Contig-U01103-1
Contig ID Contig-U01103-1
Contig update 2001. 8.29
Contig sequence
>Contig-U01103-1 (Contig-U01103-1Q) /CSM_Contig/Contig-U01103-1Q.Seq.d
GAAGATATTACATCGGAAGATTCAACAGAGAAATGTGAAGAGTTTTCAAA
TTATACATTCATTTCAACATCAGAGACGATTTACTCTTATACCGATTTGG
TGCAATCCAATATCTATATTGTACAATTCTCAAATTTCGTATTGATCTTT
CATGAACATCCATTGGACTCAATTGAAGATGTATTAAACTCTTTTCGTTA
TTTAGAGGGTGGGGTTTTAGCATCATCCCAATGGATTGTATCAACATTTT
TCGAATCATTCAATGAAATCTATTCAGAATTATCCGATCAATTAATGAAA
GAGGTTAATGTTTTAGATGAATTCACACTATCAGAAGATGCTGCTCATCA
TTCTGAACTATATGTTCGTTTAGGTAAAGCAACTAGAAAATCTACAAATT
TATTATCTTGGATTTTTATTAAAAATGATATGTTATCATCATTAATAAGA
TTAACAATTAATAAAGAAGATAGAATTCATCCTTAGTAATATTAAAGATA
GAACTGTTAGATTAAAACAAAAGATAAAGATGGCAGAAGAGTTATTGGAG
AATATTAGTAATATTTATATTTCAAAGGTATCATTGGTATTGAATGAAGA
ATCTCATGCATTAAATATAAGTATGGGTAAATTTTCATCATTATCAGTGA
TTTTCATGCCATTGAATTTAATTGCTGGTATATTTGGTATGAATGTTCAT
TTACCAGGTGAAGCAGATCCAGATTCAACTGATGAAAGTTCTTTTTCAGG
TTTCATTTGTTTAATGATGATTATGGTTGCAATAGGCGCTATTTTAACTT
TATTCTTTAAAAAAACTTGATTGGTTATAAATTAAAAGTAATAAAATTAA
TTAATTATTAAAAAAA

Gap no gap
Contig length 866
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 228768
End point 229634
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U01103
List of clone(s)

est1=VSF645E,1,836
est2=SLA718Z,650,867
Translated Amino Acid sequence
EDITSEDSTEKCEEFSNYTFISTSETIYSYTDLVQSNIYIVQFSNFVLIFHEHPLDSIED
VLNSFRYLEGGVLASSQWIVSTFFESFNEIYSELSDQLMKEVNVLDEFTLSEDAAHHSEL
YVRLGKATRKSTNLLSWIFIKNDMLSSLIRLTINKEDRIHP**y*r*nc*iktkdkdgrr
vigey**ylyfkgiigie*riscikykyg*ifiiisdfhaiefncwyiwyecsftr*srs
rfn**kfffrfhlfnddygcnrryfnfil*knligyklkvikliny*k


Translated Amino Acid sequence (All Frames)
Frame A:
EDITSEDSTEKCEEFSNYTFISTSETIYSYTDLVQSNIYIVQFSNFVLIFHEHPLDSIED
VLNSFRYLEGGVLASSQWIVSTFFESFNEIYSELSDQLMKEVNVLDEFTLSEDAAHHSEL
YVRLGKATRKSTNLLSWIFIKNDMLSSLIRLTINKEDRIHP**y*r*nc*iktkdkdgrr
vigey**ylyfkgiigie*riscikykyg*ifiiisdfhaiefncwyiwyecsftr*srs
rfn**kfffrfhlfnddygcnrryfnfil*knligyklkvikliny*k


Frame B:
kilhrkiqqrnvksfqiihsfqhqrrftlipiwcnpisilynsqisy*sfmnihwtqlkm
y*tlfvi*rvgf*hhpnglyqhfsnhsmksiqnypin**krlmf*mnshyqkmlliilny
mfv*vkqlenlqiyylgfllkmicyhh**d*qlikkiefilsnikdrtvrlkqkikmaee
llenisniyiskvslvlneeshalnismgkfsslsvifmplnliagifgmnvhlpgeadp
dstdessfsgficlmmimvaigailtlffkkt*lvin*k**n*liikk


Frame C:
ryyigrfnrem*rvfklyihfnirddlllyrfgaiqylyctilkfridls*tsigln*rc
iklfslfrgwgfsiipmdcinifriiq*nlfriirsinerg*cfr*ihtirrccssf*ti
csfr*sn*kiykfiildfy*k*yviiinkinn**rr*nsslvilkielld*nkr*rwqks
ywrilvififqryhwy*mknlmh*i*vwvnfhhyq*fsch*i*llvylv*mfiyqvkqiq
iqlmkvlfqvsfv***lwlq*alf*lyslkkldwl*iksnkin*llkk


own update 2004. 6. 7
Homology vs CSM-cDNA
Query= Contig-U01103-1 (Contig-U01103-1Q)
/CSM_Contig/Contig-U01103-1Q.Seq.d
(866 letters)

Database: CSM
8361 sequences; 7,895,291 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U01103-1 (Contig-U01103-1Q) /CSM_Contig/Conti... 1598 0.0
Contig-U13873-1 (Contig-U13873-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U11516-1 (Contig-U11516-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U11248-1 (Contig-U11248-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U02933-1 (Contig-U02933-1Q) /CSM_Contig/Conti... 36 0.085
Contig-U12714-1 (Contig-U12714-1Q) /CSM_Contig/Conti... 34 0.34
Contig-U12402-1 (Contig-U12402-1Q) /CSM_Contig/Conti... 34 0.34
Contig-U11994-1 (Contig-U11994-1Q) /CSM_Contig/Conti... 34 0.34
Contig-U11858-1 (Contig-U11858-1Q) /CSM_Contig/Conti... 34 0.34
Contig-U11481-1 (Contig-U11481-1Q) /CSM_Contig/Conti... 34 0.34

>Contig-U01103-1 (Contig-U01103-1Q) /CSM_Contig/Contig-U01103-1Q.Seq.d
Length = 866

Score = 1598 bits (806), Expect = 0.0
Identities = 806/806 (100%)
Strand = Plus / Plus


Query: 1 gaagatattacatcggaagattcaacagagaaatgtgaagagttttcaaattatacattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagatattacatcggaagattcaacagagaaatgtgaagagttttcaaattatacattc 60


Query: 61 atttcaacatcagagacgatttactcttataccgatttggtgcaatccaatatctatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atttcaacatcagagacgatttactcttataccgatttggtgcaatccaatatctatatt 120


Query: 121 gtacaattctcaaatttcgtattgatctttcatgaacatccattggactcaattgaagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtacaattctcaaatttcgtattgatctttcatgaacatccattggactcaattgaagat 180


Query: 181 gtattaaactcttttcgttatttagagggtggggttttagcatcatcccaatggattgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtattaaactcttttcgttatttagagggtggggttttagcatcatcccaatggattgta 240


Query: 241 tcaacatttttcgaatcattcaatgaaatctattcagaattatccgatcaattaatgaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcaacatttttcgaatcattcaatgaaatctattcagaattatccgatcaattaatgaaa 300


Query: 301 gaggttaatgttttagatgaattcacactatcagaagatgctgctcatcattctgaacta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaggttaatgttttagatgaattcacactatcagaagatgctgctcatcattctgaacta 360


Query: 361 tatgttcgtttaggtaaagcaactagaaaatctacaaatttattatcttggatttttatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tatgttcgtttaggtaaagcaactagaaaatctacaaatttattatcttggatttttatt 420


Query: 421 aaaaatgatatgttatcatcattaataagattaacaattaataaagaagatagaattcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaaaatgatatgttatcatcattaataagattaacaattaataaagaagatagaattcat 480


Query: 481 ccttagtaatattaaagatagaactgttagattaaaacaaaagataaagatggcagaaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ccttagtaatattaaagatagaactgttagattaaaacaaaagataaagatggcagaaga 540


Query: 541 gttattggagaatattagtaatatttatatttcaaaggtatcattggtattgaatgaaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gttattggagaatattagtaatatttatatttcaaaggtatcattggtattgaatgaaga 600


