Contig-U05100-1
Contig ID Contig-U05100-1
Contig update 2002. 9.13
Contig sequence
>Contig-U05100-1 (Contig-U05100-1Q) /CSM_Contig/Contig-U05100-1Q.Seq.d
ACACACAACATTATATATAAAATGTCATTCTTTAGAAATTTAACACAAAA
AATCAGTCAATCATTAAAATCACCAGCACCAGCAGTTAGATTTTCAGCAC
CACCAAGCAATGCTTTTAATGTTAGACCAGTTGAACCAGCAGAAGAAATG
ATTAATAAAGTTAGACCAGTTGAAATTGAAGGTTCAAGTGTTGGTTGTGA
TGGTGGTAATGGTCCATTAGGACATCCAATGGTTTATATTAATCTTGATG
GTAAAGAACCTCAACCATGTGGTTATTGTGGTCTTAGATTCGTCCAAAAA
CATGGTCACCACCACCATTAAATAATATATATACATACATAATATTTATA
ATTAATCAAAAATGAAAAAAAAGATAGAAGAAAGAAAAAAAGTTTTAAAG
AACAATAAAGTATCGATAATTATTCCTAATACAAAAAAAAAAAAAAAAAA
AAAAAAAAAAATACCTTTTAAAAAAGTAATAAATAAATAAAAAAACCCAC
CCAATTGTAA

Gap no gap
Contig length 510
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 318914
End point 318403
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 5
Link to clone list U05100
List of clone(s)

est1=VSA148E,1,436
est2=VSJ866F,6,442
est3=VSJ866Z,6,374
est4=SSF266E,17,432
est5=VSB724E,26,511
Translated Amino Acid sequence
THNIIYKMSFFRNLTQKISQSLKSPAPAVRFSAPPSNAFNVRPVEPAEEMINKVRPVEIE
GSSVGCDGGNGPLGHPMVYINLDGKEPQPCGYCGLRFVQKHGHHHH*iiyiht*yl*lik
nekkdrrkkksfkeq*sidnys*ykkkkkkkkkntf*ksnk*ikkptql*


Translated Amino Acid sequence (All Frames)
Frame A:
THNIIYKMSFFRNLTQKISQSLKSPAPAVRFSAPPSNAFNVRPVEPAEEMINKVRPVEIE
GSSVGCDGGNGPLGHPMVYINLDGKEPQPCGYCGLRFVQKHGHHHH*iiyiht*yl*lik
nekkdrrkkksfkeq*sidnys*ykkkkkkkkkntf*ksnk*ikkptql*


Frame B:
httlyikchslei*hkksvnh*nhqhqqldfqhhqamllmldqlnqqkk*likldqlklk
vqvlvvmvvmvh*diqwfililmvknlnhvvivvldssknmvtttik*yiyihniyn*sk
mkkkieerkkvlknnkvsiiipntkkkkkkkkkipfkkvink*knppnc


Frame C:
tqhyi*nvil*kfntknqsiikitstss*ifsttkqcf*c*ts*tsrrnd**s*ts*n*r
fkcwl*ww*wsirtsngly*s*w*rtstmwllws*irpktwsppplnniytyiifiinqk
*kkr*kkekkf*rtikyr*lfliqkkkkkkkkkyllkk**inkkthpiv


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05100-1 (Contig-U05100-1Q)
/CSM_Contig/Contig-U05100-1Q.Seq.d
(510 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05100-1 (Contig-U05100-1Q) /CSM_Contig/Conti... 708 0.0
Contig-U11873-1 (Contig-U11873-1Q) /CSM_Contig/Conti... 42 6e-04
Contig-U05048-1 (Contig-U05048-1Q) /CSM_Contig/Conti... 42 6e-04
Contig-U14041-1 (Contig-U14041-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U14025-1 (Contig-U14025-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U09474-1 (Contig-U09474-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U03923-1 (Contig-U03923-1Q) /CSM_Contig/Conti... 36 0.035
Contig-U14880-1 (Contig-U14880-1Q) /CSM_Contig/Conti... 34 0.14
Contig-U13054-1 (Contig-U13054-1Q) /CSM_Contig/Conti... 34 0.14
Contig-U11814-1 (Contig-U11814-1Q) /CSM_Contig/Conti... 34 0.14

