Contig-U05121-1
Contig ID Contig-U05121-1
Contig update 2002. 9.13
Contig sequence
>Contig-U05121-1 (Contig-U05121-1Q) /CSM_Contig/Contig-U05121-1Q.Seq.d
TTAGTAGTATTTATTGCGATTAGATGGAAAATATCACAGCATTCAAATTC
TTTGGTATCAAGAGTTAATATAATTGTATCATTTTATTTAATTGCTTTCT
CATTATCTCAATTACCAACTATTATTAATAGTATTCAAAATTTTTCTGAT
CCTGATAATCCTCAATTCTCATTATTTGCATTTCAATTATTATTACAACC
GCTTCAAGGATTTTTAAATTGTGTAGTTTATGGAATTAATGAAGGATTTA
TTAATCATTATGTTGAATTTTTTGAAAAATACATTTTTAGATGTAGATGT
AGAAAGAGTAGGGAATTAAAAGAAATTGAATCTGATAAAACAAGTTTATT
GGTAGATTATGAAAATAGTGATGATGAAGAAGGTTTTGATGGAATGGATA
AATTAATTATTGATGATTATAATAGAGTTTAAAATTAAAA

Gap no gap
Contig length 440
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4242758
End point 4242318
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U05121
List of clone(s)

est1=SSF449Z,1,441
Translated Amino Acid sequence
LVVFIAIRWKISQHSNSLVSRVNIIVSFYLIAFSLSQLPTIINSIQNFSDPDNPQFSLFA
FQLLLQPLQGFLNCVVYGINEGFINHYVEFFEKYIFRCRCRKSRELKEIESDKTSLLVDY
ENSDDEEGFDGMDKLIIDDYNRV*n*


Translated Amino Acid sequence (All Frames)
Frame A:
LVVFIAIRWKISQHSNSLVSRVNIIVSFYLIAFSLSQLPTIINSIQNFSDPDNPQFSLFA
FQLLLQPLQGFLNCVVYGINEGFINHYVEFFEKYIFRCRCRKSRELKEIESDKTSLLVDY
ENSDDEEGFDGMDKLIIDDYNRV*n*


Frame B:
**yllrldgkyhsiqilwyqeli*lyhfi*llshylnyqlllivfkifliliilnshylh
fnyyynrfkdf*iv*fmelmkdlliimlnflkntfldvdvervgn*kklnlikqvyw*im
kivmmkkvlmewin*llmiiiefkik


Frame C:
ssiycd*menitafkffgiks*ynciilfncfliisitnyy**yskff*s**ssiliici
siiittasrifklcslwn**riy*slc*if*kihf*m*m*ke*gikrn*i**nkfigrl*
k****rrf*wng*iny**l**slklk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05121-1 (Contig-U05121-1Q)
/CSM_Contig/Contig-U05121-1Q.Seq.d
(440 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05121-1 (Contig-U05121-1Q) /CSM_Contig/Conti... 872 0.0
Contig-U12114-1 (Contig-U12114-1Q) /CSM_Contig/Conti... 46 3e-05
Contig-U12147-1 (Contig-U12147-1Q) /CSM_Contig/Conti... 38 0.008
Contig-U11007-1 (Contig-U11007-1Q) /CSM_Contig/Conti... 38 0.008
Contig-U09143-1 (Contig-U09143-1Q) /CSM_Contig/Conti... 38 0.008
Contig-U02855-1 (Contig-U02855-1Q) /CSM_Contig/Conti... 38 0.008
Contig-U13008-1 (Contig-U13008-1Q) /CSM_Contig/Conti... 36 0.030
Contig-U13991-1 (Contig-U13991-1Q) /CSM_Contig/Conti... 34 0.12
Contig-U12790-1 (Contig-U12790-1Q) /CSM_Contig/Conti... 34 0.12
Contig-U12528-1 (Contig-U12528-1Q) /CSM_Contig/Conti... 34 0.12

>Contig-U05121-1 (Contig-U05121-1Q) /CSM_Contig/Contig-U05121-1Q.Seq.d
Length = 440

Score = 872 bits (440), Expect = 0.0
Identities = 440/440 (100%)
Strand = Plus / Plus


Query: 1 ttagtagtatttattgcgattagatggaaaatatcacagcattcaaattctttggtatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttagtagtatttattgcgattagatggaaaatatcacagcattcaaattctttggtatca 60


Query: 61 agagttaatataattgtatcattttatttaattgctttctcattatctcaattaccaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agagttaatataattgtatcattttatttaattgctttctcattatctcaattaccaact 120


Query: 121 attattaatagtattcaaaatttttctgatcctgataatcctcaattctcattatttgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attattaatagtattcaaaatttttctgatcctgataatcctcaattctcattatttgca 180


Query: 181 tttcaattattattacaaccgcttcaaggatttttaaattgtgtagtttatggaattaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttcaattattattacaaccgcttcaaggatttttaaattgtgtagtttatggaattaat 240


Query: 241 gaaggatttattaatcattatgttgaattttttgaaaaatacatttttagatgtagatgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaaggatttattaatcattatgttgaattttttgaaaaatacatttttagatgtagatgt 300


Query: 301 agaaagagtagggaattaaaagaaattgaatctgataaaacaagtttattggtagattat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agaaagagtagggaattaaaagaaattgaatctgataaaacaagtttattggtagattat 360


Query: 361 gaaaatagtgatgatgaagaaggttttgatggaatggataaattaattattgatgattat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaaaatagtgatgatgaagaaggttttgatggaatggataaattaattattgatgattat 420


Query: 421 aatagagtttaaaattaaaa 440
||||||||||||||||||||
Sbjct: 421 aatagagtttaaaattaaaa 440


>Contig-U12114-1 (Contig-U12114-1Q) /CSM_Contig/Contig-U12114-1Q.Seq.d
Length = 2252

Score = 46.1 bits (23), Expect = 3e-05
Identities = 23/23 (100%)
Strand = Plus / Plus


Query: 365 atagtgatgatgaagaaggtttt 387
|||||||||||||||||||||||
Sbjct: 1895 atagtgatgatgaagaaggtttt 1917


>Contig-U12147-1 (Contig-U12147-1Q) /CSM_Contig/Contig-U12147-1Q.Seq.d
Length = 1266

Score = 38.2 bits (19), Expect = 0.008
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 270 ttttgaaaaatacattttt 288
|||||||||||||||||||
Sbjct: 354 ttttgaaaaatacattttt 372