Query: 601 atctcatgcattaaatataagtatgggtaaattttcatcattatcagtgattttcatgcc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 atctcatgcattaaatataagtatgggtaaattttcatcattatcagtgattttcatgcc 660


Query: 661 attgaatttaattgctggtatatttggtatgaatgttcatttaccaggtgaagcagatcc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 attgaatttaattgctggtatatttggtatgaatgttcatttaccaggtgaagcagatcc 720


Query: 721 agattcaactgatgaaagttctttttcaggtttcatttgtttaatgatgattatggttgc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 agattcaactgatgaaagttctttttcaggtttcatttgtttaatgatgattatggttgc 780


Query: 781 aataggcgctattttaactttattct 806
||||||||||||||||||||||||||
Sbjct: 781 aataggcgctattttaactttattct 806


>Contig-U13873-1 (Contig-U13873-1Q) /CSM_Contig/Contig-U13873-1Q.Seq.d
Length = 1474

Score = 38.2 bits (19), Expect = 0.022
Identities = 19/19 (100%)
Strand = Plus / Minus


Query: 412 atttttattaaaaatgata 430
|||||||||||||||||||
Sbjct: 1394 atttttattaaaaatgata 1376


>Contig-U11516-1 (Contig-U11516-1Q) /CSM_Contig/Contig-U11516-1Q.Seq.d
Length = 1970

Score = 38.2 bits (19), Expect = 0.022
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 258 attcaatgaaatctattca 276
|||||||||||||||||||
Sbjct: 1237 attcaatgaaatctattca 1255


Database: CSM
Posted date: Jun 7, 2004 8:33 AM
Number of letters in database: 7,895,291
Number of sequences in database: 8361

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,948
Number of Sequences: 8361
Number of extensions: 16948
Number of successful extensions: 1838
Number of sequences better than 10.0: 189
length of query: 866
length of database: 7,895,291
effective HSP length: 16
effective length of query: 850
effective length of database: 7,761,515
effective search space: 6597287750
effective search space used: 6597287750
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.22
Homology vs DNA
Query= Contig-U01103-1 (Contig-U01103-1Q) /CSM_Contig/Contig-U01103-1Q.Seq.d
(866 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU265548) Dictyostelium discoideum vegetative cDNA clone:VS... 1144 0.0 1
(AU265549) Dictyostelium discoideum vegetative cDNA clone:VS... 644 0.0 2
(AU033395) Dictyostelium discoideum slug cDNA, clone SLA718. 311 2e-80 1
(AQ449615) 500002E09.x2 CpIOWAM13mp18gDNA1 Cryptosporidium p... 52 0.036 1
(AC201647) Strongylocentrotus purpuratus clone R3-4009D19, W... 50 0.14 1
(AG970969) Drosophila simulans DNA, clone: DSM1-009M15.F.fa,... 36 0.35 2
(AG978620) Drosophila simulans DNA, clone: DSM1-022O10.F.fa,... 36 0.36 2
(AL356295) Human DNA sequence from clone RP11-768P11 on chro... 48 0.57 1
(DU681388) Bst013924 lambda03 Boechera stricta genomic clone... 48 0.57 1
(CU847792) A BAC library has been constructed from PN40024 g... 48 0.57 1
(CT954229) M.truncatula DNA sequence from clone MTH2-180D15 ... 36 1.2 6
(AC157969) Strongylocentrotus purpuratus clone R3-4002I6, WO... 34 1.3 8
(FI267977) CccaBb038-H3JF CccABb Cajanus cajan genomic clone... 34 1.5 2
(FI260421) CccaBb035-J15JF CccABb Cajanus cajan genomic clon... 34 1.5 2
(AL445233) Human DNA sequence *** SEQUENCING CANCELLED *** f... 38 2.0 4
(AC091074) Homo sapiens chromosome 15 clone RP11-640I2 map 1... 46 2.2 1
(AC023299) Homo sapiens chromosome 15 clone RP11-640I2 map 1... 46 2.2 1
(EJ641262) 1093011907895 Global-Ocean-Sampling_GS-29-01-01-1... 46 2.2 1
(EJ627408) 1092963214196 Global-Ocean-Sampling_GS-29-01-01-1... 46 2.2 1
(EI474658) PV_GBa0084K09.r PV_GBa Phaseolus vulgaris genomic... 46 2.2 1
(DX540300) GH_MBb0049C06f GH_MBb Gossypium hirsutum genomic ... 46 2.2 1
(CU290733) Equus caballus GSS, BAC clone CH241-453O21, T7 en... 46 2.2 1
(DC957678) Physcomitrella patens subsp. patens cDNA, clone:p... 46 2.2 1
(DC952848) Physcomitrella patens subsp. patens cDNA, clone:p... 46 2.2 1
(BJ955331) Physcomitrella patens subsp. patens cDNA clone:pp... 46 2.2 1
(BJ170640) Physcomitrella patens subsp. patens cDNA clone:pp... 46 2.2 1
(FE700415) Pv053C_M13R_H05.ab1 Phaseolus vulgaris cv Early g... 46 2.2 1
(FE700414) Pv051B_M13R_G12.ab1 Phaseolus vulgaris cv Early g... 46 2.2 1
(FE700412) Pv027B_M13R_D01.ab1 Phaseolus vulgaris cv Early g... 46 2.2 1
(FE700411) Pv053C_M13F_H05.ab1 Phaseolus vulgaris cv Early g... 46 2.2 1
(FC371965) CAYY7855.rev CAYY Physcomitrella patens subsp. pa... 46 2.2 1
(FC352619) CAYY27756.rev CAYY Physcomitrella patens subsp. p... 46 2.2 1
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 32 2.6 15
(AL035476) Plasmodium falciparum MAL4P3. 36 3.4 8
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 32 3.7 14
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com... 32 3.7 14
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 34 3.7 8
(AL672222) Mouse DNA sequence from clone RP23-330A15 on chro... 36 3.8 9
(AC135638) Mus musculus BAC clone RP23-330K10 from chromosom... 32 4.3 2
(BX119990) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 34 4.3 8
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 32 4.4 19
(CK383165) lai17d06.y1 Gastric Epithelial Progenitor 2 Mus m... 42 4.6 2
(AC187018) Canis Familiaris chromosome 6, clone XX-115M18, c... 38 4.6 7
(EC822692) SME00007948 esmbsro2 Sawyeria marylandensis cDNA,... 36 4.7 2
(BX119973) Zebrafish DNA sequence from clone RP71-77D7 in li... 36 4.7 6
(FC804111) CBGC6237.fwd CBGC Lottia gigantea 15h 18h embryos... 34 5.2 2
(AM432264) Vitis vinifera contig VV78X155498.4, whole genome... 32 5.3 2
(FC804110) CBGC6237.rev CBGC Lottia gigantea 15h 18h embryos... 34 5.3 2
(DD010736) Diagnosis of known genetic Parameters within the ... 36 5.4 9
(AY743238) Plasmodium vivax VCG-1 merozoite surface protein ... 32 5.6 2
(AC141162) Rattus norvegicus clone CH230-464I14, *** SEQUENC... 44 5.6 2
(CV638518) EST917271 Field isolate cDNA library Plasmodium v... 32 5.7 2
(CV644672) EST923425 Field isolate cDNA library Plasmodium v... 32 5.7 2
(AZ574093) 324PvG05 Pv MBN #30 Plasmodium vivax genomic 3', ... 32 5.8 2
(EJ208774) 1092345350836 Global-Ocean-Sampling_GS-27-01-01-1... 32 5.8 2
(CV646324) EST925077 Field isolate cDNA library Plasmodium v... 32 5.8 2
(CV646381) EST925134 Field isolate cDNA library Plasmodium v... 32 5.8 2
(CV646992) EST925745 Field isolate cDNA library Plasmodium v... 32 5.8 2
(AE017263) Mesoplasma florum L1 complete genome. 34 5.9 14
(CV636098) EST914851 Field isolate cDNA library Plasmodium v... 32 5.9 2
(EJ390678) 1092963918431 Global-Ocean-Sampling_GS-28-01-01-1... 42 6.1 2
(CL716335) OR_BBa0042O10.f OR_BBa Oryza nivara genomic clone... 34 6.1 3
(FC612602) CAXS6174.rev CAXS Lottia gigantea from head, foot... 34 6.2 2
(FC612603) CAXS6174.fwd CAXS Lottia gigantea from head, foot... 34 6.3 2
(AC221414) Bos taurus clone CH240-406J7, WORKING DRAFT SEQUE... 44 6.4 2
(AZ669921) ENTMU45TF Entamoeba histolytica Sheared DNA Entam... 36 6.4 2
(AC112113) Rattus norvegicus clone CH230-158F4, *** SEQUENCI... 40 7.1 3
(AC151811) Dasypus novemcinctus clone VMRC5-24C12, WORKING D... 36 7.2 4
(AC023567) Homo sapiens clone RP11-791E3, WORKING DRAFT SEQU... 34 7.7 4
(AL118509) Human DNA sequence from clone RP4-770C23 on chrom... 40 7.8 2
(AC012581) Homo sapiens clone RP11-2P9, WORKING DRAFT SEQUEN... 34 8.2 9
(CT432240) Sus scrofa genomic clone CH242-507H9, genomic sur... 32 8.7 3
(CU459136) Zebrafish DNA sequence from clone DKEYP-1D11 in l... 44 8.8 1
(AL928550) Mouse DNA sequence from clone RP23-272I15 on chro... 44 8.8 1
(AC163672) Mus musculus BAC clone RP23-23B15 from chromosome... 44 8.8 1
(U55856) Caenorhabditis elegans cosmid F31E8, complete seque... 44 8.8 1
(AL359637) Human DNA sequence from clone RP11-484M8 on chrom... 44 8.8 1
(AC091996) Homo sapiens chromosome 5 clone RP11-96G10, compl... 44 8.8 1
(AC068798) Homo sapiens 12 BAC RP11-127J23 (Roswell Park Can... 44 8.8 1
(AC142057) Rattus norvegicus clone CH230-35H9, *** SEQUENCIN... 44 8.8 1
(AC126216) Rattus norvegicus clone CH230-315E24, *** SEQUENC... 44 8.8 1
(AC107327) Rattus norvegicus clone CH230-130H5, *** SEQUENCI... 44 8.8 1
(CU930027) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.8 1
(CU856389) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.8 1
(AC232444) Brassica rapa subsp. pekinensis clone KBrB006C05,... 44 8.8 1
(AC220839) Bos taurus clone CH240-343J5, WORKING DRAFT SEQUE... 44 8.8 1
(AC189629) Brassica rapa subsp. pekinensis clone KBrS003F17,... 44 8.8 1
(AC180448) Strongylocentrotus purpuratus clone R3-3103A12, W... 44 8.8 1
(AC179409) Strongylocentrotus purpuratus clone R3-1101C16, W... 44 8.8 1
(AC177725) Strongylocentrotus purpuratus clone R3-1008P11, W... 44 8.8 1
(AC176343) Strongylocentrotus purpuratus clone R3-3054A19, W... 44 8.8 1
(AC172972) Bos taurus clone CH240-271E1, WORKING DRAFT SEQUE... 44 8.8 1
(AC168556) Strongylocentrotus purpuratus clone R3-3091F9, WO... 44 8.8 1
(BH303363) CH230-37B14.TJ CHORI-230 Segment 1 Rattus norvegi... 44 8.8 1
(FH948539) CHO_OF6748xi08f1.ab1 CHO_OF6 Nicotiana tabacum ge... 44 8.8 1
(FH450768) CHO_OF4715xa19r1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 8.8 1
(EI800239) MUGQ_CH252P246C22T7_CN495_093 CHORI-252 Vervet Mo... 44 8.8 1
(AJ562031) Cryptosporidium parvum GSS, PAC clone pica_0006_d... 44 8.8 1
(CW204429) 104_632_11186538_148_36923_073 Sorghum methylatio... 44 8.8 1
(CW195694) 104_619_11180774_116_36808_057 Sorghum methylatio... 44 8.8 1
(CD142840) MG1-0080M-D275-H03-U.B MG1-0080 Schistosoma manso... 44 8.8 1
(BI323621) kt65b11.y1 Strongyloides ratti L2 pAMP1 v1 Chiape... 44 8.8 1
(FC817190) Sr_pAMT7_08d07_T7 S. ratti mixed stage pAMP Stron... 44 8.8 1
(EX852594) CBNC9663.rev CBNC Phycomyces blakesleeanus NRRL15... 44 8.8 1
(EX849283) CBNC7842.rev CBNC Phycomyces blakesleeanus NRRL15... 44 8.8 1
(EX848250) CBNC7304.rev CBNC Phycomyces blakesleeanus NRRL15... 44 8.8 1
(EX813991) CBNA3803.rev CBNA Phycomyces blakesleeanus NRRL15... 44 8.8 1
(EU449489) Uncultured microorganism clone DC23 hypothetical ... 44 8.8 1
(AC005034) Homo sapiens BAC clone RP11-342K6 from 2, complet... 36 9.3 5
(CU655869) H.numata DNA sequence from clone AEHN-38G4. 36 9.9 5

