Contig-U05106-1
Contig ID Contig-U05106-1
Contig update 2001. 8.29
Contig sequence
>Contig-U05106-1 (Contig-U05106-1Q) /CSM_Contig/Contig-U05106-1Q.Seq.d
CATTATTATTATCAGTCAGACGAAAAAACACAATTAATTGAAGCTTTTTA
CAATTTCGATGGAGACTATGATGGTTTTGTTAGTGTAGAAGAATTTAGAG
GAATTATTAGAGATGGTTTACCAATGACTGAAGCTGAGGTATGTTATTTT
TAAACAAAAAGAAAATTGTATATAATATAAAGTTAAATTACCACATTTTA
TTTTTATACTCACTCTCAACCTTCATTTTAAATAATTACAGATCACAGAA
TTCTTTGAAGCAGCTGATCCAAATAATACAGGTTTTATTGATTATAAAGC
ATTCGCTGCAATGTTATATTCAGTTGATGAATCATAAAAAAGAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAACTTCAAGACAAACTAAA
TCAAAAAGACAATACCAAAAAAAAAAAAAAAAAAAA

Gap no gap
Contig length 436
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3584662
End point 3585098
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05106
List of clone(s)

est1=SSF342E,1,437
Translated Amino Acid sequence
lllsvrrkntin*sflqfrwrl*wfc*crri*rny*rwftnd*s*GMLFLNKKKIVYNIK
LNYHILFLYSLSTFILNNYRSQNSLKQLIQIIQVLLIIKHSLQCYIQLMNHKKEKKKKKK
KKKKKKKLQDKLNQKDNTKKKKKK


Translated Amino Acid sequence (All Frames)
Frame A:
hyyyqsdektqlieafynfdgdydgfvsveefrgiirdglpmteaevcyf*tkrklyii*
s*ittfyfythsqpsf*iitdhril*ss*sk*yrfy*l*sircnvifs**iikkkkkkkk
kkkkkrknfktn*ikktipkkkkkk


Frame B:
iiiisqtkkhn*lklftismetmmvllv*knleellemvyq*lklryvifkqkenci*yk
vklphfifiltlnlhfk*lqiteffeaadpnntgfidykafaamlysvdes*krkkkkkk
kkkkkektsrqtkskrqyqkkkkkk


Frame C:
lllsvrrkntin*sflqfrwrl*wfc*crri*rny*rwftnd*s*GMLFLNKKKIVYNIK
LNYHILFLYSLSTFILNNYRSQNSLKQLIQIIQVLLIIKHSLQCYIQLMNHKKEKKKKKK
KKKKKKKLQDKLNQKDNTKKKKKK


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05106-1 (Contig-U05106-1Q)
/CSM_Contig/Contig-U05106-1Q.Seq.d
(436 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05106-1 (Contig-U05106-1Q) /CSM_Contig/Conti... 664 0.0
Contig-U06073-1 (Contig-U06073-1Q) /CSM_Contig/Conti... 246 2e-65
Contig-U04713-1 (Contig-U04713-1Q) /CSM_Contig/Conti... 38 0.008
Contig-U12615-1 (Contig-U12615-1Q) /CSM_Contig/Conti... 36 0.030
Contig-U11548-1 (Contig-U11548-1Q) /CSM_Contig/Conti... 36 0.030
Contig-U10340-1 (Contig-U10340-1Q) /CSM_Contig/Conti... 36 0.030
Contig-U11778-1 (Contig-U11778-1Q) /CSM_Contig/Conti... 34 0.12
Contig-U11129-1 (Contig-U11129-1Q) /CSM_Contig/Conti... 34 0.12
Contig-U11110-1 (Contig-U11110-1Q) /CSM_Contig/Conti... 34 0.12
Contig-U13990-1 (Contig-U13990-1Q) /CSM_Contig/Conti... 32 0.47

>Contig-U05106-1 (Contig-U05106-1Q) /CSM_Contig/Contig-U05106-1Q.Seq.d
Length = 436

Score = 664 bits (335), Expect = 0.0
Identities = 335/335 (100%)
Strand = Plus / Plus


Query: 1 cattattattatcagtcagacgaaaaaacacaattaattgaagctttttacaatttcgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cattattattatcagtcagacgaaaaaacacaattaattgaagctttttacaatttcgat 60


Query: 61 ggagactatgatggttttgttagtgtagaagaatttagaggaattattagagatggttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggagactatgatggttttgttagtgtagaagaatttagaggaattattagagatggttta 120


Query: 121 ccaatgactgaagctgaggtatgttatttttaaacaaaaagaaaattgtatataatataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccaatgactgaagctgaggtatgttatttttaaacaaaaagaaaattgtatataatataa 180


Query: 181 agttaaattaccacattttatttttatactcactctcaaccttcattttaaataattaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agttaaattaccacattttatttttatactcactctcaaccttcattttaaataattaca 240


Query: 241 gatcacagaattctttgaagcagctgatccaaataatacaggttttattgattataaagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gatcacagaattctttgaagcagctgatccaaataatacaggttttattgattataaagc 300


Query: 301 attcgctgcaatgttatattcagttgatgaatcat 335
|||||||||||||||||||||||||||||||||||
Sbjct: 301 attcgctgcaatgttatattcagttgatgaatcat 335


Score = 65.9 bits (33), Expect = 3e-11
Identities = 33/33 (100%)
Strand = Plus / Plus


Query: 384 cttcaagacaaactaaatcaaaaagacaatacc 416
|||||||||||||||||||||||||||||||||
Sbjct: 384 cttcaagacaaactaaatcaaaaagacaatacc 416


