifera contig VV78X148904.2, whole genome... 38 1.4 2
(EY292805) CAWX10761.fwd CAWX Helobdella robusta Primary Ear... 36 1.5 2
(EY316712) CAWX26780.rev CAWX Helobdella robusta Primary Ear... 36 1.5 2
(EI844680) POTHC32TR Solanum tuberosum RHPOTKEY BAC ends Sol... 38 1.5 2
(DD391825) Method and nucleic acids for the improved treatme... 32 1.5 4
(DD391551) Method and nucleic acids for the improved treatme... 32 1.5 4
(DD209182) test. 32 1.5 4
(DD209054) test. 32 1.5 4
(CQ807081) Sequence 531 from Patent WO2004035803. 32 1.5 4
(CQ806807) Sequence 257 from Patent WO2004035803. 32 1.5 4
(BD452774) Diagnosis of Diseases Associated with tumor suppr... 32 1.5 4
(AX826019) Sequence 271 from Patent WO03072821. 32 1.5 4
(AX825891) Sequence 143 from Patent WO03072821. 32 1.5 4
(AX822379) Sequence 271 from Patent EP1340818. 32 1.5 4
(AX822251) Sequence 143 from Patent EP1340818. 32 1.5 4
(AX795859) Sequence 202 from Patent WO03052135. 32 1.5 4
(AX795743) Sequence 86 from Patent WO03052135. 32 1.5 4
(AX767499) Sequence 147 from Patent WO03044226. 32 1.5 4
(AX767423) Sequence 71 from Patent WO03044226. 32 1.5 4
(AX346496) Sequence 1567 from Patent WO0200928. 32 1.5 4
(AX251253) Sequence 221 from Patent WO0168912. 32 1.5 4
(BX511095) Zebrafish DNA sequence from clone CH211-152J23 in... 38 1.5 4
(EX614517) 255387106 Pea aphid whole body normalized full le... 34 1.5 2
(BX511017) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 1.5 4
(EY361641) CAWZ7835.rev CAWZ Helobdella robusta Primary Late... 42 1.5 2
(AU073040) Dictyostelium discoideum slug cDNA, clone SSF770. 34 1.5 2
(AC193906) Pan troglodytes BAC clone CH251-149O9 from chromo... 34 1.5 4
(AC067934) Homo sapiens chromosome 3 clone RP11-680F6 map 3,... 44 1.5 3
(BX928758) Zebrafish DNA sequence from clone DKEY-206M15 in ... 40 1.5 8
(DN859371) naa37h11.y2 Zebrafish whole eye. Unnormalized (na... 38 1.5 2
(EY344083) CAWZ12879.fwd CAWZ Helobdella robusta Primary Lat... 40 1.6 2
(AG515880) Mus musculus molossinus DNA, clone:MSMg01-421D02.... 34 1.6 2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 40 1.6 3
(BM166318) EST568841 PyBS Plasmodium yoelii yoelii cDNA clon... 36 1.6 2
(CJ755408) Ipomoea nil cDNA clone:jmsf46k23, 5' end. 32 1.6 2
(EW967459) LS_12_L15_T7 Headlice composite library with all ... 32 1.6 2
(DV952837) SB03024A2B01.f1 Normalized subtracted Keck-Tagu L... 38 1.6 2
(BX511084) Zebrafish DNA sequence from clone DKEY-265C15 in ... 38 1.6 4
(DL097841) Diagnosis of existing illnesses or that praedispo... 36 1.6 2
(DL097840) Diagnosis of existing illnesses or that praedispo... 36 1.6 2
(DL021206) Diagnosis of existing illnesses or that praedispo... 36 1.6 2
(DL021205) Diagnosis of existing illnesses or that praedispo... 36 1.6 2
(GM633670) Sequence 12192 from Patent EP1942197. 36 1.6 2
(GM633669) Sequence 12191 from Patent EP1942197. 36 1.6 2
(CR382294) Zebrafish DNA sequence from clone CH211-73M21 in ... 36 1.6 3
(EY313695) CAWX25099.rev CAWX Helobdella robusta Primary Ear... 36 1.6 2
