Homology vs CSM-cDNA |
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Homology vs DNA |
Query= Contig-U05113-1 (Contig-U05113-1Q) /CSM_Contig/Contig-U05113-1Q.Seq.d (765 letters)
Database: ddbj_B 105,743,758 sequences; 104,622,809,269 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(C92807) Dictyostelium discoideum slug cDNA, clone SSF368. 729 0.0 3 (AU074128) Dictyostelium discoideum slug cDNA, clone SSJ571. 416 e-112 1 (AU072903) Dictyostelium discoideum slug cDNA, clone SSF368. 351 3e-92 1 (GE682674) CBUA7090.g1 B.anynana_head_nosize Bicyclus anynan... 58 1e-06 2 (GE664985) CBUC1893.b1 B.anynana_abdomen_nosize Bicyclus any... 58 1e-06 2 (GE682672) CBUA7090.b1 B.anynana_head_nosize Bicyclus anynan... 58 2e-06 2 (GE704378) CBUI884.b1 B.anynana_wing.0-3d_nosize Bicyclus an... 58 2e-06 2 (GE704379) CBUI884.g1 B.anynana_wing.0-3d_nosize Bicyclus an... 58 2e-06 2 (DY764810) CPP_old01_F13 Bicyclus anynana wings - CPP Bicycl... 58 2e-06 2 (DY771020) 5TH_new01_F02 Bicyclus anynana wings - 5TH instar... 58 2e-06 2 (GE682671) CBUA5554.b1 B.anynana_head_nosize Bicyclus anynan... 58 2e-06 2 (GE682673) CBUA5554.g1 B.anynana_head_nosize Bicyclus anynan... 58 2e-06 2 (GE713363) CBUP8408.g1 B.anynana_wing.4-6d_2-10kb Bicyclus a... 58 2e-06 2 (GE713362) CBUP8408.b1 B.anynana_wing.4-6d_2-10kb Bicyclus a... 58 2e-06 2 (DB729404) Apis mellifera head cDNA, RIKEN full-length enric... 42 3e-04 2 (GE737009) CBUG1154.b1 B.anynana_wing.LCPP_nosize Bicyclus a... 50 3e-04 2 (GE737010) CBUG1154.g1 B.anynana_wing.LCPP_nosize Bicyclus a... 50 3e-04 2 (GE664986) CBUC1893.g1 B.anynana_abdomen_nosize Bicyclus any... 50 0.003 2 (ES226305) MpSG_ag6_C07 Myzus persicae, tobacco lineage, aph... 54 0.008 1 (ES225842) MpSG_ag4_H09 Myzus persicae, tobacco lineage, aph... 54 0.008 1 (ES225367) MpSG_ag2_O01 Myzus persicae, tobacco lineage, aph... 54 0.008 1 (ES221069) MpGV_ag2_H16 Myzus persicae, line G006, PLRV infe... 54 0.008 1 (ES219617) MpGnorm_ag4_D08 Myzus persicae, tobacco lineage, ... 54 0.008 1 (ES218539) MpFVN_ag4_C23 Myzus persicae, line F001, PLRV fre... 54 0.008 1 (EE263363) E11_E11gf1k21_pDNRf_501928 Myzus persicae, line G... 54 0.008 1 (EE263250) C04_C04gf1b7_pDNRf_501678 Myzus persicae, line G0... 54 0.008 1 (EC390581) E06_E06nb3k11_pDNR-f_449650 Myzus persicae, tobac... 54 0.008 1 (EC389928) G11_G11h2p21_pDNRf_473576 Myzus persicae, tobacco... 54 0.008 1 (EC388053) G01_G01gm1h1_pDNRf_477048 Myzus persicae, line G0... 54 0.008 1 (DW014643) w8o20_M13F Myzus persicae, tobacco lineage, whole... 