>Contig-U06073-1 (Contig-U06073-1Q) /CSM_Contig/Contig-U06073-1Q.Seq.d
Length = 275

Score = 246 bits (124), Expect = 2e-65
Identities = 124/124 (100%)
Strand = Plus / Plus


Query: 15 gtcagacgaaaaaacacaattaattgaagctttttacaatttcgatggagactatgatgg 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42 gtcagacgaaaaaacacaattaattgaagctttttacaatttcgatggagactatgatgg 101


Query: 75 ttttgttagtgtagaagaatttagaggaattattagagatggtttaccaatgactgaagc 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 ttttgttagtgtagaagaatttagaggaattattagagatggtttaccaatgactgaagc 161


Query: 135 tgag 138
||||
Sbjct: 162 tgag 165


Score = 190 bits (96), Expect = 9e-49
Identities = 96/96 (100%)
Strand = Plus / Plus


Query: 240 agatcacagaattctttgaagcagctgatccaaataatacaggttttattgattataaag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 agatcacagaattctttgaagcagctgatccaaataatacaggttttattgattataaag 223


Query: 300 cattcgctgcaatgttatattcagttgatgaatcat 335
||||||||||||||||||||||||||||||||||||
Sbjct: 224 cattcgctgcaatgttatattcagttgatgaatcat 259


>Contig-U04713-1 (Contig-U04713-1Q) /CSM_Contig/Contig-U04713-1Q.Seq.d
Length = 645

Score = 38.2 bits (19), Expect = 0.008
Identities = 19/19 (100%)
Strand = Plus / Minus


Query: 149 tttaaacaaaaagaaaatt 167
|||||||||||||||||||
Sbjct: 37 tttaaacaaaaagaaaatt 19


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,327
Number of Sequences: 6905
Number of extensions: 19327
Number of successful extensions: 1249
Number of sequences better than 10.0: 284
length of query: 436
length of database: 5,674,871
effective HSP length: 16
effective length of query: 420
effective length of database: 5,564,391
effective search space: 2337044220
effective search space used: 2337044220
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7.12
Homology vs DNA
Query= Contig-U05106-1 (Contig-U05106-1Q) /CSM_Contig/Contig-U05106-1Q.Seq.d
(436 letters)

Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C92785) Dictyostelium discoideum slug cDNA, clone SSF342. 664 0.0 1
(BJ412287) Dictyostelium discoideum cDNA clone:ddv7p17, 5' e... 246 e-111 2
(BJ430561) Dictyostelium discoideum cDNA clone:ddv7p17, 3' e... 246 2e-79 4
(BH525323) BOHQK06TF BOHQ Brassica oleracea genomic clone BO... 54 0.005 1
(BH135566) ENTMZ43TF Entamoeba histolytica Sheared DNA Entam... 36 0.13 2
(AZ689026) ENTIF41TF Entamoeba histolytica Sheared DNA Entam... 36 0.13 2
(CR847858) Zebrafish DNA sequence from clone DKEY-78H3 in li... 36 0.22 7
(BX908755) Zebrafish DNA sequence from clone DKEY-67F11 in l... 34 0.28 6
(BX088720) Zebrafish DNA sequence from clone CH211-195M2 in ... 40 0.44 5
(EJ341255) 1092963517516 Global-Ocean-Sampling_GS-28-01-01-1... 36 0.51 2
(AC016397) Homo sapiens chromosome 10 clone RP11-541M12, com... 34 0.61 2
(FP016116) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.61 2
(GC698505) Sequence 13750 from patent US 6812339. 34 0.63 2
(AX344959) Sequence 30 from Patent WO0200928. 32 0.63 4
(AL137667) Homo sapiens mRNA; cDNA DKFZp434B231 (from clone ... 34 0.75 2
(DC207875) Plasmodium berghei strain ANKA cDNA clone:MG00803... 28 0.76 4
(AW606197) PM0-HT0339-260100-006-F07 HT0339 Homo sapiens cDN... 34 0.81 2
(AW382844) PM0-HT0339-301199-004-d02 HT0339 Homo sapiens cDN... 34 0.81 2
(AW382793) PM0-HT0339-241199-002-H10 HT0339 Homo sapiens cDN... 34 0.82 2
(AA830832) oc54b01.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone ... 34 0.82 2
(AF399011) Pseudomonas phage phiKZ, complete genome. 40 0.82 6
(AW005952) wz80f07.x1 NCI_CGAP_Gas4 Homo sapiens cDNA clone ... 34 0.82 2
(AW382811) PM0-HT0339-251199-003-g02 HT0339 Homo sapiens cDN... 34 0.83 2
(FI237908) CccaBb014-E5JR CccABb Cajanus cajan genomic clone... 30 1.1 3
(FI266759) CccaBb064-K7JR CccABb Cajanus cajan genomic clone... 30 1.1 3
(CS416754) Sequence 7 from Patent WO2006094943. 46 1.1 1
(AE014297) Drosophila melanogaster chromosome 3R, complete s... 46 1.1 1
(AC008360) Drosophila melanogaster, chromosome 3R, region 87... 46 1.1 1
(AC007723) Drosophila melanogaster, chromosome 3R, region 87... 46 1.1 1
(AC204791) Chlorocebus aethiops clone CH252-68D5, WORKING DR... 46 1.1 1
(AC012997) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 46 1.1 1
(FI470471) CH322-54C16.y CHORI-322 Drosophila melanogaster g... 46 1.1 1
(EK342623) 1095467068093 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.1 1
(DE379894) Bombyx mori genomic DNA, BAC clone:2D5F. 46 1.1 1
(BH972637) odh12g06.g1 B.oleracea002 Brassica oleracea genom... 46 1.1 1
(AJ850916) Ferroplasma acidiphilum gly1 gene for alpha-D-glu... 46 1.1 1
(AC169481) Sorex araneus clone SA_Ba-502A1, WORKING DRAFT SE... 34 1.7 3
(AL954851) Zebrafish DNA sequence from clone CH211-280J3. 36 2.0 4
(CS790018) Sequence 1274 from Patent WO2005031001. 32 2.2 2
(AC099707) Mus musculus chromosome 1, clone RP23-329C7, comp... 32 2.2 2
(AC123542) Lemur catta clone LB2-136L13, complete sequence. 34 2.3 2
(AC211071) Solanum lycopersicum chromosome 6 clone C06HBa030... 34 2.3 2
(AM446241) Vitis vinifera contig VV78X188216.9, whole genome... 40 2.5 2
(AL163763) Arabidopsis thaliana DNA chromosome 3, BAC clone ... 44 2.5 2
(BX571719) Zebrafish DNA sequence from clone DKEY-183C2 in l... 36 2.5 5
(CU861938) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 2.8 3
(AC188686) Pan troglodytes BAC clone CH251-653M2 from chromo... 30 2.8 6
(CE239540) tigr-gss-dog-17000333418334 Dog Library Canis lup... 34 3.0 2
(AL627263) Zebrafish DNA sequence from clone RP71-1L9 in lin... 34 3.1 7
(DH319125) Oryzias latipes Fosmid clone:GOLWFno608_b21, reve... 32 3.1 2
(AC169515) Medicago truncatula chromosome 7 BAC clone mth2-6... 38 3.7 4
(AC133211) Mus musculus BAC clone RP23-36M18 from chromosome... 44 3.7 3
(AC094915) Rattus norvegicus clone CH230-6C23, WORKING DRAFT... 38 3.8 4
(DY255988) Mdfrb3143G22.g1 Apple_EST_Mdfrb Malus x domestica... 38 4.2 2
(CR388099) Zebrafish DNA sequence from clone DKEY-111F13 in ... 44 4.5 1
(BV417874) S229P650FA5.T0 GermanShepherd Canis familiaris ST... 44 4.5 1
(AC129555) Mus musculus chromosome 5, clone RP24-90F19, comp... 44 4.5 1
(AC114140) Rattus norvegicus BAC CH230-139F7 () complete se... 44 4.5 1
(CU861905) M.truncatula DNA sequence from clone MTE1-19E18 o... 44 4.5 1
(AM456111) Vitis vinifera contig VV78X086962.2, whole genome... 44 4.5 1
(AM450551) Vitis vinifera contig VV78X048228.5, whole genome... 44 4.5 1
(AM435632) Vitis vinifera contig VV78X261792.2, whole genome... 44 4.5 1
(AC215470) Solanum lycopersicum chromosome 2 clone C02SLm000... 44 4.5 1
(FB715611) Sequence 236 from Patent WO2007140011. 44 4.5 1
(AF038204) Homo sapiens clone 23849 mRNA sequence. 44 4.5 1
(AC009242) Homo sapiens BAC clone RP11-557N21 from chromosom... 44 4.5 1
(AB033066) Homo sapiens mRNA for KIAA1240 protein, partial cds. 44 4.5 1
(AC132634) Rattus norvegicus clone CH230-58H18, WORKING DRAF... 44 4.5 1
(AC112104) Rattus norvegicus clone CH230-298F6, *** SEQUENCI... 44 4.5 1
(AC112048) Rattus norvegicus clone CH230-27O21, *** SEQUENCI... 44 4.5 1
(AC107414) Rattus norvegicus clone CH230-28F13, WORKING DRAF... 44 4.5 1
(FP102541) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.5 1
(CU928427) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.5 1
(AC223822) Bos taurus clone CH240-457F7, WORKING DRAFT SEQUE... 44 4.5 1
(AC182843) Bos taurus clone CH240-300M3, WORKING DRAFT SEQUE... 44 4.5 1
(AQ959792) LEREN05TF LERE Arabidopsis thaliana genomic clone... 44 4.5 1
(FH655948) CHO_OF4404xg18f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 4.5 1
(FH416255) CHO_OF4876xj09f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 4.5 1
