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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05107-1
Contig ID Contig-U05107-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U05107-1 (Contig-U05107-1Q) /CSM_Contig/Contig-U05107-1Q.Seq.d
TTTAATTATTAATAATTTTTTTTTTTTTTTCTATTAAAGGATAAAAGTAA
AAATGAAGAAAAATTAAAAAAGATTATAGCAAAATATTTAGGTACAAAAA
TAGAGAAAATCGAACTTTCAACATTAATTACCAATACTGCAGAAACAAGA
CCATATGGGAAACTATTTGAATTATATGCTAAAATAGAGAAAGAGTTTGA
TATTCAAGTACCAGTTGAAGATATGGATAAAATTAAAACAGTATTAAATT
GTTTAAATTATATAAATTATCACCAAGAGAATTAATAAATAAATATATAA
ATATA
Gap no gap
Contig length 305
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 4817113
End point 4816808
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U05107
List of clone(s) 

est1=SSF343F,1,306
Translated Amino Acid sequence 
fny**FFFFFLLKDKSKNEEKLKKIIAKYLGTKIEKIELSTLITNTAETRPYGKLFELYA
KIEKEFDIQVPVEDMDKIKTVLNCLNYINYHQEN**ini*i
Translated Amino Acid sequence (All Frames) 
Frame A:
fny**FFFFFLLKDKSKNEEKLKKIIAKYLGTKIEKIELSTLITNTAETRPYGKLFELYA
KIEKEFDIQVPVEDMDKIKTVLNCLNYINYHQEN**ini*i


Frame B:
liinnfffffy*rikvkmkkn*krl*qni*vqk*rksnfqh*lpilqkqdhmgnylnyml
k*rkslifkyqlkiwiklkqy*iv*ii*iitkrink*iyky


Frame C:
*lliiffffsikg*k*k*rkikkdyskifryknrenrtfninyqycrnktiweti*iic*
nrerv*yssts*ryg*n*nsiklfklyklsprelinkyini
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05107-1 (Contig-U05107-1Q)
/CSM_Contig/Contig-U05107-1Q.Seq.d
         (305 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05107-1 (Contig-U05107-1Q) /CSM_Contig/Conti...   335  2e-92
Contig-U14733-1 (Contig-U14733-1Q) /CSM_Contig/Conti...    34  0.082
Contig-U10359-1 (Contig-U10359-1Q) /CSM_Contig/Conti...    34  0.082
Contig-U09285-1 (Contig-U09285-1Q) /CSM_Contig/Conti...    34  0.082
Contig-U08834-1 (Contig-U08834-1Q) /CSM_Contig/Conti...    34  0.082
Contig-U14899-1 (Contig-U14899-1Q) /CSM_Contig/Conti...    32  0.33
Contig-U12793-1 (Contig-U12793-1Q) /CSM_Contig/Conti...    32  0.33
Contig-U11673-1 (Contig-U11673-1Q) /CSM_Contig/Conti...    32  0.33
Contig-U11021-1 (Contig-U11021-1Q) /CSM_Contig/Conti...    32  0.33
Contig-U11005-1 (Contig-U11005-1Q) /CSM_Contig/Conti...    32  0.33

>Contig-U05107-1 (Contig-U05107-1Q) /CSM_Contig/Contig-U05107-1Q.Seq.d
          Length = 305

 Score =  335 bits (169), Expect = 2e-92
 Identities = 169/169 (100%)
 Strand = Plus / Plus

                                                                       
Query: 85  tatttaggtacaaaaatagagaaaatcgaactttcaacattaattaccaatactgcagaa 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  tatttaggtacaaaaatagagaaaatcgaactttcaacattaattaccaatactgcagaa 144

                                                                       
Query: 145 acaagaccatatgggaaactatttgaattatatgctaaaatagagaaagagtttgatatt 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 acaagaccatatgggaaactatttgaattatatgctaaaatagagaaagagtttgatatt 204

                                                            
Query: 205 caagtaccagttgaagatatggataaaattaaaacagtattaaattgtt 253
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 caagtaccagttgaagatatggataaaattaaaacagtattaaattgtt 253


 Score = 30.2 bits (15), Expect = 1.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                         
Query: 1  tttaattattaataa 15
          |||||||||||||||
Sbjct: 1  tttaattattaataa 15


>Contig-U14733-1 (Contig-U14733-1Q) /CSM_Contig/Contig-U14733-1Q.Seq.d
          Length = 1003

