Contig-U05118-1
Contig ID Contig-U05118-1
Contig update 2002. 9.13
Contig sequence
>Contig-U05118-1 (Contig-U05118-1Q) /CSM_Contig/Contig-U05118-1Q.Seq.d
AATTTTTTATTTTTTTATTTTTTTCTTTCATACCTTCATTAAATTAATTG
ACAATTAGTATCATAAAAATAAAATTAAATTAAATAAAATAAAAAATAGA
AAATAAAAAAAAAAAAAAAAATGTCATCAATTTTACATAAAAAAGCACAG
TTTAAAAAACAATTAGAAGATACATTTAAAGACCATCAAGATTTAGTTAA
ATATAGTAAAAATGTTTTACTTTTAAATAGACCCATAGATTTTGGTGTAC
TTTTTATATTAGTATCTTTTATTTTATACTATTTAAAAAATTTCAATACA
TCAGCACTTTCTTTTTTTAGTTTTTTCATTTCATTCATTTTAATTTTACA
TACTATAATTTTAAATTTTAACTTAAAATCAATTACAAGAGTTATTCCAA
CTCAAGATTCAAAAGATAGTTATGAAGATATTATCAATTTAATAGTTAAA
GTAAAATTTGCATTCAGTGATTCATTATCAGAATTGAATAGATTTAGACA
TGTTAATCCAACTAAATTTAATATTCAAACATCAATTGTTTTAGGAGTTT
TAGGTTTTATTGGTATATTTTTCTCTGGATATACAATTATTGTATTGGTT
GTATATTCAACTTTACTTTTACCATACATTTTGTATGGTAAGAAACCACA
AAATACAGGTCAACAATCTCAAGATCTTTTAAATAATATTATTGTTGTAA
TGAAACCAATCATTGAAAATATAATTAAAATTTCACAACAACTTTTTACT
CAAATTTTAGATTTAGCCACAAATAAAAAACAACCATCACCAGGTATTCC
AAATCAAAATTATTCAAATAATAATACTAATAATAATAATAATAATAATA
CTAATACTAATAATAACAATAATAATGGTTATGATAAATCTTAAATAAAG
TTTGATGAAACCTATACATTAAAAATTTAAATTCAATTGGTAATAATATA
AATTCAATTGGTTCAAATATTTCAAATAAAATATCACAACAAATTAATAA
TCATCATCAACAACAAGAAGATGAACAACAAGAAGAAGTTTTTTATGCCG
AAAGCAATTTCACTAAAACCAATAATGGTTATGTTAATCAATCAAATCCA
ATCCTTAAAAAAAGATTTTCGAAATGTAGTAAATTCTAAATAAATAAAAA
AGTAAAACAAAAAAATAAAAAAAAAAAAAATATAAAAATGAAAATTAACA
ATTTTGTCACTAT

Gap no gap
Contig length 1213
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 4824196
End point 4822983
Strand (PLUS/MINUS) MINUS
Number of clones 5
Number of EST 7
Link to clone list U05118
List of clone(s)

est1=SSF436F,1,692
est2=SSG385F,401,880
est3=VSI817Z,517,997
est4=SSJ348E,683,1214
est5=SSF436Z,821,1174
est6=SSG773Z,831,1182
est7=SSG385Z,1084,1214
Translated Amino Acid sequence
nflffyfflsylh*in*qlvs*k*n*ik*nkk*KIKKKKKMSSILHKKAQFKKQLEDTFK
DHQDLVKYSKNVLLLNRPIDFGVLFILVSFILYYLKNFNTSALSFFSFFISFILILHTII
LNFNLKSITRVIPTQDSKDSYEDIINLIVKVKFAFSDSLSELNRFRHVNPTKFNIQTSIV
LGVLGFIGIFFSGYTIIVLVVYSTLLLPYILYGKKPQNTGQQSQDLLNNIIVVMKPIIEN
IIKISQQLFTQILDLATNKKQPSPGIPNQNYSNNNTNNNNNNNTNTNNNNNNGYDKS*ik
fdetytlki*iqlvii*iqlvqifqikyhnkliiiinnkkmnnkkkffmpkaislkpimv
mlinqiqslkkdfrnvvnsk*ikk*nkkikkkki*k*kltilsl


Translated Amino Acid sequence (All Frames)
Frame A:
nflffyfflsylh*in*qlvs*k*n*ik*nkk*KIKKKKKMSSILHKKAQFKKQLEDTFK
DHQDLVKYSKNVLLLNRPIDFGVLFILVSFILYYLKNFNTSALSFFSFFISFILILHTII
LNFNLKSITRVIPTQDSKDSYEDIINLIVKVKFAFSDSLSELNRFRHVNPTKFNIQTSIV
LGVLGFIGIFFSGYTIIVLVVYSTLLLPYILYGKKPQNTGQQSQDLLNNIIVVMKPIIEN
IIKISQQLFTQILDLATNKKQPSPGIPNQNYSNNNTNNNNNNNTNTNNNNNNGYDKS*ik
fdetytlki*iqlvii*iqlvqifqikyhnkliiiinnkkmnnkkkffmpkaislkpimv
mlinqiqslkkdfrnvvnsk*ikk*nkkikkkki*k*kltilsl


Frame B:
ifyffifffhtfiklidn*yhknkiklnkiknrk*kkkkkchqfyikkhslknn*kihlk
tiki*lnivkmfyf*idp*ilvyfly*yllfyti*kisihqhflflvfsfhsf*fyil*f
*ilt*nqlqelfqlkiqkivmkilsi**lk*nlhsvihyqn*idldmliqlnlifkhqlf
*ef*vllvyfsldiqllywlyiqlyfyhtfcmvrnhkiqvnnlkif*iilll**nqslki
*lkfhnnfllkf*i*pqiknnhhqvfqikiiqiiiliiiiiiililiitiimvminlk*s
lmkpih*kfkfnw**ykfnwfkyfk*nittn**sssttrr*ttrrsflcrkqfh*nq*wl
c*siksnp*kkifem**ilnk*ksktkk*kkkkyknen*qfchy