(ER592642) 1093016205865 Global-Ocean-Sampling_GS-36-01-01-2... 44 4.5 1
(ER341083) 1092344347147 Global-Ocean-Sampling_GS-34-01-01-1... 44 4.5 1
(AM620180) Entamoeba invadens IP1 GSS, clone inv126d11.p1k. 44 4.5 1
(EJ100205) 1095467028565 Global-Ocean-Sampling_GS-26-01-01-1... 44 4.5 1
(EJ099403) 1095462396978 Global-Ocean-Sampling_GS-26-01-01-1... 44 4.5 1
(EJ098260) 1095462300813 Global-Ocean-Sampling_GS-26-01-01-1... 44 4.5 1
(EJ091763) 1095460194994 Global-Ocean-Sampling_GS-26-01-01-1... 44 4.5 1
(EJ077539) 1095458134632 Global-Ocean-Sampling_GS-26-01-01-1... 44 4.5 1
(EJ065265) 1095458034606 Global-Ocean-Sampling_GS-26-01-01-1... 44 4.5 1
(EI372227) POTCB67TF Solanum tuberosum RHPOTKEY BAC ends Sol... 44 4.5 1
(DX260262) OR_ABa0152A07.r OR_ABa Oryza ridleyi genomic clon... 44 4.5 1
(AL324824) Tetraodon nigroviridis genome survey sequence SP6... 44 4.5 1
(AL237457) Tetraodon nigroviridis genome survey sequence T7 ... 44 4.5 1
(AL075013) Drosophila melanogaster genome survey sequence TE... 44 4.5 1
(DE407848) Bombyx mori genomic DNA, BAC clone:8E5B. 44 4.5 1
(CL502973) SAIL_718_D12.v1 SAIL Collection Arabidopsis thali... 44 4.5 1
(CL463143) SAIL_1178_B10.v1 SAIL Collection Arabidopsis thal... 44 4.5 1
(CE314231) tigr-gss-dog-17000360972233 Dog Library Canis lup... 44 4.5 1
(BZ081506) llb97f12.b1 B.oleracea002 Brassica oleracea genom... 44 4.5 1
(BH934917) odg48h03.b1 B.oleracea002 Brassica oleracea genom... 44 4.5 1
(BH932751) odf07g12.g1 B.oleracea002 Brassica oleracea genom... 44 4.5 1
(BH572490) BOGGM02TF BOGG Brassica oleracea genomic clone BO... 44 4.5 1
(AV745166) Homo sapiens cDNA clone:NP1F11, 5'end, expressed ... 44 4.5 1
(AU299812) Cryptomeria japonica mRNA, clone: CF0583, 5' end,... 44 4.5 1
(DT028595) VVL024H08_678816 CabSau Berry Postveraison Mixed ... 44 4.5 1
(DT027761) VVL015B11_677148 CabSau Berry Postveraison Mixed ... 44 4.5 1
(DN736868) CNB89-E08.y1d-s SHGC-CNB Gasterosteus aculeatus c... 44 4.5 1
(DB253221) Homo sapiens cDNA clone UTERU2007736, 5' end, mRN... 44 4.5 1
(DB100984) Homo sapiens cDNA clone THYMU1000219, 5' end, mRN... 44 4.5 1
(DA732612) Homo sapiens cDNA clone NT2RP2001073, 5' end, mRN... 44 4.5 1
(DA020938) Homo sapiens cDNA clone ASTRO2002449, 5' end, mRN... 44 4.5 1
(BP175035) Cryptomeria japonica mRNA, clone: CC2343R, 3'end,... 44 4.5 1
(BM718545) UI-E-EO1-ajb-b-18-0-UI.r1 UI-E-EO1 Homo sapiens c... 44 4.5 1
(BJ936900) Cryptomeria japonica pollen cDNA, clone:CP10177, ... 44 4.5 1
(GH429790) G874P57FH1.T0 C. posadasii Silveira, 72HR SPHERUL... 44 4.5 1
(GD175454) EST01663 Watermelon fruit normalization and subtr... 44 4.5 1
(DQ366726) Uncultured Prochlorococcus marinus clone HF10-88F... 44 4.5 1
(CP000825) Prochlorococcus marinus str. MIT 9215, complete g... 44 4.5 1
(CP000576) Prochlorococcus marinus str. MIT 9301, complete g... 44 4.5 1
(CR847790) Zebrafish DNA sequence from clone DKEY-242N8 in l... 34 4.6 4
(BF253169) EST445664 Coccidioides posadasii spherule cDNA li... 34 4.8 2
(DU930727) 353039 Tomato EcoRI BAC Library Solanum lycopersi... 30 5.6 3
(CF819835) EST697217 Coccidioides posadasii saprobic phase c... 34 6.3 2
(CF826674) EST704056 Coccidioides posadasii saprobic phase c... 34 6.4 2
(CF822654) EST700036 Coccidioides posadasii saprobic phase c... 34 6.4 2
(CF824092) EST701474 Coccidioides posadasii saprobic phase c... 34 6.5 2
(AP001768) Homo sapiens genomic DNA, chromosome 11q14 clone:... 34 6.5 6
(CP000348) Leptospira borgpetersenii serovar Hardjo-bovis L5... 32 6.5 2
(CP000350) Leptospira borgpetersenii serovar Hardjo-bovis JB... 32 6.5 2
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete... 32 6.6 2
(CR762436) Zebrafish DNA sequence from clone DKEY-261M9. 36 6.6 4
(AC212648) Solanum lycopersicum chromosome 7 clone C07SLe012... 40 6.7 3
(BX510920) Zebrafish DNA sequence from clone DKEY-30J22 in l... 36 6.8 5
(EJ535449) 1092955256784 Global-Ocean-Sampling_GS-29-01-01-1... 38 6.8 2
(EC282862) BRAINF089541K8 POSSUM_01-POSSUM-C-BRAIN-2KB Trich... 40 6.8 2
(EK514713) 1095515493208 Global-Ocean-Sampling_GS-32-01-01-1... 40 6.9 2
(CO030282) EST808666 Coccidioides posadasii spherule cDNA li... 34 7.0 2
(GM883754) Sequence 98 from Patent WO2008137090. 38 7.5 3
(GC701944) Sequence 17189 from patent US 6812339. 32 8.0 2
(AC169728) Bos taurus clone CH240-196C13, WORKING DRAFT SEQU... 32 8.0 2
(AC010255) Homo sapiens chromosome 5 clone CTC-441N14, compl... 32 8.0 2
(AF168787) Homo sapiens vanilloid receptor gene, partial seq... 30 8.1 2
(AC224611) Bos taurus clone CH240-480I7, WORKING DRAFT SEQUE... 32 8.1 2
(AC078809) Homo sapiens 3 BAC RP11-600G3 (Roswell Park Cance... 32 8.2 2
(AC027040) Homo sapiens chromosome 17 clone RP11-601L9 map 1... 30 8.2 2
(AC126357) Homo sapiens chromosome 17 clone CTD-2560C17 map ... 30 8.2 2
(AC213968) Sorex araneus clone SA_Ba-527P10, WORKING DRAFT S... 30 8.3 2
(AC209506) Sorex araneus clone SA_Ba-403I10, WORKING DRAFT S... 30 8.3 2
(AC027796) Homo sapiens chromosome 17, clone RP11-235E17, co... 30 8.3 2
(DX520911) GH_MBb0054N16f GH_MBb Gossypium hirsutum genomic ... 34 8.4 3
(AC117476) Homo sapiens 3 BAC RP11-726H11 (Roswell Park Canc... 42 8.5 2
(AC090062) Homo sapiens chromosome 5 clone CTB-160P13, WORKI... 32 8.5 2
(AC215453) Solanum lycopersicum chromosome 2 clone C02SLe003... 36 8.5 5
(AC132942) Homo sapiens chromosome 17, clone RP11-48B14, com... 30 8.6 2
(AL157773) Human DNA sequence from clone RP11-345L23 on chro... 32 8.8 2
(AC097469) Homo sapiens BAC clone RP11-55N4 from 4, complete... 38 8.8 3
(FB669616) Sequence 261 from Patent WO2007144105. 30 9.1 2
(GC700634) Sequence 15879 from patent US 6812339. 30 9.1 2
(GC697192) Sequence 12437 from patent US 6812339. 30 9.1 2
(AL954663) Zebrafish DNA sequence from clone DKEY-47L19 in l... 34 9.6 6