 Score = 34.2 bits (17), Expect = 0.082
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 165 atttgaattatatgctaaaat 185
           |||||||||||||||| ||||
Sbjct: 510 atttgaattatatgctgaaat 530


>Contig-U10359-1 (Contig-U10359-1Q) /CSM_Contig/Contig-U10359-1Q.Seq.d
          Length = 763

 Score = 34.2 bits (17), Expect = 0.082
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 159 gaaactatttgaattat 175
           |||||||||||||||||
Sbjct: 491 gaaactatttgaattat 475


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3464
Number of Sequences: 6905
Number of extensions: 3464
Number of successful extensions: 1206
Number of sequences better than 10.0: 87
length of query: 305
length of database: 5,674,871
effective HSP length: 15
effective length of query: 290
effective length of database: 5,571,296
effective search space: 1615675840
effective search space used: 1615675840
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7.12
Homology vs DNA 
Query= Contig-U05107-1 (Contig-U05107-1Q) /CSM_Contig/Contig-U05107-1Q.Seq.d
         (305 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU072895) Dictyostelium discoideum slug cDNA, clone SSF343.      258   9e-67  2
(FI316834) AdH1164-CPY2-O18TR AdH1 Arachis duranensis genomi...    34   0.56   2
(FI306083) AdH1179-CPY2-F24TR AdH1 Arachis duranensis genomi...    34   0.56   2
(AL844222) Mouse DNA sequence from clone RP23-44P13 on chrom...    46   0.77   1
(X61930) P. falciparum gene for major surface antigen (MSA-1).     46   0.77   1
(X05624) Plasmodium falciparum p190 gene for p190 surface an...    46   0.77   1
(S68329) Plasmodium falciparum major merozoite surface antig...    46   0.77   1
(M86957) Plasmodium falciparum major merozoite surface antig...    46   0.77   1
(M86956) Plasmodium falciparum major merozoite surface antig...    46   0.77   1
(M86954) Plasmodium falciparum major merozoite surface antig...    46   0.77   1
(M86953) Plasmodium falciparum major merozoite surface antig...    46   0.77   1
(M86952) Plasmodium falciparum major merozoite surface antig...    46   0.77   1
(M86951) Plasmodium falciparum major merozoite surface antig...    46   0.77   1
(M86948) Plasmodium falciparum major merozoite surface antig...    46   0.77   1
(M86946) Plasmodium falciparum major merozoite surface antig...    46   0.77   1
(M86940) Plasmodium falciparum major merozoite surface antig...    46   0.77   1
(M86938) Plasmodium falciparum major merozoite surface antig...    46   0.77   1
(M77737) Plasmodium falciparum clone 814C major merozoite su...    46   0.77   1
(M77734) Plasmodium falciparum clone 946 major merozoite sur...    46   0.77   1
(M77732) Plasmodium falciparum clone 841B major merozoite su...    46   0.77   1
(M77731) Plasmodium falciparum clone 841A major merozoite su...    46   0.77   1
(M77730) Plasmodium falciparum clone 834B major merozoite su...    46   0.77   1
(M77729) Plasmodium falciparum clone 814A major merozoite su...    46   0.77   1
(M77728) Plasmodium falciparum clone 947 major merozoite sur...    46   0.77   1
(M77727) Plasmodium falciparum clone 843 major merozoite sur...    46   0.77   1
(M77726) Plasmodium falciparum clone 842 major merozoite sur...    46   0.77   1
(M77724) Plasmodium falciparum clone 836 major merozoite sur...    46   0.77   1
(M77722) Plasmodium falciparum clone 835A major merozoite su...    46   0.77   1
(M77714) Plasmodium falciparum clone 807 major merozoite sur...    46   0.77   1
(M19143) P.falciparum major merozoite surface antigen (PMMSA...    46   0.77   1
(L10380) Plasmodium falciparum (clone 841D) major merozoite ...    46   0.77   1
(DQ377137) Plasmodium falciparum isolate 704AB merozoite sur...    46   0.77   1
(DQ377136) Plasmodium falciparum isolate S599 merozoite surf...    46   0.77   1
(DQ377135) Plasmodium falciparum isolate 620B merozoite surf...    46   0.77   1
(DQ377134) Plasmodium falciparum isolate 706B merozoite surf...    46   0.77   1
(DQ377133) Plasmodium falciparum isolate 687H merozoite surf...    46   0.77   1
(AY342369) Plasmodium falciparum isolate CH18 merozoite surf...    46   0.77   1
(AY342368) Plasmodium falciparum isolate CH17 merozoite surf...    46   0.77   1
(AY342365) Plasmodium falciparum isolate CH14 merozoite surf...    46   0.77   1
(AY342364) Plasmodium falciparum isolate CH13 merozoite surf...    46   0.77   1
(AY138512) Plasmodium falciparum isolate CH03 merozoite surf...    46   0.77   1
(AY138506) Plasmodium falciparum isolate CH08 merozoite surf...    46   0.77   1