>(AU265548) Dictyostelium discoideum vegetative cDNA clone:VSF645,
5' end single read.
Length = 577

Score = 1144 bits (577), Expect = 0.0
Identities = 577/577 (100%)
Strand = Plus / Plus


Query: 1 gaagatattacatcggaagattcaacagagaaatgtgaagagttttcaaattatacattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagatattacatcggaagattcaacagagaaatgtgaagagttttcaaattatacattc 60


Query: 61 atttcaacatcagagacgatttactcttataccgatttggtgcaatccaatatctatatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atttcaacatcagagacgatttactcttataccgatttggtgcaatccaatatctatatt 120


Query: 121 gtacaattctcaaatttcgtattgatctttcatgaacatccattggactcaattgaagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtacaattctcaaatttcgtattgatctttcatgaacatccattggactcaattgaagat 180


Query: 181 gtattaaactcttttcgttatttagagggtggggttttagcatcatcccaatggattgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtattaaactcttttcgttatttagagggtggggttttagcatcatcccaatggattgta 240


Query: 241 tcaacatttttcgaatcattcaatgaaatctattcagaattatccgatcaattaatgaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcaacatttttcgaatcattcaatgaaatctattcagaattatccgatcaattaatgaaa 300


Query: 301 gaggttaatgttttagatgaattcacactatcagaagatgctgctcatcattctgaacta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaggttaatgttttagatgaattcacactatcagaagatgctgctcatcattctgaacta 360


Query: 361 tatgttcgtttaggtaaagcaactagaaaatctacaaatttattatcttggatttttatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tatgttcgtttaggtaaagcaactagaaaatctacaaatttattatcttggatttttatt 420


Query: 421 aaaaatgatatgttatcatcattaataagattaacaattaataaagaagatagaattcat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaaaatgatatgttatcatcattaataagattaacaattaataaagaagatagaattcat 480


Query: 481 ccttagtaatattaaagatagaactgttagattaaaacaaaagataaagatggcagaaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ccttagtaatattaaagatagaactgttagattaaaacaaaagataaagatggcagaaga 540


Query: 541 gttattggagaatattagtaatatttatatttcaaag 577
|||||||||||||||||||||||||||||||||||||
Sbjct: 541 gttattggagaatattagtaatatttatatttcaaag 577

