Contig-U05111-1
Contig ID Contig-U05111-1
Contig update 2001. 8.29
Contig sequence
>Contig-U05111-1 (Contig-U05111-1Q) /CSM_Contig/Contig-U05111-1Q.Seq.d
ATTTATACAGTTATGTTAATAATGGTAATTCTTGAATTTACCTTATCACC
AAATGAAAAAGCTTCAGTTGATATACCAGATTCTCCAGCACAAGTAATTA
TTCAAATGTTTATTGCATTTATTTATTTATTTGCAAGTTCAGTNNCNATA
ATTAATATAATATTATTATACAATAATCAATCAATAAATTATGATGGTAG
TTTTGATGCAAATGCAACAACAGAATTTAAAAAGAAATATTATAAAATAG
CATTTATTGGTTGTTGTTGTTTTTTGACACGTTCAATTATAACAACAATT
ACAGTTTTTAAATTAACTGATCCATTTGGTATAAAAGATATTATATATTA
TCCAGTTTTAGAAATTATTCCAATTTTATTACTTTTNTATATTACAAATG
GACTTCATAAGTATGCTGGAACTTTAGGTGAAATTAATGAAGAAACTGGA
CTTTTGAAANACTAATTATAATTGAATAAAAATAAAATAAAAATAATTAT
CATTATTATTATTATTAT

Gap no gap
Contig length 518
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2841596
End point 2842114
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05111
List of clone(s)

est1=SSF365Z,1,519
Translated Amino Acid sequence
IYTVMLIMVILEFTLSPNEKASVDIPDSPAQVIIQMFIAFIYLFASSVXIINIILLYNNQ
SINYDGSFDANATTEFKKKYYKIAFIGCCCFLTRSIITTITVFKLTDPFGIKDIIYYPVL
EIIPILLLXYITNGLHKYAGTLGEINEETGLLKX*l*lnknkikiiiiiiii


Translated Amino Acid sequence (All Frames)
Frame A:
IYTVMLIMVILEFTLSPNEKASVDIPDSPAQVIIQMFIAFIYLFASSVXIINIILLYNNQ
SINYDGSFDANATTEFKKKYYKIAFIGCCCFLTRSIITTITVFKLTDPFGIKDIIYYPVL
EIIPILLLXYITNGLHKYAGTLGEINEETGLLKX*l*lnknkikiiiiiiii


Frame B:
fiqlc**w*flnlpyhqmkklqliyqilqhk*lfkcllhlfiylqvqxx*li*yyytiin
q*immvvlmqmqqqnlkrniik*hllvvvvf*hvql*qqlqfln*lihlv*kilyiiqf*
klfqfyyfxilqmdfismlel*vklmkkldf*xtnyn*ikik*k*lslllll


Frame C:
lysyvnngns*iylitk*ksfs*ytrfsstsnysnvyciylfickfsxxn*yniiiq*si
nkl*w*f*ckcnnri*keil*nsiywlllffdtfnynnnysf*in*siwykryyilssfr
nysnfitfxyykwts*vcwnfr*n**rnwtfexliiie*k*nknnyhyyyyy


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05111-1 (Contig-U05111-1Q)
/CSM_Contig/Contig-U05111-1Q.Seq.d
(518 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05111-1 (Contig-U05111-1Q) /CSM_Contig/Conti... 880 0.0
Contig-U12369-1 (Contig-U12369-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U11677-1 (Contig-U11677-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U11084-1 (Contig-U11084-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U05324-1 (Contig-U05324-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U03528-1 (Contig-U03528-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U14676-1 (Contig-U14676-1Q) /CSM_Contig/Conti... 36 0.036
Contig-U14426-1 (Contig-U14426-1Q) /CSM_Contig/Conti... 36 0.036
Contig-U12438-1 (Contig-U12438-1Q) /CSM_Contig/Conti... 36 0.036
Contig-U12300-1 (Contig-U12300-1Q) /CSM_Contig/Conti... 36 0.036

>Contig-U05111-1 (Contig-U05111-1Q) /CSM_Contig/Contig-U05111-1Q.Seq.d
Length = 518

Score = 880 bits (444), Expect = 0.0
Identities = 456/456 (100%)
Strand = Plus / Plus


Query: 1 atttatacagttatgttaataatggtaattcttgaatttaccttatcaccaaatgaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atttatacagttatgttaataatggtaattcttgaatttaccttatcaccaaatgaaaaa 60


Query: 61 gcttcagttgatataccagattctccagcacaagtaattattcaaatgtttattgcattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcttcagttgatataccagattctccagcacaagtaattattcaaatgtttattgcattt 120


Query: 121 atttatttatttgcaagttcagtnncnataattaatataatattattatacaataatcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atttatttatttgcaagttcagtnncnataattaatataatattattatacaataatcaa 180


Query: 181 tcaataaattatgatggtagttttgatgcaaatgcaacaacagaatttaaaaagaaatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcaataaattatgatggtagttttgatgcaaatgcaacaacagaatttaaaaagaaatat 240


Query: 241 tataaaatagcatttattggttgttgttgttttttgacacgttcaattataacaacaatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tataaaatagcatttattggttgttgttgttttttgacacgttcaattataacaacaatt 300


Query: 301 acagtttttaaattaactgatccatttggtataaaagatattatatattatccagtttta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acagtttttaaattaactgatccatttggtataaaagatattatatattatccagtttta 360


Query: 361 gaaattattccaattttattacttttntatattacaaatggacttcataagtatgctgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaaattattccaattttattacttttntatattacaaatggacttcataagtatgctgga 420


Query: 421 actttaggtgaaattaatgaagaaactggacttttg 456
||||||||||||||||||||||||||||||||||||
Sbjct: 421 actttaggtgaaattaatgaagaaactggacttttg 456


>Contig-U12369-1 (Contig-U12369-1Q) /CSM_Contig/Contig-U12369-1Q.Seq.d
Length = 1298

Score = 40.1 bits (20), Expect = 0.002
Identities = 23/24 (95%)
Strand = Plus / Minus


Query: 109 tttattgcatttatttatttattt 132
|||||| |||||||||||||||||
Sbjct: 1292 tttattccatttatttatttattt 1269


Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Plus


Query: 364 attattccaatttt 377
||||||||||||||
Sbjct: 112 attattccaatttt 125


>Contig-U11677-1 (Contig-U11677-1Q) /CSM_Contig/Contig-U11677-1Q.Seq.d
Length = 2608

Score = 40.1 bits (20), Expect = 0.002
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 13 atgttaataatggtaattct 32
||||||||||||||||||||
Sbjct: 875 atgttaataatggtaattct 894


Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 442 gaaactggactttt 455
||||||||||||||
Sbjct: 683 gaaactggactttt 670


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,514
Number of Sequences: 6905
Number of extensions: 22514
Number of successful extensions: 4319
Number of sequences better than 10.0: 1335
length of query: 518
length of database: 5,674,871
effective HSP length: 16
effective length of query: 502
effective length of database: 5,564,391
effective search space: 2793324282
effective search space used: 2793324282
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7.12
Homology vs DNA
Query= Contig-U05111-1 (Contig-U05111-1Q) /CSM_Contig/Contig-U05111-1Q.Seq.d
(518 letters)

Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C92804) Dictyostelium discoideum slug cDNA, clone SSF365. 523 0.0 2
(AC131739) Mus musculus BAC clone RP23-97B15 from 13, comple... 56 0.001 1
(AC161806) Mus musculus chromosome 5 clone RP23-382H6 map 5,... 56 0.001 1
(CR812466) Zebrafish DNA sequence from clone CH211-269M1 in ... 34 0.004 7
(AC226639) Lama pacos clone CH246-297F12, WORKING DRAFT SEQU... 42 0.005 6
(CT573283) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 0.008 6
(AC169141) Oryctolagus cuniculus clone LB1-278K6, WORKING DR... 44 0.010 4
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 40 0.017 6
(CR545462) Zebrafish DNA sequence from clone DKEYP-88F5 in l... 38 0.018 6
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 36 0.019 7
(AC106900) Homo sapiens BAC clone RP11-796E10 from 2, comple... 38 0.019 3
(CR381644) Zebrafish DNA sequence from clone CH211-80A15 in ... 38 0.021 5
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 38 0.021 9
(AC119601) Rattus norvegicus clone CH230-387C23, WORKING DRA... 52 0.022 1
(AC073174) Homo sapiens chromosome 10 clone RP11-319F12, com... 46 0.022 3
(AC152955) Mus musculus 6 BAC RP23-377G14 (Roswell Park Canc... 46 0.024 4
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete... 40 0.026 5
(DE124385) Oryzias latipes DNA, reverse end of BAC clone: Md... 48 0.028 2
(BX324152) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.028 7
(BX571817) Zebrafish DNA sequence from clone DKEY-287H13 in ... 36 0.029 7
(CE282847) tigr-gss-dog-17000333772977 Dog Library Canis lup... 40 0.034 2
(CR382325) Zebrafish DNA sequence from clone DKEY-186J8 in l... 40 0.035 5
(CE311936) tigr-gss-dog-17000360850200 Dog Library Canis lup... 42 0.035 2
(AE014186) Plasmodium falciparum 3D7 chromosome 11, complete... 42 0.041 3
(DQ456913) Syntormon pumilum voucher Pollet_0073_(P) cytochr... 36 0.045 3
(FM992692) Candida dubliniensis CD36 chromosome 5, complete ... 38 0.046 10
(AC115241) Rattus norvegicus clone CH230-234J7, WORKING DRAF... 40 0.050 5
(AC142426) Rattus norvegicus clone CH230-321N7, WORKING DRAF... 34 0.055 6
(AC139769) Homo sapiens chromosome 19 clone RP11-255H23, com... 42 0.058 3
(AC074294) Homo sapiens chromosome 2 clone RP11-520D12, WORK... 36 0.070 6
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 34 0.072 9
(AL049183) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 36 0.074 7
(CT583629) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 36 0.081 7
(AC102458) Mus musculus chromosome 1, clone RP24-312N11, com... 48 0.082 3
(CR936517) Zebrafish DNA sequence from clone DKEY-145J6 in l... 38 0.083 4
(AC232666) Lama pacos clone CH246-243P10, WORKING DRAFT SEQU... 50 0.087 1
(CE473210) tigr-gss-dog-17000364091331 Dog Library Canis lup... 50 0.087 1
(AL355173) Human DNA sequence from clone RP11-335P18 on chro... 38 0.092 4
(AC068465) Homo sapiens chromosome 4 clone RP11-30A16 map 4,... 34 0.096 6
(AC199032) Macaca mulatta clone CH250-188I13, WORKING DRAFT ... 44 0.096 4
(CU576539) M.truncatula DNA sequence from clone MTH2-123H5 o... 34 0.10 7
(AC182948) Bos taurus clone CH240-195M20, WORKING DRAFT SEQU... 36 0.11 7
(AC191173) Canis Familiaris chromosome 6, clone XX-482N19, c... 40 0.11 4
(AC092615) Homo sapiens BAC clone RP11-204D19 from 2, comple... 36 0.11 4
(AC117810) Mus musculus chromosome 18, clone RP24-571D2, com... 40 0.12 3
(AC211133) Papio anubis clone RP41-229I5, WORKING DRAFT SEQU... 34 0.12 6
(AC141274) Homo sapiens chromosome 16 clone RP11-164D11, WOR... 40 0.12 4
(FP326676) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.13 7
(CT033806) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 0.13 4
(BX663603) Zebrafish DNA sequence from clone DKEY-11H7 in li... 40 0.13 4
(AC112870) Rattus norvegicus clone CH230-123F23, WORKING DRA... 40 0.13 3
(AL450269) Human DNA sequence from clone RP11-131I7 on chrom... 46 0.14 2
(CU914220) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.14 4
(DD010736) Diagnosis of known genetic Parameters within the ... 42 0.15 4
(AC129744) Rattus norvegicus clone CH230-261G9, *** SEQUENCI... 38 0.15 4
(AJ003147) Homo sapiens complete genomic sequence between D1... 46 0.16 2
(BX470199) Zebrafish DNA sequence from clone CH211-226M7 in ... 32 0.16 8
(AC095634) Rattus norvegicus clone CH230-8J10, *** SEQUENCIN... 36 0.16 4
(AC171374) Saimiri boliviensis boliviensis clone CH254-446F2... 40 0.17 3
(EJ569786) 1092960027387 Global-Ocean-Sampling_GS-29-01-01-1... 44 0.17 2
(AC201723) Colobus guereza clone CH272-240C6, WORKING DRAFT ... 44 0.17 4
(CP000678) Methanobrevibacter smithii ATCC 35061, complete g... 36 0.17 17
(AC179332) Strongylocentrotus purpuratus clone R3-57J23, WOR... 38 0.18 5
(AC094121) Rattus norvegicus clone CH230-2O6, WORKING DRAFT ... 40 0.18 4
(AC151939) Dasypus novemcinctus clone VMRC5-357C17, WORKING ... 36 0.18 5
(AC015834) Homo sapiens clone RP11-23H13, WORKING DRAFT SEQU... 42 0.18 5
(CU469140) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.19 6
(AC083965) Homo sapiens chromosome 4 clone RP11-89E4 map 4, ... 40 0.19 6
(AC126647) Rattus norvegicus clone CH230-112F7, WORKING DRAF... 46 0.19 5
(CT868728) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.19 7
(AC093739) Homo sapiens chromosome 2 clone RP11-22A4, WORKIN... 36 0.20 6
(AC020786) Mus musculus chromosome 7, clone RP23-178G8, comp... 34 0.20 2
(GM887603) Sequence 70 from Patent WO2008137089. 34 0.20 5
(AC026625) Homo sapiens chromosome 16 clone RP11-669E14 map ... 46 0.20 2
(AC166661) Bos taurus clone CH240-183F7, WORKING DRAFT SEQUE... 34 0.20 5
(CT573487) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.20 5
(CU695043) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.21 5
(AC100183) Mus musculus chromosome 3, clone RP23-54L16, comp... 38 0.21 4
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome. 44 0.21 5
(BX470068) Zebrafish DNA sequence from clone CH211-219C8 in ... 34 0.21 6
(AC084724) Homo sapiens BAC clone RP11-613O14 from 4, comple... 38 0.22 5
(BX663513) Zebrafish DNA sequence from clone DKEY-234F12 in ... 38 0.22 5