(FF306229) 279364633 Pea aphid whole body normalized full le... 34 1.6 2
(FE055033) LV_ES_RA22N13f Litopenaeus vannamei eyestalk cDNA... 32 1.6 2
(AM441691) Vitis vinifera, whole genome shotgun sequence, co... 38 1.6 3
(CR506267) mth4-40L9RM1 BAC end, cultivar Jemalong A17 of Me... 32 1.6 2
(EY355444) CAWZ3823.fwd CAWZ Helobdella robusta Primary Late... 36 1.6 2
(FH886914) OSB_666004xi18f1.ab1 OSB_666 Nicotiana tabacum ge... 38 1.6 2
(GE105781) 454GmaGlobSeed848429 Soybean Seeds Containing Glo... 34 1.6 2
(DT283348) JGI_CAAV10920.rev CAAV Pimephales promelas testis... 34 1.6 2
(CR352297) Zebrafish DNA sequence from clone CH211-165L15 in... 40 1.6 4
(EY339227) CAWY9531.fwd CAWY Helobdella robusta Subtracted E... 36 1.7 2
(EY389636) CAXA7953.fwd CAXA Helobdella robusta Subtracted L... 40 1.7 2
(DV945638) SB03003A1A09.f1 Normalized subtracted Keck-Tagu L... 38 1.7 2
(FE713201) SB03055A1C03.f1 Normalized subtracted Keck-Tagu L... 38 1.7 2
(FH465904) CHO_OF4956xp06r1.ab1 CHO_OF4 Nicotiana tabacum ge... 38 1.7 2
(AC216469) Populus trichocarpa clone POP036-C22, complete se... 40 1.7 4
(EY386014) CAXA5997.fwd CAXA Helobdella robusta Subtracted L... 40 1.7 2
(BX195683) Danio rerio genomic clone DKEY-214O10, genomic su... 36 1.7 2
(GH596985) G1297P532FE16.T0 C. parvum KSU-1 normalized sporo... 34 1.7 2
(DY895575) CeleSEQ15432 Cunninghamella elegans pBluescript (... 34 1.7 2
(EY347575) CAWZ15690.fwd CAWZ Helobdella robusta Primary Lat... 40 1.7 2
(BX207555) Danio rerio genomic clone DKEY-239P5, genomic sur... 38 1.7 2
(EY366100) CAXA10550.fwd CAXA Helobdella robusta Subtracted ... 40 1.7 2
(BX152713) Danio rerio genomic clone DKEY-112G4, genomic sur... 38 1.7 2
(FH574230) CHO_OF4279xn16f1.ab1 CHO_OF4 Nicotiana tabacum ge... 38 1.7 2
(ER937032) AF__Bb0007B23f AF__Bb Aquilegia formosa genomic, ... 34 1.7 3
(EY380707) CAXA3029.fwd CAXA Helobdella robusta Subtracted L... 40 1.8 2
(EY339255) CAWY9555.rev CAWY Helobdella robusta Subtracted E... 36 1.8 2
(EY361642) CAWZ7835.fwd CAWZ Helobdella robusta Primary Late... 42 1.8 2
(EY306828) CAWX20131.fwd CAWX Helobdella robusta Primary Ear... 36 1.8 2
(AC208314) Populus trichocarpa clone JGIACSB17-H15, complete... 32 1.8 5
(EY298417) CAWX13899.fwd CAWX Helobdella robusta Primary Ear... 36 1.8 2
(AC157846) Ornithorhynchus anatinus clone OA_Bb-548F11, WORK... 38 1.8 4
(AC196351) Ornithorhynchus anatinus clone OA_Bb-392G6, WORKI... 36 1.8 3
(BX908774) Zebrafish DNA sequence from clone CH211-103A8 in ... 36 1.8 4
(FI293511) AdH1153-CPY2-G2TF AdH1 Arachis duranensis genomic... 30 1.8 3
(AE001362) Plasmodium falciparum 3D7 chromosome 2, complete ... 40 1.8 3
(BH148936) ENTPH42TF Entamoeba histolytica Sheared DNA Entam... 38 1.8 2
(EF104895) Phytoliriomyza melampyga 28S ribosomal RNA gene, ... 34 1.8 2
(BH089002) RPCI-24-328A10.TVB RPCI-24 Mus musculus genomic c... 38 1.9 2
(AC186451) Microcebus murinus clone CH257-539P21, WORKING DR... 30 1.9 6
(EU746612) Nasonia longicornis strain IV7 NADH dehydrogenase... 32 1.9 4