>(C92785) Dictyostelium discoideum slug cDNA, clone SSF342.
Length = 437

Score = 664 bits (335), Expect = 0.0
Identities = 335/335 (100%)
Strand = Plus / Plus


Query: 1 cattattattatcagtcagacgaaaaaacacaattaattgaagctttttacaatttcgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cattattattatcagtcagacgaaaaaacacaattaattgaagctttttacaatttcgat 60


Query: 61 ggagactatgatggttttgttagtgtagaagaatttagaggaattattagagatggttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggagactatgatggttttgttagtgtagaagaatttagaggaattattagagatggttta 120


Query: 121 ccaatgactgaagctgaggtatgttatttttaaacaaaaagaaaattgtatataatataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ccaatgactgaagctgaggtatgttatttttaaacaaaaagaaaattgtatataatataa 180


Query: 181 agttaaattaccacattttatttttatactcactctcaaccttcattttaaataattaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 agttaaattaccacattttatttttatactcactctcaaccttcattttaaataattaca 240


Query: 241 gatcacagaattctttgaagcagctgatccaaataatacaggttttattgattataaagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gatcacagaattctttgaagcagctgatccaaataatacaggttttattgattataaagc 300


Query: 301 attcgctgcaatgttatattcagttgatgaatcat 335
|||||||||||||||||||||||||||||||||||
Sbjct: 301 attcgctgcaatgttatattcagttgatgaatcat 335

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 583,045,052
Number of extensions: 46269507
Number of successful extensions: 3798826
Number of sequences better than 10.0: 158
Length of query: 436
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 413
Effective length of database: 102,190,702,835
Effective search space: 42204760270855
Effective search space used: 42204760270855
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 8. 1
Homology vs Protein
Query= Contig-U05106-1 (Contig-U05106-1Q) /CSM_Contig/Contig-U05106-1Q.Seq.d
(436 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