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,092,044,381
Number of extensions: 66862787
Number of successful extensions: 5650407
Number of sequences better than 10.0: 111
Length of query: 866
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 842
Effective length of database: 99,340,224,878
Effective search space: 83644469347276
Effective search space used: 83644469347276
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.14
Homology vs Protein
Query= Contig-U01103-1 (Contig-U01103-1Q) /CSM_Contig/Contig-U01103-1Q.Seq.d
(866 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AE017347_93(AE017347|pid:none) Cryptococcus neoformans var. neof... 65 2e-22
(O13779) RecName: Full=Putative metal ion transporter C17A12.14;... 61 1e-18
T37833(T37833) probable membrane protein - fission yeast (Schiz... 61 1e-18
CU928175_110(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 62 6e-18
CR382131_14(CR382131|pid:none) Yarrowia lipolytica strain CLIB12... 60 2e-17
FN392319_865(FN392319|pid:none) Pichia pastoris GS115 chromosome... 54 5e-15
AM920428_475(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 54 8e-15
CP000969_370(CP000969|pid:none) Thermotoga sp. RQ2, complete gen... 50 2e-12
CP000702_359(CP000702|pid:none) Thermotoga petrophila RKU-1, com... 50 2e-12
AM270397_53(AM270397|pid:none) Aspergillus niger contig An18c004... 54 6e-11
CU633900_741(CU633900|pid:none) Podospora anserina genomic DNA c... 55 1e-10
FN392320_1054(FN392320|pid:none) Pichia pastoris GS115 chromosom... 54 3e-10
AM920435_88(AM920435|pid:none) Penicillium chrysogenum Wisconsin... 49 3e-10
CR382130_11(CR382130|pid:none) Yarrowia lipolytica strain CLIB12... 65 2e-09
FJ168549_5(FJ168549|pid:none) Bodo saltans clone fosmid 16K02, c... 54 1e-08
AM920427_1444(AM920427|pid:none) Penicillium chrysogenum Wiscons... 50 2e-08
CR382125_316(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 62 2e-08
CP000498_14(CP000498|pid:none) Pichia stipitis CBS 6054 chromoso... 62 3e-08
CP000502_65(CP000502|pid:none) Pichia stipitis CBS 6054 chromoso... 61 6e-08
BA000022_2776(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,... 60 9e-08
CP000879_1072(CP000879|pid:none) Petrotoga mobilis SJ95, complet... 60 1e-07
CP001186_4106(CP001186|pid:none) Bacillus cereus G9842, complete... 60 1e-07
CP000903_3814(CP000903|pid:none) Bacillus weihenstephanensis KBA... 59 2e-07
CU928168_362(CU928168|pid:none) Kluyveromyces thermotolerans str... 59 2e-07
AE017194_4118(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 59 2e-07
CP000001_3802(CP000001|pid:none) Bacillus cereus E33L, complete ... 59 2e-07
AE016877_3893(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 59 2e-07
CP000485_3509(CP000485|pid:none) Bacillus thuringiensis str. Al ... 59 2e-07
AE016879_3967(AE016879|pid:none) Bacillus anthracis str. Ames, c... 59 2e-07
AE016817_230(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 58 4e-07
AM502243_113(AM502243|pid:none) Leishmania infantum chromosome 25. 58 4e-07
CR382126_1145(CR382126|pid:none) Kluyveromyces lactis strain NRR... 58 5e-07
AM270103_7(AM270103|pid:none) Aspergillus niger contig An05c0030... 57 8e-07
(P35724) RecName: Full=Manganese resistance protein MNR2; &S378... 57 8e-07
CU928178_28(CU928178|pid:none) Zygosaccharomyces rouxii strain C... 57 1e-06
AP007171_763(AP007171|pid:none) Aspergillus oryzae RIB40 genomic... 56 1e-06
AX046919_1(AX046919|pid:none) Sequence 3 from Patent WO0068420. 55 3e-06
U41293_1(U41293|pid:none) Saccharomyces cerevisiae putative seri... 55 3e-06
CT005264_112(CT005264|pid:none) Leishmania major strain Friedlin... 55 3e-06
CR382137_459(CR382137|pid:none) Debaryomyces hansenii strain CBS... 55 3e-06
CP001124_265(CP001124|pid:none) Geobacter bemidjiensis Bem, comp... 54 5e-06
CR380959_576(CR380959|pid:none) Candida glabrata strain CBS138 c... 54 5e-06
CP000557_890(CP000557|pid:none) Geobacillus thermodenitrificans ... 54 9e-06
AE008384_2640(AE008384|pid:none) Methanosarcina mazei strain Goe... 53 2e-05
AP007150_572(AP007150|pid:none) Aspergillus oryzae RIB40 genomic... 36 2e-05
CP000859_3005(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 52 3e-05
AM920431_735(AM920431|pid:none) Penicillium chrysogenum Wisconsi... 43 3e-05
CR628337_2804(CR628337|pid:none) Legionella pneumophila str. Len... 52 3e-05
AE017354_2817(AE017354|pid:none) Legionella pneumophila subsp. p... 52 3e-05
CP000029_1896(CP000029|pid:none) Staphylococcus epidermidis RP62... 51 4e-05
CP000117_793(CP000117|pid:none) Anabaena variabilis ATCC 29413, ... 51 4e-05
BA000043_1037(BA000043|pid:none) Geobacillus kaustophilus HTA426... 51 4e-05
CR382128_194(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 51 4e-05
AE001437_1829(AE001437|pid:none) Clostridium acetobutylicum ATCC... 51 4e-05
CP000100_1369(CP000100|pid:none) Synechococcus elongatus PCC 794... 51 4e-05
AP008231_185(AP008231|pid:none) Synechococcus elongatus PCC 6301... 51 4e-05
CP000148_1176(CP000148|pid:none) Geobacter metallireducens GS-15... 51 6e-05
AG2319(AG2319) hypothetical protein all4110 [imported] - Nostoc ... 51 6e-05
AP008934_555(AP008934|pid:none) Staphylococcus saprophyticus sub... 50 7e-05
CP001110_1099(CP001110|pid:none) Pelodictyon phaeoclathratiforme... 50 7e-05
CP000254_938(CP000254|pid:none) Methanospirillum hungatei JF-1, ... 50 1e-04
AM494962_98(AM494962|pid:none) Leishmania braziliensis chromosom... 50 1e-04
BA000045_1023(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 49 2e-04
CP000916_106(CP000916|pid:none) Thermotoga neapolitana DSM 4359,... 49 2e-04
AC159411_6(AC159411|pid:none) Trypanosoma brucei chromosome 3 cl... 49 2e-04
CP000867_170(CP000867|pid:none) Methanococcus maripaludis C6, co... 49 2e-04
CP001339_1968(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ... 49 2e-04
CP000745_1721(CP000745|pid:none) Methanococcus maripaludis C7, c... 49 3e-04
BX950229_711(BX950229|pid:none) Methanococcus maripaludis strain... 49 3e-04
CP000685_3506(CP000685|pid:none) Flavobacterium johnsoniae UW101... 48 4e-04
CP001291_480(CP001291|pid:none) Cyanothece sp. PCC 7424, complet... 48 4e-04
AP009324_2332(AP009324|pid:none) Staphylococcus aureus subsp. au... 48 4e-04
CP000698_3357(CP000698|pid:none) Geobacter uraniireducens Rf4, c... 48 4e-04
AJ938182_2226(AJ938182|pid:none) Staphylococcus aureus RF122 com... 48 4e-04
AE010300_2792(AE010300|pid:none) Leptospira interrogans serovar ... 48 4e-04
BX842648_271(BX842648|pid:none) Bdellovibrio bacteriovorus compl... 48 5e-04
AP009484_289(AP009484|pid:none) Macrococcus caseolyticus JCSC540... 48 5e-04
AP010904_2028(AP010904|pid:none) Desulfovibrio magneticus RS-1 D... 48 5e-04
CP000103_432(CP000103|pid:none) Nitrosospira multiformis ATCC 25... 47 6e-04
CP000769_2112(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c... 47 6e-04
CP000688_549(CP000688|pid:none) Dehalococcoides sp. BAV1, comple... 47 6e-04
CP001638_854(CP001638|pid:none) Geobacillus sp. WCH70, complete ... 47 8e-04
AP007155_1217(AP007155|pid:none) Aspergillus oryzae RIB40 genomi... 47 0.001
CP000316_242(CP000316|pid:none) Polaromonas sp. JS666, complete ... 47 0.001
CR555306_2549(CR555306|pid:none) Azoarcus sp. EbN1 complete geno... 47 0.001
AP006841_1267(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 47 0.001
CP000142_2888(CP000142|pid:none) Pelobacter carbinolicus DSM 238... 46 0.001
CP001089_2495(CP001089|pid:none) Geobacter lovleyi SZ, complete ... 41 0.002
AE016823_1198(AE016823|pid:none) Leptospira interrogans serovar ... 46 0.002
CP000141_2515(CP000141|pid:none) Carboxydothermus hydrogenoforma... 46 0.002
AP009384_3056(AP009384|pid:none) Azorhizobium caulinodans ORS 57... 46 0.002
CP000562_785(CP000562|pid:none) Methanoculleus marisnigri JR1, c... 46 0.002
CP000383_3604(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 45 0.002
CP000609_856(CP000609|pid:none) Methanococcus maripaludis C5, co... 45 0.002