(AY138152) Plasmodium falciparum isolate CH07 merozoite surf...    46   0.77   1
(AY138151) Plasmodium falciparum isolate CH06 merozoite surf...    46   0.77   1
(AY138150) Plasmodium falciparum isolate CH05 merozoite surf...    46   0.77   1
(AY138149) Plasmodium falciparum isolate CH04 merozoite surf...    46   0.77   1
(AF218248) Plasmodium falciparum major merozoite surface ant...    46   0.77   1
(AF062348) Plasmodium falciparum strain HN1 merozoite surfac...    46   0.77   1
(AF061151) Plasmodium falciparum isolate IFA18 merozoite sur...    46   0.77   1
(AF061148) Plasmodium falciparum isolate IFA5.13 merozoite s...    46   0.77   1
(AF061145) Plasmodium falciparum isolate HN5 merozoite surfa...    46   0.77   1
(AF061144) Plasmodium falciparum isolate HN3 merozoite surfa...    46   0.77   1
(AF061142) Plasmodium falciparum isolate HN1 merozoite surfa...    46   0.77   1
(AF061141) Plasmodium falciparum isolate IFA125 merozoite su...    46   0.77   1
(AF061139) Plasmodium falciparum isolate IFA11 merozoite sur...    46   0.77   1
(AF061138) Plasmodium falciparum isolate IFA10 merozoite sur...    46   0.77   1
(AF061137) Plasmodium falciparum isolate IFA9.10 merozoite s...    46   0.77   1
(AF061136) Plasmodium falciparum isolate IFA9.2 merozoite su...    46   0.77   1
(AF061130) Plasmodium falciparum isolate IFA93 merozoite sur...    46   0.77   1
(AF061129) Plasmodium falciparum isolate IFA78 merozoite sur...    46   0.77   1
(AF061128) Plasmodium falciparum isolate IFA17.26 merozoite ...    46   0.77   1
(AF061127) Plasmodium falciparum isolate IFA5.15 merozoite s...    46   0.77   1
(AF061126) Plasmodium falciparum isolate IFA16 merozoite sur...    46   0.77   1
(AF061125) Plasmodium falciparum isolate IFA6 merozoite surf...    46   0.77   1
(AF061124) Plasmodium falciparum isolate IFA17.25 merozoite ...    46   0.77   1
(AF061123) Plasmodium falciparum isolate IFA92 merozoite sur...    46   0.77   1
(AF061122) Plasmodium falciparum merozoite surface protein 1...    46   0.77   1
(AF061121) Plasmodium falciparum isolate IFA4 merozoite surf...    46   0.77   1
(AF061120) Plasmodium falciparum isolate IFA2.15 merozoite s...    46   0.77   1
(AF061119) Plasmodium falciparum isolate IFA2.12 merozoite s...    46   0.77   1
(AB300615) Plasmodium falciparum msp1 gene for merozoite sur...    46   0.77   1
(AB300614) Plasmodium falciparum msp1 gene for merozoite sur...    46   0.77   1
(AB276018) Plasmodium falciparum msp1 gene for merozoite sur...    46   0.77   1
(AB276016) Plasmodium falciparum msp1 gene for merozoite sur...    46   0.77   1
(AB276013) Plasmodium falciparum msp1 gene for merozoite sur...    46   0.77   1
(AB276010) Plasmodium falciparum msp1 gene for merozoite sur...    46   0.77   1
(AB276008) Plasmodium falciparum msp1 gene for merozoite sur...    46   0.77   1
(AB276007) Plasmodium falciparum msp1 gene for merozoite sur...    46   0.77   1
(AB276005) Plasmodium falciparum msp1 gene for merozoite sur...    46   0.77   1
(AB276002) Plasmodium falciparum msp1 gene for merozoite sur...    46   0.77   1
(AB116601) Plasmodium falciparum msp1 gene for merozoite sur...    46   0.77   1
(AB116600) Plasmodium falciparum msp1 gene for merozoite sur...    46   0.77   1
(AB116599) Plasmodium falciparum msp1 gene for merozoite sur...    46   0.77   1
(AB116598) Plasmodium falciparum msp1 gene for merozoite sur...    46   0.77   1
(AB116597) Plasmodium falciparum msp1 gene for merozoite sur...    46   0.77   1
(AB116596) Plasmodium falciparum msp1 gene for merozoite sur...    46   0.77   1
(AC198577) Spermophilus tridecemlineatus clone VMRC20-582P2,...    46   0.77   1
(AC198570) Spermophilus tridecemlineatus clone VMRC20-276J20...    46   0.77   1
(FI510942) 078-TKN-MI_027_F24_Sp6 078-TKN-MI Meleagris gallo...    46   0.77   1
(AC087341) Homo sapiens chromosome 8, clone RP11-381I15, com...    44   3.0    1
(AL161934) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   3.0    1
(CD238574) FNPBCB03 FNP Homo sapiens cDNA, mRNA sequence.          44   3.0    1
(AC188602) Pan troglodytes BAC clone CH251-680O13 from chrom...    32   5.6    2
(AC195644) Pan troglodytes BAC clone CH251-267D20 from chrom...    32   5.7    2
(AC091770) Homo sapiens BAC clone RP11-655M5 from 7, complet...    32   5.9    2
(EI209330) MUGQ_CH252P201P09Sp6_CN316_033 CHORI-252 Vervet M...    32   7.7    2
(AC150527) Bos taurus clone CH240-105E11, WORKING DRAFT SEQU...    38   9.4    2

