Homology vs CSM-cDNA |
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Homology vs DNA |
Query= Contig-U05106-1 (Contig-U05106-1Q) /CSM_Contig/Contig-U05106-1Q.Seq.d (436 letters)
Database: ddbj_B 105,743,758 sequences; 104,622,809,269 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(C92785) Dictyostelium discoideum slug cDNA, clone SSF342. 664 0.0 1 (BJ412287) Dictyostelium discoideum cDNA clone:ddv7p17, 5' e... 246 e-111 2 (BJ430561) Dictyostelium discoideum cDNA clone:ddv7p17, 3' e... 246 2e-79 4 (BH525323) BOHQK06TF BOHQ Brassica oleracea genomic clone BO... 54 0.005 1 (BH135566) ENTMZ43TF Entamoeba histolytica Sheared DNA Entam... 36 0.13 2 (AZ689026) ENTIF41TF Entamoeba histolytica Sheared DNA Entam... 36 0.13 2 (CR847858) Zebrafish DNA sequence from clone DKEY-78H3 in li... 36 0.22 7 (BX908755) Zebrafish DNA sequence from clone DKEY-67F11 in l... 34 0.28 6 (BX088720) Zebrafish DNA sequence from clone CH211-195M2 in ... 40 0.44 5 (EJ341255) 1092963517516 Global-Ocean-Sampling_GS-28-01-01-1... 36 0.51 2 (AC016397) Homo sapiens chromosome 10 clone RP11-541M12, com... 34 0.61 2 (FP016116) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.61 2 (GC698505) Sequence 13750 from patent US 6812339. 34 0.63 2 (AX344959) Sequence 30 from Patent WO0200928. 32 0.63 4 (AL137667) Homo sapiens mRNA; cDNA DKFZp434B231 (from clone ... 34 0.75 2 (DC207875) Plasmodium berghei strain ANKA cDNA clone:MG00803... 28 0.76 4 (AW606197) PM0-HT0339-260100-006-F07 HT0339 Homo sapiens cDN... 34 0.81 2 (AW382844) PM0-HT0339-301199-004-d02 HT0339 Homo sapiens cDN... 34 0.81 2 (AW382793) PM0-HT0339-241199-002-H10 HT0339 Homo sapiens cDN... 34 0.82 2 (AA830832) oc54b01.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone ... 34 0.82 2 (AF399011) Pseudomonas phage phiKZ, complete genome. 40 0.82 6 (AW005952) wz80f07.x1 NCI_CGAP_Gas4 Homo sapiens cDNA clone ... 34 0.82 2 (AW382811) PM0-HT0339-251199-003-g02 HT0339 Homo sapiens cDN... 34 0.83 2 (FI237908) CccaBb014-E5JR CccABb Cajanus cajan genomic clone... 30 1.1 3 (FI266759) CccaBb064-K7JR CccABb Cajanus cajan genomic clone... 30 1.1 3 (CS416754) Sequence 7 from Patent WO2006094943. 46 1.1 1 (AE014297) Drosophila melanogaster chromosome 3R, complete s... 46 1.1 1 (AC008360) Drosophila melanogaster, chromosome 3R, region 87... 46 1.1 1 (AC007723) Drosophila melanogaster, chromosome 3R, region 87... 46 1.1 1 (AC204791) Chlorocebus aethiops clone CH252-68D5, WORKING DR... 46 1.1 1 (AC012997) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 46 1.1 1 (FI470471) CH322-54C16.y CHORI-322 Drosophila melanogaster g... 46 1.1 1 (EK342623) 1095467068093 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.1 1 (DE379894) Bombyx mori genomic DNA, BAC clone:2D5F. 46 1.1 1 (BH972637) odh12g06.g1 B.oleracea002 Brassica oleracea genom... 46 1.1 1 (AJ850916) Ferroplasma acidiphilum gly1 gene for alpha-D-glu... 46 1.1 1 (AC169481) Sorex araneus clone SA_Ba-502A1, WORKING DRAFT SE... 34 1.7 3 (AL954851) Zebrafish DNA sequence from clone CH211-280J3. 36 2.0 4 (CS790018) Sequence 1274 from Patent WO2005031001. 32 2.2 2 (AC099707) Mus musculus chromosome 1, clone RP23-329C7, comp... 32 2.2 2 (AC123542) Lemur catta clone LB2-136L13, complete sequence. 34 2.3 2 (AC211071) Solanum lycopersicum chromosome 6 clone C06HBa030... 34 2.3 2 (AM446241) Vitis vinifera contig VV78X188216.9, whole genome... 