(BX813304) Zebrafish DNA sequence from clone DKEY-47G2 in li... 40 0.24 3
(CU856057) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 0.24 6
(FP101876) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.25 4
(AC137716) Homo sapiens chromosome 18 clone RP11-313D17 map ... 34 0.25 5
(AC219985) Bos taurus clone CH240-317C18, WORKING DRAFT SEQU... 38 0.25 5
(AC094734) Rattus norvegicus clone CH230-5I10, WORKING DRAFT... 46 0.25 4
(DQ005184) Macrosiphum aetheocornum tRNA-Leu gene, partial s... 38 0.26 2
(AC203347) Macaca mulatta clone CH250-33C24, WORKING DRAFT S... 36 0.26 5
(U97014) Caenorhabditis elegans cosmid T05E8, complete seque... 42 0.27 2
(DW739211) MSAM053271_0649_1625 LCM-dissected maize shoot ap... 34 0.27 2
(AC148505) Callithrix jacchus clone CH259-527E1, WORKING DRA... 36 0.28 5
(CU468622) Zebrafish DNA sequence from clone DKEYP-104H2 in ... 40 0.28 6
(AL121983) Human DNA sequence from clone RP11-160H22 on chro... 42 0.28 3
(AC149096) Mus musculus chromosome 5 clone RP24-171N13, WORK... 48 0.28 3
(CR846096) Zebrafish DNA sequence from clone DKEYP-8C10 in l... 34 0.28 5
(AC169109) Bos taurus clone CH240-232P12, WORKING DRAFT SEQU... 42 0.28 5
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 42 0.29 8
(AC151979) Mus musculus chromosome 5 clone RP24-171P11, *** ... 48 0.29 3
(AC134951) Danio rerio strain Tue clone CH211-57I20, WORKING... 36 0.30 7
(FP236562) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.30 6
(CU457464) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.30 4
(AM473548) Vitis vinifera contig VV78X065187.5, whole genome... 42 0.31 3
(AC165400) Oryctolagus cuniculus clone LB1-84N4, WORKING DRA... 46 0.31 4
(AQ982817) RPCI-23-261M5.TV RPCI-23 Mus musculus genomic clo... 36 0.32 2
(AC152870) Danio rerio clone 54P21, WORKING DRAFT SEQUENCE, ... 40 0.32 4
(AL355677) Human DNA sequence from clone RP11-428M15 on chro... 38 0.32 6
(BX323889) Zebrafish DNA sequence from clone CH211-14G4 in l... 42 0.33 6
(CT797460) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.34 6
(FM878358) Eudyptes chrysolophus microsatellite DNA, locus E... 48 0.34 1
(CU611049) Zebrafish DNA sequence from clone CH1073-158H13 i... 48 0.34 1
(CU302316) Zebrafish DNA sequence from clone CH211-25G7 in l... 48 0.34 1
(CR352285) Zebrafish DNA sequence from clone CH211-210K13 in... 48 0.34 1
(G82623) S208P6573RH1.T0 129S1/SvImJ Mus musculus STS genomi... 48 0.34 1
(AU027302) Rattus norvegicus, OTSUKA clone, OT40.07/764c07, ... 48 0.34 1
(CT572983) Mouse DNA sequence from clone RP23-110N1 on chrom... 48 0.34 1
(AY046056) Mus musculus zonadhesin (Zan) gene, complete cds. 48 0.34 1
(AL928974) Mouse DNA sequence from clone RP23-56C2 on chromo... 48 0.34 1
(AL358892) Mouse DNA sequence from clone RP21-417G6 on chrom... 48 0.34 1
(AF312033) Mus musculus acetylcholinesterase (Ache) and D5Er... 48 0.34 1
(AC168278) Mus musculus BAC RP24-83C9 (Roswell Park Cancer ... 48 0.34 1
(AC165358) Mus musculus BAC clone RP23-122F14 from chromosom... 48 0.34 1
(AC164411) Mus musculus chromosome 1, clone RP23-60E6, compl... 48 0.34 1
(AC162907) Mus musculus BAC clone RP24-286I24 from chromosom... 48 0.34 1
(AC158558) Mus musculus chromosome 5, clone RP23-34P11, comp... 48 0.34 1
(AC154861) Mus musculus BAC clone RP23-8E13 from chromosome ... 48 0.34 1
(AC154778) Mus musculus BAC clone RP24-459I17 from chromosom... 48 0.34 1
(AC154011) Mus musculus 6 BAC RP24-261O15 (Roswell Park Canc... 48 0.34 1
(AC150682) Mus musculus BAC clone RP24-210N1 from 5, complet... 48 0.34 1
(AC148018) Mus musculus BAC clone RP23-45G4 from 5, complete... 48 0.34 1
(AC138367) Mus musculus chromosome 8, clone RP23-296G24, com... 48 0.34 1
(AC124519) Mus musculus BAC clone RP23-393I12 from 1, comple... 48 0.34 1
(AC119861) Mus musculus chromosome 3, clone RP23-291P19, com... 48 0.34 1
(AC119267) Mus musculus chromosome 8, clone RP24-322H19, com... 48 0.34 1
(AC116722) Mus musculus chromosome 3, clone RP23-257M16, com... 48 0.34 1
(AC115928) Mus musculus chromosome 18, clone RP24-530D22, co... 48 0.34 1
(AC111126) Mus musculus chromosome 5, clone RP23-336F4, comp... 48 0.34 1
(AC110254) Mus musculus chromosome 5, clone RP23-271B12, com... 48 0.34 1
(DL005697) NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES. 48 0.34 1
(CS459622) Sequence 103 from Patent WO2006117596. 48 0.34 1
(AY077633) Dictyostelium discoideum ABC transporter ABCD.2 g... 48 0.34 1
(AC097507) Homo sapiens BAC clone RP11-371E22 from 4, comple... 48 0.34 1
(AC159637) Mus musculus chromosome 12 clone RP24-81I4, WORKI... 48 0.34 1
(AC152820) Mus musculus chromosome 5 clone RP24-338L14, WORK... 48 0.34 1
(AC119021) Rattus norvegicus clone CH230-244E11, WORKING DRA... 48 0.34 1
(AC108235) Rattus norvegicus clone CH230-103M23, *** SEQUENC... 48 0.34 1
(CU550671) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 48 0.34 1
(AC231590) Monodelphis domestica clone VMRC18-778M8, WORKING... 48 0.34 1
(AC231481) Monodelphis domestica clone VMRC6-350E12, WORKING... 48 0.34 1
(AC178170) Strongylocentrotus purpuratus clone R3-3081N8, WO... 48 0.34 1
(AC169066) Bos taurus clone CH240-210N4, WORKING DRAFT SEQUE... 48 0.34 1
(AC165772) Bos taurus clone CH240-160H23, WORKING DRAFT SEQU... 48 0.34 1
(AZ450563) 1M0249B19F Mouse 10kb plasmid UUGC1M library Mus ... 48 0.34 1
(AZ368310) 1M0118O14F Mouse 10kb plasmid UUGC1M library Mus ... 48 0.34 1
(DH199887) Oryzias latipes Fosmid clone:GOLWFno491_a07, forw... 48 0.34 1
(DH040235) Oryzias latipes Fosmid clone:GOLWFno74_m09, forwa... 48 0.34 1
(DE488612) Bombyx mori genomic DNA, Fosmid clone:GBMFno95_f0... 48 0.34 1
(GH660398) CBZA35539.g1 CBZA: Normalized channel catfish cDN... 48 0.34 1
(EX861710) CBNF6113.rev CBNF Phycomyces blakesleeanus NRRL15... 48 0.34 1
(EX859770) CBNF515.rev CBNF Phycomyces blakesleeanus NRRL155... 48 0.34 1
(EX830945) CBNB2615.fwd CBNB Phycomyces blakesleeanus NRRL15... 48 0.34 1
(EX830944) CBNB2615.rev CBNB Phycomyces blakesleeanus NRRL15... 48 0.34 1
(CU929168) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.35 4