54 0.008 1 (DW010762) w11k15_M13F Myzus persicae, tobacco lineage, whol... 54 0.008 1 (DV741956) ID0AFF5DA10CM1 ID0AFF Acyrthosiphon pisum cDNA cl... 54 0.008 1 (CN757409) ID0AAA1CG10RM1 ApMS Acyrthosiphon pisum cDNA clon... 54 0.008 1 (CN757408) ID0AAA1CG10FM1 ApMS Acyrthosiphon pisum cDNA clon... 54 0.008 1 (CN756819) ID0AAA19DA06RM1 ApMS Acyrthosiphon pisum cDNA clo... 54 0.008 1 (CN753667) ID0AAA10DC08RM1 ApMS Acyrthosiphon pisum cDNA clo... 54 0.008 1 (CN748969) ApAL3SD-I-D5 ApAL3SD Acyrthosiphon pisum cDNA clo... 54 0.008 1 (CN587244) USDA-FP_130316 Acyrthosiphon pisum, Pea Aphid Acy... 54 0.008 1 (CN586164) USDA-FP_129236 Acyrthosiphon pisum, Pea Aphid Acy... 54 0.008 1 (CF587610) USDA-FP_120600-036 Acyrthosiphon pisum, Pea Aphid... 54 0.008 1 (GH708109) Ap-BrVp-VI-H4 Ap-BrVp Acyrthosiphon pisum cDNA 5'... 54 0.008 1 (FF332336) 280448190 Pea aphid whole body normalized full le... 54 0.008 1 (FF329743) 280441540 Pea aphid whole body normalized full le... 54 0.008 1 (FF329408) 280439452 Pea aphid whole body normalized full le... 54 0.008 1 (FF327717) 280433212 Pea aphid whole body normalized full le... 54 0.008 1 (EX639755) 256630058 Pea aphid whole body normalized full le... 54 0.008 1 (EX638963) 256624789 Pea aphid whole body normalized full le... 54 0.008 1 (EX638550) 256623834 Pea aphid whole body normalized full le... 54 0.008 1 (EX637813) 256618413 Pea aphid whole body normalized full le... 54 0.008 1 (EX617796) 255402181 Pea aphid whole body normalized full le... 54 0.008 1 (EX614563) 255388331 Pea aphid whole body normalized full le... 54 0.008 1 (FM992691) Candida dubliniensis CD36 chromosome 4, complete ... 52 0.033 1 (DY896812) SF9L01429 Spodoptera frugiperda cDNA Cell Line Li... 36 0.059 3 (EE282676) SAAH-aab11f02.g1 Agen 0058 Schmidtea mediterranea... 44 0.068 2 (EG349657) SAAH-aad06e06.g1 Agen 0058 Schmidtea mediterranea... 44 0.068 2 (DN308475) PL05016B2A12 cDNA from sexually mature hermaphodi... 44 0.069 2 (DN301947) PL04024A2A01 cDNA from sexually mature hermaphodi... 44 0.069 2 (EG413538) SAAH-aab11f02.b1 Agen 0058 Schmidtea mediterranea... 44 0.072 2 (EG349656) SAAH-aad06e06.b1 Agen 0058 Schmidtea mediterranea... 44 0.072 2 (DV078681) A17SFmidgut_004_5prime Spodoptera frugiperda midg... 36 0.076 3 (DY790884) Sf1M08601-5-1 Spodoptera frugiperda Midgut cDNA L... 36 0.081 3 (DL173522) Methods for Identifying the Target of a Compound ... 50 0.13 1 (AX489082) Sequence 6382 from Patent WO02053728. 50 0.13 1 (AR549772) Sequence 4903 from patent US 6747137. 50 0.13 1 (GE379545) 292355106 Nasonia vitripennis Male Pupae Nasonia ... 40 0.32 2 (ED348163) AUAC-aap67f06.b1 Ascaris suum whole genome shotgu... 34 0.37 2 (ED392604) AUAC-aal97h07.b1 Ascaris suum whole genome shotgu... 34 0.38 2 (DR394111) USDA-FP_154045 Adult Alate Aphis gossypii (WHAGA)... 48 0.51 1 (DR390925) USDA-FP_150857 Adult Alate Aphis gossypii (WHAGA)... 48 0.51 1 (C91014) Dictyostelium discoideum slug cDNA, clone SSJ571. 48 0.51 1 (CV845715) ID0AEE13AC08RM1 ID0AEE Acyrthosiphon pisum cDNA c... 44 0.55 2 (CN755450) ID0AAA15DE09RM1 ApMS Acyrthosiphon pisum cDNA clo... 44 0.75 2 (CN749841) ApAL3SD-XVIII-E12 ApAL3SD Acyrthosiphon pisum cDN... 44 0.84 2 (CF588074) USDA-FP_121200-099 Acyrthosiphon pisum, Pea Aphid... 