CP000482_2210(CP000482|pid:none) Pelobacter propionicus DSM 2379... 45 0.002
CP000721_110(CP000721|pid:none) Clostridium beijerinckii NCIMB 8... 45 0.002
AP009552_2531(AP009552|pid:none) Microcystis aeruginosa NIES-843... 45 0.003
CU466930_1707(CU466930|pid:none) Candidatus Cloacamonas acidamin... 45 0.003
CU207366_1724(CU207366|pid:none) Gramella forsetii KT0803 comple... 45 0.004
CP000267_3744(CP000267|pid:none) Rhodoferax ferrireducens T118, ... 45 0.004
CP000934_755(CP000934|pid:none) Cellvibrio japonicus Ueda107, co... 44 0.005
CP000232_262(CP000232|pid:none) Moorella thermoacetica ATCC 3907... 44 0.005
CP000388_2647(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 44 0.005
CP000812_1373(CP000812|pid:none) Thermotoga lettingae TMO, compl... 44 0.005
CP001114_2539(CP001114|pid:none) Deinococcus deserti VCD115, com... 44 0.007
CP001392_255(CP001392|pid:none) Diaphorobacter sp. TPSY, complet... 44 0.007
CP001078_162(CP001078|pid:none) Clostridium botulinum E3 str. Al... 44 0.007
CP000529_189(CP000529|pid:none) Polaromonas naphthalenivorans CJ... 44 0.007
CP000817_4453(CP000817|pid:none) Lysinibacillus sphaericus C3-41... 44 0.007
AM494965_212(AM494965|pid:none) Leishmania braziliensis chromoso... 44 0.007
CP001056_165(CP001056|pid:none) Clostridium botulinum B str. Ekl... 44 0.009
CP000884_378(CP000884|pid:none) Delftia acidovorans SPH-1, compl... 43 0.012
CP000562_783(CP000562|pid:none) Methanoculleus marisnigri JR1, c... 43 0.012
CP000607_1323(CP000607|pid:none) Chlorobium phaeovibrioides DSM ... 43 0.012
AC123898_3(AC123898|pid:none) Medicago truncatula clone mth2-31m... 43 0.012
CP000749_4090(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 43 0.012
BA000012_4306(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 43 0.012
CP000090_3128(CP000090|pid:none) Ralstonia eutropha JMP134 chrom... 43 0.012
CP001338_1987(CP001338|pid:none) Candidatus Methanosphaerula pal... 43 0.012
AP008955_4831(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 43 0.016
CP000140_1210(CP000140|pid:none) Parabacteroides distasonis ATCC... 43 0.016
AY728386_1(AY728386|pid:none) Cyanothece sp. ATCC 51142, genomic... 42 0.020
CP000806_543(CP000806|pid:none) Cyanothece sp. ATCC 51142 circul... 42 0.020
CP000359_148(CP000359|pid:none) Deinococcus geothermalis DSM 113... 42 0.020
AE000513_2352(AE000513|pid:none) Deinococcus radiodurans R1 chro... 42 0.027
CP000930_2505(CP000930|pid:none) Heliobacterium modesticaldum Ic... 42 0.027
CP000512_315(CP000512|pid:none) Acidovorax citrulli AAC00-1, com... 42 0.027
CP000352_3273(CP000352|pid:none) Ralstonia metallidurans CH34, c... 42 0.027
BA000022_2859(BA000022|pid:none) Synechocystis sp. PCC 6803 DNA,... 42 0.027
BA000043_1584(BA000043|pid:none) Geobacillus kaustophilus HTA426... 42 0.027
CP000560_759(CP000560|pid:none) Bacillus amyloliquefaciens FZB42... 42 0.027
CP001614_8(CP001614|pid:none) Teredinibacter turnerae T7901, com... 42 0.027
CP000386_57(CP000386|pid:none) Rubrobacter xylanophilus DSM 9941... 42 0.027
CP000140_648(CP000140|pid:none) Parabacteroides distasonis ATCC ... 42 0.027
CP000853_1904(CP000853|pid:none) Alkaliphilus oremlandii OhILAs,... 42 0.027
CP001359_2247(CP001359|pid:none) Anaeromyxobacter dehalogenans 2... 42 0.035
CP000750_1826(CP000750|pid:none) Kineococcus radiotolerans SRS30... 42 0.035
CP000251_1670(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 42 0.035
CP000447_933(CP000447|pid:none) Shewanella frigidimarina NCIMB 4... 42 0.035
AE009951_916(AE009951|pid:none) Fusobacterium nucleatum subsp. n... 42 0.035
AE016879_1880(AE016879|pid:none) Bacillus anthracis str. Ames, c... 41 0.045
CP000001_1831(CP000001|pid:none) Bacillus cereus E33L, complete ... 41 0.045
AE017226_1025(AE017226|pid:none) Treponema denticola ATCC 35405,... 41 0.045
AF115334_4(AF115334|pid:none) Pseudomonas fluorescens PpsA (ppsA... 41 0.045
CP001279_227(CP001279|pid:none) Nautilia profundicola AmH, compl... 35 0.057
CU633749_2848(CU633749|pid:none) Cupriavidus taiwanensis str. LM... 41 0.059
CP001322_2007(CP001322|pid:none) Desulfatibacillum alkenivorans ... 41 0.059
CP000903_1863(CP000903|pid:none) Bacillus weihenstephanensis KBA... 41 0.059
CU458896_1361(CU458896|pid:none) Mycobacterium abscessus chromos... 41 0.059
CP000875_4017(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 41 0.059
AE017194_2104(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 41 0.059
CP000680_2074(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 41 0.059
CP001022_1639(CP001022|pid:none) Exiguobacterium sibiricum 255-1... 41 0.059
CP000932_551(CP000932|pid:none) Campylobacter lari RM2100, compl... 40 0.077
CP000076_1839(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 40 0.077
AM181176_4513(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 40 0.077
CP000075_2092(CP000075|pid:none) Pseudomonas syringae pv. syring... 40 0.077
CP001177_1981(CP001177|pid:none) Bacillus cereus AH187, complete... 40 0.077
CP000749_4043(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 40 0.10
CP000778_187(CP000778|pid:none) Leptospira biflexa serovar Patoc... 40 0.10
CP001099_164(CP001099|pid:none) Chlorobaculum parvum NCIB 8327, ... 40 0.10
CP000721_1878(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 40 0.10
AP006716_505(AP006716|pid:none) Staphylococcus haemolyticus JCSC... 40 0.10
CP000388_3634(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 40 0.10
CP000774_2472(CP000774|pid:none) Parvibaculum lavamentivorans DS... 40 0.13
CP000768_637(CP000768|pid:none) Campylobacter jejuni subsp. doyl... 40 0.13
CP000612_2616(CP000612|pid:none) Desulfotomaculum reducens MI-1,... 40 0.13
CU459003_2360(CU459003|pid:none) Magnetospirillum gryphiswaldens... 40 0.13
CP000673_1493(CP000673|pid:none) Clostridium kluyveri DSM 555, c... 40 0.13
AY281357_13(AY281357|pid:none) Uncultured Acidobacteria bacteriu... 40 0.13
EU016596_5(EU016596|pid:none) Uncultured marine microorganism HF... 40 0.13
AM295250_1839(AM295250|pid:none) Staphylococcus carnosus subsp. ... 40 0.13
AM114193_2535(AM114193|pid:none) Uncultured methanogenic archaeo... 40 0.13
CP000814_946(CP000814|pid:none) Campylobacter jejuni subsp. jeju... 39 0.17
CT573326_1593(CT573326|pid:none) Pseudomonas entomophila str. L4... 39 0.17
CP000927_244(CP000927|pid:none) Caulobacter sp. K31, complete ge... 39 0.17
CP000804_2985(CP000804|pid:none) Roseiflexus castenholzii DSM 13... 39 0.17
CP001145_1365(CP001145|pid:none) Coprothermobacter proteolyticus... 39 0.17
AY596297_1146(AY596297|pid:none) Haloarcula marismortui ATCC 430... 39 0.17
CP000108_1557(CP000108|pid:none) Chlorobium chlorochromatii CaD3... 39 0.17
CP000077_2131(CP000077|pid:none) Sulfolobus acidocaldarius DSM 6... 39 0.17
CP001615_470(CP001615|pid:none) Exiguobacterium sp. AT1b, comple... 39 0.22
AE015451_2065(AE015451|pid:none) Pseudomonas putida KT2440 compl... 39 0.22
AL646052_2772(AL646052|pid:none) Ralstonia solanacearum GMI1000 ... 39 0.22
CP001068_2975(CP001068|pid:none) Ralstonia pickettii 12J chromos... 39 0.22
CP000885_1935(CP000885|pid:none) Clostridium phytofermentans ISD... 39 0.22
CP000099_147(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 39 0.22
CP000930_2694(CP000930|pid:none) Heliobacterium modesticaldum Ic... 39 0.22
CP000712_3602(CP000712|pid:none) Pseudomonas putida F1, complete... 39 0.22
CP001100_143(CP001100|pid:none) Chloroherpeton thalassium ATCC 3... 39 0.22
AL111168_948(AL111168|pid:none) Campylobacter jejuni subsp. jeju... 39 0.22
CP000854_1217(CP000854|pid:none) Mycobacterium marinum M, comple... 39 0.22
CP001001_3771(CP001001|pid:none) Methylobacterium radiotolerans ... 39 0.22
CP000949_1602(CP000949|pid:none) Pseudomonas putida W619, comple... 39 0.22
CU914168_2534(CU914168|pid:none) Ralstonia solanacearum strain I... 39 0.22
CR543861_362(CR543861|pid:none) Acinetobacter sp. ADP1 complete ... 39 0.29
CP000511_4406(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 39 0.29
