Contig-U05113-1
Contig ID Contig-U05113-1
Contig update 2002. 9.13
Contig sequence
>Contig-U05113-1 (Contig-U05113-1Q) /CSM_Contig/Contig-U05113-1Q.Seq.d
ATTTACACATTTATTTTTTAAAACAATTAATTACAAAAAACAAAATATAT
TTACATATTTTTTCACCACATAGAAATGGCAAATAAACAAAATTACTACG
AATTGTATAGAAAATCAACTATCGGTGAAGCATTAACAGATACTTTGGAG
GAATTATTAATCAATCAATATATTTCAAACTCTTTATATCAAAAGATTTT
AACACAATTCGATAAAACTATCAATGAAGCACTTTCAAATACAGTAAAAG
CAAAAACTACATTTAAGGGAAGTCTTCATACTTATAGATTTTGTGATAGT
GTTTGGACATTTATTTTAGAAAATGCACAATTTAAAACAGAAGCAAATGA
AATTGTCAAGGTTGATAGAGTTAAAATTGTAGCTTGTGATGCCAACGTTC
AAGATGCTCCTCCACCAAAATAAGTTTTAAAATTCCTTTTTTTTTTTCTT
TTAATTAGCTTCAAAAACAAATCAAAAAAAACAATACTATAATGAATTCA
ACTTTATCATAACAAATGCATTAAAATTTTAATAATATCTTACATAACAA
ATCTCTTTTTGCGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAA
AAAAAAAAAAAAAAAAAACCATATATTTGCACCTTCAAACCAAACCAAAC
CAAAACAAATCAAATTAAAACCAATCATTTTTCATCATTCATTGTAAATT
AATTCAAATTTTTTCGAGATTTTAACAAATATTTAATGTTAATAATAAAT
ATATTTTTGATTAAC

Gap no gap
Contig length 765
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3123190
End point 3123955
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U05113
List of clone(s)

est1=SSF368E,1,601
est2=SSJ571E,34,766
Translated Amino Acid sequence
iytfif*nn*LQKTKYIYIFFHHIEMANKQNYYELYRKSTIGEALTDTLEELLINQYISN
SLYQKILTQFDKTINEALSNTVKAKTTFKGSLHTYRFCDSVWTFILENAQFKTEANEIVK
VDRVKIVACDANVQDAPPPK*vlkflfffllisfknkskktil**iqlyhnkcikiliis
yitnlflrekkkkkkkkkrkkkkkkkpyictfkpnqtktnqiktnhfssfivn*fkffrd
fnkylmliiniflin


Translated Amino Acid sequence (All Frames)
Frame A:
iytfif*nn*LQKTKYIYIFFHHIEMANKQNYYELYRKSTIGEALTDTLEELLINQYISN
SLYQKILTQFDKTINEALSNTVKAKTTFKGSLHTYRFCDSVWTFILENAQFKTEANEIVK
VDRVKIVACDANVQDAPPPK*vlkflfffllisfknkskktil**iqlyhnkcikiliis
yitnlflrekkkkkkkkkrkkkkkkkpyictfkpnqtktnqiktnhfssfivn*fkffrd
fnkylmliiniflin


Frame B:
fthlffktinykkqniftyfftt*kwqinkittncienqlsvkh*qilwrny*sinifqt
lyikrf*hnsiklsmkhfqiq*kqklhlrevfilidfvivfghlf*kmhnlkqkqmklsr
lielkl*lvmptfkmllhqnkf*nsfffff*lasktnqkkqyynefnfiitnalkf**yl
t*qisfcekkkkkkkkkkekkkkkknhifapsnqtkpkqiklkpiifhhsl*insnffei
ltni*c***iyf*l


Frame C:
lhiyflkqlitknkiylhifsphrngk*tkllriv*kinyr*sinryfggiinqsiyfkl
fiskdfntir*nyq*stfkysksknyi*gkssyl*il**cldiyfrkcti*nrsk*ncqg
**s*ncsl*cqrsrcsstkisfkipfffsfn*lqkqikknntimnstls*qmh*nfnnil
hnkslfarkkkkkkkkkkkkkkkkktiylhlqtkpnqnksn*nqsffiihckliqifsrf
*qifnvnnkyifd*


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05113-1 (Contig-U05113-1Q)
/CSM_Contig/Contig-U05113-1Q.Seq.d
(765 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05113-1 (Contig-U05113-1Q) /CSM_Contig/Conti... 882 0.0
Contig-U12384-1 (Contig-U12384-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U05597-1 (Contig-U05597-1Q) /CSM_Contig/Conti... 38 0.014
Contig-U04735-1 (Contig-U04735-1Q) /CSM_Contig/Conti... 36 0.054
Contig-U14276-1 (Contig-U14276-1Q) /CSM_Contig/Conti... 34 0.21
Contig-U13870-1 (Contig-U13870-1Q) /CSM_Contig/Conti... 34 0.21
Contig-U13851-1 (Contig-U13851-1Q) /CSM_Contig/Conti... 34 0.21
Contig-U13421-1 (Contig-U13421-1Q) /CSM_Contig/Conti... 34 0.21
Contig-U12394-1 (Contig-U12394-1Q) /CSM_Contig/Conti... 34 0.21
Contig-U11827-1 (Contig-U11827-1Q) /CSM_Contig/Conti... 34 0.21