44 0.96 2 (DV742009) ID0AFF5DF04CM1 ID0AFF Acyrthosiphon pisum cDNA cl... 44 1.0 2 (EX601923) 255328618 Pea aphid whole body normalized full le... 44 1.1 2 (EX601880) 255322932 Pea aphid whole body normalized full le... 44 1.1 2 (FF309545) 279376011 Pea aphid whole body normalized full le... 44 1.1 2 (FF317516) 280391754 Pea aphid whole body normalized full le... 44 1.1 2 (FF316877) 280385487 Pea aphid whole body normalized full le... 44 1.1 2 (DV739262) ID0AFF13AB11CM1 ID0AFF Acyrthosiphon pisum cDNA c... 44 1.1 2 (FF338602) 280471839 Pea aphid whole body normalized full le... 44 1.1 2 (FF300069) 279334819 Pea aphid whole body normalized full le... 44 1.1 2 (DV739382) ID0AFF13BF01CM1 ID0AFF Acyrthosiphon pisum cDNA c... 44 1.1 2 (DV739439) ID0AFF13CC06CM1 ID0AFF Acyrthosiphon pisum cDNA c... 44 1.1 2 (FF301036) 279340196 Pea aphid whole body normalized full le... 44 1.1 2 (EX611237) 255374949 Pea aphid whole body normalized full le... 44 1.1 2 (FE768668) CCAG4484.g1 CCAG Petrolisthes cinctipes heart, gi... 40 1.1 2 (FF329238) 280440837 Pea aphid whole body normalized full le... 44 1.2 2 (AC189643) Brassica rapa subsp. pekinensis clone KBrS008H22,... 34 1.2 5 (EX612681) 255379692 Pea aphid whole body normalized full le... 44 1.2 2 (EX611953) 255378789 Pea aphid whole body normalized full le... 44 1.2 2 (EK281787) 1095462298302 Global-Ocean-Sampling_GS-31-01-01-1... 40 1.5 2 (CR450832) Zebrafish DNA sequence from clone CH211-278F9 in ... 46 2.0 1 (CU012067) S.lycopersicum DNA sequence from clone LE_HBa-132... 46 2.0 1 (AC235455) Glycine max strain Williams 82 clone GM_WBb0167G2... 46 2.0 1 (AC235443) Glycine max strain Williams 82 clone GM_WBb0158D1... 46 2.0 1 (GP391285) Sequence 38017 from patent US 7511127. 46 2.0 1 (GP104460) Sequence 38017 from patent US 7468248. 46 2.0 1 (AC094497) Rattus norvegicus clone CH230-4E2, WORKING DRAFT ... 46 2.0 1 (CU179707) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.0 1 (CU138527) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.0 1 (AC166412) Bos taurus clone CH240-185K4, WORKING DRAFT SEQUE... 46 2.0 1 (EI315729) GM_WBc0048O05.f GM_WBc Glycine max genomic clone ... 46 2.0 1 (EC819787) SME00004568 esmbsro2 Sawyeria marylandensis cDNA,... 46 2.0 1 (CN583120) USDA-FP_126184 Acyrthosiphon pisum, Pea Aphid Acy... 46 2.0 1 (BQ782828) UI-R-FF0-cpl-o-08-0-UI.s1 NCI_CGAP_FF0 Rattus nor... 46 2.0 1 (FG360243) RM_G_02919 Eriocheir sinensis hepatopancreas cDNA... 46 2.0 1 (BA000028) Oceanobacillus iheyensis HTE831 DNA, complete gen... 46 2.0 1 (AX458578) Sequence 124 from Patent WO0246454. 34 3.6 5 (CU466991) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 3.9 2 (DY790823) Sf1M08505-3-1 Spodoptera frugiperda Midgut cDNA L... 36 4.3 2 (AM435276) Vitis vinifera contig VV78X155274.6, whole genome... 