Frame C:
ffiflffsfipsln*ltisiikikln*ik*kienkkkkknvinft*kstv*ktirryi*r
psrfs*i**kcftfk*thrfwctfyisifyfilfkkfqyistfff*ffhfihfnftyynf
kf*lkinyksysnsrfkr*l*ryyqfns*skiciq*fiirie*i*tc*sn*i*ysnincf
rsfrfywyiflwiynycigcifnftftihfvw*ettkyrstisrsfk*yyccnetnh*ky
n*nftttfysnfrfshk*kttitrysksklfk**y*******y*y***q**wl**ilnkv
**nlyiknlnsignninsigsnisnkisqqinnhhqqqedeqqeevfyaesnftktnngy
vnqsnpilkkrfskcskf*inkkvkqknkkkknikmkinnfvt


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05118-1 (Contig-U05118-1Q)
/CSM_Contig/Contig-U05118-1Q.Seq.d
(1213 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05118-1 (Contig-U05118-1Q) /CSM_Contig/Conti... 886 0.0
Contig-U04454-1 (Contig-U04454-1Q) /CSM_Contig/Conti... 50 6e-06
Contig-U11332-1 (Contig-U11332-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U10062-1 (Contig-U10062-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U09429-1 (Contig-U09429-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U14179-1 (Contig-U14179-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U06747-1 (Contig-U06747-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U14704-1 (Contig-U14704-1Q) /CSM_Contig/Conti... 36 0.086
Contig-U14352-1 (Contig-U14352-1Q) /CSM_Contig/Conti... 36 0.086
Contig-U13111-1 (Contig-U13111-1Q) /CSM_Contig/Conti... 36 0.086

>Contig-U05118-1 (Contig-U05118-1Q) /CSM_Contig/Contig-U05118-1Q.Seq.d
Length = 1213

Score = 886 bits (447), Expect = 0.0
Identities = 447/447 (100%)
Strand = Plus / Plus


Query: 370 aacttaaaatcaattacaagagttattccaactcaagattcaaaagatagttatgaagat 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aacttaaaatcaattacaagagttattccaactcaagattcaaaagatagttatgaagat 429


Query: 430 attatcaatttaatagttaaagtaaaatttgcattcagtgattcattatcagaattgaat 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 attatcaatttaatagttaaagtaaaatttgcattcagtgattcattatcagaattgaat 489


Query: 490 agatttagacatgttaatccaactaaatttaatattcaaacatcaattgttttaggagtt 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agatttagacatgttaatccaactaaatttaatattcaaacatcaattgttttaggagtt 549


Query: 550 ttaggttttattggtatatttttctctggatatacaattattgtattggttgtatattca 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ttaggttttattggtatatttttctctggatatacaattattgtattggttgtatattca 609


Query: 610 actttacttttaccatacattttgtatggtaagaaaccacaaaatacaggtcaacaatct 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 actttacttttaccatacattttgtatggtaagaaaccacaaaatacaggtcaacaatct 669


Query: 670 caagatcttttaaataatattattgttgtaatgaaaccaatcattgaaaatataattaaa 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 caagatcttttaaataatattattgttgtaatgaaaccaatcattgaaaatataattaaa 729


Query: 730 atttcacaacaactttttactcaaattttagatttagccacaaataaaaaacaaccatca 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 atttcacaacaactttttactcaaattttagatttagccacaaataaaaaacaaccatca 789


Query: 790 ccaggtattccaaatcaaaattattca 816
|||||||||||||||||||||||||||
Sbjct: 790 ccaggtattccaaatcaaaattattca 816


Score = 369 bits (186), Expect = e-102
Identities = 186/186 (100%)
Strand = Plus / Plus


Query: 122 tgtcatcaattttacataaaaaagcacagtttaaaaaacaattagaagatacatttaaag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tgtcatcaattttacataaaaaagcacagtttaaaaaacaattagaagatacatttaaag 181


Query: 182 accatcaagatttagttaaatatagtaaaaatgttttacttttaaatagacccatagatt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 accatcaagatttagttaaatatagtaaaaatgttttacttttaaatagacccatagatt 241


Query: 242 ttggtgtactttttatattagtatcttttattttatactatttaaaaaatttcaatacat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttggtgtactttttatattagtatcttttattttatactatttaaaaaatttcaatacat 301


Query: 302 cagcac 307
||||||
Sbjct: 302 cagcac 307


Score = 264 bits (133), Expect = 2e-70
Identities = 147/154 (95%)
Strand = Plus / Plus


Query: 983 atcacaacaaattaataatcatcatcaacaacaagaagatgaacaacaagaagaagtttt 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 atcacaacaaattaataatcatcatcaacaacaagaagatgaacaacaagaagaagtttt 1042


Query: 1043 ttatgccgaaagcaatttcactaaaaccaataatggttatgttaatcaatcaaatccaat 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 ttatgccgaaagcaatttcactaaaaccaataatggttatgttaatcaatcaaatccaat 1102


Query: 1103 ccttnnnnnnngattttcgaaatgtagtaaattc 1136
|||| |||||||||||||||||||||||
Sbjct: 1103 ccttaaaaaaagattttcgaaatgtagtaaattc 1136


Score = 85.7 bits (43), Expect = 1e-16
Identities = 43/43 (100%)
Strand = Plus / Plus


Query: 877 ggttatgataaatcttaaataaagtttgatgaaacctatacat 919
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 ggttatgataaatcttaaataaagtttgatgaaacctatacat 919


Score = 77.8 bits (39), Expect = 3e-14
Identities = 39/39 (100%)
Strand = Plus / Plus


Query: 25 ctttcataccttcattaaattaattgacaattagtatca 63
|||||||||||||||||||||||||||||||||||||||
Sbjct: 25 ctttcataccttcattaaattaattgacaattagtatca 63


Score = 38.2 bits (19), Expect = 0.022
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 1195 ttaacaattttgtcactat 1213
|||||||||||||||||||
Sbjct: 1195 ttaacaattttgtcactat 1213


>Contig-U04454-1 (Contig-U04454-1Q) /CSM_Contig/Contig-U04454-1Q.Seq.d
Length = 344

Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus


Query: 1009 aacaacaagaagatgaacaacaagaagaa 1037
|||||||||||| ||||||||||||||||
Sbjct: 157 aacaacaagaaggtgaacaacaagaagaa 185


>Contig-U11332-1 (Contig-U11332-1Q) /CSM_Contig/Contig-U11332-1Q.Seq.d
Length = 3658

Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 996 aataatcatcatcaacaacaa 1016
|||||||||||||||||||||
Sbjct: 77 aataatcatcatcaacaacaa 97


Score = 34.2 bits (17), Expect = 0.34
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 1000 atcatcatcaacaacaa 1016
|||||||||||||||||
Sbjct: 1627 atcatcatcaacaacaa 1643


Score = 32.2 bits (16), Expect = 1.3
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 1000 atcatcatcaacaaca 1015
||||||||||||||||
Sbjct: 1423 atcatcatcaacaaca 1438


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,284
Number of Sequences: 6905
Number of extensions: 22284
Number of successful extensions: 2453
Number of sequences better than 10.0: 336
length of query: 1213
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1197
effective length of database: 5,564,391
effective search space: 6660576027
effective search space used: 6660576027
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7.12
Homology vs DNA
Query= Contig-U05118-1 (Contig-U05118-1Q) /CSM_Contig/Contig-U05118-1Q.Seq.d
(1213 letters)

Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 595 0.0 6
(AU269274) Dictyostelium discoideum vegetative cDNA clone:VS... 577 e-160 1
(AU072929) Dictyostelium discoideum slug cDNA, clone SSF436. 236 1e-72 2
(C90953) Dictyostelium discoideum slug cDNA, clone SSJ348. 196 1e-50 3
(C93002) Dictyostelium discoideum slug cDNA, clone SSF436. 188 4e-43 1
(C89761) Dictyostelium discoideum slug cDNA, clone SSG773. 188 4e-43 1
(C94083) Dictyostelium discoideum slug cDNA, clone SSG385. 54 2e-07 2
(CG821726) SOYAV35TH LargeInsertSoybeanGenLib Glycine max ge... 38 0.003 3
(AC164110) Mus musculus BAC clone RP23-307N19 from chromosom... 54 0.013 1
(AC134596) Mus musculus BAC clone RP23-435C1 from chromosome... 54 0.013 1
(AC096084) Rattus norvegicus clone CH230-16I22, WORKING DRAF... 54 0.013 1
(AG362939) Mus musculus molossinus DNA, clone:MSMg01-164H14.... 54 0.013 1
(FE776470) CCAG8772.b5 CCAG Petrolisthes cinctipes heart, gi... 54 0.013 1
(AC137215) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 52 0.053 1
(AC131193) Rattus norvegicus clone CH230-47D15, *** SEQUENCI... 52 0.053 1
(AC128345) Rattus norvegicus clone CH230-103N20, *** SEQUENC... 52 0.053 1
(AC127072) Rattus norvegicus clone CH230-370B20, *** SEQUENC... 52 0.053 1
(AC126139) Rattus norvegicus clone CH230-104O14, WORKING DRA... 52 0.053 1
(AC118163) Rattus norvegicus clone CH230-394C6, WORKING DRAF... 52 0.053 1
(AC112596) Rattus norvegicus clone CH230-45P12, *** SEQUENCI... 52 0.053 1
(AC095273) Rattus norvegicus clone CH230-11J14, WORKING DRAF... 52 0.053 1
(FM048585) Rattus norvegicus EST, 5'-end sequence, clone etc... 52 0.053 1
(FE838964) CCAG48188.g1 CCAG Petrolisthes cinctipes heart, g... 52 0.053 1
(FE838582) CCAG47948.g1 CCAG Petrolisthes cinctipes heart, g... 52 0.053 1
(FE831367) CCAG43405.g1 CCAG Petrolisthes cinctipes heart, g... 52 0.053 1
(FE773493) CCAG7181.g1 CCAG Petrolisthes cinctipes heart, gi... 52 0.053 1
(FE754741) CAYF3911.g3 CAYF Petrolisthes cinctipes heart, wh... 52 0.053 1
(FE754740) CAYF3911.b3 CAYF Petrolisthes cinctipes heart, wh... 52 0.053 1
(FE753118) CAYF2762.g1 CAYF Petrolisthes cinctipes heart, wh... 52 0.053 1
(AM450368) Vitis vinifera contig VV78X000681.8, whole genome... 38 0.090 3
(CP001080) Sulfurihydrogenibium sp. YO3AOP1, complete genome. 36 0.11 2
(AC235209) Glycine max strain Williams 82 clone GM_WBb0018O2... 38 0.11 9
(AY700145) Polysphondylium pallidum mitochondrion DNA, compl... 34 0.14 6
(CP000727) Clostridium botulinum A str. Hall, complete genome. 48 0.19 18
(EL400092) CFFS11436.b1_H04.ab1 CFF(LMS) safflower Carthamus... 50 0.21 1
(AU072726) Dictyostelium discoideum slug cDNA, clone SSA706. 50 0.21 1
(CU633209) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.30 3
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete... 46 0.35 15
(AM465935) Vitis vinifera contig VV78X120429.4, whole genome... 36 0.40 4
(AC111215) Rattus norvegicus clone CH230-162E6, *** SEQUENCI... 38 0.45 2
(AC112073) Rattus norvegicus clone CH230-360I5, *** SEQUENCI... 34 0.45 2
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 30 0.46 10
(CP000726) Clostridium botulinum A str. ATCC 19397, complete... 48 0.51 17
(AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 48 0.54 17
(BH488852) BOGHG49TF BOGH Brassica oleracea genomic clone BO... 36 0.56 3
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 44 0.65 8
(AC146864) Medicago truncatula chromosome 6 clone mth2-175n2... 34 0.65 7
(AC148289) Medicago truncatula chromosome 7 clone mth2-36p20... 48 0.82 1
(AC157313) Bos taurus clone CH240-67A16, WORKING DRAFT SEQUE... 48 0.82 1
(AC166647) Mus musculus chromosome 3 clone RP23-5I9 map 3, *... 48 0.82 1
(BH161499) ENTRY14TR Entamoeba histolytica Sheared DNA Entam... 48 0.82 1
(AZ670835) ENTIA49TF Entamoeba histolytica Sheared DNA Entam... 48 0.82 1
(CA991271) EST644779 GESD Medicago truncatula cDNA clone GES... 48 0.82 1
(CA991005) EST644513 GESD Medicago truncatula cDNA clone GES... 48 0.82 1
(CA990992) EST644500 GESD Medicago truncatula cDNA clone GES... 48 0.82 1
(CA990797) EST644305 GESD Medicago truncatula cDNA clone GES... 48 0.82 1
(CA990773) EST644281 GESD Medicago truncatula cDNA clone GES... 48 0.82 1
(CA919346) EST637064 MTUS Medicago truncatula cDNA clone MTU... 48 0.82 1
(CA918585) EST642732 GESD Medicago truncatula cDNA clone GES... 48 0.82 1
(CA918584) EST642731 GESD Medicago truncatula cDNA clone GES... 48 0.82 1
(CA859029) EST636284 GLSD Medicago truncatula cDNA clone pGL... 48 0.82 1
(CA858921) EST636176 GLSD Medicago truncatula cDNA clone pGL... 48 0.82 1
(CA858906) EST636161 GLSD Medicago truncatula cDNA clone pGL... 48 0.82 1
(CA858896) EST636151 GLSD Medicago truncatula cDNA clone pGL... 48 0.82 1
(CA858878) EST636133 GLSD Medicago truncatula cDNA clone pGL... 48 0.82 1
(CA858717) EST635972 GLSD Medicago truncatula cDNA clone pGL... 48 0.82 1
(CA858621) EST635876 GLSD Medicago truncatula cDNA clone pGL... 48 0.82 1
(CA858229) EST635484 GLSD Medicago truncatula cDNA clone pGL... 48 0.82 1
(CA858137) EST635392 GLSD Medicago truncatula cDNA clone pGL... 48 0.82 1
(BQ122514) EST608090 GLSD Medicago truncatula cDNA clone pGL... 48 0.82 1
(BQ122510) EST608086 GLSD Medicago truncatula cDNA clone pGL... 48 0.82 1
(BI312024) EST5313774 GESD Medicago truncatula cDNA clone pG... 48 0.82 1
(BI311940) EST5313690 GESD Medicago truncatula cDNA clone pG... 48 0.82 1
(BI311835) EST5313585 GESD Medicago truncatula cDNA clone pG... 48 0.82 1
(BI311653) EST5313403 GESD Medicago truncatula cDNA clone pG... 48 0.82 1
(BI311613) EST5313363 GESD Medicago truncatula cDNA clone pG... 48 0.82 1
(BI311149) EST5312899 GESD Medicago truncatula cDNA clone pG... 48 0.82 1
(BI311022) EST5312772 GESD Medicago truncatula cDNA clone pG... 48 0.82 1
(BI310333) EST5312083 GESD Medicago truncatula cDNA clone pG... 48 0.82 1
(BI310326) EST5312076 GESD Medicago truncatula cDNA clone pG... 48 0.82 1