>Contig-U05113-1 (Contig-U05113-1Q) /CSM_Contig/Contig-U05113-1Q.Seq.d
Length = 765

Score = 882 bits (445), Expect = 0.0
Identities = 483/502 (96%)
Strand = Plus / Plus


Query: 64 caccacatagaaatggcaaataaacaaaattactacgaattgtatagaaaatcaactatc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 caccacatagaaatggcaaataaacaaaattactacgaattgtatagaaaatcaactatc 123


Query: 124 ggtgaagcattaacagatactttggaggaattattaatcaatcaatatatttcaaactct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ggtgaagcattaacagatactttggaggaattattaatcaatcaatatatttcaaactct 183


Query: 184 ttatatcaaaagattttaacacaattcgataaaactatcaatgaagcactttcaaataca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ttatatcaaaagattttaacacaattcgataaaactatcaatgaagcactttcaaataca 243


Query: 244 gtaaaagcaaaaactacatttaagggaagtcttcatacttatagattttgtgatagtgtt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gtaaaagcaaaaactacatttaagggaagtcttcatacttatagattttgtgatagtgtt 303


Query: 304 tggacatttattttagaaaatgcacaatttaaaacagaagcaaatgaaattgtcaaggtt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tggacatttattttagaaaatgcacaatttaaaacagaagcaaatgaaattgtcaaggtt 363


Query: 364 gatagagttaaaattgtagcttgtgatgccaacgttcaagatgctcctccaccaaaataa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gatagagttaaaattgtagcttgtgatgccaacgttcaagatgctcctccaccaaaataa 423


Query: 424 gttttaaaattccnnnnnnnnnnncttttaattagcttcaaaaacaaatcnnnnnnnnca 483
||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 424 gttttaaaattcctttttttttttcttttaattagcttcaaaaacaaatcaaaaaaaaca 483


Query: 484 atactataatgaattcaactttatcataacaaatgcattaaaattttaataatatcttac 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 atactataatgaattcaactttatcataacaaatgcattaaaattttaataatatcttac 543


Query: 544 ataacaaatctctttttgcgag 565
||||||||||||||||||||||
Sbjct: 544 ataacaaatctctttttgcgag 565


Score = 180 bits (91), Expect = 1e-45
Identities = 91/91 (100%)
Strand = Plus / Plus


Query: 675 tcatttttcatcattcattgtaaattaattcaaattttttcgagattttaacaaatattt 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tcatttttcatcattcattgtaaattaattcaaattttttcgagattttaacaaatattt 734


Query: 735 aatgttaataataaatatatttttgattaac 765
|||||||||||||||||||||||||||||||
Sbjct: 735 aatgttaataataaatatatttttgattaac 765


Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 619 ccatatatttgcacctt 635
|||||||||||||||||
Sbjct: 619 ccatatatttgcacctt 635


>Contig-U12384-1 (Contig-U12384-1Q) /CSM_Contig/Contig-U12384-1Q.Seq.d
Length = 1671

Score = 40.1 bits (20), Expect = 0.003
Identities = 20/20 (100%)
Strand = Plus / Minus


Query: 739 ttaataataaatatattttt 758
||||||||||||||||||||
Sbjct: 1594 ttaataataaatatattttt 1575


>Contig-U05597-1 (Contig-U05597-1Q) /CSM_Contig/Contig-U05597-1Q.Seq.d
Length = 827

Score = 38.2 bits (19), Expect = 0.014
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 727 aaatatttaatgttaataataaa 749
|||||||||||| ||||||||||
Sbjct: 779 aaatatttaatgataataataaa 801


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,784
Number of Sequences: 6905
Number of extensions: 11784
Number of successful extensions: 1415
Number of sequences better than 10.0: 180
length of query: 765
length of database: 5,674,871
effective HSP length: 16
effective length of query: 749
effective length of database: 5,564,391
effective search space: 4167728859
effective search space used: 4167728859
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7.12
Homology vs DNA
Query= Contig-U05113-1 (Contig-U05113-1Q) /CSM_Contig/Contig-U05113-1Q.Seq.d
(765 letters)

Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C92807) Dictyostelium discoideum slug cDNA, clone SSF368. 729 0.0 3
(AU074128) Dictyostelium discoideum slug cDNA, clone SSJ571. 416 e-112 1
(AU072903) Dictyostelium discoideum slug cDNA, clone SSF368. 351 3e-92 1
(GE682674) CBUA7090.g1 B.anynana_head_nosize Bicyclus anynan... 58 1e-06 2
(GE664985) CBUC1893.b1 B.anynana_abdomen_nosize Bicyclus any... 58 1e-06 2
(GE682672) CBUA7090.b1 B.anynana_head_nosize Bicyclus anynan... 58 2e-06 2
(GE704378) CBUI884.b1 B.anynana_wing.0-3d_nosize Bicyclus an... 58 2e-06 2
(GE704379) CBUI884.g1 B.anynana_wing.0-3d_nosize Bicyclus an... 58 2e-06 2
(DY764810) CPP_old01_F13 Bicyclus anynana wings - CPP Bicycl... 58 2e-06 2
(DY771020) 5TH_new01_F02 Bicyclus anynana wings - 5TH instar... 58 2e-06 2
(GE682671) CBUA5554.b1 B.anynana_head_nosize Bicyclus anynan... 58 2e-06 2
(GE682673) CBUA5554.g1 B.anynana_head_nosize Bicyclus anynan... 58 2e-06 2
(GE713363) CBUP8408.g1 B.anynana_wing.4-6d_2-10kb Bicyclus a... 58 2e-06 2
(GE713362) CBUP8408.b1 B.anynana_wing.4-6d_2-10kb Bicyclus a... 58 2e-06 2
(DB729404) Apis mellifera head cDNA, RIKEN full-length enric... 42 3e-04 2
(GE737009) CBUG1154.b1 B.anynana_wing.LCPP_nosize Bicyclus a... 50 3e-04 2
(GE737010) CBUG1154.g1 B.anynana_wing.LCPP_nosize Bicyclus a... 50 3e-04 2
(GE664986) CBUC1893.g1 B.anynana_abdomen_nosize Bicyclus any... 50 0.003 2
(ES226305) MpSG_ag6_C07 Myzus persicae, tobacco lineage, aph... 54 0.008 1
(ES225842) MpSG_ag4_H09 Myzus persicae, tobacco lineage, aph... 54 0.008 1
(ES225367) MpSG_ag2_O01 Myzus persicae, tobacco lineage, aph... 54 0.008 1
(ES221069) MpGV_ag2_H16 Myzus persicae, line G006, PLRV infe... 54 0.008 1
(ES219617) MpGnorm_ag4_D08 Myzus persicae, tobacco lineage, ... 54 0.008 1
(ES218539) MpFVN_ag4_C23 Myzus persicae, line F001, PLRV fre... 54 0.008 1
(EE263363) E11_E11gf1k21_pDNRf_501928 Myzus persicae, line G... 54 0.008 1
(EE263250) C04_C04gf1b7_pDNRf_501678 Myzus persicae, line G0... 54 0.008 1
(EC390581) E06_E06nb3k11_pDNR-f_449650 Myzus persicae, tobac... 54 0.008 1
(EC389928) G11_G11h2p21_pDNRf_473576 Myzus persicae, tobacco... 54 0.008 1
(EC388053) G01_G01gm1h1_pDNRf_477048 Myzus persicae, line G0... 54 0.008 1
(DW014643) w8o20_M13F Myzus persicae, tobacco lineage, whole... 54 0.008 1
(DW010762) w11k15_M13F Myzus persicae, tobacco lineage, whol... 54 0.008 1
(DV741956) ID0AFF5DA10CM1 ID0AFF Acyrthosiphon pisum cDNA cl... 54 0.008 1
(CN757409) ID0AAA1CG10RM1 ApMS Acyrthosiphon pisum cDNA clon... 54 0.008 1
(CN757408) ID0AAA1CG10FM1 ApMS Acyrthosiphon pisum cDNA clon... 54 0.008 1
(CN756819) ID0AAA19DA06RM1 ApMS Acyrthosiphon pisum cDNA clo... 54 0.008 1
(CN753667) ID0AAA10DC08RM1 ApMS Acyrthosiphon pisum cDNA clo... 54 0.008 1
(CN748969) ApAL3SD-I-D5 ApAL3SD Acyrthosiphon pisum cDNA clo... 54 0.008 1
(CN587244) USDA-FP_130316 Acyrthosiphon pisum, Pea Aphid Acy... 54 0.008 1
(CN586164) USDA-FP_129236 Acyrthosiphon pisum, Pea Aphid Acy... 54 0.008 1
(CF587610) USDA-FP_120600-036 Acyrthosiphon pisum, Pea Aphid... 54 0.008 1
(GH708109) Ap-BrVp-VI-H4 Ap-BrVp Acyrthosiphon pisum cDNA 5'... 54 0.008 1
(FF332336) 280448190 Pea aphid whole body normalized full le... 54 0.008 1
(FF329743) 280441540 Pea aphid whole body normalized full le... 54 0.008 1
(FF329408) 280439452 Pea aphid whole body normalized full le... 54 0.008 1
(FF327717) 280433212 Pea aphid whole body normalized full le... 54 0.008 1
(EX639755) 256630058 Pea aphid whole body normalized full le... 54 0.008 1
(EX638963) 256624789 Pea aphid whole body normalized full le... 54 0.008 1
(EX638550) 256623834 Pea aphid whole body normalized full le... 54 0.008 1
(EX637813) 256618413 Pea aphid whole body normalized full le... 54 0.008 1
(EX617796) 255402181 Pea aphid whole body normalized full le... 54 0.008 1
(EX614563) 255388331 Pea aphid whole body normalized full le... 54 0.008 1
(FM992691) Candida dubliniensis CD36 chromosome 4, complete ... 52 0.033 1
(DY896812) SF9L01429 Spodoptera frugiperda cDNA Cell Line Li... 36 0.059 3
(EE282676) SAAH-aab11f02.g1 Agen 0058 Schmidtea mediterranea... 44 0.068 2
(EG349657) SAAH-aad06e06.g1 Agen 0058 Schmidtea mediterranea... 44 0.068 2
(DN308475) PL05016B2A12 cDNA from sexually mature hermaphodi... 44 0.069 2
(DN301947) PL04024A2A01 cDNA from sexually mature hermaphodi... 44 0.069 2
(EG413538) SAAH-aab11f02.b1 Agen 0058 Schmidtea mediterranea... 44 0.072 2
(EG349656) SAAH-aad06e06.b1 Agen 0058 Schmidtea mediterranea... 44 0.072 2
(DV078681) A17SFmidgut_004_5prime Spodoptera frugiperda midg... 36 0.076 3
(DY790884) Sf1M08601-5-1 Spodoptera frugiperda Midgut cDNA L... 36 0.081 3
(DL173522) Methods for Identifying the Target of a Compound ... 50 0.13 1