32 4.4 2 (CT320499) Sus scrofa genomic clone CH242-321N11, genomic su... 34 5.4 2 (CR041992) Forward strand read from insert in 5'HPRT inserti... 36 5.6 2 (FP016236) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 7.3 2 (BC077041) Xenopus tropicalis MGC89923 protein, mRNA (cDNA c... 44 8.0 1 (BC072888) Xenopus laevis transcription factor IIA small sub... 44 8.0 1 (AC144343) Medicago truncatula clone mth2-12c21, complete se... 44 8.0 1 (DJ387936) ISOLATED HUMAN TRANSPORTER PROTEINS, NUCLEIC ACID... 44 8.0 1 (AX522013) Sequence 3 from Patent WO02064628. 44 8.0 1 (AX356520) Sequence 3 from Patent WO0181413. 44 8.0 1 (GC766150) Sequence 81395 from patent US 6812339. 44 8.0 1 (GC698860) Sequence 14105 from patent US 6812339. 44 8.0 1 (GC696840) Sequence 12085 from patent US 6812339. 44 8.0 1 (AL390244) Human DNA sequence from clone RP11-280F22 on chro... 44 8.0 1 (AL356516) Human DNA sequence from clone RP11-75J9 on chromo... 44 8.0 1 (AL133367) Human chromosome 14 DNA sequence BAC R-600F24 of ... 44 8.0 1 (AC150959) Bos taurus clone CH240-261O22, WORKING DRAFT SEQU... 44 8.0 1 (AC149696) Bos taurus clone CH240-417I13, WORKING DRAFT SEQU... 44 8.0 1 (FP326701) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.0 1 (FP245463) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 8.0 1 (FP236277) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 8.0 1 (FP102880) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.0 1 (CU468695) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.0 1 (CU062588) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.0 1 (AP009868) Lotus japonicus genomic DNA, clone: LjB06N21, BM2... 44 8.0 1 (AC222390) Bos taurus clone CH240-417C12, WORKING DRAFT SEQU... 44 8.0 1 (AC169300) Bos taurus clone CH240-197I2, WORKING DRAFT SEQUE... 44 8.0 1 (ER838300) POTL168TF Solanum tuberosum RHPOTKEY BAC ends Sol... 44 8.0 1 (CT531172) A BAC library has been constructed from cultivar ... 44 8.0 1 (AG659523) Macaca fuscata fuscata DNA, clone: MSB2-078P21_F,... 44 8.0 1 (AV730182) Homo sapiens cDNA clone:HTFBLF06, 5'end, expresse... 44 8.0 1 (DV093067) 327-384-48_C16_M13-FP Nematostella vectensis norm... 44 8.0 1 (DV084306) 327-384-11_O23_KS Nematostella vectensis normaliz... 44 8.0 1 (DV083429) 327-384-39_K24_M13-FP Nematostella vectensis norm... 44 8.0 1 (DC134732) Xenopus laevis NBRP cDNA clone:xl339g01, 5' end. 44 8.0 1 (DC134424) Xenopus laevis NBRP cDNA clone:xl338g01, 5' end. 44 8.0 1 (DC134388) Xenopus laevis NBRP cDNA clone:xl338e05, 5' end. 44 8.0 1 (DC122842) Xenopus laevis NBRP cDNA clone:xl299f23, 5' end. 44 8.0 1 (DC087994) Xenopus laevis NBRP cDNA clone:rxl299f23, 3' end. 44 8.0 1 (DC060948) Xenopus laevis NBRP cDNA clone:xlk79p12ex, 5' end. 44 8.0 1 (DC037352) Xenopus laevis NBRP cDNA clone:xlk105g11ex, 5' end. 44 8.0 1 (CX448665) JGI_XZG26361.fwd NIH_XGC_tropGas7 Xenopus (Silura... 