U67860_1(U67860|pid:none) Acanthamoeba castellanii myosin IC lig... 36 0.37
AP008211_793(AP008211|pid:none) Oryza sativa (japonica cultivar-... 30 0.56
(Q0DJ94) RecName: Full=Probable calcium-binding protein CML21; A... 30 0.57
M59349_1(M59349|pid:none) Plasmodium falciparum calmodulin gene,... 35 0.63
MCWT(A03025;PC2046)calmodulin - wheat 35 1.1
(Q5Z676) RecName: Full=Probable calcium-binding protein CML29; A... 35 1.1
(Q40302) RecName: Full=Calmodulin; Short=CaM; &S53019(... 34 1.4
AY072054_1(AY072054|pid:none) Prorocentrum minimum calmodulin mR... 34 1.4
FB335866_1(FB335866|pid:none) Sequence 3392 from Patent WO200711... 34 1.4
AF020781_1(AF020781|pid:none) Symbiodinium microadriaticum calmo... 34 1.4
Y08373_1(Y08373|pid:none) T.gondii mRNA for calmodulin. 34 1.4
CP000586_388(CP000586|pid:none) Ostreococcus lucimarinus CCE9901... 29 1.5
EF134222_1(EF134222|pid:none) Noctiluca scintillans isolate Nsc-... 34 1.8
AF081669_1(AF081669|pid:none) Synthetic construct VU91B calmodul... 34 1.8
(Q9SRR7) RecName: Full=Calmodulin-like protein 3; &AC009853_20(... 34 1.8
JC1033(JC1033)calmodulin - garden pea 34 1.8
CR940348_242(CR940348|pid:none) Theileria annulata strain Ankara... 34 1.8
AF081670_1(AF081670|pid:none) Synthetic construct VU91C calmodul... 34 1.8
(P15094) RecName: Full=Calmodulin; Short=CaM; &J05116_... 34 1.8
CP001160_196(CP001160|pid:none) Thalassiosira pseudonana CCMP133... 33 2.4
CU633895_127(CU633895|pid:none) Podospora anserina genomic DNA c... 33 2.4
AF084398_1(AF084398|pid:none) Synthetic construct calmodulin mut... 33 2.4
AY484589_7(AY484589|pid:none) Musa acuminata clone MuH9, genomic... 33 2.4
AF084435_1(AF084435|pid:none) Synthetic construct calmodulin mut... 33 2.4
(P27165) RecName: Full=Calmodulin; Short=CaM; &(Q71UH5... 33 2.4
AK315809_1(AK315809|pid:none) Homo sapiens cDNA, FLJ79458 comple... 28 3.1
X97867_1(X97867|pid:none) H.sapiens mRNA for serine/threonine pr... 28 3.1
AK292235_1(AK292235|pid:none) Homo sapiens cDNA FLJ78608 complet... 28 3.1
AK300815_1(AK300815|pid:none) Homo sapiens cDNA FLJ50233 complet... 28 3.1
EU117990_1(EU117990|pid:none) Crassostrea gigas clone CBSN2241 c... 33 3.1
(P02595) RecName: Full=Calmodulin; Short=CaM; 33 3.1
S58311(S58311) calmodulin - Bidens pilosa &X89890_1(X89890|pid:... 33 3.1
(Q9NP86) RecName: Full=Calcium-binding protein 5; Short... 33 3.1
(Q9N1Q8) RecName: Full=Calcium-binding protein 5; Short... 33 3.1
AF064552_1(AF064552|pid:none) Apium graveolens calmodulin mRNA, ... 33 3.1
AF084402_1(AF084402|pid:none) Synthetic construct calmodulin mut... 33 3.1
AF084404_1(AF084404|pid:none) Synthetic construct calmodulin mut... 33 3.1
EU972284_1(EU972284|pid:none) Zea mays clone 379091 EF hand fami... 33 3.1
AF084399_1(AF084399|pid:none) Synthetic construct calmodulin mut... 33 3.1
EF081899_1(EF081899|pid:none) Picea sitchensis clone WS02711_N09... 33 3.1
FB335838_1(FB335838|pid:none) Sequence 3364 from Patent WO200711... 33 3.1
AF084430_1(AF084430|pid:none) Synthetic construct calmodulin mut... 33 3.1
EF441475_1(EF441475|pid:none) Actinidia sabiifolia clone A042 ca... 31 3.5
AF368285_1(AF368285|pid:none) Capsicum annuum calmodulin-like pr... 33 4.1
DQ431114_1(DQ431114|pid:none) Aegiceras corniculatum calmodulin ... 33 4.1
(P25069) RecName: Full=Calmodulin-2/3/5; Short=CaM-2/3/... 33 4.1
FB335828_1(FB335828|pid:none) Sequence 3354 from Patent WO200711... 33 4.1
CS560270_1(CS560270|pid:none) Sequence 857 from Patent WO2006032... 33 4.1
(Q7DMP0) RecName: Full=Calmodulin-2/4; Short=CaM-2/4; F... 33 4.1
U48691_1(U48691|pid:none) Triticum aestivum calmodulin TaCaM2-2 ... 33 4.1
AY656693_1(AY656693|pid:none) Daucus carota calmodulin cam-210 m... 33 4.1
AY364011_1(AY364011|pid:none) Daucus carota calmodulin 4 mRNA, p... 33 4.1
AC145330_23(AC145330|pid:none) Medicago truncatula clone mth2-17... 33 4.1
CS559978_1(CS559978|pid:none) Sequence 565 from Patent WO2006032... 33 4.1
CS560230_1(CS560230|pid:none) Sequence 817 from Patent WO2006032... 33 4.1
EF441522_1(EF441522|pid:none) Actinidia eriantha f. alba clone A... 33 4.1
(P13868) RecName: Full=Calmodulin-1; Short=CaM-1; &J04... 33 4.1
EF441519_1(EF441519|pid:none) Actinidia deliciosa var. chlorocar... 33 4.1
MCSP(A03024)calmodulin - spinach (tentative sequence) 33 4.1
AY275526_1(AY275526|pid:none) Pyrus communis calmodulin mRNA, pa... 33 4.1
(P17928) RecName: Full=Calmodulin; Short=CaM; &AF03003... 33 4.1
AY656686_1(AY656686|pid:none) Daucus carota calmodulin cam-203 m... 33 4.1
Z12023_1(Z12023|pid:none) A.thaliana mRNA (clone ACaM5) for calm... 33 4.1
CS559688_1(CS559688|pid:none) Sequence 275 from Patent WO2006032... 33 4.1