(AX489082) Sequence 6382 from Patent WO02053728. 50 0.13 1
(AR549772) Sequence 4903 from patent US 6747137. 50 0.13 1
(GE379545) 292355106 Nasonia vitripennis Male Pupae Nasonia ... 40 0.32 2
(ED348163) AUAC-aap67f06.b1 Ascaris suum whole genome shotgu... 34 0.37 2
(ED392604) AUAC-aal97h07.b1 Ascaris suum whole genome shotgu... 34 0.38 2
(DR394111) USDA-FP_154045 Adult Alate Aphis gossypii (WHAGA)... 48 0.51 1
(DR390925) USDA-FP_150857 Adult Alate Aphis gossypii (WHAGA)... 48 0.51 1
(C91014) Dictyostelium discoideum slug cDNA, clone SSJ571. 48 0.51 1
(CV845715) ID0AEE13AC08RM1 ID0AEE Acyrthosiphon pisum cDNA c... 44 0.55 2
(CN755450) ID0AAA15DE09RM1 ApMS Acyrthosiphon pisum cDNA clo... 44 0.75 2
(CN749841) ApAL3SD-XVIII-E12 ApAL3SD Acyrthosiphon pisum cDN... 44 0.84 2
(CF588074) USDA-FP_121200-099 Acyrthosiphon pisum, Pea Aphid... 44 0.96 2
(DV742009) ID0AFF5DF04CM1 ID0AFF Acyrthosiphon pisum cDNA cl... 44 1.0 2
(EX601923) 255328618 Pea aphid whole body normalized full le... 44 1.1 2
(EX601880) 255322932 Pea aphid whole body normalized full le... 44 1.1 2
(FF309545) 279376011 Pea aphid whole body normalized full le... 44 1.1 2
(FF317516) 280391754 Pea aphid whole body normalized full le... 44 1.1 2
(FF316877) 280385487 Pea aphid whole body normalized full le... 44 1.1 2
(DV739262) ID0AFF13AB11CM1 ID0AFF Acyrthosiphon pisum cDNA c... 44 1.1 2
(FF338602) 280471839 Pea aphid whole body normalized full le... 44 1.1 2
(FF300069) 279334819 Pea aphid whole body normalized full le... 44 1.1 2
(DV739382) ID0AFF13BF01CM1 ID0AFF Acyrthosiphon pisum cDNA c... 44 1.1 2
(DV739439) ID0AFF13CC06CM1 ID0AFF Acyrthosiphon pisum cDNA c... 44 1.1 2
(FF301036) 279340196 Pea aphid whole body normalized full le... 44 1.1 2
(EX611237) 255374949 Pea aphid whole body normalized full le... 44 1.1 2
(FE768668) CCAG4484.g1 CCAG Petrolisthes cinctipes heart, gi... 40 1.1 2
(FF329238) 280440837 Pea aphid whole body normalized full le... 44 1.2 2
(AC189643) Brassica rapa subsp. pekinensis clone KBrS008H22,... 34 1.2 5
(EX612681) 255379692 Pea aphid whole body normalized full le... 44 1.2 2
(EX611953) 255378789 Pea aphid whole body normalized full le... 44 1.2 2
(EK281787) 1095462298302 Global-Ocean-Sampling_GS-31-01-01-1... 40 1.5 2
(CR450832) Zebrafish DNA sequence from clone CH211-278F9 in ... 46 2.0 1
(CU012067) S.lycopersicum DNA sequence from clone LE_HBa-132... 46 2.0 1
(AC235455) Glycine max strain Williams 82 clone GM_WBb0167G2... 46 2.0 1
(AC235443) Glycine max strain Williams 82 clone GM_WBb0158D1... 46 2.0 1
(GP391285) Sequence 38017 from patent US 7511127. 46 2.0 1
(GP104460) Sequence 38017 from patent US 7468248. 46 2.0 1
(AC094497) Rattus norvegicus clone CH230-4E2, WORKING DRAFT ... 46 2.0 1
(CU179707) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.0 1
(CU138527) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.0 1
(AC166412) Bos taurus clone CH240-185K4, WORKING DRAFT SEQUE... 46 2.0 1
(EI315729) GM_WBc0048O05.f GM_WBc Glycine max genomic clone ... 46 2.0 1
(EC819787) SME00004568 esmbsro2 Sawyeria marylandensis cDNA,... 46 2.0 1
(CN583120) USDA-FP_126184 Acyrthosiphon pisum, Pea Aphid Acy... 46 2.0 1
(BQ782828) UI-R-FF0-cpl-o-08-0-UI.s1 NCI_CGAP_FF0 Rattus nor... 46 2.0 1
(FG360243) RM_G_02919 Eriocheir sinensis hepatopancreas cDNA... 46 2.0 1
(BA000028) Oceanobacillus iheyensis HTE831 DNA, complete gen... 46 2.0 1
(AX458578) Sequence 124 from Patent WO0246454. 34 3.6 5
(CU466991) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 3.9 2
(DY790823) Sf1M08505-3-1 Spodoptera frugiperda Midgut cDNA L... 36 4.3 2
(AM435276) Vitis vinifera contig VV78X155274.6, whole genome... 32 4.4 2
(CT320499) Sus scrofa genomic clone CH242-321N11, genomic su... 34 5.4 2
(CR041992) Forward strand read from insert in 5'HPRT inserti... 36 5.6 2
(FP016236) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 7.3 2
(BC077041) Xenopus tropicalis MGC89923 protein, mRNA (cDNA c... 44 8.0 1
(BC072888) Xenopus laevis transcription factor IIA small sub... 44 8.0 1
(AC144343) Medicago truncatula clone mth2-12c21, complete se... 44 8.0 1
(DJ387936) ISOLATED HUMAN TRANSPORTER PROTEINS, NUCLEIC ACID... 44 8.0 1
(AX522013) Sequence 3 from Patent WO02064628. 44 8.0 1
(AX356520) Sequence 3 from Patent WO0181413. 44 8.0 1
(GC766150) Sequence 81395 from patent US 6812339. 44 8.0 1
(GC698860) Sequence 14105 from patent US 6812339. 44 8.0 1
(GC696840) Sequence 12085 from patent US 6812339. 44 8.0 1
(AL390244) Human DNA sequence from clone RP11-280F22 on chro... 44 8.0 1
(AL356516) Human DNA sequence from clone RP11-75J9 on chromo... 44 8.0 1
(AL133367) Human chromosome 14 DNA sequence BAC R-600F24 of ... 44 8.0 1
(AC150959) Bos taurus clone CH240-261O22, WORKING DRAFT SEQU... 44 8.0 1