(Q66FY7) RecName: Full=Magnesium transport protein corA; &(Q8ZA... 39 0.29
CP000606_788(CP000606|pid:none) Shewanella loihica PV-4, complet... 39 0.29
CP000527_797(CP000527|pid:none) Desulfovibrio vulgaris subsp. vu... 39 0.29
CP001638_1675(CP001638|pid:none) Geobacillus sp. WCH70, complete... 39 0.29
CP000058_2560(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 39 0.29
(Q7M9C0) RecName: Full=Magnesium transport protein corA; &BX571... 39 0.29
CP000503_3449(CP000503|pid:none) Shewanella sp. W3-18-1, complet... 39 0.29
CP001279_647(CP001279|pid:none) Nautilia profundicola AmH, compl... 39 0.29
AE016853_2744(AE016853|pid:none) Pseudomonas syringae pv. tomato... 39 0.29
CP000764_1562(CP000764|pid:none) Bacillus cereus subsp. cytotoxi... 39 0.29
CP000312_2363(CP000312|pid:none) Clostridium perfringens SM101, ... 39 0.29
CP000507_640(CP000507|pid:none) Shewanella amazonensis SB2B, com... 38 0.38
CP000685_241(CP000685|pid:none) Flavobacterium johnsoniae UW101,... 38 0.38
CP000159_782(CP000159|pid:none) Salinibacter ruber DSM 13855, co... 38 0.38
CP001022_974(CP001022|pid:none) Exiguobacterium sibiricum 255-15... 38 0.38
AL935258_126(AL935258|pid:none) Lactobacillus plantarum strain W... 38 0.38
CP000139_2622(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 38 0.38
(Q2NQF9) RecName: Full=Magnesium transport protein corA; &AP008... 38 0.38
CP000926_1585(CP000926|pid:none) Pseudomonas putida GB-1, comple... 38 0.38
CP000511_1201(CP000511|pid:none) Mycobacterium vanbaalenii PYR-1... 38 0.50
CP000089_3874(CP000089|pid:none) Dechloromonas aromatica RCB, co... 38 0.50
CP000238_118(CP000238|pid:none) Baumannia cicadellinicola str. H... 38 0.50
CP000352_3038(CP000352|pid:none) Ralstonia metallidurans CH34, c... 38 0.50
CP000568_2175(CP000568|pid:none) Clostridium thermocellum ATCC 2... 38 0.50
CP001132_2747(CP001132|pid:none) Acidithiobacillus ferrooxidans ... 38 0.50
AE016830_907(AE016830|pid:none) Enterococcus faecalis V583, comp... 38 0.50
EU408354_2(EU408354|pid:none) Uncultured bacterium BLR17 genomic... 38 0.50
CT573213_3197(CT573213|pid:none) Frankia alni str. ACN14A chromo... 38 0.50
CP000361_2205(CP000361|pid:none) Arcobacter butzleri RM4018, com... 38 0.50
CU459003_914(CU459003|pid:none) Magnetospirillum gryphiswaldense... 38 0.50
CP000746_1944(CP000746|pid:none) Actinobacillus succinogenes 130... 38 0.50
BX248357_155(BX248357|pid:none) Corynebacterium diphtheriae grav... 37 0.65
CP001013_372(CP001013|pid:none) Leptothrix cholodnii SP-6, compl... 37 0.65
(Q6CZH4) RecName: Full=Magnesium transport protein corA; &BX950... 37 0.65
AP009178_1039(AP009178|pid:none) Nitratiruptor sp. SB155-2 genom... 37 0.65
(Q65VT3) RecName: Full=Magnesium transport protein corA; &AE016... 37 0.65
CU928158_3555(CU928158|pid:none) Escherichia fergusonii ATCC 354... 37 0.65
AM260479_3082(AM260479|pid:none) Ralstonia eutropha H16 chromoso... 37 0.65
CP001600_112(CP001600|pid:none) Edwardsiella ictaluri 93-146, co... 37 0.65
BA000030_6270(BA000030|pid:none) Streptomyces avermitilis MA-468... 37 0.65
CP000471_2501(CP000471|pid:none) Magnetococcus sp. MC-1, complet... 37 0.65
CU694390_24(CU694390|pid:none) Ralstonia solanacearum strain Mol... 37 0.65
CP000450_527(CP000450|pid:none) Nitrosomonas eutropha C91, compl... 37 0.65
AE000657_592(AE000657|pid:none) Aquifex aeolicus VF5, complete g... 37 0.65
CP000633_683(CP000633|pid:none) Agrobacterium vitis S4 chromosom... 37 0.85
CP000076_4478(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 37 0.85
AP006878_506(AP006878|pid:none) Thermococcus kodakarensis KOD1 D... 37 0.85
(A1JNE0) RecName: Full=Zinc transport protein zntB; &AM286415_2... 37 0.85
CP000781_2459(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 37 0.85
CP000387_667(CP000387|pid:none) Streptococcus sanguinis SK36, co... 37 0.85
CP000725_1569(CP000725|pid:none) Streptococcus gordonii str. Cha... 37 0.85
GM016639_308(GM016639|pid:none) Sequence 1469 from Patent EP1923... 37 0.85
AM412317_51(AM412317|pid:none) Clostridium botulinum A str. ATCC... 37 0.85
CP000613_2809(CP000613|pid:none) Rhodospirillum centenum SW, com... 37 0.85
CP000139_815(CP000139|pid:none) Bacteroides vulgatus ATCC 8482, ... 37 0.85
(Q7MYP0) RecName: Full=Magnesium transport protein corA; &BX571... 37 0.85
CP001172_3115(CP001172|pid:none) Acinetobacter baumannii AB307-0... 37 0.85
CP000863_374(CP000863|pid:none) Acinetobacter baumannii ACICU, c... 37 0.85
CP000521_344(CP000521|pid:none) Acinetobacter baumannii ATCC 179... 37 0.85
CP000230_1878(CP000230|pid:none) Rhodospirillum rubrum ATCC 1117... 37 0.85
CP000575_1567(CP000575|pid:none) Staphylothermus marinus F1, com... 37 0.85
CP000094_4313(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 37 0.85
CP000382_766(CP000382|pid:none) Clostridium novyi NT, complete g... 37 1.1
CP001341_2527(CP001341|pid:none) Arthrobacter chlorophenolicus A... 37 1.1
AM420293_1028(AM420293|pid:none) Saccharopolyspora erythraea NRR... 37 1.1
AP009380_751(AP009380|pid:none) Porphyromonas gingivalis ATCC 33... 37 1.1
BX569689_147(BX569689|pid:none) Synechococcus sp. WH8102 complet... 37 1.1
AM236080_931(AM236080|pid:none) Rhizobium leguminosarum bv. vici... 37 1.1
CP000384_3961(CP000384|pid:none) Mycobacterium sp. MCS, complete... 37 1.1
CP000964_5238(CP000964|pid:none) Klebsiella pneumoniae 342, comp... 37 1.1
CP000254_2836(CP000254|pid:none) Methanospirillum hungatei JF-1,... 37 1.1
CP000269_2960(CP000269|pid:none) Janthinobacterium sp. Marseille... 37 1.1
CP001108_1569(CP001108|pid:none) Prosthecochloris aestuarii DSM ... 37 1.1
AM494968_371(AM494968|pid:none) Leishmania braziliensis chromoso... 37 1.1
AE015929_1958(AE015929|pid:none) Staphylococcus epidermidis ATCC... 37 1.1
CP000148_133(CP000148|pid:none) Geobacter metallireducens GS-15,... 37 1.1
CP000826_188(CP000826|pid:none) Serratia proteamaculans 568, com... 37 1.1
BA000043_1567(BA000043|pid:none) Geobacillus kaustophilus HTA426... 37 1.1
(Q7VN59) RecName: Full=Magnesium transport protein corA; &AE017... 36 1.5
CP000446_653(CP000446|pid:none) Shewanella sp. MR-4, complete ge... 36 1.5
CP000563_778(CP000563|pid:none) Shewanella baltica OS155, comple... 36 1.5
CP000880_3556(CP000880|pid:none) Salmonella enterica subsp. ariz... 36 1.5
(P0A2R8) RecName: Full=Magnesium transport protein corA; &(P0A2... 36 1.5
CP000469_647(CP000469|pid:none) Shewanella sp. ANA-3, complete g... 36 1.5
(P0ABI4) RecName: Full=Magnesium transport protein corA; &(P0AB... 36 1.5
CP000653_3943(CP000653|pid:none) Enterobacter sp. 638, complete ... 36 1.5
CP000891_3816(CP000891|pid:none) Shewanella baltica OS195, compl... 36 1.5
AM180355_2193(AM180355|pid:none) Clostridium difficile 630 compl... 36 1.5
AP008955_1874(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 36 1.5
CP000027_413(CP000027|pid:none) Dehalococcoides ethenogenes 195,... 36 1.5
CP001175_1957(CP001175|pid:none) Listeria monocytogenes HCC23, c... 36 1.5
AM286415_191(AM286415|pid:none) Yersinia enterocolitica subsp. e... 36 1.5
(Q5RCP7) RecName: Full=Centrosomal protein of 76 kDa; S... 36 1.5
AE017262_670(AE017262|pid:none) Listeria monocytogenes str. 4b F... 36 1.5
CP000510_2665(CP000510|pid:none) Psychromonas ingrahamii 37, com... 36 1.9
CP000463_4312(CP000463|pid:none) Rhodopseudomonas palustris BisA... 36 1.9
AP009178_1649(AP009178|pid:none) Nitratiruptor sp. SB155-2 genom... 36 1.9
CP000361_1606(CP000361|pid:none) Arcobacter butzleri RM4018, com... 36 1.9
AM286690_1335(AM286690|pid:none) Alcanivorax borkumensis SK2, co... 36 1.9
CP001074_933(CP001074|pid:none) Rhizobium etli CIAT 652, complet... 36 1.9
AE017180_3302(AE017180|pid:none) Geobacter sulfurreducens PCA, c... 36 1.9
AC1514(AC1514) membrane protein homolog lin0651 [imported] - Lis... 36 1.9
AE017341_3(AE017341|pid:none) Cryptococcus neoformans var. neofo... 36 1.9
CP000394_1621(CP000394|pid:none) Granulibacter bethesdensis CGDN... 36 1.9