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,582
Number of Sequences: 6905
Number of extensions: 12582
Number of successful extensions: 1348
Number of sequences better than 10.0: 398
length of query: 440
length of database: 5,674,871
effective HSP length: 16
effective length of query: 424
effective length of database: 5,564,391
effective search space: 2359301784
effective search space used: 2359301784
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7.12
Homology vs DNA
Query= Contig-U05121-1 (Contig-U05121-1Q) /CSM_Contig/Contig-U05121-1Q.Seq.d
(440 letters)

Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C92829) Dictyostelium discoideum slug cDNA, clone SSF449. 872 0.0 1
(AY219179) Dictyostelium discoideum putative G protein-coupl... 414 0.0 2
(CR380957) Candida glabrata strain CBS138 chromosome K compl... 58 3e-04 1
(BD061520) Genome DNA of symbiotic bacteria of aphid. 34 4e-04 10
(AR409405) Sequence 1 from patent US 6632935. 34 4e-04 10
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum... 34 4e-04 10
(CP001158) Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisu... 34 4e-04 10
(CP001161) Buchnera aphidicola str. 5A (Acyrthosiphon pisum)... 34 4e-04 10
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 38 0.011 8
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 34 0.013 10
(AM656178) Entamoeba moshkovskii FIC GSS, clone mosh037a05.q1k. 42 0.018 2
(DU687723) Bst020259 lambda03 Boechera stricta genomic clone... 52 0.018 1
(FB509185) Sequence 780 from Patent EP1961827. 42 0.022 2
(FB508949) Sequence 544 from Patent EP1961827. 42 0.022 2
(DL199929) EPIGENETIC METHODS AND NUCLEIC ACIDS FOR THE DETE... 42 0.022 2
(DL199693) EPIGENETIC METHODS AND NUCLEIC ACIDS FOR THE DETE... 42 0.022 2
(CS250637) Sequence 181 from Patent WO2005123945. 42 0.022 2
(CS250555) Sequence 99 from Patent WO2005123945. 42 0.022 2
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 36 0.035 11
(AE017308) Mycoplasma mobile 163K complete genome. 32 0.036 14
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 0.048 12
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 38 0.053 8
(CP000993) Borrelia recurrentis A1, complete genome. 34 0.059 11
(AC126195) Rattus norvegicus clone CH230-66K19, WORKING DRAF... 50 0.073 1
(BH150969) ENTQM70TF Entamoeba histolytica Sheared DNA Entam... 50 0.073 1
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 38 0.083 10
(CS468878) Sequence 69 from Patent EP1748080. 34 0.10 11
(CS468877) Sequence 68 from Patent EP1748080. 34 0.10 11
(CS419355) Sequence 69 from Patent WO2006094836. 34 0.10 11
(CS419354) Sequence 68 from Patent WO2006094836. 34 0.10 11
(CU424431) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.12 5
(CP000881) Hemiselmis andersenii chromosome 1, complete sequ... 34 0.14 9
(AE014185) Plasmodium falciparum 3D7 chromosome 10, complete... 34 0.21 13
(AL844505) Plasmodium falciparum 3D7 chromosome 6. 34 0.24 12
(CR548612) Paramecium tetraurelia macronuclear largest chrom... 30 0.25 15
(AC064868) Homo sapiens BAC clone RP11-473E10 from 2, comple... 30 0.28 8
(AC202361) Medicago truncatula clone mth2-57i21, WORKING DRA... 42 0.29 4
(AM910991) Plasmodium knowlesi strain H chromosome 9, comple... 48 0.29 1
(AC217929) Bos taurus clone CH240-195G21, WORKING DRAFT SEQU... 48 0.29 1
(AC199288) Spermophilus tridecemlineatus clone VMRC20-376A11... 48 0.29 1
(AC175684) Bos taurus clone CH240-195H7, WORKING DRAFT SEQUE... 48 0.29 1
(AM090377) Lutzomyia longipalpis EST clone NSFM-109f01, sequ... 48 0.29 1
(AL049181) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 40 0.34 6
(EJ505096) 1095403680703 Global-Ocean-Sampling_GS-28-01-01-1... 32 0.34 3
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com... 36 0.35 15
(AC111325) Rattus norvegicus clone CH230-242H5, *** SEQUENCI... 42 0.37 3
(AC073438) Homo sapiens chromosome 15 clone RP11-472P3 map 1... 38 0.41 5
(EK422593) 1095515631492 Global-Ocean-Sampling_GS-31-01-01-1... 44 0.42 2
(CP000932) Campylobacter lari RM2100, complete genome. 34 0.42 12
(EK421308) 1095515508324 Global-Ocean-Sampling_GS-31-01-01-1... 44 0.43 2
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co... 36 0.45 12
(AF165818) Guillardia theta nucleomorph chromosome 1, comple... 38 0.47 8
(AC186368) Pan troglodytes chromosome 7 clone CH251-329G12, ... 44 0.49 3
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 32 0.51 9
(AM456750) Vitis vinifera, whole genome shotgun sequence, co... 40 0.53 3
(AC176693) Strongylocentrotus purpuratus clone R3-3088G04, W... 36 0.57 7
(BD323175) Low-adenosine antisense oligonucleotide, its comp... 40 0.60 4
(AC159843) Bos taurus clone CH240-70B2, WORKING DRAFT SEQUEN... 40 0.62 3
(CU463881) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.62 2
(AL844509) Plasmodium falciparum 3D7 chromosome 13. 38 0.66 14