(AC149696) Bos taurus clone CH240-417I13, WORKING DRAFT SEQU... 44 8.0 1
(FP326701) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.0 1
(FP245463) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 8.0 1
(FP236277) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 8.0 1
(FP102880) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.0 1
(CU468695) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.0 1
(CU062588) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.0 1
(AP009868) Lotus japonicus genomic DNA, clone: LjB06N21, BM2... 44 8.0 1
(AC222390) Bos taurus clone CH240-417C12, WORKING DRAFT SEQU... 44 8.0 1
(AC169300) Bos taurus clone CH240-197I2, WORKING DRAFT SEQUE... 44 8.0 1
(ER838300) POTL168TF Solanum tuberosum RHPOTKEY BAC ends Sol... 44 8.0 1
(CT531172) A BAC library has been constructed from cultivar ... 44 8.0 1
(AG659523) Macaca fuscata fuscata DNA, clone: MSB2-078P21_F,... 44 8.0 1
(AV730182) Homo sapiens cDNA clone:HTFBLF06, 5'end, expresse... 44 8.0 1
(DV093067) 327-384-48_C16_M13-FP Nematostella vectensis norm... 44 8.0 1
(DV084306) 327-384-11_O23_KS Nematostella vectensis normaliz... 44 8.0 1
(DV083429) 327-384-39_K24_M13-FP Nematostella vectensis norm... 44 8.0 1
(DC134732) Xenopus laevis NBRP cDNA clone:xl339g01, 5' end. 44 8.0 1
(DC134424) Xenopus laevis NBRP cDNA clone:xl338g01, 5' end. 44 8.0 1
(DC134388) Xenopus laevis NBRP cDNA clone:xl338e05, 5' end. 44 8.0 1
(DC122842) Xenopus laevis NBRP cDNA clone:xl299f23, 5' end. 44 8.0 1
(DC087994) Xenopus laevis NBRP cDNA clone:rxl299f23, 3' end. 44 8.0 1
(DC060948) Xenopus laevis NBRP cDNA clone:xlk79p12ex, 5' end. 44 8.0 1
(DC037352) Xenopus laevis NBRP cDNA clone:xlk105g11ex, 5' end. 44 8.0 1
(CX448665) JGI_XZG26361.fwd NIH_XGC_tropGas7 Xenopus (Silura... 44 8.0 1
(CX448664) JGI_XZG26361.rev NIH_XGC_tropGas7 Xenopus (Silura... 44 8.0 1
(CX430530) JGI_XZG61655.fwd NIH_XGC_tropGas7 Xenopus (Silura... 44 8.0 1
(CX343997) JGI_XZT23258.fwd NIH_XGC_tropTad5 Xenopus (Silura... 44 8.0 1
(CX343996) JGI_XZT23258.rev NIH_XGC_tropTad5 Xenopus (Silura... 44 8.0 1
(CX130191) AGENCOURT_39737912 NICHD_XGC_Te2N Xenopus laevis ... 44 8.0 1
(CV837762) ID0ACC6AC08RM1 ID0ACC Acyrthosiphon pisum cDNA cl... 44 8.0 1
(AL878532) Xenopus tropicalis EST, clone TEgg066a16 5'. 44 8.0 1
(AL878531) Xenopus tropicalis EST, clone TEgg066a14 5'. 44 8.0 1
(AL860423) Xenopus tropicalis EST, clone TEgg051p24 5'. 44 8.0 1
(AL856623) Xenopus tropicalis EST, clone TEgg045o05 5'. 44 8.0 1
(CN750493) ApDT-XVI-C4 ApDT Acyrthosiphon pisum cDNA clone A... 44 8.0 1
(CF782414) AGENCOURT_15765096 XtSt10-30 Xenopus (Silurana) t... 44 8.0 1
(CA974595) AGENCOURT_10747929 Wellcome CRC pSK egg Xenopus l... 44 8.0 1
(BX774399) Xenopus tropicalis EST, clone TEgg066a16 3'. 44 8.0 1
(BX774398) Xenopus tropicalis EST, clone TEgg066a14 3'. 44 8.0 1
(BQ386680) NISC_mn19f01.y1 NICHD_XGC_Ov1 Xenopus laevis cDNA... 44 8.0 1
(BQ386679) NISC_mn19f01.x1 NICHD_XGC_Ov1 Xenopus laevis cDNA... 44 8.0 1
(BP704071) Xenopus laevis NBRP cDNA clone:XL510k02ex, 5' end. 44 8.0 1
(BP682800) Xenopus laevis NBRP cDNA clone:XL440m24ex, 5' end. 44 8.0 1
(BJ086977) Xenopus laevis cDNA clone:XL055a20, 3' end, singl... 44 8.0 1
(BJ083860) Xenopus laevis cDNA clone:XL086h02, 3' end, singl... 44 8.0 1
(BE026774) db31c03.x1 Xenopus laevis oocyte Xenopus laevis c... 44 8.0 1
(GH707771) Ap-BrVp-II-H2 Ap-BrVp Acyrthosiphon pisum cDNA 5'... 44 8.0 1
(FN005837) Petunia axillaris subsp. axillaris EST, clone dr0... 44 8.0 1
(FN005430) Petunia axillaris subsp. axillaris EST, clone dr0... 44 8.0 1
(FN002720) Petunia axillaris subsp. axillaris EST, clone dr0... 44 8.0 1
(FN000669) Petunia axillaris subsp. axillaris EST, clone dr0... 44 8.0 1
(FG088181) CMRC-FF-IH0-acj-j-24-0-CMRC.r1 Ceratitis capitata... 44 8.0 1
(FG068890) UI-FF-IF0-aab-h-17-0-UI.r1 Ceratitis capitata emb... 44 8.0 1
(FF311198) 279381458 Pea aphid whole body normalized full le... 44 8.0 1
(FC252073) CAGH7239.fwd CAGH Nematostella vectensis Nemve La... 44 8.0 1
(FC197762) CAAD5468.fwd CAAD Nematostella vectensis nemve_P1... 44 8.0 1
(FC197761) CAAD5468.rev CAAD Nematostella vectensis nemve_P1... 44 8.0 1
(FC192719) CAAD2052.fwd CAAD Nematostella vectensis nemve_P1... 44 8.0 1
(FC192718) CAAD2052.rev CAAD Nematostella vectensis nemve_P1... 44 8.0 1
(FC181171) CAAB2741.fwd CAAB Nematostella vectensis nemve_P1... 44 8.0 1
(FC181170) CAAB2741.rev CAAB Nematostella vectensis nemve_P1... 44 8.0 1
(ES522289) BIG_AF_30108 Brine Shrimp embryos, 15 hours after... 44 8.0 1
(ES498490) BIG_AF_6306 Brine Shrimp Adult (20 days after hat... 44 8.0 1
(AL138963) Human DNA sequence from clone RP11-290D2 on chrom... 40 9.2 5
(EE141458) SiJWD03BDQ Lausanne fire ant library Solenopsis i... 40 9.2 2