>(AU072895) Dictyostelium discoideum slug cDNA, clone SSF343.
          Length = 240

 Score =  258 bits (130), Expect(2) = 9e-67
 Identities = 130/130 (100%)
 Strand = Plus / Plus


Query: 111 cgaactttcaacattaattaccaatactgcagaaacaagaccatatgggaaactatttga 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 cgaactttcaacattaattaccaatactgcagaaacaagaccatatgggaaactatttga 170


Query: 171 attatatgctaaaatagagaaagagtttgatattcaagtaccagttgaagatatggataa 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 attatatgctaaaatagagaaagagtttgatattcaagtaccagttgaagatatggataa 230


Query: 231 aattaaaaca 240
           ||||||||||
Sbjct: 231 aattaaaaca 240

 Score = 30.2 bits (15), Expect(2) = 9e-67
 Identities = 15/15 (100%)
 Strand = Plus / Plus


Query: 1  tttaattattaataa 15
          |||||||||||||||
Sbjct: 1  tttaattattaataa 15

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 204,764,969
Number of extensions: 13266346
Number of successful extensions: 1001947
Number of sequences better than 10.0: 97
Length of query: 305
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 282
Effective length of database: 102,190,702,835
Effective search space: 28817778199470
Effective search space used: 28817778199470
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 8. 1
Homology vs Protein 
Query= Contig-U05107-1 (Contig-U05107-1Q) /CSM_Contig/Contig-U05107-1Q.Seq.d
         (305 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001337_279(CP001337|pid:none) Chloroflexus aggregans DSM 9485,...    44   0.001
AE017340_1335(AE017340|pid:none) Idiomarina loihiensis L2TR, com...    43   0.003
(Q1RKB8) RecName: Full=Acyl carrier protein;          Short=ACP;...    42   0.007
(Q126J2) RecName: Full=Acyl carrier protein;          Short=ACP;...    42   0.007
CP000679_1533(CP000679|pid:none) Caldicellulosiruptor saccharoly...    42   0.007
(A1TLE0) RecName: Full=Acyl carrier protein;          Short=ACP;...    42   0.009
(B0TGW1) RecName: Full=Acyl carrier protein;          Short=ACP;...    42   0.009
CP001230_500(CP001230|pid:none) Persephonella marina EX-H1, comp...    41   0.012
(P80918) RecName: Full=Acyl carrier protein;          Short=ACP;       41   0.012
CP001393_1092(CP001393|pid:none) Anaerocellum thermophilum DSM 6...    41   0.012
(Q1ICY6) RecName: Full=Acyl carrier protein;          Short=ACP;...    41   0.012
(B3E2J4) RecName: Full=Acyl carrier protein;          Short=ACP;...    41   0.015
CP000382_1320(CP000382|pid:none) Clostridium novyi NT, complete ...    41   0.015
(Q24U44) RecName: Full=Acyl carrier protein;          Short=ACP;...    40   0.020
NRL(1ACP) acyl carrier protein (NMR, 2 structures) - Escherichia...    40   0.020
(A7HDZ1) RecName: Full=Acyl carrier protein;          Short=ACP;...    40   0.020
(A6T7F4) RecName: Full=Acyl carrier protein;          Short=ACP;...    40   0.020
(A4VMS0) RecName: Full=Acyl carrier protein;          Short=ACP;...    40   0.026
AP009049_1291(AP009049|pid:none) Clostridium kluyveri NBRC 12016...    40   0.026
(B2VDK4) RecName: Full=Acyl carrier protein;          Short=ACP;...    40   0.026
AP010872_349(AP010872|pid:none) Candidatus Ishikawaella capsulat...    40   0.026
(P80923) RecName: Full=Acyl carrier protein;          Short=ACP;...    40   0.026
CR954246_1765(CR954246|pid:none) Pseudoalteromonas haloplanktis ...    40   0.034
(A1VRU2) RecName: Full=Acyl carrier protein;          Short=ACP;...    40   0.034