(BI310228) EST5311978 GESD Medicago truncatula cDNA clone pG... 48 0.82 1
(BI310196) EST5311946 GESD Medicago truncatula cDNA clone pG... 48 0.82 1
(BI309905) EST5311655 GESD Medicago truncatula cDNA clone pG... 48 0.82 1
(CP001581) Clostridium botulinum A2 str. Kyoto, complete gen... 48 0.82 1
(CP001083) Clostridium botulinum Ba4 str. 657, complete genome. 48 0.82 1
(CP000939) Clostridium botulinum B1 str. Okra, complete genome. 48 0.82 1
(CP000728) Clostridium botulinum F str. Langeland, complete ... 48 0.82 1
(AZ530287) ENTCB41TR Entamoeba histolytica Sheared DNA Entam... 44 0.93 2
(AC176348) Strongylocentrotus purpuratus clone R3-3048N10, W... 46 0.93 4
(EA102684) Sequence 67 from patent US 7195870. 36 1.0 4
(AX323583) Sequence 71 from Patent WO0192565. 36 1.0 4
(AX277904) Sequence 67 from Patent WO0177375. 36 1.0 4
(GM995931) Sequence 71 from Patent EP2014776. 36 1.0 4
(AC080101) Homo sapiens chromosome 18 clone RP11-88B2 map 18... 36 1.1 9
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 38 1.1 21
(AC180813) Strongylocentrotus purpuratus clone R3-3071M12, W... 46 1.5 4
(BD061520) Genome DNA of symbiotic bacteria of aphid. 40 1.6 14
(AR409405) Sequence 1 from patent US 6632935. 40 1.6 14
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum... 40 1.6 14
(CP001158) Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisu... 40 1.6 14
(CP001161) Buchnera aphidicola str. 5A (Acyrthosiphon pisum)... 40 1.6 14
(CT009672) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 1.7 2
(BX950177) Zebrafish DNA sequence from clone CH211-101D21 in... 32 1.7 2
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet... 38 1.8 17
(DE171189) Bombyx mori genomic DNA, Fosmid clone:RO0320-A22_R. 36 1.9 3
(AC179338) Strongylocentrotus purpuratus clone R3-1102G22, W... 34 2.1 8
(AC139930) Rattus norvegicus clone CH230-53A11, WORKING DRAF... 46 2.1 5
(FS283238) Glycyrrhiza uralensis cDNA, clone: kanzou050DH06.... 32 2.2 2
(AM471378) Vitis vinifera contig VV78X137856.13, whole genom... 32 2.2 7
(AC127736) Rattus norvegicus clone CH230-167P19, WORKING DRA... 46 2.8 2
(AY971355) Brachyspira hyodysenteriae Trep (trep), putative ... 32 2.8 7
(CP001553) Borrelia burgdorferi 29805 plasmid 29805_lp25, co... 32 2.8 6
(AE000785) Borrelia burgdorferi B31 plasmid lp25, complete s... 32 2.8 6
(EI475342) PV_GBa0085J13.f PV_GBa Phaseolus vulgaris genomic... 36 2.9 2
(CR848681) Zebrafish DNA sequence from clone DKEY-36E17 in l... 46 3.2 1
(AL691510) Mouse DNA sequence from clone RP23-125C16 on chro... 46 3.2 1
(AC170584) Mus musculus chromosome 1, clone RP24-360E22, com... 46 3.2 1
(AC164575) Mus musculus 10 BAC RP23-455M6 (Roswell Park Canc... 46 3.2 1
(AC132407) Mus musculus BAC clone RP23-343G12 from 8, comple... 46 3.2 1
(AC127374) Mus musculus BAC clone RP23-46G11 from chromosome... 46 3.2 1
(AC125400) Mus musculus BAC clone RP24-380E10 from chromosom... 46 3.2 1
(AC118013) Mus musculus chromosome 1, clone RP23-455M18, com... 46 3.2 1
(AC117703) Mus musculus chromosome 10, clone RP23-465J13, co... 46 3.2 1
(AC113122) Mus musculus chromosome 8, clone RP23-349P4, comp... 46 3.2 1
(AP010554) Lotus japonicus genomic DNA, chromosome 5, clone:... 46 3.2 1
(AM432116) Vitis vinifera contig VV78X113208.30, whole genom... 46 3.2 1
(I95887) Sequence 1 from patent US 5733772. 46 3.2 1
(AR178096) Sequence 1 from patent US 6316000. 46 3.2 1
(AC194625) Ornithorhynchus anatinus BAC clone CH236-165F5 fr... 46 3.2 1
(L08135) Plasmodium falciparum transmission blocking target ... 46 3.2 1
(L04162) Plasmodium falciparum clone sY s230 (s230) mRNA, co... 46 3.2 1
(AL844503) Plasmodium falciparum 3D7 chromosome 4. 46 3.2 1
(AE001362) Plasmodium falciparum 3D7 chromosome 2, complete ... 46 3.2 1
(AC159416) Trypanosoma brucei chromosome 8 clone RPCI93-25E9... 46 3.2 1
(AC074030) Homo sapiens 12 BAC RP11-425I22 (Roswell Park Can... 46 3.2 1
(AC068762) Homo sapiens 3 BAC RP11-215N17 (Roswell Park Canc... 46 3.2 1
(AC016144) Homo sapiens 12 BAC RP11-367O10 (Roswell Park Can... 46 3.2 1
(AC137022) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 46 3.2 1
(AC129115) Rattus norvegicus clone CH230-339N18, WORKING DRA... 46 3.2 1
(AC126711) Rattus norvegicus clone CH230-5G18, *** SEQUENCIN... 46 3.2 1
(AC126081) Rattus norvegicus clone CH230-362H10, *** SEQUENC... 46 3.2 1
(AC125366) Rattus norvegicus clone CH230-4B4, *** SEQUENCING... 46 3.2 1
(AC119706) Rattus norvegicus clone CH230-80C7, *** SEQUENCIN... 46 3.2 1
(AC118713) Mus musculus clone RP24-127C14, WORKING DRAFT SEQ... 46 3.2 1
(AC117006) Rattus norvegicus clone CH230-355I2, *** SEQUENCI... 46 3.2 1
(AC115656) Rattus norvegicus clone CH230-232E20, *** SEQUENC... 46 3.2 1
(AC115642) Rattus norvegicus clone CH230-204D2, WORKING DRAF... 46 3.2 1
(AC101526) Mus musculus clone RP23-191D5, LOW-PASS SEQUENCE ... 46 3.2 1
(AC094817) Rattus norvegicus clone CH230-5J7, WORKING DRAFT ... 46 3.2 1
(AC094802) Rattus norvegicus clone CH230-5A20, *** SEQUENCIN... 46 3.2 1
(AC073356) Homo sapiens chromosome 3 clone RP11-262K3, WORKI... 46 3.2 1
(AP009938) Lotus japonicus genomic DNA, clone: LjT43K18, TM2... 46 3.2 1
(AC197973) Myotis lucifugus clone CH235-451O16, WORKING DRAF... 46 3.2 1
(AC179534) Strongylocentrotus purpuratus clone R3-1035A8, WO... 46 3.2 1
(AC178057) Strongylocentrotus purpuratus clone R3-3056G04, W... 46 3.2 1
(AC177052) Strongylocentrotus purpuratus clone R3-4004B23, W... 46 3.2 1
(AC176151) Strongylocentrotus purpuratus clone R3-2I13, WORK... 46 3.2 1
(AC174855) Atelerix albiventris clone LB4-22O18, WORKING DRA... 46 3.2 1
(AC168500) Strongylocentrotus purpuratus clone R3-3117D23, W... 46 3.2 1
(BH531607) BOGLS06TR BOGL Brassica oleracea genomic clone BO... 46 3.2 1
(AZ408774) 1M0180D24F Mouse 10kb plasmid UUGC1M library Mus ... 46 3.2 1
(ET084041) QM0AAC5DH10FM2 CCH3 Citrus clementina genomic clo... 46 3.2 1