CP000384_900(CP000384|pid:none) Mycobacterium sp. MCS, complete ... 36 1.9
CP000133_844(CP000133|pid:none) Rhizobium etli CFN 42, complete ... 36 1.9
BA000030_3113(BA000030|pid:none) Streptomyces avermitilis MA-468... 35 2.5
AE016853_3614(AE016853|pid:none) Pseudomonas syringae pv. tomato... 35 2.5
AM412236_5(AM412236|pid:none) Salmonella enterica Paratyphi A In... 35 2.5
(Q4QLP6) RecName: Full=Magnesium transport protein corA; &CP000... 35 2.5
CP000438_3211(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 35 2.5
CP000439_5(CP000439|pid:none) Francisella tularensis subsp. novi... 35 2.5
AM263198_615(AM263198|pid:none) Listeria welshimeri serovar 6b s... 35 2.5
AE016853_2254(AE016853|pid:none) Pseudomonas syringae pv. tomato... 35 2.5
CP000712_2674(CP000712|pid:none) Pseudomonas putida F1, complete... 35 2.5
CU633895_262(CU633895|pid:none) Podospora anserina genomic DNA c... 35 2.5
CP000962_45(CP000962|pid:none) Clostridium botulinum A3 str. Loc... 35 2.5
AM295250_1866(AM295250|pid:none) Staphylococcus carnosus subsp. ... 35 2.5
FP236842_208(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/96... 35 2.5
AF250878_96(AF250878|pid:none) Salmonella typhi R27 plasmid comp... 35 2.5
AE017354_266(AE017354|pid:none) Legionella pneumophila subsp. pn... 35 2.5
CT005268_210(CT005268|pid:none) Leishmania major strain Friedlin... 35 3.2
CP000783_3632(CP000783|pid:none) Enterobacter sakazakii ATCC BAA... 35 3.2
CP000820_4029(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 35 3.2
CP000482_2936(CP000482|pid:none) Pelobacter propionicus DSM 2379... 35 3.2
AM180252_97(AM180252|pid:none) Lawsonia intracellularis PHE/MN1-... 35 3.2
CP001341_2799(CP001341|pid:none) Arthrobacter chlorophenolicus A... 35 3.2
CP000449_2637(CP000449|pid:none) Maricaulis maris MCS10, complet... 35 3.2
CP000447_2472(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 35 3.2
CP000285_2603(CP000285|pid:none) Chromohalobacter salexigens DSM... 35 3.2
CP001348_1961(CP001348|pid:none) Clostridium cellulolyticum H10,... 35 3.2
CP000529_3764(CP000529|pid:none) Polaromonas naphthalenivorans C... 35 3.2
AH1503(AH1503) probable membrane protein lin0568 [imported] - Li... 35 3.2
AE015924_628(AE015924|pid:none) Porphyromonas gingivalis W83, co... 35 3.2
CP001197_2935(CP001197|pid:none) Desulfovibrio vulgaris str. 'Mi... 35 3.2
CP000792_878(CP000792|pid:none) Campylobacter concisus 13826, co... 35 4.2
CP000908_3562(CP000908|pid:none) Methylobacterium extorquens PA1... 35 4.2
CP000058_1650(CP000058|pid:none) Pseudomonas syringae pv. phaseo... 35 4.2
BC025473_1(BC025473|pid:none) Mus musculus leucine rich repeat c... 35 4.2
AK165201_1(AK165201|pid:none) Mus musculus 12 days embryo whole ... 35 4.2
CP001620_614(CP001620|pid:none) Corynebacterium kroppenstedtii D... 35 4.2
AC079815_6(AC079815|pid:none) Trypanosoma brucei chromosome 4 cl... 35 4.2
AM711867_1717(AM711867|pid:none) Clavibacter michiganensis subsp... 35 4.2
AC159445_18(AC159445|pid:none) Trypanosoma brucei chromosome 8 c... 35 4.2
(Q0II90) RecName: Full=Protein FAM81B; &BC122751_1(BC122751|pid... 35 4.2
AK169492_1(AK169492|pid:none) Mus musculus 3 days neonate thymus... 35 4.2
BC026572_1(BC026572|pid:none) Mus musculus leucine rich repeat c... 35 4.2
CP001392_3237(CP001392|pid:none) Diaphorobacter sp. TPSY, comple... 35 4.2
CP000075_1773(CP000075|pid:none) Pseudomonas syringae pv. syring... 35 4.2
BC019809_1(BC019809|pid:none) Mus musculus leucine rich repeat c... 35 4.2
CP000884_972(CP000884|pid:none) Delftia acidovorans SPH-1, compl... 35 4.2
AP009493_2368(AP009493|pid:none) Streptomyces griseus subsp. gri... 35 4.2
CP000509_2577(CP000509|pid:none) Nocardioides sp. JS614, complet... 34 5.5
CP000267_3686(CP000267|pid:none) Rhodoferax ferrireducens T118, ... 34 5.5
CP001010_207(CP001010|pid:none) Polynucleobacter necessarius sub... 34 5.5
CP000559_1698(CP000559|pid:none) Methanocorpusculum labreanum Z,... 34 5.5
CR628336_341(CR628336|pid:none) Legionella pneumophila str. Pari... 34 5.5
AP009049_3359(AP009049|pid:none) Clostridium kluyveri NBRC 12016... 34 5.5
DQ981515_1(DQ981515|pid:none) Sus scrofa leucine-rich repeat-con... 34 5.5
CP001083_2724(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 34 5.5
CP001601_1288(CP001601|pid:none) Corynebacterium aurimucosum ATC... 34 5.5
AM849034_1649(AM849034|pid:none) Clavibacter michiganensis subsp... 34 5.5
CP000431_1845(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 34 5.5
AL939122_223(AL939122|pid:none) Streptomyces coelicolor A3(2) co... 34 5.5
AK127881_1(AK127881|pid:none) Homo sapiens cDNA FLJ45987 fis, cl... 34 5.5
CU234118_6020(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 34 5.5
CP000777_2187(CP000777|pid:none) Leptospira biflexa serovar Pato... 34 5.5
CP000644_1713(CP000644|pid:none) Aeromonas salmonicida subsp. sa... 34 5.5
CP000656_2195(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c... 34 5.5
AJ938182_2256(AJ938182|pid:none) Staphylococcus aureus RF122 com... 34 5.5
AE017340_827(AE017340|pid:none) Idiomarina loihiensis L2TR, comp... 34 5.5
(Q8TDW0) RecName: Full=Leucine-rich repeat-containing protein 8C... 34 5.5
CP000487_939(CP000487|pid:none) Campylobacter fetus subsp. fetus... 34 5.5
CP000675_338(CP000675|pid:none) Legionella pneumophila str. Corb... 34 5.5
AM260522_249(AM260522|pid:none) Helicobacter acinonychis str. Sh... 34 5.5
CP001101_1669(CP001101|pid:none) Chlorobium phaeobacteroides BS1... 34 7.2
CP000352_549(CP000352|pid:none) Ralstonia metallidurans CH34, co... 34 7.2
AL844505_298(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 34 7.2
CP000962_2589(CP000962|pid:none) Clostridium botulinum A3 str. L... 34 7.2
CP001485_983(CP001485|pid:none) Vibrio cholerae MJ-1236 chromoso... 34 7.2
(Q8TAP6) RecName: Full=Centrosomal protein of 76 kDa; S... 34 7.2
AM412317_2610(AM412317|pid:none) Clostridium botulinum A str. AT... 34 7.2
CP000504_1862(CP000504|pid:none) Pyrobaculum islandicum DSM 4184... 34 7.2
CP001191_501(CP001191|pid:none) Rhizobium leguminosarum bv. trif... 34 7.2
CU468230_3013(CU468230|pid:none) Acinetobacter baumannii str. SD... 34 7.2
CU633900_1019(CU633900|pid:none) Podospora anserina genomic DNA ... 34 7.2
AE003852_2300(AE003852|pid:none) Vibrio cholerae O1 biovar eltor... 34 7.2
AK022604_1(AK022604|pid:none) Homo sapiens cDNA FLJ12542 fis, cl... 34 7.2
AL833727_1(AL833727|pid:none) Homo sapiens mRNA; cDNA DKFZp666F0... 34 7.2
CP000436_1660(CP000436|pid:none) Haemophilus somnus 129PT, compl... 34 7.2
AH1144(AH1144) probable membrane protein lmo0559 [imported] - Li... 33 9.4
(Q03749) RecName: Full=Pesticidal crystal protein cry7Aa; AltNam... 33 9.4
AL939109_223(AL939109|pid:none) Streptomyces coelicolor A3(2) co... 33 9.4
CP000158_2732(CP000158|pid:none) Hyphomonas neptunium ATCC 15444... 33 9.4
CP001600_1838(CP001600|pid:none) Edwardsiella ictaluri 93-146, c... 33 9.4
CP001635_3971(CP001635|pid:none) Variovorax paradoxus S110 chrom... 33 9.4
CP000094_2616(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 33 9.4
CP000655_219(CP000655|pid:none) Polynucleobacter necessarius sub... 33 9.4
AE015928_3413(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 33 9.4
(A7FHP6) RecName: Full=Zinc transport protein zntB; &(Q66A75) R... 33 9.4
AE009952_1964(AE009952|pid:none) Yersinia pestis KIM, complete g... 33 9.4
BC080460_1(BC080460|pid:none) Xenopus tropicalis hypothetical LO... 33 9.4
CP000485_2514(CP000485|pid:none) Bacillus thuringiensis str. Al ... 33 9.4
CP000087_1027(CP000087|pid:none) Rickettsia bellii RML369-C, com... 33 9.4
CP000316_4531(CP000316|pid:none) Polaromonas sp. JS666, complete... 33 9.4
CP001175_2044(CP001175|pid:none) Listeria monocytogenes HCC23, c... 33 9.4
CP000386_2992(CP000386|pid:none) Rubrobacter xylanophilus DSM 99... 33 9.4
CP000494_2320(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 33 9.4
CP001407_2875(CP001407|pid:none) Bacillus cereus 03BB102, comple... 33 9.4