(CT573155) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 1.9 3
(CT025770) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 1.9 4
(DU036939) 19637 Tomato HindIII BAC Library Solanum lycopers... 36 1.9 2
(AL928878) Zebrafish DNA sequence from clone BUSM1-148B8. 38 1.9 3
(CT796105) Paramecium tetraurelia 5-PRIME EST from clone LK0... 40 1.9 2
(AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18... 36 1.9 6
(AG861468) Oryza sativa Indica Group genomic DNA, BAC end se... 40 1.9 2
(FB668772) Sequence 10 from Patent WO2007137873. 32 1.9 4
(EJ112238) 1092343159494 Global-Ocean-Sampling_GS-27-01-01-1... 38 2.0 2
(EF104897) Phytoliriomyza sp. Plnc 28S ribosomal RNA gene, p... 34 2.0 2
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ... 36 2.0 5
(AC187193) Ornithorhynchus anatinus clone OA_Bb-16G23, WORKI... 38 2.0 3
(AM458288) Vitis vinifera, whole genome shotgun sequence, co... 40 2.0 4
(AC176390) Strongylocentrotus purpuratus clone R3-3048C9, WO... 32 2.0 7
(CR450815) Zebrafish DNA sequence from clone CH211-39F2 in l... 38 2.0 8
(AC146847) Ornithorhynchus anatinus clone OA_Bb-453B17, WORK... 38 2.0 3
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 36 2.0 3
(AM451144) Vitis vinifera contig VV78X024874.2, whole genome... 36 2.0 2
(CT573406) Zebrafish DNA sequence from clone CH73-47D17 in l... 38 2.1 3
(FM992695) Candida dubliniensis CD36 chromosome R, complete ... 38 2.1 5
(AM472753) Vitis vinifera contig VV78X213326.2, whole genome... 36 2.1 2
(DY885138) CeleSEQ331 Cunninghamella elegans pBluescript (Ec... 32 2.1 3
(AL197009) Tetraodon nigroviridis genome survey sequence T7 ... 34 2.2 2
(FM992692) Candida dubliniensis CD36 chromosome 5, complete ... 36 2.2 4
(AL844502) Plasmodium falciparum 3D7 chromosome 3. 38 2.2 3
(AC008093) Drosophila melanogaster, chromosome 3R, region 84... 36 2.3 5
(CU571161) Zebrafish DNA sequence from clone CH73-195J15 in ... 44 2.3 1
(CT573397) Zebrafish DNA sequence from clone DKEY-92N2 in li... 44 2.3 1
(CR931802) Zebrafish DNA sequence from clone CH211-223A10 in... 44 2.3 1
(BX927227) Zebrafish DNA sequence from clone CH211-127D13 in... 44 2.3 1
(BX682556) Zebrafish DNA sequence from clone DKEY-105I19 in ... 44 2.3 1
(BX571698) Zebrafish DNA sequence from clone DKEYP-121E10 in... 44 2.3 1
(BX537104) Zebrafish DNA sequence from clone DKEY-80G18 in l... 44 2.3 1
(BX511211) Zebrafish DNA sequence from clone DKEY-41G3 in li... 44 2.3 1
(AL845320) Zebrafish DNA sequence from clone DKEY-30J19 in l... 44 2.3 1
(AL645726) Mouse DNA sequence from clone RP23-45M23 on chrom... 44 2.3 1
(AC168883) Mus musculus 10 BAC RP23-406F5 (Roswell Park Canc... 44 2.3 1
(AC158620) Mus musculus 10 BAC RP23-288C18 (Roswell Park Can... 44 2.3 1
(AC121943) Mus musculus BAC clone RP24-211F3 from chromosome... 44 2.3 1
(AC191812) Rhesus Macaque BAC CH250-85J15 () complete seque... 44 2.3 1
(AC146447) Pan troglodytes BAC clone RP43-4N6 from chromosom... 44 2.3 1
(EU423572) Echinacea angustifolia isolate 318C-038 cellulose... 44 2.3 1
(AP008217) Oryza sativa (japonica cultivar-group) genomic DN... 44 2.3 1