44 8.0 1 (CX448664) JGI_XZG26361.rev NIH_XGC_tropGas7 Xenopus (Silura... 44 8.0 1 (CX430530) JGI_XZG61655.fwd NIH_XGC_tropGas7 Xenopus (Silura... 44 8.0 1 (CX343997) JGI_XZT23258.fwd NIH_XGC_tropTad5 Xenopus (Silura... 44 8.0 1 (CX343996) JGI_XZT23258.rev NIH_XGC_tropTad5 Xenopus (Silura... 44 8.0 1 (CX130191) AGENCOURT_39737912 NICHD_XGC_Te2N Xenopus laevis ... 44 8.0 1 (CV837762) ID0ACC6AC08RM1 ID0ACC Acyrthosiphon pisum cDNA cl... 44 8.0 1 (AL878532) Xenopus tropicalis EST, clone TEgg066a16 5'. 44 8.0 1 (AL878531) Xenopus tropicalis EST, clone TEgg066a14 5'. 44 8.0 1 (AL860423) Xenopus tropicalis EST, clone TEgg051p24 5'. 44 8.0 1 (AL856623) Xenopus tropicalis EST, clone TEgg045o05 5'. 44 8.0 1 (CN750493) ApDT-XVI-C4 ApDT Acyrthosiphon pisum cDNA clone A... 44 8.0 1 (CF782414) AGENCOURT_15765096 XtSt10-30 Xenopus (Silurana) t... 44 8.0 1 (CA974595) AGENCOURT_10747929 Wellcome CRC pSK egg Xenopus l... 44 8.0 1 (BX774399) Xenopus tropicalis EST, clone TEgg066a16 3'. 44 8.0 1 (BX774398) Xenopus tropicalis EST, clone TEgg066a14 3'. 44 8.0 1 (BQ386680) NISC_mn19f01.y1 NICHD_XGC_Ov1 Xenopus laevis cDNA... 44 8.0 1 (BQ386679) NISC_mn19f01.x1 NICHD_XGC_Ov1 Xenopus laevis cDNA... 44 8.0 1 (BP704071) Xenopus laevis NBRP cDNA clone:XL510k02ex, 5' end. 44 8.0 1 (BP682800) Xenopus laevis NBRP cDNA clone:XL440m24ex, 5' end. 44 8.0 1 (BJ086977) Xenopus laevis cDNA clone:XL055a20, 3' end, singl... 44 8.0 1 (BJ083860) Xenopus laevis cDNA clone:XL086h02, 3' end, singl... 44 8.0 1 (BE026774) db31c03.x1 Xenopus laevis oocyte Xenopus laevis c... 44 8.0 1 (GH707771) Ap-BrVp-II-H2 Ap-BrVp Acyrthosiphon pisum cDNA 5'... 44 8.0 1 (FN005837) Petunia axillaris subsp. axillaris EST, clone dr0... 44 8.0 1 (FN005430) Petunia axillaris subsp. axillaris EST, clone dr0... 44 8.0 1 (FN002720) Petunia axillaris subsp. axillaris EST, clone dr0... 44 8.0 1 (FN000669) Petunia axillaris subsp. axillaris EST, clone dr0... 44 8.0 1 (FG088181) CMRC-FF-IH0-acj-j-24-0-CMRC.r1 Ceratitis capitata... 44 8.0 1 (FG068890) UI-FF-IF0-aab-h-17-0-UI.r1 Ceratitis capitata emb... 44 8.0 1 (FF311198) 279381458 Pea aphid whole body normalized full le... 44 8.0 1 (FC252073) CAGH7239.fwd CAGH Nematostella vectensis Nemve La... 44 8.0 1 (FC197762) CAAD5468.fwd CAAD Nematostella vectensis nemve_P1... 44 8.0 1 (FC197761) CAAD5468.rev CAAD Nematostella vectensis nemve_P1... 44 8.0 1 (FC192719) CAAD2052.fwd CAAD Nematostella vectensis nemve_P1... 44 8.0 1 (FC192718) CAAD2052.rev CAAD Nematostella vectensis nemve_P1... 44 8.0 1 (FC181171) CAAB2741.fwd CAAB Nematostella vectensis nemve_P1... 44 8.0 1 (FC181170) CAAB2741.rev CAAB Nematostella vectensis nemve_P1... 44 8.0 1 (ES522289) BIG_AF_30108 Brine Shrimp embryos, 15 hours after... 44 8.0 1 (ES498490) BIG_AF_6306 Brine Shrimp Adult (20 days after hat... 44 8.0 1 (AL138963) Human DNA sequence from clone RP11-290D2 on chrom... 40 9.2 5 (EE141458) SiJWD03BDQ Lausanne fire ant library Solenopsis i... 40 9.2 2