>(C92807) Dictyostelium discoideum slug cDNA, clone SSF368.
Length = 533

Score = 729 bits (368), Expect(3) = 0.0
Identities = 368/368 (100%)
Strand = Plus / Plus


Query: 69 catagaaatggcaaataaacaaaattactacgaattgtatagaaaatcaactatcggtga 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catagaaatggcaaataaacaaaattactacgaattgtatagaaaatcaactatcggtga 60


Query: 129 agcattaacagatactttggaggaattattaatcaatcaatatatttcaaactctttata 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agcattaacagatactttggaggaattattaatcaatcaatatatttcaaactctttata 120


Query: 189 tcaaaagattttaacacaattcgataaaactatcaatgaagcactttcaaatacagtaaa 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaaaagattttaacacaattcgataaaactatcaatgaagcactttcaaatacagtaaa 180


Query: 249 agcaaaaactacatttaagggaagtcttcatacttatagattttgtgatagtgtttggac 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agcaaaaactacatttaagggaagtcttcatacttatagattttgtgatagtgtttggac 240


Query: 309 atttattttagaaaatgcacaatttaaaacagaagcaaatgaaattgtcaaggttgatag 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atttattttagaaaatgcacaatttaaaacagaagcaaatgaaattgtcaaggttgatag 300