(AL136113) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 0.70 3
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 32 0.73 7
(CU104770) Zebrafish DNA sequence from clone DKEY-176K21 in ... 44 0.75 3
(BX548174) Prochlorococcus marinus MED4 complete genome. 32 0.79 17
(EJ206489) 1092344353405 Global-Ocean-Sampling_GS-27-01-01-1... 34 0.81 2
(AC202574) Medicago truncatula clone mth2-166n10, WORKING DR... 36 0.83 4
(AM465455) Vitis vinifera contig VV78X133505.7, whole genome... 46 0.84 2
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 34 0.85 12
(BB037099) Mus musculus 13 days embryo forelimb cDNA, RIKEN ... 36 0.86 2
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 34 0.95 12
(CU469564) Medicago truncatula chromosome 5 clone mte1-77p13... 42 0.95 5
(CR548633) Zebrafish DNA sequence from clone CH211-202O4 in ... 36 0.97 4
(CP001205) Borrelia burgdorferi ZS7, complete genome. 34 0.98 14
(CR847938) Zebrafish DNA sequence from clone DKEYP-30B3 in l... 36 0.99 5
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete... 34 1.0 11
(AY654900) Kluyveromyces lactis mitochondrion, complete genome. 32 1.0 5
(AC180827) Strongylocentrotus purpuratus clone R3-3071D13, W... 32 1.1 5
(AL162397) Human DNA sequence from clone RP11-86C4 on chromo... 38 1.1 5
(CR762424) Zebrafish DNA sequence from clone RP71-52E8 in li... 46 1.1 1
(BX004885) Zebrafish DNA sequence from clone CH211-103L6. 46 1.1 1
(AL840637) Mouse DNA sequence from clone RP23-113H3 on chrom... 46 1.1 1
(AM440524) Vitis vinifera contig VV78X189016.4, whole genome... 46 1.1 1
(AC152521) Bos taurus clone CH240-13I6, WORKING DRAFT SEQUEN... 46 1.1 1
(AC148630) Callithrix jacchus clone CH259-241J18, WORKING DR... 46 1.1 1
(AC123885) Mus musculus clone RP24-125J18, WORKING DRAFT SEQ... 46 1.1 1
(AC110338) Rattus norvegicus clone CH230-142G17, *** SEQUENC... 46 1.1 1
(CU915685) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.1 1
(AC219865) Bos taurus clone CH240-319J20, WORKING DRAFT SEQU... 46 1.1 1
(AC172079) Bos taurus clone CH240-279C2, WORKING DRAFT SEQUE... 46 1.1 1
(ER326613) 1092344216022 Global-Ocean-Sampling_GS-34-01-01-1... 46 1.1 1
(DH561240) Rattus norvegicus DNA, BAC clone: RNB1-073F12, 5'... 46 1.1 1
(DH088395) Oryzias latipes Fosmid clone:GOLWFno167_m10, forw... 46 1.1 1
(CT306014) Sus scrofa genomic clone CH242-369K17, genomic su... 46 1.1 1
(EB486377) 1099341195647 12-DrosW-norm-1P5Kb Drosophila will... 46 1.1 1
(BW643500) Dugesia ryukyuensis mRNA, clone: Dr_sW_027_I20, 5... 46 1.1 1
(BW643221) Dugesia ryukyuensis mRNA, clone: Dr_sW_026_L11, 5... 46 1.1 1
(BJ438326) Dictyostelium discoideum cDNA clone:ddv37h15, 3' ... 46 1.1 1
(BJ408213) Dictyostelium discoideum cDNA clone:dds45h01, 3' ... 46 1.1 1
(BE225327) MD0106 Meloidogyne incognita J2 (#MD99-1) Meloido... 46 1.1 1
(AC169491) Loxodonta africana clone VMRC15-486H20, WORKING D... 36 1.2 4
(AC006586) Arabidopsis thaliana chromosome 2 clone F7B19 map... 40 1.2 3
(AC165591) Bos taurus clone CH240-169M16, WORKING DRAFT SEQU... 40 1.2 4
(AC022526) Homo sapiens chromosome 8 clone RP11-447G11, WORK... 34 1.3 7
(EH639020) EST10128 LK04 Laupala kohalensis cDNA clone 10610... 36 1.3 2
(AC179738) Strongylocentrotus purpuratus clone R3-1018J07, W... 42 1.5 3
(BD323171) Low-adenosine antisense oligonucleotide, its comp... 40 1.5 3
(D16583) Homo sapiens gene for L-histidine decarboxylase, co... 40 1.5 3
(AC190953) Zea mays chromosome 6 clone CH201-479P18; ZMMBBc0... 36 1.6 4
(AC018902) Homo sapiens chromosome 15 clone RP11-327C2 map 1... 38 1.6 4
(AC095556) Rattus norvegicus clone CH230-8C14, *** SEQUENCIN... 38 1.6 4
(AC179212) Strongylocentrotus purpuratus clone R3-41A19, WOR... 40 1.6 3
(AC190363) Atelerix albiventris clone LB4-307O5, complete se... 36 1.6 6
(CX754746) AGENCOURT_40994534 NIH_MGC_279 Homo sapiens cDNA ... 34 1.6 2
(AC146775) Medicago truncatula clone mth2-95g14, complete se... 36 1.7 5
(AC179841) Strongylocentrotus purpuratus clone R3-1007P15, W... 36 1.8 4
(BH137417) ENTNB88TR Entamoeba histolytica Sheared DNA Entam... 42 1.8 2
(FP236211) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 1.9 5
(AM473309) Vitis vinifera contig VV78X267381.52, whole genom... 38 1.9 3
(CT548036) A BAC library has been constructed from cultivar ... 38 1.9 2
(AL671991) Mouse DNA sequence from clone RP23-343L7 on chrom... 36 2.0 5
(EK289140) 1095462324045 Global-Ocean-Sampling_GS-31-01-01-1... 38 2.1 2
(AC149489) Medicago truncatula chromosome 2 clone mth2-24b4,... 36 2.2 4
(FM992695) Candida dubliniensis CD36 chromosome R, complete ... 36 2.2 13
(AC115541) Rattus norvegicus clone CH230-40C8, *** SEQUENCIN... 40 2.2 5
(AC134643) Rattus norvegicus clone CH230-254O4, *** SEQUENCI... 40 2.3 5
(CU302260) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 2.3 2
(CU062514) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 2.3 2