CP000382_46(CP000382|pid:none) Clostridium novyi NT, complete ge...    40   0.034
CP001107_3064(CP001107|pid:none) Eubacterium rectale ATCC 33656,...    40   0.034
CP000113_4645(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    39   0.045
AM412317_2451(AM412317|pid:none) Clostridium botulinum A str. AT...    39   0.045
(Q97IA5) RecName: Full=Acyl carrier protein;          Short=ACP;...    39   0.045
AP006840_1452(AP006840|pid:none) Symbiobacterium thermophilum IA...    39   0.045
(A1WMX2) RecName: Full=Acyl carrier protein;          Short=ACP;...    39   0.045
CP000251_2739(CP000251|pid:none) Anaeromyxobacter dehalogenans 2...    39   0.045
(B2V6T8) RecName: Full=Acyl carrier protein;          Short=ACP;...    39   0.058
(Q1QX53) RecName: Full=Acyl carrier protein;          Short=ACP;...    39   0.058
AE016830_2689(AE016830|pid:none) Enterococcus faecalis V583, com...    39   0.076
CP001616_2160(CP001616|pid:none) Tolumonas auensis DSM 9187, com...    39   0.076
(Q3B6L1) RecName: Full=Acyl carrier protein;          Short=ACP;...    39   0.076
CP000482_1716(CP000482|pid:none) Pelobacter propionicus DSM 2379...    39   0.076
(Q65RC8) RecName: Full=Acyl carrier protein;          Short=ACP;...    39   0.076
CP001101_164(CP001101|pid:none) Chlorobium phaeobacteroides BS1,...    39   0.076
(A4TLS0) RecName: Full=Acyl carrier protein;          Short=ACP;...    38   0.099
AB211310_1(AB211310|pid:none) Streptomyces lasaliensis fabC gene...    38   0.099
(Q21K87) RecName: Full=Acyl carrier protein;          Short=ACP;...    38   0.099
(A5UAZ7) RecName: Full=Acyl carrier protein;          Short=ACP;...    38   0.099
(Q2JQZ8) RecName: Full=Acyl carrier protein;          Short=ACP;...    38   0.099
CP001472_1698(CP001472|pid:none) Acidobacterium capsulatum ATCC ...    38   0.13
(Q7VR21) RecName: Full=Acyl carrier protein;          Short=ACP;...    38   0.13
CP000058_1573(CP000058|pid:none) Pseudomonas syringae pv. phaseo...    38   0.13
CP000721_1161(CP000721|pid:none) Clostridium beijerinckii NCIMB ...    38   0.13
CP001229_51(CP001229|pid:none) Sulfurihydrogenibium azorense Az-...    38   0.13
CP000232_924(CP000232|pid:none) Moorella thermoacetica ATCC 3907...    38   0.13
(Q9CJS5) RecName: Full=Acyl carrier protein;          Short=ACP;...    38   0.13
(A7NP13) RecName: Full=Acyl carrier protein;          Short=ACP;...    38   0.13
CP000075_1647(CP000075|pid:none) Pseudomonas syringae pv. syring...    37   0.17
CP000826_1900(CP000826|pid:none) Serratia proteamaculans 568, co...    37   0.17
(B0UUZ3) RecName: Full=Acyl carrier protein;          Short=ACP;...    37   0.17
(Q65JQ6) RecName: Full=Acyl carrier protein;          Short=ACP;...    37   0.17
(Q5WFM5) RecName: Full=Acyl carrier protein;          Short=ACP;...    37   0.17
(P80922) RecName: Full=Acyl carrier protein;          Short=ACP;       37   0.17
(A4XSS7) RecName: Full=Acyl carrier protein;          Short=ACP;...    37   0.17
(B4S3N7) RecName: Full=Acyl carrier protein;          Short=ACP;...    37   0.22
CP001111_873(CP001111|pid:none) Stenotrophomonas maltophilia R55...    37   0.22
(B4ETD0) RecName: Full=Acyl carrier protein;          Short=ACP;...    37   0.22
(Q606L6) RecName: Full=Acyl carrier protein;          Short=ACP;...    37   0.22
CP000116_1548(CP000116|pid:none) Thiobacillus denitrificans ATCC...    37   0.22