(CU928274) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.35 6
(AC193575) Zea mays chromosome unknown clone CH201-273G23; Z... 44 0.35 3
(BI866834) ft60h08.y1 Gong zebrafish ovary Danio rerio cDNA ... 36 0.36 2
(AC118095) Rattus norvegicus clone CH230-369P14, WORKING DRA... 40 0.36 2
(CU633481) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 36 0.37 8
(AC135859) Mus musculus BAC clone RP24-151D9 from 10, comple... 36 0.39 4
(BI866643) ft58f04.y1 Gong zebrafish ovary Danio rerio cDNA ... 36 0.39 2
(AC165763) Bos taurus clone CH240-159L7, WORKING DRAFT SEQUE... 36 0.39 6
(BI428975) fr70g08.x1 zebrafish adult brain Danio rerio cDNA... 36 0.41 2
(BI843386) ft60h08.x1 Gong zebrafish ovary Danio rerio cDNA ... 36 0.41 2
(AC009115) Homo sapiens chromosome 16 clone RP11-475N2, WORK... 46 0.42 2
(AC193247) Gallus gallus BAC clone CH261-180N20 from chromos... 34 0.42 5
(AC026861) Homo sapiens chromosome 15 clone RP11-316E22, WOR... 38 0.42 4
(BX323017) Zebrafish DNA sequence from clone DKEYP-41F9. 40 0.42 6
(AL935293) Zebrafish DNA sequence from clone CH211-251D10 in... 42 0.43 6
(AC090519) Homo sapiens chromosome 15 clone RP11-616K22 map ... 36 0.43 4
(CU012049) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.43 6
(CR846093) Zebrafish DNA sequence from clone DKEY-88P16 in l... 40 0.44 3
(CR627487) Zebrafish DNA sequence from clone DKEY-181K11 in ... 40 0.44 5
(AC097736) Rattus norvegicus clone CH230-6J6, *** SEQUENCING... 42 0.44 7
(AC113859) Rattus norvegicus clone CH230-252F18, *** SEQUENC... 46 0.45 2
(BX510306) Zebrafish DNA sequence from clone CH211-195F19 in... 40 0.45 4
(AC083915) Mus musculus strain C57BL6/J chromosome 6 clone R... 44 0.45 2
(ED506137) ix78a07.b1 Sub-library of four pooled sorghum BAC... 34 0.45 3
(BX470087) Zebrafish DNA sequence from clone CH211-202A10 in... 42 0.45 3
(AC119784) Rattus norvegicus clone CH230-143A5, *** SEQUENCI... 36 0.45 5
(AC175003) Oryctolagus cuniculus clone LB1-45M10, WORKING DR... 38 0.46 4
(BQ109752) imageqc_7_2001/snn448bdff41.x1 Gong zebrafish ova... 36 0.46 2
(BI843205) ft58f04.x1 Gong zebrafish ovary Danio rerio cDNA ... 36 0.46 2
(AC197646) Saimiri boliviensis boliviensis clone CH254-376M1... 38 0.47 6
(BX470175) Zebrafish DNA sequence from clone DKEY-228K17 in ... 44 0.47 4
(AC113968) Mus musculus chromosome 8, clone RP23-120M17, com... 36 0.47 5
(FP326743) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.47 6
(AC115594) Dictyostelium discoideum chromosome 2 map 4071862... 38 0.48 4
(AC133668) Rattus norvegicus clone CH230-154O7, *** SEQUENCI... 40 0.49 5
(CU855554) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.49 6
(AC121523) Mus musculus chromosome 18, clone RP24-92N23, com... 42 0.49 4
(AC004153) Plasmodium falciparum chromosome 12 clone PFYAC81... 36 0.50 5
(EA669911) Sequence 48790 from patent US 7365185. 40 0.50 3
(BX571968) Zebrafish DNA sequence from clone DKEY-27C4 in li... 38 0.51 5
(CR848826) Zebrafish DNA sequence from clone CH211-101L24 in... 36 0.52 4
(AC107530) Rattus norvegicus clone CH230-159G20, *** SEQUENC... 40 0.53 2
(AC136147) Mus musculus BAC clone RP23-18B3 from 8, complete... 40 0.55 4
(EI864257) CAH1-37I16TV CAA1Ba Cicer arietinum genomic clone... 40 0.55 2
(AC187685) Callicebus moloch clone LB5-223C23, WORKING DRAFT... 36 0.55 4
(AC104395) Homo sapiens BAC clone RP11-488M9 from 2, complet... 34 0.57 6
(AF046228) Mycoplasma hyopneumoniae 30 kDa GTP-binding prote... 38 0.57 2
(AC130563) Rattus norvegicus clone CH230-88B15, *** SEQUENCI... 46 0.58 2
(CR954301) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.58 5
(CR047337) Forward strand read from insert in 3'HPRT inserti... 38 0.58 2
(AC197661) Spermophilus tridecemlineatus clone VMRC20-497K4,... 42 0.59 3
(AC093472) Mus musculus clone RP23-29M18, WORKING DRAFT SEQU... 36 0.59 4
(GC700508) Sequence 15753 from patent US 6812339. 42 0.60 5
(AC116642) Homo sapiens chromosome 4 clone RP11-633G6, *** S... 38 0.60 5
(AC123512) Homo sapiens 12 BAC RP11-24B21 (Roswell Park Canc... 34 0.60 6
(AC167553) Mus musculus chromosome 8 clone RP24-181K14 map 8... 36 0.62 4
(FP067387) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.62 5
(CT573321) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 0.62 6
(BX901884) Zebrafish DNA sequence from clone DKEY-89E13 in l... 34 0.63 4
(AC175357) Bos taurus clone CH240-140C18, *** SEQUENCING IN ... 36 0.63 5
(AC078952) Homo sapiens 3 BAC RP11-764E15 (Roswell Park Canc... 38 0.64 5
(CR380952) Candida glabrata strain CBS138 chromosome F compl... 46 0.65 9
(AC166009) Neofelis nebulosa clone CH87-29M3, WORKING DRAFT ... 36 0.65 4
(AX951695) Sequence 12 from Patent WO03093310. 36 0.65 5
(AC133203) Mus musculus BAC clone RP23-85M7 from chromosome ... 38 0.65 4
(AC022416) Homo sapiens chromosome 5 clone CTC-489P21, compl... 36 0.66 4
(CT428406) Sus scrofa genomic clone CH242-418A2, genomic sur... 38 0.66 2
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co... 32 0.69 11
(BX323049) Zebrafish DNA sequence from clone DKEY-30L22 in l... 36 0.70 6
(AC162461) Mus musculus chromosome 5, clone RP23-265I19, com... 38 0.70 4
(EA696219) Sequence 75098 from patent US 7365185. 44 0.72 4
(CT027581) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 0.72 2
(CR388128) Zebrafish DNA sequence from clone CH211-127B17 in... 34 0.73 2
(BX000522) Zebrafish DNA sequence from clone CH211-146K11 in... 34 0.73 2
(AC162242) Bos taurus clone CH240-111J16, WORKING DRAFT SEQU... 32 0.73 2
(AC122815) Mus musculus BAC clone RP23-234O3 from chromosome... 36 0.74 5
(FP312807) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.74 5
(DD349238) Novel nucleic acid sequences and proteins of tumo... 36 0.75 5
(GN374938) Sequence 12 from Patent WO2003093310. 36 0.75 5
(CU369188) Mouse DNA sequence from clone CH29-68L23 on chrom... 36 0.75 5
(AC074133) Homo sapiens chromosome 5 clone CTD-2278B20, comp... 42 0.76 2
(AC111147) Homo sapiens chromosome 15 clone RP11-102B7 map 1... 34 0.76 6
(CR361541) Zebrafish DNA sequence from clone DKEY-99G10 in l... 40 0.77 6
(CU469087) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.78 6