(BI814289) PfESToaa12g03.y2 Plasmodium falciparum 3D7 asexua... 36 2.3 2
(CT009516) Human DNA sequence *** SEQUENCING CANCELLED *** f... 40 2.3 5
(BU494928) PfESToab69f01.y1 Plasmodium falciparum 3D7 asexua... 36 2.4 2
(AC179479) Strongylocentrotus purpuratus clone R3-1035P17, W... 36 2.4 3
(AC182159) Bos taurus clone CH240-515H6, WORKING DRAFT SEQUE... 38 2.5 3
(BX538350) Cryptosporidium parvum chromosome 6, complete seq... 36 2.6 9
(CS468880) Sequence 71 from Patent EP1748080. 44 2.6 3
(CS419357) Sequence 71 from Patent WO2006094836. 44 2.6 3
(AM644651) Entamoeba moshkovskii FIC GSS, clone mosh013f01.p1k. 38 2.7 2
(CP001080) Sulfurihydrogenibium sp. YO3AOP1, complete genome. 40 2.7 13
(AC006905) Caenorhabditis elegans clone Y74E4, *** SEQUENCIN... 30 2.7 8
(AM445839) Vitis vinifera contig VV78X068239.11, whole genom... 38 2.7 3
(AY225599) Echinococcus granulosus antigen B subunit precurs... 36 2.8 2
(AF329632) Plasmodium falciparum CG1 protein mRNA, partial cds. 36 2.8 2
(AC233664) Medicago truncatula, pooled multiple clones, *** ... 32 2.8 6
(AF323614) Plasmodium falciparum isolate HN/FCC1 CG1 protein... 36 2.9 2
(CR954191) Medicago truncatula chromosome 5 clone mte1-26e13... 42 2.9 3
(AL359273) Human DNA sequence from clone RP11-376N17 on chro... 44 3.0 3
(BF298916) 064PbH10 Pb cDNA #20, Charles Yowell and Jane Car... 34 3.0 2
(AC095004) Rattus norvegicus clone CH230-6K13, *** SEQUENCIN... 38 3.1 5
(AC159465) Pan troglodytes BAC clone CH251-325K10 from chrom... 30 3.2 7
(AC189593) Brassica rapa subsp. pekinensis clone KBrH013M23,... 32 3.4 8
(AM434243) Vitis vinifera contig VV78X064736.11, whole genom... 38 3.4 4
(CR762472) Zebrafish DNA sequence from clone DKEY-75G19 in l... 32 3.4 7
(GC699841) Sequence 15086 from patent US 6812339. 38 3.5 4
(CU459056) Zebrafish DNA sequence from clone CH211-235G8 in ... 42 3.5 2
(AC149495) Medicago truncatula clone mth2-117o14, WORKING DR... 34 3.5 5
(CP000236) Ehrlichia chaffeensis str. Arkansas, complete gen... 30 3.5 14
(AL031772) Human DNA sequence from clone RP1-225E12 on chrom... 36 3.9 5
(AC142051) Rattus norvegicus clone CH230-208C19, WORKING DRA... 38 3.9 2
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 32 4.0 7
(CU466419) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 4.0 5
(AC005140) Plasmodium falciparum chromosome 12 clone PFYACB8... 34 4.0 9
(AC214594) Populus trichocarpa clone POP008-I04, complete se... 34 4.1 6
(FE187629) LV_NC_RA44H04f Litopenaeus vannamei nerve cord cD... 34 4.1 2
(DE515788) Bombyx mori genomic DNA, Fosmid clone:GBMFno133_e... 36 4.2 2
(CU929634) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 4.3 5
(AC199938) Zea mays chromosome 5 clone CH201-154K15; ZMMBBc0... 38 4.3 2
(AC235205) Glycine max strain Williams 82 clone GM_WBb0018F0... 40 4.3 5
(AC021368) Homo sapiens clone RP11-25H22, WORKING DRAFT SEQU... 38 4.3 5
(AL844506) Plasmodium falciparum 3D7 chromosome 7. 32 4.5 17
(BX088577) Mouse DNA sequence from clone RP23-58H16 on chrom... 44 4.5 1
(AC083893) Mus musculus strain C57BL/6J clone rp23-21l18 map... 44 4.5 1
(U03509) Gorilla gorilla urate oxidase pseudogene, exon 2 se... 44 4.5 1
(M69169) Squirrel monkey urate oxidase gene, exon 2. 44 4.5 1
(M69168) Rhesus macaque urate oxidase gene, exon 2. 44 4.5 1
(M69167) Orangutan urate oxidase gene, exon 2. 44 4.5 1
(M69165) Chimpanzee urate oxidase gene, exon 2. 44 4.5 1
(M27694) Baboon urate oxidase mRNA, complete cds. 44 4.5 1
(AC188567) Pan troglodytes BAC clone CH251-627G13 from chrom... 44 4.5 1
(AB074410) Hylobates syndactylus Uox pseudogene for urate ox... 44 4.5 1
(AB074406) Hylobates concolor Uox pseudogene for urate oxidase. 44 4.5 1
(AB074398) Hylobates agilis Uox pseudogene for urate oxidase. 44 4.5 1
(AB074394) Hylobates lar Uox pseudogene for urate oxidase. 44 4.5 1
(AB074390) Aotus trivirgatus Uox gene for urate oxidase, com... 44 4.5 1
(AB074382) Macaca fascicularis Uox gene for urate oxidase, c... 44 4.5 1
(AB074374) Macaca mulatta Uox gene for urate oxidase, comple... 44 4.5 1
(AB074366) Papio hamadryas Uox gene for urate oxidase, compl... 44 4.5 1
(AB074358) Hylobates lar Uox pseudogene for urate oxidase. 44 4.5 1
(AB074350) Pongo pygmaeus Uox pseudogene for urate oxidase. 44 4.5 1
(AB074342) Gorilla gorilla Uox pseudogene for urate oxidase. 44 4.5 1
(AB074334) Pan troglodytes Uox pseudogene for urate oxidase. 44 4.5 1
(FB361140) Sequence 15 from Patent WO2006110761. 44 4.5 1
(FB361135) Sequence 10 from Patent WO2006110761. 44 4.5 1
(FB361134) Sequence 9 from Patent WO2006110761. 44 4.5 1
(FB355580) Sequence 15 from Patent WO2006110819. 44 4.5 1
(FB355575) Sequence 10 from Patent WO2006110819. 44 4.5 1
(FB355574) Sequence 9 from Patent WO2006110819. 44 4.5 1
(DM073971) VARIANT FORMS OF URATE OXIDASE AND USE THEREOF. 44 4.5 1
(DM073970) VARIANT FORMS OF URATE OXIDASE AND USE THEREOF. 44 4.5 1