(ER850544) POTJH79TR Solanum tuberosum RHPOTKEY BAC ends Sol... 46 3.2 1
(EK448063) 1095467057724 Global-Ocean-Sampling_GS-32-01-01-1... 46 3.2 1
(ED780285) GM_WBb0159B15.f GM_WBb Glycine max genomic clone ... 46 3.2 1
(DX447991) BE2006_I14_F IASMA L2 HindIII BAC library Vitis v... 46 3.2 1
(CW955365) TcB45.3_B09_T7 Tribolium BAC library Tribolium ca... 46 3.2 1
(CE136023) tigr-gss-dog-17000326532830 Dog Library Canis lup... 46 3.2 1
(B15878) 346F19.TV CIT978SKA1 Homo sapiens genomic clone A-3... 46 3.2 1
(BZ014570) oep87a10.b1 B.oleracea002 Brassica oleracea genom... 46 3.2 1
(AG228329) Lotus japonicus DNA, clone:LjB16b21_r. 46 3.2 1
(EH758786) CNSL3982.b1_L11.ab1 CNS(LMS) yellow starthistle C... 46 3.2 1
(EB045839) OpilSEQ10433 Ophiostoma piliferum pBluescript (Ec... 46 3.2 1
(EB044855) OpilSEQ8889 Ophiostoma piliferum pBluescript (Eco... 46 3.2 1
(EB044091) OpilSEQ7834 Ophiostoma piliferum pBluescript (Eco... 46 3.2 1
(DT768121) EST1201970 Aquilegia cDNA library Aquilegia formo... 46 3.2 1
(DR949639) EST1141178 Aquilegia cDNA library Aquilegia formo... 46 3.2 1
(DR935531) EST1127070 Aquilegia cDNA library Aquilegia formo... 46 3.2 1
(DR933888) EST1125427 Aquilegia cDNA library Aquilegia formo... 46 3.2 1
(CI624169) Oryza sativa Japonica Group cDNA, clone: J03B3147... 46 3.2 1
(CA855537) PfESToac54c05.y1 Plasmodium falciparum 3D7 gameto... 46 3.2 1
(CA854331) PfESToac17d03.y1 Plasmodium falciparum 3D7 gameto... 46 3.2 1
(BU725179) SJMBXH12 SJM Schistosoma japonicum cDNA, mRNA seq... 46 3.2 1
(BM273855) PfESToaa60e01.y1 Plasmodium falciparum 3D7 gameto... 46 3.2 1
(BM273641) PfESToaa57f02.y1 Plasmodium falciparum 3D7 gameto... 46 3.2 1
(BM273422) PfESToaa50f01.y1 Plasmodium falciparum 3D7 gameto... 46 3.2 1
(GD092818) KS19060B05 KS19 Capsicum annuum cDNA, mRNA sequence. 46 3.2 1
(FD454467) EGGAU96TF Haematobia irritans eggs Haematobia irr... 46 3.2 1
(EY069333) CATG2288.rev CATG Artemisia annua, Tanzanian, fro... 46 3.2 1
(CP000937) Francisella philomiragia subsp. philomiragia ATCC... 46 3.2 1
(AE017262) Listeria monocytogenes str. 4b F2365, complete ge... 46 3.2 1
(BH478491) BOGPR46TF BOGP Brassica oleracea genomic clone BO... 44 3.3 2
(BH485341) BOGYO79TF BOGY Brassica oleracea genomic clone BO... 44 3.3 2
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 32 3.5 9
(AC117082) Dictyostelium discoideum chromosome 2 map complem... 36 3.5 4
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 36 4.0 17
(AC212432) Solanum lycopersicum chromosome 11 clone C11HBa00... 38 4.0 8
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 34 4.1 13
(BH999187) oej71b03.g1 B.oleracea002 Brassica oleracea genom... 34 4.7 3
(DJ387407) Diagnosis of Diseases Associated with Apoptosis. 36 5.3 4
(AX346220) Sequence 1291 from Patent WO0200928. 36 5.3 4
(AX281315) Sequence 57 from Patent WO0177164. 36 5.3 4
(BH988848) oeh39c08.b1 B.oleracea002 Brassica oleracea genom... 34 5.3 3
(CP001314) Borrelia garinii Far04 plasmid Far04_lp36, comple... 40 5.5 5
(FB571359) Sequence 226 from Patent EP1865317. 36 5.6 11
(FB571303) Sequence 170 from Patent EP1865317. 36 5.6 11
(EK373713) 1095469429544 Global-Ocean-Sampling_GS-31-01-01-1... 28 5.8 4
(EK310594) 1095462395827 Global-Ocean-Sampling_GS-31-01-01-1... 32 5.9 3
(AC183174) Bos taurus clone CH240-100C18, WORKING DRAFT SEQU... 34 6.0 2
(AL935062) Zebrafish DNA sequence from clone CH211-231F23 in... 32 6.1 2
(CU013530) M.truncatula DNA sequence from clone MTH2-115K7 o... 32 6.2 2
(AC140742) Rattus norvegicus clone CH230-460F13, WORKING DRA... 32 6.2 2
(AC232453) Brassica rapa subsp. pekinensis clone KBrB017O23,... 32 6.2 2
(ER441775) 1092963815900 Global-Ocean-Sampling_GS-35-01-01-1... 34 6.3 3
(AP009748) Lotus japonicus genomic DNA, chromosome 2, clone:... 34 6.4 6
(AX344559) Sequence 10 from Patent WO0200932. 30 6.5 12
(EU912438) Vaucheria litorea chloroplast, complete genome. 38 6.6 8
(AC196763) Citrus sinensis clone CSRBBa-044K07, WORKING DRAF... 38 6.7 7
(AC144417) Rattus norvegicus clone CH230-321J10, WORKING DRA... 40 6.9 4
(AP001302) Arabidopsis thaliana genomic DNA, chromosome 3, T... 40 6.9 3
(EK548142) 1095516103661 Global-Ocean-Sampling_GS-32-01-01-1... 36 7.0 3
(CS374526) Sequence 629 from Patent WO2006034879. 32 7.4 2
(CS374254) Sequence 357 from Patent WO2006034879. 32 7.4 2
(EK552136) 1095516121709 Global-Ocean-Sampling_GS-32-01-01-1... 36 7.4 3
(CS604569) Sequence 3555 from Patent WO2007039234. 34 7.7 2
(CS602921) Sequence 1907 from Patent WO2007039234. 34 7.7 2
(EJ850599) 1093017880180 Global-Ocean-Sampling_GS-30-02-01-1... 34 7.9 3
(DX552162) GH_MBb0036K10r GH_MBb Gossypium hirsutum genomic ... 32 8.0 2
(ED514657) KBrB099B13R KBrB, Brassica rapa BamHI BAC library... 32 8.1 2
(ED515390) KBrB100B13R KBrB, Brassica rapa BamHI BAC library... 32 8.1 2
(BH149388) ENTQK27TR Entamoeba histolytica Sheared DNA Entam... 32 8.1 2
(DX031952) KBrB028O21F KBrB, Brassica rapa BamHI BAC library... 32 8.1 2
(DX075087) KBrB085P08F KBrB, Brassica rapa BamHI BAC library... 32 8.1 2
(EJ641356) 1093011914239 Global-Ocean-Sampling_GS-29-01-01-1... 36 8.2 3
(AW333002) S16A8 AGS-1 Pneumocystis carinii cDNA 3', mRNA se... 32 8.2 2
(AC177199) Strongylocentrotus purpuratus clone R3-4018N2, WO... 42 8.2 3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 32 8.4 15
(AB073701) Borrelia duttonii plasmid DNA, complete sequence,... 40 8.4 4
(AW333207) S18F11 AGS-1 Pneumocystis carinii cDNA 3', mRNA s... 32 8.4 2
(AC118368) Rattus norvegicus clone CH230-333H3, *** SEQUENCI... 42 8.5 3
(CP001357) Brachyspira hyodysenteriae WA1, complete genome. 42 8.9 17
(AC211082) Solanum lycopersicum chromosome 6 clone C06SLe012... 40 9.2 4
(AC138063) Medicago truncatula clone mth2-12h1, complete seq... 34 9.4 6
(AF106591) Caenorhabditis elegans cosmid T01A4, complete seq... 40 9.8 6
(AM480117) Vitis vinifera contig VV78X235695.2, whole genome... 42 9.8 2