40 2.5 2 (AL163763) Arabidopsis thaliana DNA chromosome 3, BAC clone ... 44 2.5 2 (BX571719) Zebrafish DNA sequence from clone DKEY-183C2 in l... 36 2.5 5 (CU861938) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 2.8 3 (AC188686) Pan troglodytes BAC clone CH251-653M2 from chromo... 30 2.8 6 (CE239540) tigr-gss-dog-17000333418334 Dog Library Canis lup... 34 3.0 2 (AL627263) Zebrafish DNA sequence from clone RP71-1L9 in lin... 34 3.1 7 (DH319125) Oryzias latipes Fosmid clone:GOLWFno608_b21, reve... 32 3.1 2 (AC169515) Medicago truncatula chromosome 7 BAC clone mth2-6... 38 3.7 4 (AC133211) Mus musculus BAC clone RP23-36M18 from chromosome... 44 3.7 3 (AC094915) Rattus norvegicus clone CH230-6C23, WORKING DRAFT... 38 3.8 4 (DY255988) Mdfrb3143G22.g1 Apple_EST_Mdfrb Malus x domestica... 38 4.2 2 (CR388099) Zebrafish DNA sequence from clone DKEY-111F13 in ... 44 4.5 1 (BV417874) S229P650FA5.T0 GermanShepherd Canis familiaris ST... 44 4.5 1 (AC129555) Mus musculus chromosome 5, clone RP24-90F19, comp... 44 4.5 1 (AC114140) Rattus norvegicus BAC CH230-139F7 () complete se... 44 4.5 1 (CU861905) M.truncatula DNA sequence from clone MTE1-19E18 o... 44 4.5 1 (AM456111) Vitis vinifera contig VV78X086962.2, whole genome... 44 4.5 1 (AM450551) Vitis vinifera contig VV78X048228.5, whole genome... 44 4.5 1 (AM435632) Vitis vinifera contig VV78X261792.2, whole genome... 44 4.5 1 (AC215470) Solanum lycopersicum chromosome 2 clone C02SLm000... 44 4.5 1 (FB715611) Sequence 236 from Patent WO2007140011. 44 4.5 1 (AF038204) Homo sapiens clone 23849 mRNA sequence. 44 4.5 1 (AC009242) Homo sapiens BAC clone RP11-557N21 from chromosom... 44 4.5 1 (AB033066) Homo sapiens mRNA for KIAA1240 protein, partial cds. 44 4.5 1 (AC132634) Rattus norvegicus clone CH230-58H18, WORKING DRAF... 44 4.5 1 (AC112104) Rattus norvegicus clone CH230-298F6, *** SEQUENCI... 44 4.5 1 (AC112048) Rattus norvegicus clone CH230-27O21, *** SEQUENCI... 44 4.5 1 (AC107414) Rattus norvegicus clone CH230-28F13, WORKING DRAF... 44 4.5 1 (FP102541) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.5 1 (CU928427) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.5 1 (AC223822) Bos taurus clone CH240-457F7, WORKING DRAFT SEQUE... 44 4.5 1 (AC182843) Bos taurus clone CH240-300M3, WORKING DRAFT SEQUE... 44 4.5 1 (AQ959792) LEREN05TF LERE Arabidopsis thaliana genomic clone... 44 4.5 1 (FH655948) CHO_OF4404xg18f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 4.5 1 (FH416255) CHO_OF4876xj09f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 4.5 1 (ER592642) 1093016205865 Global-Ocean-Sampling_GS-36-01-01-2... 44 4.5 1 (ER341083) 1092344347147 Global-Ocean-Sampling_GS-34-01-01-1... 44 4.5 1 (AM620180) Entamoeba invadens IP1 GSS, clone inv126d11.p1k. 44 4.5 1 (EJ100205) 1095467028565 Global-Ocean-Sampling_GS-26-01-01-1... 44 4.5 1 (EJ099403) 1095462396978 Global-Ocean-Sampling_GS-26-01-01-1... 44 4.5 1 (EJ098260) 1095462300813 Global-Ocean-Sampling_GS-26-01-01-1... 44 4.5 1 (EJ091763) 1095460194994 Global-Ocean-Sampling_GS-26-01-01-1... 44 4.5 1 (EJ077539) 1095458134632 Global-Ocean-Sampling_GS-26-01-01-1... 44 4.5 1 (EJ065265) 1095458034606 Global-Ocean-Sampling_GS-26-01-01-1... 44 4.5 1 (EI372227) POTCB67TF Solanum tuberosum RHPOTKEY BAC ends Sol... 44 4.5 1 (DX260262) OR_ABa0152A07.r OR_ABa Oryza ridleyi genomic clon... 44 4.5 1 (AL324824) Tetraodon nigroviridis genome survey sequence SP6... 