(DM073969) VARIANT FORMS OF URATE OXIDASE AND USE THEREOF. 44 4.5 1
(DM073962) A VARIANT FORM OF URATE OXIDASE AND USE THEREOF. 44 4.5 1
(DM073961) A VARIANT FORM OF URATE OXIDASE AND USE THEREOF. 44 4.5 1
(DM073960) A VARIANT FORM OF URATE OXIDASE AND USE THEREOF. 44 4.5 1
(DJ336449) Albumin Fusion Proteins. 44 4.5 1
(DJ336448) Albumin Fusion Proteins. 44 4.5 1
(DJ336447) Albumin Fusion Proteins. 44 4.5 1
(DJ336446) Albumin Fusion Proteins. 44 4.5 1
(DJ336445) Albumin Fusion Proteins. 44 4.5 1
(DJ336444) Albumin Fusion Proteins. 44 4.5 1
(DJ336443) Albumin Fusion Proteins. 44 4.5 1
(DJ336442) Albumin Fusion Proteins. 44 4.5 1
(DJ336441) Albumin Fusion Proteins. 44 4.5 1
(DI160129) Albumin Fusion Proteins. 44 4.5 1
(DI159762) Albumin Fusion Proteins. 44 4.5 1
(DI159585) Albumin Fusion Proteins. 44 4.5 1
(DI159540) Albumin Fusion Proteins. 44 4.5 1
(DI159417) Albumin Fusion Proteins. 44 4.5 1
(DI159217) Albumin Fusion Proteins. 44 4.5 1
(DI159183) Albumin Fusion Proteins. 44 4.5 1
(DI159182) Albumin Fusion Proteins. 44 4.5 1
(DI159051) Albumin Fusion Proteins. 44 4.5 1
(DI131102) URATE OXIDASE. 44 4.5 1
(DI128194) URATE OXIDASE. 44 4.5 1
(DI053466) URATE OXIDASE. 44 4.5 1
(DI026054) URATE OXIDASE. 44 4.5 1
(BD248421) Urate oxidase. 44 4.5 1
(BD248420) Urate oxidase. 44 4.5 1
(AX548785) Sequence 70 from Patent WO02061087. 44 4.5 1
(GM037810) Sequence 1 from Patent WO2008052558. 44 4.5 1
(GC702082) Sequence 17327 from patent US 6812339. 44 4.5 1
(GC697305) Sequence 12550 from patent US 6812339. 44 4.5 1
(AX069397) Sequence 61 from Patent WO0102600. 44 4.5 1
(AR917507) Sequence 13 from patent US 7056713. 44 4.5 1
(AR917506) Sequence 12 from patent US 7056713. 44 4.5 1
(AR917505) Sequence 3 from patent US 7056713. 44 4.5 1
(AR917504) Sequence 1 from patent US 7056713. 44 4.5 1
(AR367936) Sequence 61 from patent US 6376210. 44 4.5 1
(M27697) Pig urate oxidase mRNA, complete cds. 44 4.5 1
(U03646) Human urate oxidase pseudogene, exon 2 sequence. 44 4.5 1
(S94095) urate oxidase [human, Genomic, 1243 nt]. 44 4.5 1
(M27696) Human urate oxidase pseudogene, exon 2. 44 4.5 1
(AL355612) Human DNA sequence from clone RP11-343P23 on chro... 44 4.5 1
(AL139383) Human DNA sequence from clone RP11-87G1 on chromo... 44 4.5 1
(AC234585) Homo sapiens FOSMID clone ABC7-42496700G18 from c... 44 4.5 1
(AC124943) Homo sapiens 12 BAC RP11-20E24 (Roswell Park Canc... 44 4.5 1
(AC067982) Homo sapiens chromosome 8, clone RP11-125E23, com... 44 4.5 1
(AC025828) Homo sapiens, clone RP11-13I24, complete sequence. 44 4.5 1
(AC024082) Human Chromosome 7 clone RP11-20M11, complete seq... 44 4.5 1
(AB074326) Homo sapiens Uox pseudogene for urate oxidase. 44 4.5 1
(AC162836) Bos taurus clone CH240-123I9, WORKING DRAFT SEQUE... 44 4.5 1
(AC135588) Rattus norvegicus clone CH230-3O1, *** SEQUENCING... 44 4.5 1
(AC113897) Rattus norvegicus clone CH230-327A19, *** SEQUENC... 44 4.5 1
(AC106697) Rattus norvegicus clone CH230-34I8, *** SEQUENCIN... 44 4.5 1
(AC102989) Rattus norvegicus clone CH230-57J23, *** SEQUENCI... 44 4.5 1
(FP102947) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.5 1
(FJ789639) Brassica rapa subsp. pekinensis, pooled multiple ... 44 4.5 1
(CU915412) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.5 1
(CU693467) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.5 1
(AC094269) Rattus norvegicus clone CH230-3L8, *** SEQUENCING... 44 4.5 1
(AC091446) Rattus norvegicus clone CH230-1O2, *** SEQUENCING... 44 4.5 1
(AC053484) Homo sapiens chromosome 12 clone RP11-20E24, WORK... 44 4.5 1
(AC027606) Homo sapiens chromosome 1 clone RP11-30M11, WORKI... 44 4.5 1
(CU326407) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.5 1
(CT737275) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.5 1
(AC235889) Glycine max strain Williams 82 clone GM_WBc0060N1... 44 4.5 1
(AC230590) Bos taurus clone CH240-504D4, WORKING DRAFT SEQUE... 44 4.5 1
(AC223103) Bos taurus clone CH240-42B20, WORKING DRAFT SEQUE... 44 4.5 1
(AC222766) Bos taurus clone CH240-43B20, WORKING DRAFT SEQUE... 44 4.5 1
(AC220891) Bos taurus clone CH240-341O5, WORKING DRAFT SEQUE... 44 4.5 1
(AC219505) Bos taurus clone CH240-331M21, WORKING DRAFT SEQU... 44 4.5 1
(AC201487) Strongylocentrotus purpuratus clone R3-3063C13, W... 44 4.5 1
(AC198586) Dasypus novemcinctus clone VMRC5-353N9, WORKING D... 44 4.5 1
(AC174918) Bos taurus clone CH240-123I10, WORKING DRAFT SEQU... 44 4.5 1
(AC025374) Homo sapiens chromosome 1 clone RP11-25E12 map 1,... 44 4.5 1
(AC016358) Homo sapiens chromosome 7 clone RP11-671B14 map 7... 44 4.5 1
(BH139339) ENTOG05TR Entamoeba histolytica Sheared DNA Entam... 44 4.5 1
(AZ186299) SP_1006_B2_D07_T7A Strongylocentrotus purpuratus,... 44 4.5 1
(ER976341) MUGQ_CH252P297G20T7_CP470_074 CHORI-252 Vervet Mo... 44 4.5 1
(ER604581) 1093016267578 Global-Ocean-Sampling_GS-36-01-01-2... 44 4.5 1