>(C92807) Dictyostelium discoideum slug cDNA, clone SSF368. Length = 533
Score = 729 bits (368), Expect(3) = 0.0 Identities = 368/368 (100%) Strand = Plus / Plus
Query: 69 catagaaatggcaaataaacaaaattactacgaattgtatagaaaatcaactatcggtga 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 catagaaatggcaaataaacaaaattactacgaattgtatagaaaatcaactatcggtga 60
Query: 129 agcattaacagatactttggaggaattattaatcaatcaatatatttcaaactctttata 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 agcattaacagatactttggaggaattattaatcaatcaatatatttcaaactctttata 120
Query: 189 tcaaaagattttaacacaattcgataaaactatcaatgaagcactttcaaatacagtaaa 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tcaaaagattttaacacaattcgataaaactatcaatgaagcactttcaaatacagtaaa 180
Query: 249 agcaaaaactacatttaagggaagtcttcatacttatagattttgtgatagtgtttggac 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 agcaaaaactacatttaagggaagtcttcatacttatagattttgtgatagtgtttggac 240
Query: 309 atttattttagaaaatgcacaatttaaaacagaagcaaatgaaattgtcaaggttgatag 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 atttattttagaaaatgcacaatttaaaacagaagcaaatgaaattgtcaaggttgatag 300
Query: 369 agttaaaattgtagcttgtgatgccaacgttcaagatgctcctccaccaaaataagtttt 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 agttaaaattgtagcttgtgatgccaacgttcaagatgctcctccaccaaaataagtttt 360
Query: 429 aaaattcc 436 |||||||| Sbjct: 361 aaaattcc 368
Score = 159 bits (80), Expect(3) = 0.0 Identities = 83/84 (98%) Strand = Plus / Plus
Query: 482 caatactataatgaattcaactttatcataacaaatgcattaaaattttaataatatctt 541 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 414 caatactataatgaattcaactttatcataacaactgcattaaaattttaataatatctt 473
Query: 542 acataacaaatctctttttgcgag 565 |||||||||||||||||||||||| Sbjct: 474 acataacaaatctctttttgcgag 497
Score = 52.0 bits (26), Expect(3) = 0.0 Identities = 26/26 (100%) Strand = Plus / Plus
Query: 448 cttttaattagcttcaaaaacaaatc 473 |||||||||||||||||||||||||| Sbjct: 380 cttttaattagcttcaaaaacaaatc 405
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 105743758 Number of Hits to DB: 753,002,305 Number of extensions: 47707280 Number of successful extensions: 4070362 Number of sequences better than 10.0: 196 Length of query: 765 Length of database: 104,622,809,269 Length adjustment: 24 Effective length of query: 741 Effective length of database: 102,084,959,077 Effective search space: 75644954676057 Effective search space used: 75644954676057 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
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Homology vs Protein |
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