(A3N3B5) RecName: Full=Acyl carrier protein;          Short=ACP;...    37   0.22
(B0KF56) RecName: Full=Acyl carrier protein;          Short=ACP;...    37   0.22
CP000687_1799(CP000687|pid:none) Actinobacillus pleuropneumoniae...    37   0.22
(Q6MLJ8) RecName: Full=Acyl carrier protein;          Short=ACP;...    37   0.29
(B3EED1) RecName: Full=Acyl carrier protein;          Short=ACP;...    37   0.29
(A1K5Y8) RecName: Full=Acyl carrier protein;          Short=ACP;       37   0.29
(A1STW4) RecName: Full=Acyl carrier protein;          Short=ACP;...    36   0.38
S65033_1(S65033|pid:none) acyl carrier protein [Escherichia coli...    36   0.38
CP000699_87(CP000699|pid:none) Sphingomonas wittichii RW1, compl...    36   0.38
CP000812_1768(CP000812|pid:none) Thermotoga lettingae TMO, compl...    36   0.38
CP001056_1172(CP001056|pid:none) Clostridium botulinum B str. Ek...    36   0.38
(Q8EDH4) RecName: Full=Acyl carrier protein;          Short=ACP;...    36   0.38
(Q3AQ12) RecName: Full=Acyl carrier protein;          Short=ACP;...    36   0.38
(Q39V90) RecName: Full=Acyl carrier protein;          Short=ACP;...    36   0.38
CP000437_916(CP000437|pid:none) Francisella tularensis subsp. ho...    36   0.38
(Q0VQN0) RecName: Full=Acyl carrier protein;          Short=ACP;...    36   0.38
AY872011_1(AY872011|pid:none) Synthetic construct hypothetical p...    36   0.38
CP001078_1119(CP001078|pid:none) Clostridium botulinum E3 str. A...    36   0.38
(Q12LV4) RecName: Full=Acyl carrier protein;          Short=ACP;...    36   0.38
(B3PEV2) RecName: Full=Acyl carrier protein;          Short=ACP;...    36   0.38
AM743169_974(AM743169|pid:none) Stenotrophomonas maltophilia K27...    36   0.38
AL939112_134(AL939112|pid:none) Streptomyces coelicolor A3(2) co...    36   0.49
(B4SBB2) RecName: Full=Acyl carrier protein;          Short=ACP;...    36   0.49
AP009493_5106(AP009493|pid:none) Streptomyces griseus subsp. gri...    36   0.49
AE014188_83(AE014188|pid:none) Plasmodium falciparum 3D7 chromos...    36   0.49
(Q8DHS3) RecName: Full=Acyl carrier protein;          Short=ACP;...    36   0.49
(Q1H165) RecName: Full=Acyl carrier protein;          Short=ACP;...    36   0.49
(Q8KAN9) RecName: Full=Acyl carrier protein;          Short=ACP;...    36   0.49
CP000961_2026(CP000961|pid:none) Shewanella woodyi ATCC 51908, c...    36   0.49
CP001034_1345(CP001034|pid:none) Natranaerobius thermophilus JW/...    36   0.49
(A5GF63) RecName: Full=Acyl carrier protein;          Short=ACP;...    36   0.49
AE013598_867(AE013598|pid:none) Xanthomonas oryzae pv. oryzae KA...    36   0.49
CP000153_1605(CP000153|pid:none) Sulfurimonas denitrificans DSM ...    36   0.49
CP001390_2587(CP001390|pid:none) Geobacter sp. FRC-32, complete ...    36   0.49
CP000606_1598(CP000606|pid:none) Shewanella loihica PV-4, comple...    36   0.49
(B0RYI4) RecName: Full=Acyl carrier protein;          Short=ACP;...    36   0.49
(B2SNN4) RecName: Full=Acyl carrier protein;          Short=ACP;...    36   0.49
(Q74CR8) RecName: Full=Acyl carrier protein;          Short=ACP;...    36   0.49
AY876376_1(AY876376|pid:none) Listonella anguillarum AcpV (acpV)...    35   0.64
CP000142_1555(CP000142|pid:none) Pelobacter carbinolicus DSM 238...    35   0.64
(A7Z4L2) RecName: Full=Acyl carrier protein;          Short=ACP;...    35   0.64