(ER331733) 1092344267527 Global-Ocean-Sampling_GS-34-01-01-1... 44 4.5 1
(ER286957) 1092343576007 Global-Ocean-Sampling_GS-34-01-01-1... 44 4.5 1
(ER283246) 1092343439946 Global-Ocean-Sampling_GS-34-01-01-1... 44 4.5 1
(EK038914) 1092959494482 Global-Ocean-Sampling_GS-31-01-01-1... 44 4.5 1
(EJ546656) 1092956146860 Global-Ocean-Sampling_GS-29-01-01-1... 44 4.5 1
(EJ529001) 1092955209224 Global-Ocean-Sampling_GS-29-01-01-1... 44 4.5 1
(EJ522498) 1092955154178 Global-Ocean-Sampling_GS-29-01-01-1... 44 4.5 1
(EJ508221) 1095407029480 Global-Ocean-Sampling_GS-28-01-01-1... 44 4.5 1
(EJ467953) 1095403391781 Global-Ocean-Sampling_GS-28-01-01-1... 44 4.5 1
(EJ433841) 1093015269820 Global-Ocean-Sampling_GS-28-01-01-1... 44 4.5 1
(EJ313629) 1095403252549 Global-Ocean-Sampling_GS-27-01-01-1... 44 4.5 1
(DU749290) ASNC991.g2 HF10_10-07-02 uncultured marine microo... 44 4.5 1
(DU714665) pym60h10.b1 HK104 Caenorhabditis briggsae genomic... 44 4.5 1
(DU591338) OO__Ba0085D15.r OO__Ba Oryza officinalis genomic ... 44 4.5 1
(DH686444) Rattus norvegicus DNA, BAC clone: RNB1-241J17, 5'... 44 4.5 1
(DH675295) Rattus norvegicus DNA, BAC clone: RNB1-226J08, 5'... 44 4.5 1
(CZ544183) SRAA-aad54d07.b1 Strongyloides ratti whole genome... 44 4.5 1
(CT192657) Sus scrofa genomic clone PigE-95I18, genomic surv... 44 4.5 1
(CT140312) Sus scrofa genomic clone PigE-141I8, genomic surv... 44 4.5 1
(CR900169) Sus scrofa BES. 44 4.5 1
(CL125713) ISB1-87I13_Sp6.1 ISB1 Xenopus (Silurana) tropical... 44 4.5 1
(CG026536) PGAAB47TF PGAA Carica papaya genomic clone PGAAB4... 44 4.5 1
(CE445981) tigr-gss-dog-17000319076506 Dog Library Canis lup... 44 4.5 1
(CC956578) BOIHJ85TF BO_1.4_1.6_KB_nuc Brassica oleracea gen... 44 4.5 1
(BZ195625) CH230-516O16.TV CHORI-230 Segment 2 Rattus norveg... 44 4.5 1
(DV080712) MGC9.7.1.1.1.C04.R.1 NIH_MGC_331 Homo sapiens cDN... 44 4.5 1
(AV148582) Mus musculus 10-11 day embryo cDNA, partial seque... 44 4.5 1
(DB587600) Halocynthia roretzi cDNA clone:ma329j13, 5' end. 44 4.5 1
(BU096528) tca-1013 tca Trypanosoma carassii cDNA clone 05l2... 44 4.5 1
(BP451955) Sus scrofa mRNA, clone:LVRM10137E09, 5' end, expr... 44 4.5 1
(BP440946) Sus scrofa mRNA, clone:LVR010014A01, 5' end, expr... 44 4.5 1
(BB469425) Mus musculus 12 days embryo eyeball cDNA, RIKEN f... 44 4.5 1
(GO589836) 03-ASAEN3NG-UP-008_F11_24APR2007_085 ASAEN3NG Ave... 44 4.5 1
(GE880766) 1112934253600 BABEVCEREB-C-01-1-7KB Papio anubis ... 44 4.5 1
(GD118647) KS24008F05 KS24 Capsicum annuum cDNA, mRNA sequence. 44 4.5 1
(FE264417) CAZO3864.rev CAZO Naegleria gruberi Flagellate St... 44 4.5 1
(FD602218) susfleck_LV_51_F02 SUSFLECK Liver Sus scrofa cDNA... 44 4.5 1
(FD601336) susfleck_LV_12_E08 SUSFLECK Liver Sus scrofa cDNA... 44 4.5 1
(FD600672) susfleck_LV_2_H10 SUSFLECK Liver Sus scrofa cDNA ... 44 4.5 1
(FD600145) susfleck_LV_49_F09 SUSFLECK Liver Sus scrofa cDNA... 44 4.5 1
(EX363201) GQ03206.SP6_I19 GQ032 - Shoot tip (Normalized lib... 44 4.5 1
(EX362842) GQ03206.B7_I19 GQ032 - Shoot tip (Normalized libr... 44 4.5 1
(EW348278) rplun0137_b17.y1 lun Sus scrofa cDNA 5', mRNA seq... 44 4.5 1
(EW297092) ruio26_n24.y1 kid Sus scrofa cDNA 5', mRNA sequence. 44 4.5 1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 32 4.5 10
(AC234404) Solanum lycopersicum chromosome 7 clone C07HBa007... 40 4.7 2
(AC130168) Rattus norvegicus clone CH230-104B16, *** SEQUENC... 40 4.9 4
(AP005202) Homo sapiens genomic DNA, chromosome 18 clone:CTD... 34 4.9 5
(AC134788) Mus musculus chromosome 1, clone RP24-482A14, com... 40 5.1 4
(CU466512) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 5.2 5
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 32 5.2 17
(CE409427) tigr-gss-dog-17000362262706 Dog Library Canis lup... 34 5.3 2
(AC011218) Homo sapiens clone RP11-8D1, WORKING DRAFT SEQUEN... 34 5.3 5
(AC139283) Homo sapiens chromosome 5 clone RP11-840E23, WORK... 38 5.3 5
(BX663513) Zebrafish DNA sequence from clone DKEY-234F12 in ... 32 5.4 7
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 5.4 10
(M24054) D.discoideum Val-tRNA gene, clone lambda-ValGUU2. 30 5.5 3
(FE100953) LV_HC_RA034N15f Litopenaeus vannamei hemocyte cDN... 34 5.5 2
(EJ633504) 1092966811255 Global-Ocean-Sampling_GS-29-01-01-1... 34 5.6 3
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 36 5.6 6
(DM017624) Detection of human papilloma virus. 38 5.7 3
(DM017623) Detection of human papilloma virus. 38 5.7 3
(AC024467) Homo sapiens clone RP11-495K13, WORKING DRAFT SEQ... 38 5.7 5
(FE178340) LV_NC_RA18K16f Litopenaeus vannamei nerve cord cD... 34 5.8 2
(DU180019) 1098553497889 CHORI-243 Ovis aries genomic clone ... 38 5.8 2
(AL844508) Plasmodium falciparum 3D7 chromosome 9. 34 5.9 17
(ED673435) GM_WBb0002P15.f GM_WBb Glycine max genomic clone ... 36 5.9 2
(FP325137) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 6.0 3