(AM484093) Vitis vinifera contig VV78X003218.11, whole genom... 44 2.3 1
(AM459990) Vitis vinifera contig VV78X054182.5, whole genome... 44 2.3 1
(AM454894) Vitis vinifera contig VV78X110870.4, whole genome... 44 2.3 1
(AM451995) Vitis vinifera, whole genome shotgun sequence, co... 44 2.3 1
(AC125783) Oryza sativa (japonica cultivar-group) chromosome... 44 2.3 1
(AL929603) Trypanosoma brucei chromosome 1, complete sequence. 44 2.3 1
(AC167699) Reniera sp. JGI-2005 clone JGIBAYC-5H5, complete ... 44 2.3 1
(AC159430) Trypanosoma brucei chromosome 3 clone RPCI93-28C2... 44 2.3 1
(AL645769) Human DNA sequence from clone RP11-513I23 on chro... 44 2.3 1
(AC117387) Homo sapiens 3 BAC RP11-16M17 (Roswell Park Cance... 44 2.3 1
(AC104670) Homo sapiens 3 BAC RP11-680F6 (Roswell Park Cance... 44 2.3 1
(AC097514) Homo sapiens BAC clone RP11-425J20 from 4, comple... 44 2.3 1
(AC007016) Homo sapiens chromosome 4 clone C0478G20 map 4p16... 44 2.3 1
(AC159778) Bos taurus clone CH240-74E9, WORKING DRAFT SEQUEN... 44 2.3 1
(AC158038) Bos taurus clone CH240-114I10, WORKING DRAFT SEQU... 44 2.3 1
(AC152444) Bos taurus clone CH240-3N18, WORKING DRAFT SEQUEN... 44 2.3 1
(AC137316) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 44 2.3 1
(AC130430) Homo sapiens chromosome 3 clone RP11-260J24, *** ... 44 2.3 1
(AC129172) Rattus norvegicus clone CH230-5K16, WORKING DRAFT... 44 2.3 1
(AC126995) Rattus norvegicus clone CH230-86L1, *** SEQUENCIN... 44 2.3 1
(AC098283) Rattus norvegicus clone CH230-1H11, WORKING DRAFT... 44 2.3 1
(AC096436) Rattus norvegicus clone CH230-44E6, *** SEQUENCIN... 44 2.3 1
(CT737380) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 2.3 1
(CR388139) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 2.3 1
(CR388059) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 2.3 1
(CR388025) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 2.3 1
(BX548039) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 2.3 1
(BX255953) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 2.3 1
(AC231074) Bos taurus clone CH240-492A9, WORKING DRAFT SEQUE... 44 2.3 1
(AC219839) Bos taurus clone CH240-320J13, WORKING DRAFT SEQU... 44 2.3 1
(AC196757) Citrus sinensis clone CSRBBa-036P20, WORKING DRAF... 44 2.3 1
(AC196750) Citrus sinensis clone CSRBBa-018A12, WORKING DRAF... 44 2.3 1
(AC184256) Strongylocentrotus purpuratus clone R3-3096C5, WO... 44 2.3 1
(AC180544) Strongylocentrotus purpuratus clone R3-3016J06, W... 44 2.3 1
(AC177630) Strongylocentrotus purpuratus clone R3-1020J6, WO... 44 2.3 1
(AC176722) Strongylocentrotus purpuratus clone R3-3096B22, W... 44 2.3 1
(AC176369) Strongylocentrotus purpuratus clone R3-3048I17, W... 44 2.3 1
(AC175854) Strongylocentrotus purpuratus clone R3-15J14, WOR... 44 2.3 1
(AC170895) Mus musculus chromosome 18 clone RP23-424C1, WORK... 44 2.3 1
(AC166719) Bos taurus clone CH240-184G14, WORKING DRAFT SEQU... 44 2.3 1
(AC016491) Homo sapiens chromosome 3 clone RP11-215G8 map 3,... 44 2.3 1