(AC145128) Homo sapiens chromosome 5 clone RP11-1010O9, WORK... 34 0.78 6
(CR847570) Zebrafish DNA sequence from clone DKEY-29M9 in li... 36 0.79 6
(CU929394) Zebrafish DNA sequence from clone ZFOS-1172B9 in ... 34 0.79 2
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 40 0.80 5
(DD194611) Method and nucleic acids for the analysis of a co... 32 0.81 5
(AX825171) Sequence 5 from Patent WO03072812. 32 0.81 5
(AC097340) Rattus norvegicus clone CH230-81G10, WORKING DRAF... 36 0.82 4
(AF091512) Homo sapiens familial mediterranean fever locus g... 46 0.86 2
(AB050050) Homo sapiens MCCB gene for non-biotin containing ... 36 0.86 3
(AC069559) Mus musculus strain C57BL/6J clone rp23-136j2 map... 40 0.86 5
(AC148768) Mus musculus chromosome 8, clone RP23-439G21, com... 36 0.87 4
(AC163155) Bos taurus clone CH240-75D18, WORKING DRAFT SEQUE... 32 0.87 6
(AC004688) Plasmodium falciparum chromosome 12 clone PFYAC69... 34 0.87 6
(AL929204) Zebrafish DNA sequence from clone CH211-138E4. 36 0.87 4
(AP009287) Solanum lycopersicum genomic DNA, chromosome 8, c... 36 0.88 4
(CT030029) Zebrafish DNA sequence from clone DKEY-175K4 in l... 36 0.89 4
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 36 0.91 8
(AY940097) Homo sapiens X-ray repair complementing defective... 36 0.91 7
(AC148256) Callithrix jacchus clone CH259-121L5, WORKING DRA... 36 0.92 8
(AC026518) Homo sapiens chromosome 3 clone RP11-69J10 map 3,... 40 0.93 4
(BX571982) Zebrafish DNA sequence from clone CH211-204K19 in... 40 0.94 4
(CT030231) Mouse DNA sequence from clone RP24-331M15 on chro... 40 0.95 3
(CU570815) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.96 6
(CU062406) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.98 6
(AC016135) Homo sapiens chromosome 15 clone RP11-86F12 map 1... 40 0.99 3
(AJ004799) Homo sapiens SYBL1 gene. 36 0.99 3
(AC186988) Canis Familiaris chromosome 29, clone XX-319E23, ... 34 1.00 8
(BX510958) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 1.0 6
(BX927380) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 34 1.0 7
(AC092724) Homo sapiens chromosome 16 clone RP11-571O6, comp... 34 1.0 6
(CU468136) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 1.0 5
(AC095660) Rattus norvegicus clone CH230-7K16, *** SEQUENCIN... 36 1.0 8
(AC149190) Papio anubis clone RP41-478K23, WORKING DRAFT SEQ... 40 1.0 3
(DW836711) MSAM277401_0495_0449 LCM-dissected maize shoot ap... 34 1.0 2
(AL158829) Human DNA sequence from clone RP11-406O23 on chro... 36 1.0 5
(AC007511) Homo sapiens, clone RP11-84A1, complete sequence. 38 1.0 4
(CU424431) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 1.0 7
(AC180822) Strongylocentrotus purpuratus clone R3-3071C01, W... 36 1.0 3
(CU468420) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 1.0 4
(CU856385) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 1.0 7
(CR752654) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 1.0 6
(GC701580) Sequence 16825 from patent US 6812339. 36 1.0 3
(CU462869) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 1.1 6
(AL161613) Human DNA sequence from clone RP11-22J15 on chrom... 40 1.1 2
(AC110791) Homo sapiens BAC clone RP11-563L14 from 7, comple... 32 1.1 4
(AC013686) Homo sapiens clone RP11-21A12, WORKING DRAFT SEQU... 40 1.1 3
(BX510327) Zebrafish DNA sequence from clone CH211-253J24 in... 42 1.1 5
(AL929016) Zebrafish DNA sequence from clone DKEY-24J9 in li... 38 1.1 5
(AC004936) Homo sapiens PAC clone RP5-959C21 from 7, complet... 36 1.1 5
(AC022316) Homo sapiens chromosome 11 clone RP11-46D24, comp... 36 1.1 6
(AC013278) Homo sapiens chromosome 2 clone RP11-496C1, WORKI... 38 1.1 3
(AL935291) Zebrafish DNA sequence from clone CH211-226M23 in... 36 1.1 4
(AC165395) Oryctolagus cuniculus clone LB1-313F21, WORKING D... 44 1.1 3
(AC020934) Homo sapiens chromosome 19 clone CTD-2265O21, com... 40 1.1 2
(CU468241) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.1 2
(AC095077) Rattus norvegicus clone CH230-6P4, *** SEQUENCING... 42 1.1 7
(AC127930) Rattus norvegicus clone CH230-324F12, *** SEQUENC... 34 1.1 4
(AL139021) Human chromosome 14 DNA sequence BAC R-517O13 of ... 36 1.1 4
(AC025043) Homo sapiens chromosome 15 clone RP11-516C1 map 1... 36 1.2 4
(AC184067) Populus trichocarpa clone Pop1-111E3, complete se... 40 1.2 3
(AC011330) Homo sapiens chromosome 15 clone RP11-315A19 map ... 40 1.2 3
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 34 1.2 7
(FP102471) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 1.2 6
(AC009634) Homo sapiens chromosome 8, clone RP11-413C18, com... 34 1.2 5
(AL121892) Human DNA sequence from clone RP5-1195D24 on chro... 36 1.2 6
(EF444961) Homo sapiens cdk5 and ABL1 enzyme substrate 1 (CA... 38 1.2 2
(CU695029) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 1.2 3
(AC202802) Gallus gallus BAC clone CH261-9O22 from chromosom... 40 1.2 3
(AC136434) Homo sapiens chromosome 16 clone RP11-261E14, WOR... 42 1.2 3
(GN009057) Sequence 1498 from Patent EP2014669. 36 1.2 6
(AC114893) Felis catus clone RP86-373P23, WORKING DRAFT SEQU... 44 1.2 2
(CU467014) Zebrafish DNA sequence from clone CH73-315F9 in l... 38 1.2 3
(AC114597) Mus musculus clone RP23-297G13, WORKING DRAFT SEQ... 36 1.3 4
(AC216413) Populus trichocarpa clone POP035-J17, complete se... 34 1.3 6
(AL161799) Human DNA sequence from clone RP11-177H22 on chro... 36 1.3 6
(DE573203) Bombyx mori genomic DNA, Fosmid clone:GBMFno219_f... 40 1.3 2
(BX649447) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 44 1.3 5
(AC139483) Homo sapiens chromosome 5 clone RP11-595N20, WORK... 34 1.3 6
(AL672004) Mouse DNA sequence from clone RP23-200C21 on chro... 36 1.3 5
(CR450839) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 1.3 3
(CU633925) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 1.3 6
(CT237075) Sus scrofa genomic clone CH242-178J2, genomic sur... 40 1.3 2
(CU914248) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 1.3 6
(AC023948) Homo sapiens chromosome 8, clone RP11-669B22, com... 38 1.3 3