(AC217757) Procavia capensis clone CH280-123J13, WORKING DRA... 36 6.0 5
(ER527713) 1093015717616 Global-Ocean-Sampling_GS-35-01-01-1... 36 6.1 2
(AC108728) Homo sapiens chromosome 3 clone RP11-594C8, WORKI... 34 6.1 5
(AC235596) Procavia capensis clone CH280-221F7, WORKING DRAF... 36 6.1 5
(FE100527) LV_HC_RA033G14f Litopenaeus vannamei hemocyte cDN... 34 6.2 2
(AY950229) Bacillus thuringiensis Cry (cry) gene, complete cds. 36 6.3 2
(AC111566) Rattus norvegicus clone CH230-57O23, *** SEQUENCI... 34 6.3 6
(AL162272) Human DNA sequence from clone RP11-145E8 on chrom... 42 6.4 3
(AF077408) Arabidopsis thaliana BAC T7M24. 42 6.4 3
(AC006281) Plasmodium falciparum chromosome 12 clone PFYACB8... 38 6.4 6
(EJ602739) 1092961208214 Global-Ocean-Sampling_GS-29-01-01-1... 34 6.6 3
(AC223953) Bos taurus clone CH240-453F23, WORKING DRAFT SEQU... 38 6.6 3
(AC062004) Homo sapiens chromosome 8, clone RP11-325O20, com... 34 6.7 7
(CP001357) Brachyspira hyodysenteriae WA1, complete genome. 32 6.7 2
(AC215461) Solanum lycopersicum chromosome 2 clone C02SLe009... 40 6.9 5
(CR936359) Zebrafish DNA sequence from clone CH73-264B7 in l... 34 6.9 6
(CR932962) Medicago truncatula chromosome 5 clone mte1-70c24... 32 7.1 7
(CP000979) Borrelia duttonii Ly plasmid pl165, complete sequ... 32 7.1 7
(CR456683) Zebrafish DNA sequence from clone CH211-39I13 in ... 40 7.1 3
(BX942837) Zebrafish DNA sequence from clone CH211-224B23 in... 42 7.3 4
(AL132980) Arabidopsis thaliana DNA chromosome 3, BAC clone ... 34 7.3 7
(CP000395) Borrelia afzelii PKo, complete genome. 34 7.4 13
(AC189678) Trichinella spiralis BAC clone TS195-47H12 from c... 34 7.4 6
(AC231736) Medicago truncatula chromosome 2 clone mth2-55k7,... 42 7.4 4
(ES400669) MUT02-F11.x1d-t SHGC-MUT Mytilus californianus cD... 38 7.5 2
(AC147290) Pan troglodytes chromosome UNK clone RP43-73N5, *... 36 7.6 4
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 32 7.7 8
(AC210789) Zea mays chromosome 8 clone CH201-221F19; ZMMBBc0... 40 7.7 3
(EU099442) Entamoeba histolytica ERE1 repeat sequence. 42 7.7 2
(AC202221) Acyrthosiphon pisum BAC VMRC38-20-A1 (Benaroya R... 38 7.8 5
(ES402420) MUT02-D22.y1d-s SHGC-MUT Mytilus californianus cD... 38 7.9 2
(AX344555) Sequence 6 from Patent WO0200932. 32 7.9 9
(AC120281) Rattus norvegicus clone CH230-438L23, *** SEQUENC... 38 7.9 3
(CU855868) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 8.0 6
(ES400109) MUT01-N15.y1d-s SHGC-MUT Mytilus californianus cD... 38 8.0 2
(BX950229) Methanococcus maripaludis strain S2, complete seq... 32 8.0 13
(ES404349) MUT02-F11.y1d-s SHGC-MUT Mytilus californianus cD... 38 8.0 2
(ES402369) MUT15-J02.y1d-s SHGC-MUT Mytilus californianus cD... 38 8.1 2
(AC123806) Mus musculus BAC clone RP24-152B7 from 10, comple... 34 8.1 5
(AL384479) Medicago truncatula EST MtBC22D06F1 : T3 end of c... 32 8.1 2
(CU606905) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 8.2 3
(CP000883) Hemiselmis andersenii chromosome 3, complete sequ... 32 8.2 2
(BX470263) Zebrafish DNA sequence from clone DKEY-15P9 in li... 30 8.2 2
(AC172176) Atelerix albiventris clone LB4-359O9, WORKING DRA... 30 8.3 2
(AL844502) Plasmodium falciparum 3D7 chromosome 3. 34 8.5 15
(AC148460) Xenopus (Silurana) tropicalis clone CH216-3L17, c... 40 8.5 4
(ES403550) MUT05-D01.y1d-s SHGC-MUT Mytilus californianus cD... 38 8.5 2
(AC119864) Mus musculus chromosome 18, clone RP23-325I21, co... 36 8.6 4
(AL663108) Mouse DNA sequence from clone RP23-19H23 on chrom... 34 8.6 6
(AC169176) Medicago truncatula chromosome 7 BAC clone mth2-1... 42 8.7 4
(AC154462) Mus musculus BAC clone RP24-165F12 from chromosom... 36 8.8 5
(ES398344) MUT13-K16.y1d-s SHGC-MUT Mytilus californianus cD... 38 8.9 2
(AM449809) Vitis vinifera contig VV78X002703.12, whole genom... 28 8.9 6
(AM440437) Vitis vinifera contig VV78X036603.3, whole genome... 38 9.0 2
(AC091216) Caenorhabditis briggsae cosmid G46G14, complete s... 32 9.0 2
(AL355858) Human DNA sequence from clone RP11-30A6 on chromo... 36 9.0 3
(BX248583) Blochmannia floridanus complete genome. 36 9.0 11
(AE014188) Plasmodium falciparum 3D7 chromosome 12, complete... 32 9.1 18
(AM454460) Vitis vinifera contig VV78X182439.3, whole genome... 38 9.1 2
(AM423616) Vitis vinifera contig VV78X237261.21, whole genom... 42 9.3 2
(CP000976) Borrelia duttonii Ly, complete genome. 34 9.4 12
(EI424510) PV_GBa0014C02.f PV_GBa Phaseolus vulgaris genomic... 36 9.5 2
(AC214459) Zea mays chromosome 4 clone CH201-466F6; ZMMBBc04... 36 9.5 4
(U20861) Caenorhabditis elegans cosmid C28H8, complete seque... 34 9.8 3
(AC221285) Bos taurus clone CH240-402G24, WORKING DRAFT SEQU... 32 9.8 5
(AC017742) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 38 9.8 2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 30 9.8 8
(AP001393) Homo sapiens genomic DNA, chromosome 1 clone:RP11... 36 9.9 4