(Q9EZI1) RecName: Full=Acyl carrier protein;          Short=ACP;...    35   0.64
CP001055_647(CP001055|pid:none) Elusimicrobium minutum Pei191, c...    35   0.64
(B3QRN4) RecName: Full=Acyl carrier protein;          Short=ACP;...    35   0.64
(Q5FJI8) RecName: Full=Acyl carrier protein;          Short=ACP;...    35   0.64
CP000240_1621(CP000240|pid:none) Synechococcus sp. JA-2-3B'a(2-1...    35   0.64
(A5EXE0) RecName: Full=Acyl carrier protein;          Short=ACP;...    35   0.84
(Q8ER06) RecName: Full=Acyl carrier protein;          Short=ACP;...    35   0.84
(Q5P0D3) RecName: Full=Acyl carrier protein;          Short=ACP;...    35   0.84
AE016825_3413(AE016825|pid:none) Chromobacterium violaceum ATCC ...    35   0.84
CR522870_2789(CR522870|pid:none) Desulfotalea psychrophila LSv54...    35   1.1
CP000117_3627(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    35   1.1
(B3QS74) RecName: Full=Acyl carrier protein;          Short=ACP;...    35   1.1
T12021(T12021) acyl carrier protein - Pseudomonas aeruginosa  &U...    35   1.1
AM888199_3(AM888199|pid:none) Streptomyces lydicus fatty acid bi...    34   1.4
(Q482J9) RecName: Full=Acyl carrier protein;          Short=ACP;...    34   1.4
(B5E8U3) RecName: Full=Acyl carrier protein;          Short=ACP;...    34   1.4
CP001154_566(CP001154|pid:none) Laribacter hongkongensis HLHK9, ...    34   1.4
CU928168_654(CU928168|pid:none) Kluyveromyces thermotolerans str...    34   1.9
(A5FKU7) RecName: Full=Acyl carrier protein;          Short=ACP;...    34   1.9
(Q1AW83) RecName: Full=Acyl carrier protein;          Short=ACP;...    34   1.9
(B4RR62) RecName: Full=Acyl carrier protein;          Short=ACP;...    34   1.9
(A3DDY8) RecName: Full=Acyl carrier protein;          Short=ACP;...    34   1.9
(A1KRQ3) RecName: Full=Acyl carrier protein;          Short=ACP;...    34   1.9
CP001634_951(CP001634|pid:none) Kosmotoga olearia TBF 19.5.1, co...    34   1.9
CR382130_990(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...    34   1.9
(P80920) RecName: Full=Acyl carrier protein;          Short=ACP;       34   1.9
AM295250_850(AM295250|pid:none) Staphylococcus carnosus subsp. c...    33   2.4
(A0M6S7) RecName: Full=Acyl carrier protein;          Short=ACP;...    33   2.4
(Q10217) RecName: Full=Putative acyl carrier protein, mitochondr...    33   2.4
CP001037_4117(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    33   2.4
CU466930_241(CU466930|pid:none) Candidatus Cloacamonas acidamino...    33   2.4
(Q8A2E6) RecName: Full=Acyl carrier protein;          Short=ACP;...    33   2.4
CP001638_1000(CP001638|pid:none) Geobacillus sp. WCH70, complete...    33   3.2
AM412317_3608(AM412317|pid:none) Clostridium botulinum A str. AT...    33   3.2
T28835(T28835)hypothetical protein F37C12.3 - Caenorhabditis ele...    33   3.2
CP000700_272(CP000700|pid:none) Sphingomonas wittichii RW1 plasm...    33   3.2
CP000817_1474(CP000817|pid:none) Lysinibacillus sphaericus C3-41...    33   3.2
(A1U1S9) RecName: Full=Acyl carrier protein;          Short=ACP;...    33   3.2
CP000020_1758(CP000020|pid:none) Vibrio fischeri ES114 chromosom...    33   3.2
(Q0SSA1) RecName: Full=Acyl carrier protein;          Short=ACP;...    33   3.2
(Q2G8P0) RecName: Full=Acyl carrier protein;          Short=ACP;...    33   4.2
(Q7VI80) RecName: Full=Acyl carrier protein;          Short=ACP;...    33   4.2