DQ778070_1(DQ778070|pid:none) Vigna radiata var. radiata calmodu... 33 4.1
(P59220) RecName: Full=Calmodulin-7; Short=CaM-7; &(P6... 33 4.1
AJ005039_1(AJ005039|pid:none) Nicotiana plumbaginifolia mRNA for... 33 4.1
EF441516_1(EF441516|pid:none) Actinidia polygama clone B008 calm... 33 4.1
CS559996_1(CS559996|pid:none) Sequence 583 from Patent WO2006032... 33 4.1
AF084394_1(AF084394|pid:none) Synthetic construct calmodulin mut... 33 4.1
CS560054_1(CS560054|pid:none) Sequence 641 from Patent WO2006032... 33 4.1
AJ271913_1(AJ271913|pid:none) Oryza sativa partial mRNA for puta... 33 4.1
CS559658_1(CS559658|pid:none) Sequence 245 from Patent WO2006032... 33 4.1
EU953726_1(EU953726|pid:none) Zea mays clone 1444940 calmodulin ... 33 4.1
BT034624_1(BT034624|pid:none) Zea mays full-length cDNA clone ZM... 33 4.1
EF441503_1(EF441503|pid:none) Actinidia deliciosa var. deliciosa... 33 4.1
(A2WN93) RecName: Full=Calmodulin-1; Short=CaM-1; &(P6... 33 4.1
EF441470_1(EF441470|pid:none) Actinidia deliciosa var. chlorocar... 33 4.1
FB335834_1(FB335834|pid:none) Sequence 3360 from Patent WO200711... 33 4.1
EF083909_1(EF083909|pid:none) Picea sitchensis clone WS0283_D07 ... 33 4.1
X98404_1(X98404|pid:none) C.annuum mRNA for calmodulin-2. 33 4.1
EU958713_1(EU958713|pid:none) Zea mays clone 1710893 calmodulin ... 33 4.1
(P41040) RecName: Full=Calmodulin; Short=CaM; &S40086(... 33 4.1
EF441484_1(EF441484|pid:none) Clematoclethra scandens subsp. tom... 33 4.1
(P27161) RecName: Full=Calmodulin; Short=CaM; &AB05083... 33 4.1
(P93087) RecName: Full=Calmodulin; Short=CaM; &AB05084... 33 4.1
AJ427337_1(AJ427337|pid:none) Brassica oleracea mRNA for calmodu... 33 4.1
EU976715_1(EU976715|pid:none) Zea mays clone 988332 unknown mRNA. 33 4.1
AY656690_1(AY656690|pid:none) Daucus carota caomodulin cam-207 m... 33 4.1
BT084442_1(BT084442|pid:none) Zea mays full-length cDNA clone ZM... 33 4.1
CP001329_519(CP001329|pid:none) Micromonas sp. RCC299 chromosome... 33 4.1
L14071_1(L14071|pid:none) Bryonia dioica calmodulin (Bc329) mRNA... 33 4.1
AF334833_1(AF334833|pid:none) Castanea sativa calmodulin mRNA, c... 33 4.1
AY517931_1(AY517931|pid:none) Arachis hypogaea calmodulin (CaM2)... 33 4.1
(Q7DMN9) RecName: Full=Calmodulin-5/6/7/8; Short=CaM-5/... 33 4.1
M73712_1(M73712|pid:none) Arabidopsis thaliana calmodulin-3 mRNA... 33 4.1
DQ881447_1(DQ881447|pid:none) Betula halophila calmodulin (CaM) ... 33 4.1
AF468661_1(AF468661|pid:none) Stevia rebaudiana calmodulin mRNA,... 33 4.1
AY752882_1(AY752882|pid:none) Aegiceras corniculatum calmodulin ... 33 4.1
S35185(S35185;S25133) calmodulin 4 - Arabidopsis thaliana &Z120... 33 4.1
AB211694_1(AB211694|pid:none) Cryptomeria japonica gene for puta... 33 4.1
AF388948_1(AF388948|pid:none) Elaeis oleifera calmodulin mRNA, p... 33 4.1
(P48976) RecName: Full=Calmodulin; Short=CaM; &X60737_... 33 4.1
EU959441_1(EU959441|pid:none) Zea mays clone 218171 calmodulin m... 33 4.1
CS559900_1(CS559900|pid:none) Sequence 487 from Patent WO2006032... 33 4.1
AY657030_1(AY657030|pid:none) Salvia miltiorrhiza calmodulin mRN... 33 4.1
AP008207_956(AP008207|pid:none) Oryza sativa (japonica cultivar-... 33 4.1
CS559822_1(CS559822|pid:none) Sequence 409 from Patent WO2006032... 33 4.1
X90560_1(X90560|pid:none) Physcomitrella patens mRNA for calmodu... 33 4.1
DQ217243_1(DQ217243|pid:none) Taeniopygia guttata clone 0061P000... 33 4.1
AJ251808_1(AJ251808|pid:none) Lotus japonicus mRNA for calcium-b... 33 4.1
CS560116_1(CS560116|pid:none) Sequence 703 from Patent WO2006032... 33 4.1
FB334965_1(FB334965|pid:none) Sequence 2491 from Patent WO200711... 32 5.3
EU965665_1(EU965665|pid:none) Zea mays clone 287797 calcium-bind... 32 5.3
DQ122882_1(DQ122882|pid:none) Chlamydomonas incerta calmodulin m... 32 5.3
(Q10LX4) RecName: Full=Probable calcium-binding protein CML27; A... 32 5.3
AJ843113_1(AJ843113|pid:none) Quercus petraea mRNA for calmoduli... 32 5.3
AE016817_63(AE016817|pid:none) Ashbya gossypii (= Eremothecium g... 32 5.3
AY517933_1(AY517933|pid:none) Arachis hypogaea calmodulin (CaM1)... 32 5.3
(O60041) RecName: Full=Calmodulin; Short=CaM; &AJ00202... 32 5.3
(P18061) RecName: Full=Calmodulin; Short=CaM; &AM49494... 32 5.3
(O01305) RecName: Full=Calcium vector protein; Short=CA... 32 5.3
CR382131_1419(CR382131|pid:none) Yarrowia lipolytica strain CLIB... 32 5.3
(P04352) RecName: Full=Calmodulin; Short=CaM; &M20729_... 32 5.3
(P04573) RecName: Full=Calcium vector protein; Short=CA... 32 5.3
EF441489_1(EF441489|pid:none) Actinidia kolomikta clone A018 cal... 32 7.0