>(C92829) Dictyostelium discoideum slug cDNA, clone SSF449.
Length = 441

Score = 872 bits (440), Expect = 0.0
Identities = 440/440 (100%)
Strand = Plus / Plus


Query: 1 ttagtagtatttattgcgattagatggaaaatatcacagcattcaaattctttggtatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttagtagtatttattgcgattagatggaaaatatcacagcattcaaattctttggtatca 60


Query: 61 agagttaatataattgtatcattttatttaattgctttctcattatctcaattaccaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agagttaatataattgtatcattttatttaattgctttctcattatctcaattaccaact 120


Query: 121 attattaatagtattcaaaatttttctgatcctgataatcctcaattctcattatttgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attattaatagtattcaaaatttttctgatcctgataatcctcaattctcattatttgca 180


Query: 181 tttcaattattattacaaccgcttcaaggatttttaaattgtgtagtttatggaattaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttcaattattattacaaccgcttcaaggatttttaaattgtgtagtttatggaattaat 240


Query: 241 gaaggatttattaatcattatgttgaattttttgaaaaatacatttttagatgtagatgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaaggatttattaatcattatgttgaattttttgaaaaatacatttttagatgtagatgt 300


Query: 301 agaaagagtagggaattaaaagaaattgaatctgataaaacaagtttattggtagattat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agaaagagtagggaattaaaagaaattgaatctgataaaacaagtttattggtagattat 360


Query: 361 gaaaatagtgatgatgaagaaggttttgatggaatggataaattaattattgatgattat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaaaatagtgatgatgaagaaggttttgatggaatggataaattaattattgatgattat 420


Query: 421 aatagagtttaaaattaaaa 440
||||||||||||||||||||
Sbjct: 421 aatagagtttaaaattaaaa 440

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 766,460,071
Number of extensions: 53923475
Number of successful extensions: 4777778
Number of sequences better than 10.0: 414
Length of query: 440
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 417
Effective length of database: 102,190,702,835
Effective search space: 42613523082195
Effective search space used: 42613523082195
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 8. 1
Homology vs Protein
Query= Contig-U05121-1 (Contig-U05121-1Q) /CSM_Contig/Contig-U05121-1Q.Seq.d
(440 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q54U75) RecName: Full=Cyclic AMP receptor-like protein A; 248 5e-65
AY219179_1(AY219179|pid:none) Dictyostelium discoideum putative ... 234 5e-61
EU637853_1(EU637853|pid:none) Callorhinchus milii neuropeptide Y... 34 1.4
FJ362363_3(FJ362363|pid:none) Caenorhabditis brenneri contig JD1... 34 1.8
CP000061_404(CP000061|pid:none) Aster yellows witches'-broom phy... 33 2.4
EF426472_2(EF426472|pid:none) Paulownia witches'-broom phytoplas... 33 2.4
AB076262_3(AB076262|pid:none) Onion yellows phytoplasma rep, ORF... 33 2.4
AE014188_174(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 33 4.1
AM422018_109(AM422018|pid:none) Candidatus Phytoplasma australie... 32 5.3
CP000764_430(CP000764|pid:none) Bacillus cereus subsp. cytotoxis... 32 5.3
CP000263_194(CP000263|pid:none) Buchnera aphidicola str. Cc (Cin... 32 5.3

>(Q54U75) RecName: Full=Cyclic AMP receptor-like protein A;
Length = 369

Score = 248 bits (633), Expect = 5e-65
Identities = 125/143 (87%), Positives = 125/143 (87%)
Frame = +1

Query: 1 LVVFIAIRWKISQHSNSLVSRVNIIVSFYLIAFSLSQLPTIINSIQNFSDPDNPXXXXXX 180
LVVFIAIRWKISQHSNSLVSRVNIIVSFYLIAFSLSQLPTIINSIQNFSDPDNP
Sbjct: 227 LVVFIAIRWKISQHSNSLVSRVNIIVSFYLIAFSLSQLPTIINSIQNFSDPDNPQFSLFA 286

Query: 181 XXXXXXXXXXXXNCVVYGINEGFINHYVEFFEKYIFRCRCRKSRELKEIESDKTSLLVDY 360
NCVVYGINEGFINHYVEFFEKYIFRCRCRKSRELKEIESDKTSLLVDY
Sbjct: 287 FQLLLQPLQGFLNCVVYGINEGFINHYVEFFEKYIFRCRCRKSRELKEIESDKTSLLVDY 346

Query: 361 ENSDDEEGFDGMDKLIIDDYNRV 429
ENSDDEEGFDGMDKLIIDDYNRV
Sbjct: 347 ENSDDEEGFDGMDKLIIDDYNRV 369

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 535,799,857
Number of extensions: 9397006
Number of successful extensions: 23164
Number of sequences better than 10.0: 11
Number of HSP's gapped: 23123
Number of HSP's successfully gapped: 11
Length of query: 146
Length of database: 1,061,185,681
Length adjustment: 109
Effective length of query: 37
Effective length of database: 704,924,849
Effective search space: 26082219413
Effective search space used: 26082219413
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)

PSORT

psg: 0.71 gvh: 0.59 alm: 0.33 top: 0.53 tms: 0.00 mit: 0.49 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.30 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: mitochondrial
32.0 %: nuclear
4.0 %: cytoskeletal

>> prediction for Contig-U05121-1 is mit

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0