(AC012219) Homo sapiens chromosome 3 clone RP11-260J24 map 3... 44 2.3 1
(AC009662) Homo sapiens chromosome 4 clone RP11-327I3 map 4,... 44 2.3 1
(AY816172) Schistosoma japonicum SJCHGC02303 protein mRNA, c... 44 2.3 1
(AQ949683) Sheared DNA-48I5.TF Sheared DNA Trypanosoma bruce... 44 2.3 1
(AQ721632) HS_5563_B1_B06_T7A RPCI-11 Human Male BAC Library... 44 2.3 1
(ET864818) CHO_OF322xk14r1.ab1 CHO_OF Nicotiana tabacum geno... 44 2.3 1
(ET371943) S0192O20_SP6 CHORI-214 Salmo salar genomic clone ... 44 2.3 1
(ET350124) S0175B21_T7 CHORI-214 Salmo salar genomic clone S... 44 2.3 1
(ET345628) S0228N20_SP6 CHORI-214 Salmo salar genomic clone ... 44 2.3 1
(ET308527) S0228M20_SP6 CHORI-214 Salmo salar genomic clone ... 44 2.3 1
(ET306478) S0060I07_SP6 CHORI-214 Salmo salar genomic clone ... 44 2.3 1
(AL495596) T. brucei sheared genomic DNA clone 375g02, forwa... 44 2.3 1
(AL459076) T. brucei sheared genomic DNA clone 96f12, forwar... 44 2.3 1
(EJ725660) 1092959497200 Global-Ocean-Sampling_GS-30-02-01-1... 44 2.3 1
(EJ713998) 1092956917420 Global-Ocean-Sampling_GS-30-02-01-1... 44 2.3 1
(ED999948) MUGQ_CH252P161M06T7_CN190_019 CHORI-252 Vervet Mo... 44 2.3 1
(ED032805) SBA032_G08.f Sugar beet BAC library USH20 (Code S... 44 2.3 1
(DX229217) OR_ABa0108M14.r OR_ABa Oryza ridleyi genomic clon... 44 2.3 1
(CW880727) she2g4-50.g_061.ab1 Whole-genome shotgun library ... 44 2.3 1
(CU087032) Equus caballus GSS, BAC clone CH241-183D13, SP6 e... 44 2.3 1
(CT938892) Equus caballus GSS, BAC clone CH241-20J10, SP6 en... 44 2.3 1
(CT938678) Equus caballus GSS, BAC clone CH241-20F8, SP6 end... 44 2.3 1
(CL146350) ISB1-147B15_Sp6.1 ISB1 Xenopus (Silurana) tropica... 44 2.3 1
(CC123820) NDL.79B6.T7 Notre Dame Liverpool Aedes aegypti ge... 44 2.3 1
(BX151319) Danio rerio genomic clone DKEY-116O22, genomic su... 44 2.3 1
(EH460032) FDR103-P00007-DEPE-R_F08 FDR103 Danio rerio cDNA ... 44 2.3 1
(EE203090) b1b21z1.r1 Danio rerio 10am (morning) eye/brain c... 44 2.3 1
(EC424519) PMAO-aab41f08.b1 Lamprey_EST_Embryo Petromyzon ma... 44 2.3 1
(AU281783) Molgula tectiformis mRNA, clone:MT19A1C12T, 3' end. 44 2.3 1
(DC441862) Gryllus bimaculatus mRNA, clone:GB00364-37_C03, 5... 44 2.3 1
(DC057819) Xenopus laevis NBRP cDNA clone:xlk70e04ex, 5' end. 44 2.3 1
(DC024397) Xenopus laevis NBRP cDNA clone:rxlk70e04ex, 3' end. 44 2.3 1
(CV674338) RET7SJ_33B05.T7 Schistosoma japonicum reverse cDN... 44 2.3 1
(CT853296) Oryza sativa Indica Group EST sequence:OSIGCRA201... 44 2.3 1
(CT718703) Danio rerio EST, clone ZF_mu_248p03 3'. 44 2.3 1
(CT703478) Danio rerio EST, clone ZF_mu_175a09 3'. 44 2.3 1
(CT699726) Danio rerio EST, clone ZF_mu_284i17 3'. 44 2.3 1
(CT665884) Danio rerio EST, clone ZF_mu_126i08 3'. 44 2.3 1
(CT661698) Danio rerio EST, clone ZF_mu_123g23 3'. 44 2.3 1
(CT661644) Danio rerio EST, clone ZF_mu_123c05 3'. 44 2.3 1
(CT608523) Danio rerio EST, clone ZF_mu_128o06 5'. 44 2.3 1
(CT601181) Danio rerio EST, clone ZF_mu_82d13 3'. 44 2.3 1
(CT590272) Danio rerio EST, clone ZF_mu_20d05 3'. 44 2.3 1