(BX936387) Zebrafish DNA sequence from clone CH211-245M11 in... 32 1.3 5
(AM439554) Vitis vinifera contig VV78X007635.12, whole genom... 40 1.3 3
(AC108978) Rattus norvegicus clone CH230-290A11, *** SEQUENC... 46 1.3 3
(AC224783) Bos taurus clone CH240-476D8, WORKING DRAFT SEQUE... 38 1.3 6
(AL772389) Mouse DNA sequence from clone RP23-106D7 on chrom... 36 1.3 5
(AF240617) Homo sapiens clone 9qtel_2241draft_a sequence. 40 1.3 3
(AC020556) Homo sapiens BAC clone RP11-507B10 from 4, comple... 40 1.3 4
(BM264496) ig36a10.x1 HR85 islet Homo sapiens cDNA 3', mRNA ... 36 1.3 2
(CU633499) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 1.3 5
(CU914209) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 1.3 3
(AC203557) Medicago truncatula clone mth2-68e20, complete se... 34 1.3 6
(CU855570) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 1.3 4
(CR762402) Zebrafish DNA sequence from clone DKEY-164F10 in ... 46 1.4 1
(CR388189) Zebrafish DNA sequence from clone DKEY-48K17 in l... 46 1.4 1
(CR381695) Zebrafish DNA sequence from clone CH211-265I20 in... 46 1.4 1
(CR376798) Zebrafish DNA sequence from clone DKEY-78N18 in l... 46 1.4 1
(BX465203) Zebrafish DNA sequence from clone CH211-221F10 in... 46 1.4 1
(BX119984) Zebrafish DNA sequence from clone DKEY-257N17 in ... 46 1.4 1
(BX005419) Zebrafish DNA sequence from clone DKEY-199L1 in l... 46 1.4 1
(AL845326) Zebrafish DNA sequence from clone CH211-191D15 in... 46 1.4 1
(BV397759) S243P6122FB4.T0 CaliforniaCoyote Canis latrans ST... 46 1.4 1
(BX537331) Mouse DNA sequence from clone RP23-338B23 on chro... 46 1.4 1
(AL592551) Mouse DNA sequence from clone RP23-12I13 on chrom... 46 1.4 1
(AC159466) Mus musculus 10 BAC RP23-388A21 (Roswell Park Can... 46 1.4 1
(AC156276) Mus musculus 10 BAC RP24-323L12 (Roswell Park Can... 46 1.4 1
(AC104832) Mus Musculus Strain C57BL6/J Chromosome 12 BAC, R... 46 1.4 1
(AC099614) Mus musculus chromosome 15, clone RP23-408O11, co... 46 1.4 1
(AM430919) Vitis vinifera contig VV78X124026.13, whole genom... 46 1.4 1
(AL161508) Arabidopsis thaliana DNA chromosome 4, contig fra... 46 1.4 1
(AF128395) Arabidopsis thaliana BAC F5K24. 46 1.4 1
(AC006268) Arabidopsis thaliana BAC T24G23 from chromosome I... 46 1.4 1
(AC006067) Arabidopsis thaliana chromosome 2 clone T13P21 ma... 46 1.4 1
(DD392022) Method and nucleic acids for the improved treatme... 46 1.4 1
(CQ807278) Sequence 728 from Patent WO2004035803. 46 1.4 1
(AE014134) Drosophila melanogaster chromosome 2L, complete s... 46 1.4 1
(AC013351) Drosophila melanogaster clone BACR06H06, complete... 46 1.4 1
(AC006415) Drosophila melanogaster, chromosome 2L, region 40... 46 1.4 1
(AC090787) Homo sapiens chromosome 18, clone RP11-373G16, co... 46 1.4 1
(AC036125) Homo sapiens chromosome 18, clone RP11-482F20, co... 46 1.4 1
(AC148452) Xenopus (Silurana) tropicalis clone CH216-144N4, ... 46 1.4 1
(AC136052) Rattus norvegicus clone CH230-292B24, WORKING DRA... 46 1.4 1
(AC127746) Rattus norvegicus clone CH230-28J15, *** SEQUENCI... 46 1.4 1
(AC126641) Rattus norvegicus clone CH230-119F19, *** SEQUENC... 46 1.4 1
(AC125588) Rattus norvegicus clone CH230-1A24, *** SEQUENCIN... 46 1.4 1
(AC122586) Rattus norvegicus clone CH230-172P5, *** SEQUENCI... 46 1.4 1
(AC112763) Rattus norvegicus clone CH230-246P24, *** SEQUENC... 46 1.4 1
(AC109031) Rattus norvegicus clone CH230-47A17, *** SEQUENCI... 46 1.4 1
(AC108601) Rattus norvegicus clone CH230-301M18, *** SEQUENC... 46 1.4 1
(AC099218) Rattus norvegicus clone CH230-176E12, WORKING DRA... 46 1.4 1
(AC094987) Rattus norvegicus clone CH230-6E15, *** SEQUENCIN... 46 1.4 1
(FP326672) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.4 1
(FP102398) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.4 1
(CU929411) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.4 1
(CU929383) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.4 1
(AC080190) Homo sapiens chromosome 7 clone RP11-962B9, WORKI... 46 1.4 1
(CR774190) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.4 1
(CR769779) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.4 1
(BX927319) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***... 46 1.4 1
(AC218082) Sus scrofa clone RP44-415M6, WORKING DRAFT SEQUEN... 46 1.4 1
(AC218081) Sus scrofa clone RP44-195D13, WORKING DRAFT SEQUE... 46 1.4 1
(AC192306) Nomascus leucogenys leucogenys clone CH271-208C7,... 46 1.4 1
(AC184736) Callicebus moloch clone LB5-19G17, WORKING DRAFT ... 46 1.4 1
(AC174416) Callicebus moloch clone LB5-165K4, WORKING DRAFT ... 46 1.4 1
(AC174390) Aotus nancymaae clone CH258-252L8, WORKING DRAFT ... 46 1.4 1
(AC171381) Oryctolagus cuniculus clone LB1-197F15, WORKING D... 46 1.4 1
(AC014683) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 46 1.4 1
(AC011764) Drosophila melanogaster strain y chromosome 2 clo... 46 1.4 1
(BH010946) ep72b04.g1 TO1000 Brassica oleracea genomic clone... 46 1.4 1
(AQ631404) RPCI-11-482F20.TV RPCI-11 Homo sapiens genomic cl... 46 1.4 1
(EK330167) 1095467021423 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.4 1
(DU722786) pyq46h09.g1 VT847 Caenorhabditis briggsae genomic... 46 1.4 1
(CG030956) PUIFM10TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 46 1.4 1
(CE278100) tigr-gss-dog-17000333683910 Dog Library Canis lup... 46 1.4 1
(CC817968) 1O0004C10F Oxytricha plasmid UUGC1O library Sterk... 46 1.4 1
(BZ878719) CH240_293K23.TV CHORI-240 Bos taurus genomic clon... 46 1.4 1
(AV376113) Mus musculus adult male cecum cDNA, RIKEN full-le... 46 1.4 1
(AV265152) Mus musculus adult male testis cDNA, RIKEN full-l... 46 1.4 1
(DN136827) ACAB-aaa78k11.g1 Hydra UCI6- barcoded EST's Hydra... 46 1.4 1
(DB599321) Halocynthia roretzi cDNA clone:ma324c21, 3' end. 46 1.4 1
(CN569526) tag53a03.y1 Hydra EST -Kiel 2 Hydra magnipapillat... 46 1.4 1
(FM929922) Brachionus plicatilis EST 5' end, clone sb103P004... 46 1.4 1
(CU928380) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 1.4 4
(AM488253) Vitis vinifera contig VV78X192978.4, whole genome... 38 1.4 2
(CU179668) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 1.4 5