44 4.5 1 (AL237457) Tetraodon nigroviridis genome survey sequence T7 ... 44 4.5 1 (AL075013) Drosophila melanogaster genome survey sequence TE... 44 4.5 1 (DE407848) Bombyx mori genomic DNA, BAC clone:8E5B. 44 4.5 1 (CL502973) SAIL_718_D12.v1 SAIL Collection Arabidopsis thali... 44 4.5 1 (CL463143) SAIL_1178_B10.v1 SAIL Collection Arabidopsis thal... 44 4.5 1 (CE314231) tigr-gss-dog-17000360972233 Dog Library Canis lup... 44 4.5 1 (BZ081506) llb97f12.b1 B.oleracea002 Brassica oleracea genom... 44 4.5 1 (BH934917) odg48h03.b1 B.oleracea002 Brassica oleracea genom... 44 4.5 1 (BH932751) odf07g12.g1 B.oleracea002 Brassica oleracea genom... 44 4.5 1 (BH572490) BOGGM02TF BOGG Brassica oleracea genomic clone BO... 44 4.5 1 (AV745166) Homo sapiens cDNA clone:NP1F11, 5'end, expressed ... 44 4.5 1 (AU299812) Cryptomeria japonica mRNA, clone: CF0583, 5' end,... 44 4.5 1 (DT028595) VVL024H08_678816 CabSau Berry Postveraison Mixed ... 44 4.5 1 (DT027761) VVL015B11_677148 CabSau Berry Postveraison Mixed ... 44 4.5 1 (DN736868) CNB89-E08.y1d-s SHGC-CNB Gasterosteus aculeatus c... 44 4.5 1 (DB253221) Homo sapiens cDNA clone UTERU2007736, 5' end, mRN... 44 4.5 1 (DB100984) Homo sapiens cDNA clone THYMU1000219, 5' end, mRN... 44 4.5 1 (DA732612) Homo sapiens cDNA clone NT2RP2001073, 5' end, mRN... 44 4.5 1 (DA020938) Homo sapiens cDNA clone ASTRO2002449, 5' end, mRN... 44 4.5 1 (BP175035) Cryptomeria japonica mRNA, clone: CC2343R, 3'end,... 44 4.5 1 (BM718545) UI-E-EO1-ajb-b-18-0-UI.r1 UI-E-EO1 Homo sapiens c... 44 4.5 1 (BJ936900) Cryptomeria japonica pollen cDNA, clone:CP10177, ... 44 4.5 1 (GH429790) G874P57FH1.T0 C. posadasii Silveira, 72HR SPHERUL... 44 4.5 1 (GD175454) EST01663 Watermelon fruit normalization and subtr... 44 4.5 1 (DQ366726) Uncultured Prochlorococcus marinus clone HF10-88F... 44 4.5 1 (CP000825) Prochlorococcus marinus str. MIT 9215, complete g... 44 4.5 1 (CP000576) Prochlorococcus marinus str. MIT 9301, complete g... 44 4.5 1 (CR847790) Zebrafish DNA sequence from clone DKEY-242N8 in l... 34 4.6 4 (BF253169) EST445664 Coccidioides posadasii spherule cDNA li... 34 4.8 2 (DU930727) 353039 Tomato EcoRI BAC Library Solanum lycopersi... 30 5.6 3 (CF819835) EST697217 Coccidioides posadasii saprobic phase c... 34 6.3 2 (CF826674) EST704056 Coccidioides posadasii saprobic phase c... 34 6.4 2 (CF822654) EST700036 Coccidioides posadasii saprobic phase c... 34 6.4 2 (CF824092) EST701474 Coccidioides posadasii saprobic phase c... 34 6.5 2 (AP001768) Homo sapiens genomic DNA, chromosome 11q14 clone:... 34 6.5 6 (CP000348) Leptospira borgpetersenii serovar Hardjo-bovis L5... 32 6.5 2 (CP000350) Leptospira borgpetersenii serovar Hardjo-bovis JB... 32 6.5 2 (AE014187) Plasmodium falciparum 3D7 chromosome 14, complete... 32 6.6 2 (CR762436) Zebrafish DNA sequence from clone DKEY-261M9. 36 6.6 4 (AC212648) Solanum lycopersicum chromosome 7 clone C07SLe012... 40 6.7 3 (BX510920) Zebrafish DNA sequence from clone DKEY-30J22 in l... 36 6.8 5 (EJ535449) 1092955256784 Global-Ocean-Sampling_GS-29-01-01-1... 38 6.8 2 (EC282862) BRAINF089541K8 POSSUM_01-POSSUM-C-BRAIN-2KB Trich... 40 6.8 2 (EK514713) 1095515493208 Global-Ocean-Sampling_GS-32-01-01-1... 40 6.9 2 (CO030282) EST808666 Coccidioides posadasii spherule cDNA li... 34 7.0 2 (GM883754) Sequence 98 from Patent WO2008137090. 38 7.5 3 (GC701944) Sequence 17189 from patent US 6812339. 