>(AC116956) Dictyostelium discoideum chromosome 2 map 1418423-1684967
strain AX4, complete sequence.
Length = 266544

Score = 595 bits (300), Expect(6) = 0.0
Identities = 300/300 (100%)
Strand = Plus / Plus


Query: 517 tttaatattcaaacatcaattgttttaggagttttaggttttattggtatatttttctct 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82839 tttaatattcaaacatcaattgttttaggagttttaggttttattggtatatttttctct 82898


Query: 577 ggatatacaattattgtattggttgtatattcaactttacttttaccatacattttgtat 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82899 ggatatacaattattgtattggttgtatattcaactttacttttaccatacattttgtat 82958


Query: 637 ggtaagaaaccacaaaatacaggtcaacaatctcaagatcttttaaataatattattgtt 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82959 ggtaagaaaccacaaaatacaggtcaacaatctcaagatcttttaaataatattattgtt 83018


Query: 697 gtaatgaaaccaatcattgaaaatataattaaaatttcacaacaactttttactcaaatt 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83019 gtaatgaaaccaatcattgaaaatataattaaaatttcacaacaactttttactcaaatt 83078


Query: 757 ttagatttagccacaaataaaaaacaaccatcaccaggtattccaaatcaaaattattca 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83079 ttagatttagccacaaataaaaaacaaccatcaccaggtattccaaatcaaaattattca 83138

Score = 361 bits (182), Expect(6) = 0.0
Identities = 185/186 (99%)
Strand = Plus / Plus


Query: 122 tgtcatcaattttacataaaaaagcacagtttaaaaaacaattagaagatacatttaaag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82238 tgtcatcaattttacataaaaaagcacagtttaaaaaacaattagaagatacatttaaag 82297


Query: 182 accatcaagatttagttaaatatagtaaaaatgttttacttttaaatagacccatagatt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82298 accatcaagatttagttaaatatagtaaaaatgttttacttttaaatagacccatagatt 82357


Query: 242 ttggtgtactttttatattagtatcttttattttatactatttaaaaaatttcaatacat 301
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 82358 ttggtgtactttttatattagtatcttttattttatactattttaaaaatttcaatacat 82417


Query: 302 cagcac 307
||||||
Sbjct: 82418 cagcac 82423

Score = 238 bits (120), Expect(6) = 0.0
Identities = 120/120 (100%)
Strand = Plus / Plus


Query: 397 ccaactcaagattcaaaagatagttatgaagatattatcaatttaatagttaaagtaaaa 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82618 ccaactcaagattcaaaagatagttatgaagatattatcaatttaatagttaaagtaaaa 82677


Query: 457 tttgcattcagtgattcattatcagaattgaatagatttagacatgttaatccaactaaa 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82678 tttgcattcagtgattcattatcagaattgaatagatttagacatgttaatccaactaaa 82737

Score = 188 bits (95), Expect(6) = 0.0
Identities = 98/99 (98%)
Strand = Plus / Plus


Query: 1007 tcaacaacaagaagatgaacaacaagaagaagttttttatgccgaaagcaatttcactaa 1066
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 83324 tcaacaacaagaagatgaacaacaagaagaagttttttatgacgaaagcaatttcactaa 83383


Query: 1067 aaccaataatggttatgttaatcaatcaaatccaatcct 1105
|||||||||||||||||||||||||||||||||||||||
Sbjct: 83384 aaccaataatggttatgttaatcaatcaaatccaatcct 83422

Score = 75.8 bits (38), Expect(6) = 0.0
Identities = 38/38 (100%)
Strand = Plus / Plus


Query: 25 ctttcataccttcattaaattaattgacaattagtatc 62
||||||||||||||||||||||||||||||||||||||
Sbjct: 82141 ctttcataccttcattaaattaattgacaattagtatc 82178

Score = 30.2 bits (15), Expect(6) = 0.0
Identities = 18/19 (94%)
Strand = Plus / Plus


Query: 1195 ttaacaattttgtcactat 1213
||||||||||| |||||||
Sbjct: 83512 ttaacaattttctcactat 83530