Query: 369 agttaaaattgtagcttgtgatgccaacgttcaagatgctcctccaccaaaataagtttt 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agttaaaattgtagcttgtgatgccaacgttcaagatgctcctccaccaaaataagtttt 360


Query: 429 aaaattcc 436
||||||||
Sbjct: 361 aaaattcc 368

Score = 159 bits (80), Expect(3) = 0.0
Identities = 83/84 (98%)
Strand = Plus / Plus


Query: 482 caatactataatgaattcaactttatcataacaaatgcattaaaattttaataatatctt 541
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 414 caatactataatgaattcaactttatcataacaactgcattaaaattttaataatatctt 473


Query: 542 acataacaaatctctttttgcgag 565
||||||||||||||||||||||||
Sbjct: 474 acataacaaatctctttttgcgag 497

Score = 52.0 bits (26), Expect(3) = 0.0
Identities = 26/26 (100%)
Strand = Plus / Plus


Query: 448 cttttaattagcttcaaaaacaaatc 473
||||||||||||||||||||||||||
Sbjct: 380 cttttaattagcttcaaaaacaaatc 405

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 753,002,305
Number of extensions: 47707280
Number of successful extensions: 4070362
Number of sequences better than 10.0: 196
Length of query: 765
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 741
Effective length of database: 102,084,959,077
Effective search space: 75644954676057
Effective search space used: 75644954676057
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 8. 1
Homology vs Protein
Query= Contig-U05113-1 (Contig-U05113-1Q) /CSM_Contig/Contig-U05113-1Q.Seq.d
(765 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q54ND1) RecName: Full=Transcription initiation factor IIA subun... 232 9e-60
(Q90YG6) RecName: Full=Transcription initiation factor IIA subun... 115 2e-24
BT051411_1(BT051411|pid:none) Medicago truncatula clone MTYF1_F2... 115 2e-24
BT075240_1(BT075240|pid:none) Osmerus mordax clone omor-eva-507-... 114 3e-24
BC095322_1(BC095322|pid:none) Danio rerio zgc:110584, mRNA (cDNA... 114 3e-24
BT078954_1(BT078954|pid:none) Esox lucius clone eluc-evq-522-279... 114 3e-24
AB264606_1(AB264606|pid:none) Gallus gallus GTF2A2 mRNA for gene... 114 4e-24
DQ213326_1(DQ213326|pid:none) Taeniopygia guttata clone 0062P000... 114 4e-24
DQ443349_1(DQ443349|pid:none) Bombyx mori transcription initiati... 113 6e-24
EF083868_1(EF083868|pid:none) Picea sitchensis clone WS0273_O16 ... 113 8e-24
BT050080_1(BT050080|pid:none) Salmo salar clone ssal-sjb-006-378... 113 8e-24
AF424778_1(AF424778|pid:none) Xenopus laevis transcription facto... 112 1e-23
(Q9IA78) RecName: Full=Transcription initiation factor IIA subun... 112 1e-23
AK312015_1(AK312015|pid:none) Homo sapiens cDNA, FLJ92290, highl... 112 2e-23
(A2XZI2) RecName: Full=Transcription initiation factor IIA subun... 112 2e-23
(Q39236) RecName: Full=Transcription initiation factor IIA subun... 112 2e-23
AY643716_1(AY643716|pid:none) Oryza sativa (indica cultivar-grou... 111 2e-23
AM111318_1(AM111318|pid:none) Plantago major partial mRNA for tr... 111 2e-23
FN392319_889(FN392319|pid:none) Pichia pastoris GS115 chromosome... 111 3e-23
EF577597_1(EF577597|pid:none) Oryza australiensis IRGC:seed acce... 111 3e-23
BT076691_1(BT076691|pid:none) Caligus rogercresseyi clone crog-e... 110 5e-23
BT075938_1(BT075938|pid:none) Caligus rogercresseyi clone crog-e... 110 5e-23
(P52656) RecName: Full=Transcription initiation factor IIA subun... 109 8e-23
AM270347_31(AM270347|pid:none) Aspergillus niger contig An15c020... 109 1e-22
AP003277_1(AP003277|pid:none) Oryza sativa Japonica Group genomi... 109 1e-22
BT080264_1(BT080264|pid:none) Caligus clemensi clone ccle-evs-50... 108 2e-22
BT080809_1(BT080809|pid:none) Caligus clemensi clone ccle-evs-51... 107 5e-22
CP001574_400(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 103 6e-21
CR382139_107(CR382139|pid:none) Debaryomyces hansenii strain CBS... 100 4e-20
EU583815_1(EU583815|pid:none) Chikusichloa aquatica isolate 5 TF... 100 5e-20
EU583820_1(EU583820|pid:none) Ehrharta erecta isolate 5 TFIIAgam... 100 7e-20
EU583821_1(EU583821|pid:none) Cyperus rotundus TFIIAgamma (TFIIA... 99 1e-19
EU583814_1(EU583814|pid:none) Leersia perrieri isolate 5 TFIIAga... 99 2e-19
EU583818_1(EU583818|pid:none) Hygroryza aristata isolate 5 TFIIA... 97 7e-19
EU583810_1(EU583810|pid:none) Luziola leiocarpa isolate 1 TFIIAg... 96 1e-18
EU583817_1(EU583817|pid:none) Rhynchoryza subulata isolate 5 TFI... 96 1e-18
EF577603_1(EF577603|pid:none) Oryza officinalis IRGC:seed access... 96 1e-18
EU583812_1(EU583812|pid:none) Phyllostachys aurea isolate 1a TFI... 96 1e-18
EU583811_1(EU583811|pid:none) Ehrharta erecta isolate 1 TFIIAgam... 96 2e-18
EF577604_1(EF577604|pid:none) Oryza australiensis IRGC:seed acce... 96 2e-18
EF577601_1(EF577601|pid:none) Oryza rufipogon IRGC:seed accessio... 96 2e-18
AE016815_282(AE016815|pid:none) Ashbya gossypii (= Eremothecium ... 96 2e-18
EF577605_1(EF577605|pid:none) Oryza brachyantha IRGC:seed access... 96 2e-18
CR382123_553(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 94 5e-18
EF577602_1(EF577602|pid:none) Oryza punctata IRGC:seed accession... 94 6e-18
EU583813_1(EU583813|pid:none) Phyllostachys aurea isolate 1b TFI... 94 6e-18
CU928181_253(CU928181|pid:none) Zygosaccharomyces rouxii strain ... 92 2e-17
(Q9NEX2) RecName: Full=Transcription initiation factor IIA subun... 92 2e-17
EU583807_1(EU583807|pid:none) Potamophila parviflora isolate 1 T... 91 3e-17
EU583808_1(EU583808|pid:none) Rhynchoryza subulata isolate 1 TFI... 91 3e-17
EU583806_1(EU583806|pid:none) Chikusichloa aquatica isolate 1 TF... 91 3e-17
X98862_1(X98862|pid:none) A.thaliana mRNA for small subunit of T... 90 9e-17
EF147321_1(EF147321|pid:none) Populus trichocarpa clone WS0122_J... 87 4e-16
(Q9BIB4) RecName: Full=Transcription initiation factor IIA small... 86 1e-15
T15332(T15332)hypothetical protein B0336.5 - Caenorhabditis eleg... 86 1e-15
EU441868_1(EU441868|pid:none) Xenopus borealis clone TFIIAg.a tr... 82 2e-14
EU973681_1(EU973681|pid:none) Zea mays clone 404389 unknown mRNA. 73 9e-12
CP000883_131(CP000883|pid:none) Hemiselmis andersenii chromosome... 66 1e-09
BC028551_1(BC028551|pid:none) Mus musculus general transcription... 54 4e-06
DQ158856_29(DQ158856|pid:none) Bigelowiella natans nucleomorph c... 47 7e-04
EF069843_1(EF069843|pid:none) Oryza sativa (indica cultivar-grou... 46 0.001
EU810256_1(EU810256|pid:none) Gymnochlora stellata transcription... 39 0.14
DQ901774_1(DQ901774|pid:none) Oryza officinalis strain IRGC seed... 39 0.14
EU643484_5(EU643484|pid:none) Adineta vaga clone Av198_A basic r... 35 2.0
AM398681_1331(AM398681|pid:none) Flavobacterium psychrophilum JI... 34 4.5
AJ786604_1(AJ786604|pid:none) Plasmodium reichenowi msp1 gene fo... 34 5.9
CP000382_1844(CP000382|pid:none) Clostridium novyi NT, complete ... 33 7.7
CP001399_2016(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 33 7.7