32 8.0 2 (AC169728) Bos taurus clone CH240-196C13, WORKING DRAFT SEQU... 32 8.0 2 (AC010255) Homo sapiens chromosome 5 clone CTC-441N14, compl... 32 8.0 2 (AF168787) Homo sapiens vanilloid receptor gene, partial seq... 30 8.1 2 (AC224611) Bos taurus clone CH240-480I7, WORKING DRAFT SEQUE... 32 8.1 2 (AC078809) Homo sapiens 3 BAC RP11-600G3 (Roswell Park Cance... 32 8.2 2 (AC027040) Homo sapiens chromosome 17 clone RP11-601L9 map 1... 30 8.2 2 (AC126357) Homo sapiens chromosome 17 clone CTD-2560C17 map ... 30 8.2 2 (AC213968) Sorex araneus clone SA_Ba-527P10, WORKING DRAFT S... 30 8.3 2 (AC209506) Sorex araneus clone SA_Ba-403I10, WORKING DRAFT S... 30 8.3 2 (AC027796) Homo sapiens chromosome 17, clone RP11-235E17, co... 30 8.3 2 (DX520911) GH_MBb0054N16f GH_MBb Gossypium hirsutum genomic ... 34 8.4 3 (AC117476) Homo sapiens 3 BAC RP11-726H11 (Roswell Park Canc... 42 8.5 2 (AC090062) Homo sapiens chromosome 5 clone CTB-160P13, WORKI... 32 8.5 2 (AC215453) Solanum lycopersicum chromosome 2 clone C02SLe003... 36 8.5 5 (AC132942) Homo sapiens chromosome 17, clone RP11-48B14, com... 30 8.6 2 (AL157773) Human DNA sequence from clone RP11-345L23 on chro... 32 8.8 2 (AC097469) Homo sapiens BAC clone RP11-55N4 from 4, complete... 38 8.8 3 (FB669616) Sequence 261 from Patent WO2007144105. 30 9.1 2 (GC700634) Sequence 15879 from patent US 6812339. 30 9.1 2 (GC697192) Sequence 12437 from patent US 6812339. 30 9.1 2 (AL954663) Zebrafish DNA sequence from clone DKEY-47L19 in l... 34 9.6 6
>(C92785) Dictyostelium discoideum slug cDNA, clone SSF342. Length = 437
Score = 664 bits (335), Expect = 0.0 Identities = 335/335 (100%) Strand = Plus / Plus
Query: 1 cattattattatcagtcagacgaaaaaacacaattaattgaagctttttacaatttcgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cattattattatcagtcagacgaaaaaacacaattaattgaagctttttacaatttcgat 60
Query: 61 ggagactatgatggttttgttagtgtagaagaatttagaggaattattagagatggttta 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ggagactatgatggttttgttagtgtagaagaatttagaggaattattagagatggttta 120
Query: 121 ccaatgactgaagctgaggtatgttatttttaaacaaaaagaaaattgtatataatataa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ccaatgactgaagctgaggtatgttatttttaaacaaaaagaaaattgtatataatataa 180
Query: 181 agttaaattaccacattttatttttatactcactctcaaccttcattttaaataattaca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 agttaaattaccacattttatttttatactcactctcaaccttcattttaaataattaca 240
Query: 241 gatcacagaattctttgaagcagctgatccaaataatacaggttttattgattataaagc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 gatcacagaattctttgaagcagctgatccaaataatacaggttttattgattataaagc 300
Query: 301 attcgctgcaatgttatattcagttgatgaatcat 335 ||||||||||||||||||||||||||||||||||| Sbjct: 301 attcgctgcaatgttatattcagttgatgaatcat 335
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 105743758 Number of Hits to DB: 583,045,052 Number of extensions: 46269507 Number of successful extensions: 3798826 Number of sequences better than 10.0: 158 Length of query: 436 Length of database: 104,622,809,269 Length adjustment: 23 Effective length of query: 413 Effective length of database: 102,190,702,835 Effective search space: 42204760270855 Effective search space used: 42204760270855 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
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Homology vs Protein |
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