(AM435801) Vitis vinifera contig VV78X098838.4, whole genome... 38 1.4 2
(CT025684) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 1.4 2
(BX927071) Zebrafish DNA sequence from clone DKEY-286O23 in ... 44 1.4 6
(CU469527) Zebrafish DNA sequence from clone CH1073-79A10 in... 42 1.4 2
(AC192578) Pan troglodytes BAC clone CH251-310G10 from chrom... 36 1.4 5
(AC154053) Ictalurus punctatus clone CH212-130D21, WORKING D... 40 1.4 5
(AL731783) Mouse DNA sequence from clone RP23-124E18 on chro... 40 1.4 3
(AC012119) Homo sapiens chromosome 8, clone RP11-175E9, comp... 42 1.4 2
(BM265254) fw56g03.x1 Sugano SJD adult male Danio rerio cDNA... 36 1.4 2
(BX324140) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 1.5 5
(AC196925) Rhinolophus ferrumequinum clone VMRC7-380F7, WORK... 44 1.5 2
(CR382295) Zebrafish DNA sequence from clone DKEYP-15G12 in ... 38 1.5 4
(AC159684) Bos taurus clone CH240-51B17, WORKING DRAFT SEQUE... 32 1.5 6
(AC195614) Macaca mulatta chromosome UNK clone CH250-74L17, ... 42 1.5 2
(CU062613) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.5 4
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 32 1.5 7
(AC104609) Drosophila melanogaster X BAC RP98-39F18 (Roswell... 42 1.5 2
(AC105247) Homo sapiens chromosome 18, clone CTD-2545G7, com... 38 1.5 2
(AC113382) Homo sapiens chromosome 5 clone RP11-325L7, compl... 42 1.5 2
(CU694527) Zebrafish DNA sequence from clone ZFOS-844F9. 40 1.5 2
(AU053361) Dictyostelium discoideum slug cDNA, clone SLI462. 36 1.5 2
(CU928371) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 1.5 6
(CU862023) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 1.5 7
(BX465199) Zebrafish DNA sequence from clone DKEY-84I7 in li... 40 1.5 3
(AC138469) Homo sapiens chromosome 19 clone RP11-189C24, ***... 42 1.5 2
(BX548071) Zebrafish DNA sequence from clone DKEY-25L23 in l... 44 1.5 5
(CR394538) Zebrafish DNA sequence from clone DKEY-189I22 in ... 34 1.5 5
(AE014188) Plasmodium falciparum 3D7 chromosome 12, complete... 36 1.5 4
(AC138995) Homo sapiens chromosome 5 clone RP13-853L20, WORK... 40 1.6 6
(AL359699) Human DNA sequence from clone RP11-130F5 on chrom... 36 1.6 3
(AC181807) Strongylocentrotus purpuratus clone R3-1025B23, W... 32 1.6 6
(CR450842) Zebrafish DNA sequence from clone CH211-280C16 in... 38 1.6 5
(AC141623) Homo sapiens chromosome 16 clone RP11-994E3, WORK... 42 1.6 2
(CU896657) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 1.6 2
(AC136441) Homo sapiens chromosome 16 clone RP11-460L21, WOR... 42 1.6 2
(CR536612) Zebrafish DNA sequence from clone DKEY-1O1 in lin... 36 1.6 5
(AC162530) Bos taurus clone CH240-124B3, WORKING DRAFT SEQUE... 42 1.6 3
(AC140872) Homo sapiens chromosome 16 clone RP11-1151K24, WO... 42 1.6 2
(CR628401) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 1.6 5
(AE017332) Mycoplasma hyopneumoniae 232, complete genome. 32 1.6 12
(CT990627) Zebrafish DNA sequence from clone CH73-312H4 in l... 38 1.6 4
(CU151849) Pig DNA sequence from clone CH242-198O5 on chromo... 38 1.6 4
(AC135050) Homo sapiens chromosome 16 clone RP11-196G11, com... 42 1.6 2
(AC187005) Canis Familiaris chromosome 16, clone XX-444B7, c... 34 1.6 7
(AC098004) Rattus norvegicus clone CH230-104E16, WORKING DRA... 32 1.7 5
(CR550305) Zebrafish DNA sequence from clone DKEY-205E15 in ... 40 1.7 5
(AC178903) Strongylocentrotus purpuratus clone R3-3114N5, WO... 32 1.7 7
(CU550718) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 42 1.7 3
(AC162610) Mus musculus chromosome 5, clone RP23-314N3, comp... 36 1.7 6
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome. 32 1.7 17
(AM431952) Vitis vinifera contig VV78X098427.2, whole genome... 36 1.7 3
(AC135044) Homo sapiens chromosome 16 clone CTD-2551B20, WOR... 42 1.8 2
(AC148721) Ictalurus punctatus clone CH212-49F22, WORKING DR... 36 1.8 5
(BX004870) Zebrafish DNA sequence from clone CH211-168H9 in ... 36 1.8 6
(GC700609) Sequence 15854 from patent US 6812339. 36 1.8 3
(AY192161) Homo sapiens plasminogen (PLG) gene, complete cds. 36 1.8 3
(CR853289) Zebrafish DNA sequence from clone DKEYP-19G6 in l... 40 1.8 5
(AL743946) Danio rerio genomic clone DKEY-1L2, genomic surve... 34 1.8 2
(CR383674) Zebrafish DNA sequence from clone DKEY-17G17 in l... 40 1.8 4
(CR318628) Zebrafish DNA sequence from clone DKEY-148N22 in ... 40 1.8 3
(AC073473) Homo sapiens chromosome 14 clone RP11-634B2, WORK... 36 1.8 4
(AC136207) Canis lupus familiaris clone RP81-22K3, WORKING D... 32 1.8 6
(CU468947) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 1.8 8
(BX005102) Zebrafish DNA sequence from clone CH211-105H13 in... 40 1.8 6
(BX537319) Zebrafish DNA sequence from clone CH211-248N8 in ... 44 1.9 2
(CU481866) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 1.9 6
(AC178769) Strongylocentrotus purpuratus clone R3-19H10, WOR... 34 1.9 5
(AC011680) Homo sapiens clone RP11-14H17, WORKING DRAFT SEQU... 34 1.9 5
(AC166021) Oryctolagus cuniculus clone LB1-280H21, WORKING D... 44 1.9 2
(AC103930) Mus musculus chromosome 5, clone RP23-238D18, com... 36 1.9 7
(AC013737) Homo sapiens chromosome 10 clone RP11-313B15, com... 36 1.9 7
(CT009764) Mouse DNA sequence from clone RP23-173E21 on chro... 38 1.9 2
(FP102783) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 1.9 3
(CR792443) Zebrafish DNA sequence from clone DKEY-52K1 in li... 42 1.9 4
(CQ869831) Sequence 252 from Patent WO2004074320. 40 2.0 4
(CR385062) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***... 34 2.0 4
(CU464185) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 2.0 5
(CT990539) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 2.0 6
(AC037492) Homo sapiens chromosome 8, clone RP11-38H17, comp... 40 2.0 5
(AL162572) Human DNA sequence *** SEQUENCING CANCELLED *** f... 38 2.0 5
(CR377220) Zebrafish DNA sequence from clone DKEY-279E10 in ... 34 2.0 5
(FD331313) CBPN1616.g1 CBPN: Subtracted channel catfish cDNA... 38 2.0 2
(FD051720) CBPO23336.g1 CBPO: Normalized channel catfish cDN... 38 2.0 2
(AC153607) Mus musculus 6 BAC RP23-100I21 (Roswell Park Canc... 40 2.0 4