(CN503860) AGENCOURT_22823476 NIH_ZGC_9 Danio rerio cDNA clo... 44 2.3 1
(CJ428771) Molgula tectiformis cDNA, larva clone:mtlv012k13,... 44 2.3 1
(CJ428332) Molgula tectiformis cDNA, larva clone:mtlv032g10,... 44 2.3 1
(CJ426294) Molgula tectiformis cDNA, larva clone:mtlv026g13,... 44 2.3 1
(CJ425495) Molgula tectiformis cDNA, larva clone:mtlv024b09,... 44 2.3 1
(CJ425416) Molgula tectiformis cDNA, larva clone:mtlv023n18,... 44 2.3 1
(CJ424175) Molgula tectiformis cDNA, larva clone:mtlv020d24,... 44 2.3 1
(CJ420387) Molgula tectiformis cDNA, larva clone:mtlv004e07,... 44 2.3 1
(CJ420164) Molgula tectiformis cDNA, larva clone:mtlv003k03,... 44 2.3 1
(CJ419963) Molgula tectiformis cDNA, larva clone:mtlv003b01,... 44 2.3 1
(CJ404827) Molgula tectiformis cDNA, gonad clone:mtgd021j17,... 44 2.3 1
(CJ403348) Molgula tectiformis cDNA, gonad clone:mtgd007f13,... 44 2.3 1
(CJ392726) Molgula tectiformis cDNA, gonad clone:mtgd007f13,... 44 2.3 1
(CJ387454) Molgula tectiformis cDNA, gastrula/neurula clone:... 44 2.3 1
(CJ386217) Molgula tectiformis cDNA, gastrula/neurula clone:... 44 2.3 1
(CJ384174) Molgula tectiformis cDNA, gastrula/neurula clone:... 44 2.3 1
(CJ381866) Molgula tectiformis cDNA, gastrula/neurula clone:... 44 2.3 1
(CJ381535) Molgula tectiformis cDNA, gastrula/neurula clone:... 44 2.3 1
(CJ379690) Molgula tectiformis cDNA, gastrula/neurula clone:... 44 2.3 1
(CJ378622) Molgula tectiformis cDNA, gastrula/neurula clone:... 44 2.3 1
(CJ377462) Molgula tectiformis cDNA, gastrula/neurula clone:... 44 2.3 1
(CJ356789) Molgula tectiformis cDNA, cleaving embryo clone:m... 44 2.3 1
(CJ342605) Molgula tectiformis cDNA, embryo just before hatc... 44 2.3 1
(CJ342553) Molgula tectiformis cDNA, embryo just before hatc... 44 2.3 1
(CJ340050) Molgula tectiformis cDNA, embryo just before hatc... 44 2.3 1
(CJ337555) Molgula tectiformis cDNA, embryo just before hatc... 44 2.3 1
(CJ330251) Molgula tectiformis cDNA, embryo just before hatc... 44 2.3 1
(BU776326) SJECLG01 SJE Schistosoma japonicum cDNA, mRNA seq... 44 2.3 1
(GR058931) CCIF3143.b1 CCIF Mimulus guttatus IM62 leaves (H)... 44 2.3 1
(FG928365) UCRVU09_CCNT8810_g1 Cowpea UCR 707 Mixed Tissue a... 44 2.3 1
(EY338188) CAWY8855.rev CAWY Helobdella robusta Subtracted E... 44 2.3 1
(EY306688) CAWX20054.rev CAWX Helobdella robusta Primary Ear... 44 2.3 1
(AW019116) fd49h06.x1 Zebrafish WashU MPIMG EST Danio rerio ... 44 2.3 1
(AE014188) Plasmodium falciparum 3D7 chromosome 12, complete... 40 2.3 3
(AL928622) Zebrafish DNA sequence from clone DKEY-31O13. 32 2.3 7
(AM474948) Vitis vinifera, whole genome shotgun sequence, co... 40 2.3 4
(FI285976) AdH1157-CPY2-N16TF AdH1 Arachis duranensis genomi... 30 2.3 3
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 32 2.3 9
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com... 32 2.3 9
(CT027617) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 2.3 4
(AC235128) Glycine max strain Williams 82 clone GM_WBa0048K0... 32 2.4 7