>AE017347_93(AE017347|pid:none) Cryptococcus neoformans var.
neoformans JEC21 chromosome 7, complete sequence.
Length = 791

Score = 65.5 bits (158), Expect(2) = 2e-22
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 3/153 (1%)
Frame = +1

Query: 1 EDITSEDSTEKCEEFSNY---TFISTSETIYSYTDLVQSNIYIVQFSNFVLIFHEHPLDS 171
EDI E++ EK E F NY F S + YS T L N+YI+ F L FH
Sbjct: 511 EDILLEETREKIELFRNYYLVCFRSFDQDPYSQTYLEPLNMYIIVFREGTLSFHFRGTPH 570

Query: 172 IEDVLNSFRYLEGGVLASSQWIVSTFFESFNEIYSELSDQLMKEVNVLDEFTLSEDAAHH 351
++V ++L+ + +S WI + + + L + EV+ +DE L A
Sbjct: 571 PQNVRRRIKHLKDYISVTSDWISYALIDDITDAFGPLIQGIEFEVDSIDELVLILKEAEQ 630

Query: 352 SELYVRLGKATRKSTNLLSWIFIKNDMLSSLIR 450
S++ R+G +K LL + K D++ L +
Sbjct: 631 SDMLRRIGTCRKKVMGLLRLMGNKADVVKGLAK 663

Score = 64.3 bits (155), Expect(2) = 2e-22
Identities = 29/110 (26%), Positives = 64/110 (58%)
Frame = +2

Query: 470 IEFILSNIKDRTVRLKQKIKMAEELLENISNIYISKVSLVLNEESHALNISMGKFSSLSV 649
I LS+I+D + + Q + E++L + Y++++S+ + + ++ +N + K ++L
Sbjct: 677 IGLYLSDIQDHLITMTQNLNHYEKILSRSHSNYLAQISIEMTDANNQINDVLSKLTALGT 736

Query: 650 IFMPLNLIAGIFGMNVHLPGEADPDSTDESSFSGFICLMMIMVAIGAILT 799
+ +P+NL+ G++GMNVH+PG+ + + F G + + + +GA T
Sbjct: 737 VLIPMNLVTGLWGMNVHVPGQDIEEG--YTWFGGILGCLCLFAMLGAWAT 784

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,268,831,201
Number of extensions: 23819086
Number of successful extensions: 58779
Number of sequences better than 10.0: 406
Number of HSP's gapped: 58709
Number of HSP's successfully gapped: 446
Length of query: 288
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 161
Effective length of database: 640,137,871
Effective search space: 103062197231
Effective search space used: 103062197231
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.40 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
32.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for Contig-U01103-1 is cyt

VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0