>(C92804) Dictyostelium discoideum slug cDNA, clone SSF365.
Length = 519

Score = 523 bits (264), Expect(2) = 0.0
Identities = 267/267 (100%)
Strand = Plus / Plus


Query: 193 gatggtagttttgatgcaaatgcaacaacagaatttaaaaagaaatattataaaatagca 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gatggtagttttgatgcaaatgcaacaacagaatttaaaaagaaatattataaaatagca 252


Query: 253 tttattggttgttgttgttttttgacacgttcaattataacaacaattacagtttttaaa 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tttattggttgttgttgttttttgacacgttcaattataacaacaattacagtttttaaa 312


Query: 313 ttaactgatccatttggtataaaagatattatatattatccagttttagaaattattcca 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttaactgatccatttggtataaaagatattatatattatccagttttagaaattattcca 372


Query: 373 attttattacttttntatattacaaatggacttcataagtatgctggaactttaggtgaa 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 attttattacttttntatattacaaatggacttcataagtatgctggaactttaggtgaa 432


Query: 433 attaatgaagaaactggacttttgaaa 459
|||||||||||||||||||||||||||
Sbjct: 433 attaatgaagaaactggacttttgaaa 459

Score = 283 bits (143), Expect(2) = 0.0
Identities = 143/143 (100%)
Strand = Plus / Plus


Query: 1 atttatacagttatgttaataatggtaattcttgaatttaccttatcaccaaatgaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atttatacagttatgttaataatggtaattcttgaatttaccttatcaccaaatgaaaaa 60


Query: 61 gcttcagttgatataccagattctccagcacaagtaattattcaaatgtttattgcattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcttcagttgatataccagattctccagcacaagtaattattcaaatgtttattgcattt 120


Query: 121 atttatttatttgcaagttcagt 143
|||||||||||||||||||||||
Sbjct: 121 atttatttatttgcaagttcagt 143

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 702,349,531
Number of extensions: 59244195
Number of successful extensions: 9066724
Number of sequences better than 10.0: 1519
Length of query: 518
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 495
Effective length of database: 102,190,702,835
Effective search space: 50584397903325
Effective search space used: 50584397903325
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 8. 1
Homology vs Protein
Query= Contig-U05111-1 (Contig-U05111-1Q) /CSM_Contig/Contig-U05111-1Q.Seq.d
(518 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 495,897,123
Number of extensions: 6330908
Number of successful extensions: 10185
Number of sequences better than 10.0: 0
Number of HSP's gapped: 10179
Number of HSP's successfully gapped: 0
Length of query: 172
Length of database: 1,061,185,681
Length adjustment: 119
Effective length of query: 53
Effective length of database: 672,240,369
Effective search space: 35628739557
Effective search space used: 35628739557
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 1.00 gvh: 0.57 alm: 0.25 top: 0.33 tms: 0.27 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

44.0 %: endoplasmic reticulum
20.0 %: mitochondrial
12.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: cytoplasmic
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for Contig-U05111-1 is end

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0