(CU633437) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 2.4 4
(AC213924) Populus trichocarpa clone POP042-A21, complete se... 36 2.4 5
(CU184832) Zebrafish DNA sequence from clone CH211-112D9. 34 2.4 4
(DY885978) CeleSEQ1439 Cunninghamella elegans pBluescript (E... 32 2.4 3
(AC180428) Strongylocentrotus purpuratus clone R3-3103I2, WO... 38 2.5 4
(AC231214) Choloepus hoffmanni clone CH281-384B2, WORKING DR... 38 2.5 3
(AL928672) Zebrafish DNA sequence from clone CH211-136O4 in ... 34 2.5 5
(BX323023) Zebrafish DNA sequence from clone CH211-231I17 Co... 34 2.5 5
(BX195440) Danio rerio genomic clone DKEY-211H17, genomic su... 30 2.6 3
(AL078588) Human DNA sequence from clone RP4-784K2 on chromo... 42 2.6 3
(EV426122) 210757101 NVP Nasonia vitripennis cDNA clone 228C... 30 2.6 3
(EV433955) 211400461 NVP Nasonia vitripennis cDNA clone 231K... 30 2.6 3

>(C92847) Dictyostelium discoideum slug cDNA, clone SSF470.
Length = 235

Score = 180 bits (91), Expect(2) = 6e-79
Identities = 91/91 (100%)
Strand = Plus / Plus


Query: 95 ttatttcaatattattggtcaattaatttaaagtaatattacaacaaaaaatttctcaat 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ttatttcaatattattggtcaattaatttaaagtaatattacaacaaaaaatttctcaat 154


Query: 155 tcaatcatacacacattattattaaaattcc 185
|||||||||||||||||||||||||||||||
Sbjct: 155 tcaatcatacacacattattattaaaattcc 185

Score = 145 bits (73), Expect(2) = 6e-79
Identities = 73/73 (100%)
Strand = Plus / Plus


Query: 1 atagtaatgaagaagaagaaacgaattctggggataattcaaaaaacaatagcaataatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atagtaatgaagaagaagaaacgaattctggggataattcaaaaaacaatagcaataatt 60


Query: 61 attattattattt 73
|||||||||||||
Sbjct: 61 attattattattt 73

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 335,764,078
Number of extensions: 34189605
Number of successful extensions: 15125364
Number of sequences better than 10.0: 1733
Length of query: 234
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 211
Effective length of database: 102,190,702,835
Effective search space: 21562238298185
Effective search space used: 21562238298185
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 8. 1
Homology vs Protein
Query= Contig-U05123-1 (Contig-U05123-1Q) /CSM_Contig/Contig-U05123-1Q.Seq.d
(234 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 131,971,921
Number of extensions: 995637
Number of successful extensions: 821
Number of sequences better than 10.0: 0
Number of HSP's gapped: 821
Number of HSP's successfully gapped: 0
Length of query: 78
Length of database: 1,061,185,681
Length adjustment: 49
Effective length of query: 29
Effective length of database: 901,031,729
Effective search space: 26129920141
Effective search space used: 26129920141
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 27 (15.0 bits)

PSORT

psg: 0.75 gvh: -0.13 alm: 0.71 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: nuclear
16.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: plasma membrane

>> prediction for Contig-U05123-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0