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 1,306,874,719
Number of extensions: 86495808
Number of successful extensions: 7645709
Number of sequences better than 10.0: 249
Length of query: 1213
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 1189
Effective length of database: 102,084,959,077
Effective search space: 121379016342553
Effective search space used: 121379016342553
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 8. 1
Homology vs Protein
Query= Contig-U05118-1 (Contig-U05118-1Q) /CSM_Contig/Contig-U05118-1Q.Seq.d
(1213 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC116956_33(AC116956|pid:none) Dictyostelium discoideum chromoso... 420 e-116
BC071446_1(BC071446|pid:none) Danio rerio reticulon 1a, mRNA (cD... 40 0.13
DQ215997_1(DQ215997|pid:none) Taeniopygia guttata clone 0058P006... 38 0.84
AY164724_1(AY164724|pid:none) Gallus gallus RTN1-A (RTN1) mRNA, ... 38 0.84
AY164723_1(AY164723|pid:none) Gallus gallus RTN1-C (RTN1) mRNA, ... 38 0.84
AY555064_1(AY555064|pid:none) Danio rerio reticulon 8-c (rtn8) m... 37 1.1
AY555046_1(AY555046|pid:none) Danio rerio reticulon 5-a1(265/158... 37 1.4
AY555049_1(AY555049|pid:none) Danio rerio reticulon 5-a2 (rtn5) ... 37 1.4
BC090486_1(BC090486|pid:none) Danio rerio reticulon 1a, mRNA (cD... 37 1.4
BC163936_1(BC163936|pid:none) Danio rerio reticulon 1a, mRNA (cD... 37 1.4
AY555050_1(AY555050|pid:none) Danio rerio reticulon 5-c (rtn5) m... 37 1.4
BT011111_1(BT011111|pid:none) Drosophila melanogaster LD43688 fu... 37 1.9
AE014134_878(AE014134|pid:none) Drosophila melanogaster chromoso... 37 1.9
AE014134_873(AE014134|pid:none) Drosophila melanogaster chromoso... 37 1.9
AE014134_877(AE014134|pid:none) Drosophila melanogaster chromoso... 37 1.9
AE014134_875(AE014134|pid:none) Drosophila melanogaster chromoso... 37 1.9
AB074899_1(AB074899|pid:none) Mus musculus Rtn-1A mRNA for retic... 36 2.4
AK297492_1(AK297492|pid:none) Homo sapiens cDNA FLJ55108 complet... 36 2.4
U17603_1(U17603|pid:none) Rattus norvegicus rS-Rex-s mRNA, compl... 36 2.4
(Q8K0T0) RecName: Full=Reticulon-1; AltName: Full=Neuroendocrine... 36 2.4
A60021(A60021) tropomyosin-related protein, neuronal - rat &X52... 36 2.4
CT010476_2(CT010476|pid:none) Mouse DNA sequence from clone RP23... 36 2.4
BC116162_1(BC116162|pid:none) Bos taurus reticulon 1, mRNA (cDNA... 36 3.2
L10334_1(L10334|pid:none) Homo sapiens neuroendocrine-specific p... 35 4.2
(Q5IS59) RecName: Full=Reticulon-1; &AY665269_1(AY665269|pid:no... 35 4.2
(Q16799) RecName: Full=Reticulon-1; AltName: Full=Neuroendocrine... 35 4.2
CR457030_1(CR457030|pid:none) Homo sapiens full open reading fra... 35 4.2
CP001100_1456(CP001100|pid:none) Chloroherpeton thalassium ATCC ... 35 4.2
CP001185_1280(CP001185|pid:none) Thermosipho africanus TCF52B, c... 35 7.1
CP000236_745(CP000236|pid:none) Ehrlichia chaffeensis str. Arkan... 35 7.1
CP000771_1702(CP000771|pid:none) Fervidobacterium nodosum Rt17-B... 34 9.3

>AC116956_33(AC116956|pid:none) Dictyostelium discoideum chromosome
2 map 1418423-1684967 strain AX4, complete sequence.
Length = 331

Score = 420 bits (1079), Expect = e-116
Identities = 217/232 (93%), Positives = 217/232 (93%)
Frame = +1

Query: 121 MSSILHKKAQFKKQLEDTFKDHQDLVKYSKNVLLLNRPIDFGVLFILVSFILYYLKNFNT 300
MSSILHKKAQFKKQLEDTFKDHQDLVKYSKNVLLLNRPIDFGVLFILVSFILYY KNFNT
Sbjct: 1 MSSILHKKAQFKKQLEDTFKDHQDLVKYSKNVLLLNRPIDFGVLFILVSFILYYFKNFNT 60

Query: 301 SAXXXXXXXXXXXXXXHTIILNFNLKSITRVIPTQDSKDSYEDIINLIVKVKFAFSDSLS 480
SA HTIILNFNLKSITRVIPTQDSKDSYEDIINLIVKVKFAFSDSLS
Sbjct: 61 SALSFFSFFISFILILHTIILNFNLKSITRVIPTQDSKDSYEDIINLIVKVKFAFSDSLS 120

Query: 481 ELNRFRHVNPTKFNIQTSIVLGVLGFIGIFFSGYTIIVLVVYSTLLLPYILYGKKPQNTG 660
ELNRFRHVNPTKFNIQTSIVLGVLGFIGIFFSGYTIIVLVVYSTLLLPYILYGKKPQNTG
Sbjct: 121 ELNRFRHVNPTKFNIQTSIVLGVLGFIGIFFSGYTIIVLVVYSTLLLPYILYGKKPQNTG 180

Query: 661 QQSQDLLNNIIVVMKPIIENIIKISQQLFTQILDLATNKKQPSPGIPNQNYS 816
QQSQDLLNNIIVVMKPIIENIIKISQQLFTQILDLATNKKQPSPGIPNQNYS
Sbjct: 181 QQSQDLLNNIIVVMKPIIENIIKISQQLFTQILDLATNKKQPSPGIPNQNYS 232

Score = 57.4 bits (137), Expect = 1e-06
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = +3

Query: 1038 VFYAESNFTKTNNGYVNQSNPILKKRF 1118
VFY ESNFTKTNNGYVNQSNPILKKRF
Sbjct: 305 VFYDESNFTKTNNGYVNQSNPILKKRF 331

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,059,207,641
Number of extensions: 14647936
Number of successful extensions: 42087
Number of sequences better than 10.0: 31
Number of HSP's gapped: 42046
Number of HSP's successfully gapped: 32
Length of query: 404
Length of database: 1,061,185,681
Length adjustment: 131
Effective length of query: 273
Effective length of database: 633,018,993
Effective search space: 172814185089
Effective search space used: 172814185089
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.65 gvh: 0.37 alm: 0.21 top: 0.47 tms: 0.20 mit: 0.28 mip: 0.00
nuc: 0.08 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

44.0 %: endoplasmic reticulum
28.0 %: plasma membrane
8.0 %: mitochondrial
4.0 %: Golgi
4.0 %: vesicles of secretory system
4.0 %: nuclear
4.0 %: peroxisomal
4.0 %: cytoskeletal

>> prediction for Contig-U05118-1 is end

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 4
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0