>(Q54ND1) RecName: Full=Transcription initiation factor IIA subunit
2; AltName: Full=General transcription factor IIA
subunit 2; AltName: Full=Transcription initiation factor
IIA gamma chain; Short=TFIIA-gamma;
Length = 115

Score = 232 bits (592), Expect = 9e-60
Identities = 115/115 (100%), Positives = 115/115 (100%)
Frame = +1

Query: 76 MANKQNYYELYRKSTIGEALTDTLEELLINQYISNSLYQKILTQFDKTINEALSNTVKAK 255
MANKQNYYELYRKSTIGEALTDTLEELLINQYISNSLYQKILTQFDKTINEALSNTVKAK
Sbjct: 1 MANKQNYYELYRKSTIGEALTDTLEELLINQYISNSLYQKILTQFDKTINEALSNTVKAK 60

Query: 256 TTFKGSLHTYRFCDSVWTFILENAQFKTEANEIVKVDRVKIVACDANVQDAPPPK 420
TTFKGSLHTYRFCDSVWTFILENAQFKTEANEIVKVDRVKIVACDANVQDAPPPK
Sbjct: 61 TTFKGSLHTYRFCDSVWTFILENAQFKTEANEIVKVDRVKIVACDANVQDAPPPK 115

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 941,289,617
Number of extensions: 15582911
Number of successful extensions: 31420
Number of sequences better than 10.0: 68
Number of HSP's gapped: 31360
Number of HSP's successfully gapped: 68
Length of query: 255
Length of database: 1,061,185,681
Length adjustment: 126
Effective length of query: 129
Effective length of database: 649,361,233
Effective search space: 83767599057
Effective search space used: 83767599057
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.86 gvh: 0.29 alm: 0.51 top: 0.33 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
8.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for Contig-U05113-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0