CP001098_1023(CP001098|pid:none) Halothermothrix orenii H 168, c...    33   4.2
CP000885_2416(CP000885|pid:none) Clostridium phytofermentans ISD...    33   4.2
(Q7MLZ9) RecName: Full=Acyl carrier protein;          Short=ACP;...    33   4.2
CP000820_5240(CP000820|pid:none) Frankia sp. EAN1pec, complete g...    33   4.2
(Q85FZ0) RecName: Full=Acyl carrier protein;          Short=ACP;...    33   4.2
CP000713_453(CP000713|pid:none) Psychrobacter sp. PRwf-1, comple...    33   4.2
(Q4L5T4) RecName: Full=Acyl carrier protein;          Short=ACP;...    33   4.2
CP000922_1748(CP000922|pid:none) Anoxybacillus flavithermus WK1,...    32   5.5
CP000927_2934(CP000927|pid:none) Caulobacter sp. K31, complete g...    32   5.5
AM910995_70(AM910995|pid:none) Plasmodium knowlesi strain H chro...    32   5.5
(B2GFZ6) RecName: Full=Acyl carrier protein;          Short=ACP;...    32   5.5
AE017196_1070(AE017196|pid:none) Wolbachia endosymbiont of Droso...    32   5.5
(Q1GWG9) RecName: Full=Acyl carrier protein;          Short=ACP;...    32   5.5
BA000045_2311(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ...    32   5.5
(P20803) RecName: Full=Acyl carrier protein;          Short=ACP;...    32   5.5
AJ279022_1(AJ279022|pid:none) Candida rugosa putative ACP gene f...    32   5.5
CP000828_2402(CP000828|pid:none) Acaryochloris marina MBIC11017,...    32   5.5
FM992689_369(FM992689|pid:none) Candida dubliniensis CD36 chromo...    32   7.1
CP000382_1218(CP000382|pid:none) Clostridium novyi NT, complete ...    32   7.1
A97339(A97339) acyl Carrier Protein, ACP [imported] - Clostridiu...    32   7.1
AY367782_1(AY367782|pid:none) Chlamydomonas reinhardtii acyl car...    32   7.1
(Q31HR4) RecName: Full=Acyl carrier protein;          Short=ACP;...    32   7.1
CP000498_638(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...    32   7.1
(A6KZ78) RecName: Full=Acyl carrier protein;          Short=ACP;...    32   7.1
CP000159_2688(CP000159|pid:none) Salinibacter ruber DSM 13855, c...    32   7.1
CP000806_4113(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    32   7.1
CR931997_659(CR931997|pid:none) Corynebacterium jeikeium K411 co...    32   9.3
CP000103_228(CP000103|pid:none) Nitrosospira multiformis ATCC 25...    32   9.3
AE017283_970(AE017283|pid:none) Propionibacterium acnes KPA17120...    32   9.3

>CP001337_279(CP001337|pid:none) Chloroflexus aggregans DSM 9485,
           complete genome.
          Length = 82

 Score = 44.3 bits (103), Expect = 0.001
 Identities = 19/40 (47%), Positives = 27/40 (67%)
 Frame = +1

Query: 163 LFELYAKIEKEFDIQVPVEDMDKIKTVLNCLNYINYHQEN 282
           L EL   IE+EF +++P ED +KI+TV + L Y+  HQ N
Sbjct: 42  LVELIMSIEEEFGVEIPDEDAEKIQTVADALQYLETHQSN 81

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 325,945,594
Number of extensions: 4766909
Number of successful extensions: 13164
Number of sequences better than 10.0: 177
Number of HSP's gapped: 13160
Number of HSP's successfully gapped: 177
Length of query: 101
Length of database: 1,061,185,681
Length adjustment: 69
Effective length of query: 32
Effective length of database: 835,662,769
Effective search space: 26741208608
Effective search space used: 26741208608
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 28 (15.4 bits)
PSORT 

 psg: 0.30  gvh: 0.44  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U05107-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0