EU971001_1(EU971001|pid:none) Zea mays clone 355607 calmodulin m... 32 7.0
FJ685645_1(FJ685645|pid:none) Euglena gracilis calmodulin III mR... 32 7.0
AF084437_1(AF084437|pid:none) Synthetic construct calmodulin mut... 32 7.0
AF084438_1(AF084438|pid:none) Synthetic construct calmodulin mut... 32 7.0
AF084449_1(AF084449|pid:none) Synthetic construct calmodulin mut... 32 7.0
M11334_1(M11334|pid:none) Synthetic construct VU1 calmodulin gen... 32 7.0
(Q95NI4) RecName: Full=Calmodulin; Short=CaM; &AB06318... 32 7.0
AF084434_1(AF084434|pid:none) Synthetic construct calmodulin mut... 32 7.0
AF084412_1(AF084412|pid:none) Synthetic construct calmodulin mut... 32 7.0
AF084441_1(AF084441|pid:none) Synthetic construct calmodulin mut... 32 7.0
AF084401_1(AF084401|pid:none) Synthetic construct calmodulin mut... 32 7.0
EF441486_1(EF441486|pid:none) Actinidia sabiifolia clone H043 ca... 32 7.0
AF084451_1(AF084451|pid:none) Synthetic construct calmodulin mut... 32 7.0
AF084442_1(AF084442|pid:none) Synthetic construct calmodulin mut... 32 7.0
AF084395_1(AF084395|pid:none) Synthetic construct calmodulin mut... 32 7.0
(O97341) RecName: Full=Calmodulin; Short=CaM; &Y18166_... 32 7.0
AF084393_1(AF084393|pid:none) Synthetic construct calmodulin mut... 32 7.0
AY813180_1(AY813180|pid:none) Schistosoma japonicum clone SJCHGC... 32 7.0
(P05932) RecName: Full=Calmodulin-beta; Short=Cam B; Fl... 32 7.0
EU008747_1(EU008747|pid:none) Stachybotrys elegans clone Se4645 ... 32 7.0
AY656694_1(AY656694|pid:none) Daucus carota calmodulin cam-211 m... 32 7.0
(O96081) RecName: Full=Calmodulin-B; Short=CaM B; &AB0... 32 7.0
A45940(A45940)calmodulin - sea urchin (Strongylocentrotus purpur... 32 7.0
AF084396_1(AF084396|pid:none) Synthetic construct calmodulin mut... 32 7.0
AF084428_1(AF084428|pid:none) Synthetic construct calmodulin mut... 32 7.0
CP001574_245(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 32 7.0
AF084413_1(AF084413|pid:none) Synthetic construct calmodulin mut... 32 7.0
AJ698916_1(AJ698916|pid:none) Populus euramericana mRNA for puta... 32 7.0
(Q40642) RecName: Full=Calmodulin-like protein 1; AltName: Full=... 32 7.0
AM479591_1(AM479591|pid:none) Vitis vinifera contig VV78X157724.... 32 7.0
AF084425_1(AF084425|pid:none) Synthetic construct calmodulin mut... 32 7.0
EF441488_1(EF441488|pid:none) Actinidia melliana clone KH47 calm... 32 7.0
EF441485_1(EF441485|pid:none) Actinidia sabiifolia clone A085 ca... 32 7.0
EF144933_1(EF144933|pid:none) Populus trichocarpa clone WS0111_A... 32 7.0
EF441529_1(EF441529|pid:none) Actinidia deliciosa var. deliciosa... 32 9.1
AF084424_1(AF084424|pid:none) Synthetic construct calmodulin mut... 32 9.1
EF082571_1(EF082571|pid:none) Picea sitchensis clone WS02719_O06... 32 9.1
BT063064_1(BT063064|pid:none) Zea mays full-length cDNA clone ZM... 32 9.1
AF362730_1(AF362730|pid:none) Lycopersicon esculentum succinate ... 32 9.1
AY789836_1(AY789836|pid:none) Silicularia rosea voucher 152NZ ca... 32 9.1
AK072758_1(AK072758|pid:none) Oryza sativa Japonica Group cDNA c... 32 9.1
AF084400_1(AF084400|pid:none) Synthetic construct calmodulin mut... 32 9.1
AM467254_2(AM467254|pid:none) Vitis vinifera contig VV78X138892.... 32 9.1
(P53440) RecName: Full=Calmodulin, flagellar; AltName: Full=CAM-... 32 9.1
AF084416_1(AF084416|pid:none) Synthetic construct calmodulin mut... 32 9.1
(P11118) RecName: Full=Calmodulin; Short=CaM; &EU93585... 32 9.1

>U67860_1(U67860|pid:none) Acanthamoeba castellanii myosin IC light
chain mRNA, complete cds.
Length = 149

Score = 36.2 bits (82), Expect = 0.37
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1

Query: 7 YYQSDEKTQLIEAFYNFDGDYDGFVSVEEFRGIIRD-GLPMTEAEV 141
Y D + LIEAF FD D GF+SV E R I+ + G +T+ EV
Sbjct: 75 YSSVDNERDLIEAFQVFDKDGKGFISVMELRSILCNMGEKLTDQEV 120

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 485,386,077
Number of extensions: 7818510
Number of successful extensions: 18307
Number of sequences better than 10.0: 172
Number of HSP's gapped: 18306
Number of HSP's successfully gapped: 180
Length of query: 145
Length of database: 1,061,185,681
Length adjustment: 108
Effective length of query: 37
Effective length of database: 708,193,297
Effective search space: 26203151989
Effective search space used: 26203151989
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)

PSORT

psg: 0.68 gvh: 0.47 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.37 mip: 0.07
nuc: 1.00 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: nuclear
20.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for Contig-U05106-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0