>Contig-U05100-1 (Contig-U05100-1Q) /CSM_Contig/Contig-U05100-1Q.Seq.d
Length = 510

Score = 708 bits (357), Expect = 0.0
Identities = 357/357 (100%)
Strand = Plus / Plus


Query: 1 acacacaacattatatataaaatgtcattctttagaaatttaacacaaaaaatcagtcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acacacaacattatatataaaatgtcattctttagaaatttaacacaaaaaatcagtcaa 60


Query: 61 tcattaaaatcaccagcaccagcagttagattttcagcaccaccaagcaatgcttttaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcattaaaatcaccagcaccagcagttagattttcagcaccaccaagcaatgcttttaat 120


Query: 121 gttagaccagttgaaccagcagaagaaatgattaataaagttagaccagttgaaattgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gttagaccagttgaaccagcagaagaaatgattaataaagttagaccagttgaaattgaa 180


Query: 181 ggttcaagtgttggttgtgatggtggtaatggtccattaggacatccaatggtttatatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggttcaagtgttggttgtgatggtggtaatggtccattaggacatccaatggtttatatt 240


Query: 241 aatcttgatggtaaagaacctcaaccatgtggttattgtggtcttagattcgtccaaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatcttgatggtaaagaacctcaaccatgtggttattgtggtcttagattcgtccaaaaa 300


Query: 301 catggtcaccaccaccattaaataatatatatacatacataatatttataattaatc 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 catggtcaccaccaccattaaataatatatatacatacataatatttataattaatc 357


Score = 81.8 bits (41), Expect = 7e-16
Identities = 41/41 (100%)
Strand = Plus / Plus


Query: 392 gttttaaagaacaataaagtatcgataattattcctaatac 432
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gttttaaagaacaataaagtatcgataattattcctaatac 432


Score = 30.2 bits (15), Expect = 2.2
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 496 cccacccaattgtaa 510
|||||||||||||||
Sbjct: 496 cccacccaattgtaa 510


>Contig-U11873-1 (Contig-U11873-1Q) /CSM_Contig/Contig-U11873-1Q.Seq.d
Length = 1416

Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 306 tcaccaccaccattaaataat 326
|||||||||||||||||||||
Sbjct: 913 tcaccaccaccattaaataat 933


>Contig-U05048-1 (Contig-U05048-1Q) /CSM_Contig/Contig-U05048-1Q.Seq.d
Length = 947

Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Minus


Query: 307 caccaccaccattaaataata 327
|||||||||||||||||||||
Sbjct: 305 caccaccaccattaaataata 285


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7569
Number of Sequences: 6905
Number of extensions: 7569
Number of successful extensions: 943
Number of sequences better than 10.0: 319
length of query: 510
length of database: 5,674,871
effective HSP length: 16
effective length of query: 494
effective length of database: 5,564,391
effective search space: 2748809154
effective search space used: 2748809154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7.12
Homology vs DNA
Query= Contig-U05100-1 (Contig-U05100-1Q) /CSM_Contig/Contig-U05100-1Q.Seq.d
(510 letters)

Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU270600) Dictyostelium discoideum vegetative cDNA clone:VS... 698 0.0 2
(AU261312) Dictyostelium discoideum vegetative cDNA clone:VS... 482 0.0 3
(C92955) Dictyostelium discoideum slug cDNA, clone SSF266. 676 0.0 2
(AU262203) Dictyostelium discoideum vegetative cDNA clone:VS... 658 0.0 3
(AU270601) Dictyostelium discoideum vegetative cDNA clone:VS... 698 0.0 1
(DW014275) w7n16_M13F Myzus persicae, tobacco lineage, whole... 54 0.005 1
(CV635972) EST914725 Field isolate cDNA library Plasmodium v... 54 0.005 1
(AL844504) Plasmodium falciparum 3D7 chromosome 5. 48 0.006 7
(DK966334) Papilio xuthus mRNA, clone: PxutEST_HY5d09, 3' en... 52 0.022 1
(ES728720) PNLP07E02_10139 cDNA Normal Intestine H. glaberri... 52 0.022 1
(EY390364) CAXA8695.rev CAXA Helobdella robusta Subtracted L... 46 0.040 2
(AC121974) Mus musculus BAC clone RP24-285E14 from chromosom... 36 0.049 5
(CT737195) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.053 2
(DJ386588) Diagnosis of Diseases Associated with Metastasis. 44 0.075 3
(AX348594) Sequence 52 from Patent WO0202807. 44 0.075 3
(AX281384) Sequence 48 from Patent WO0177376. 44 0.075 3
(AL845367) Zebrafish DNA sequence from clone DKEYP-33D4 in l... 50 0.085 1
(AL355351) Human DNA sequence from clone RP11-337M11 on chro... 50 0.085 1
(AC180380) Strongylocentrotus purpuratus clone R3-3113F23, W... 50 0.085 1
(FI820237) SIR-59F10TF Sisymbrium irio BAC library SIR Sisym... 50 0.085 1
(FG539278) OtL004E06_112706d Onthophagus taurus larval libra... 50 0.085 1
(BX470227) Zebrafish DNA sequence from clone CH211-12D10 in ... 42 0.10 6
(FD482972) HA_MX2_31a07_SP6 Lobster Multiple Tissues, Normal... 38 0.14 2
(AC110569) Mus musculus chromosome 15, clone RP23-309J17, co... 38 0.19 2
(CU855609) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 0.20 2
(AC074093) Homo sapiens BAC clone RP11-206I11 from 2, comple... 46 0.24 4
(CT737154) Zebrafish DNA sequence from clone DKEY-168A14 in ... 48 0.34 1
(AM480423) Vitis vinifera contig VV78X233461.7, whole genome... 48 0.34 1
(AL844501) Plasmodium falciparum strain 3D7, chromosome 1. 48 0.34 1
(FH332999) CHO_OF4585xo03r1.ab1 CHO_OF4 Nicotiana tabacum ge... 48 0.34 1
(FH136161) CHO_OF3663xk18r1.ab1 CHO_OF3 Nicotiana tabacum ge... 48 0.34 1
(FH083355) CHO_OF3027xe11r1.ab1 CHO_OF3 Nicotiana tabacum ge... 48 0.34 1
(ET981842) CHO_OF268xc07f1.ab1 CHO_OF Nicotiana tabacum geno... 48 0.34 1
(DX551531) GH_MBb0044J09r GH_MBb Gossypium hirsutum genomic ... 48 0.34 1
(AC223839) Bos taurus clone CH240-456P24, WORKING DRAFT SEQU... 40 0.35 3
(AC113840) Rattus norvegicus clone CH230-126F2, WORKING DRAF... 42 0.53 3
(FK911939) EST_lsal_evj_955281 lsalevj mixed_tissue_mixed_st... 38 0.61 2
(AL844509) Plasmodium falciparum 3D7 chromosome 13. 34 0.61 2
(EX475766) EST_lsal_evj_792636 lsalevj mixed_tissue_mixed_st... 38 0.64 2
(FK911938) EST_lsal_evj_960657 lsalevj mixed_tissue_mixed_st... 38 0.67 2
(AL049183) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 34 0.71 2
(AC173355) Strongylocentrotus purpuratus clone R3-1024A12, W... 40 0.74 3
(AC110478) Rattus norvegicus clone CH230-30L8, *** SEQUENCIN... 40 0.76 5
(BZ575053) msh2_4279.x1 msh Pseudomonas aeruginosa genomic c... 36 0.95 2
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete... 38 1.1 6
(CU914774) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 1.1 3
(AC165869) Bos taurus clone CH240-176A24, WORKING DRAFT SEQU... 44 1.2 3
(CU855879) Zebrafish DNA sequence from clone CH73-159H2 in l... 46 1.3 1
(CU463106) Zebrafish DNA sequence from clone CH73-377P11 in ... 46 1.3 1
(CU459082) Zebrafish DNA sequence from clone CH73-68B22 in l... 46 1.3 1
(BX005073) Zebrafish DNA sequence from clone CH211-129N18. 46 1.3 1
(AB239443) Carassius auratus hsp27 mRNA for heat shock prote... 46 1.3 1
(AC159965) Mus musculus chromosome 15, clone RP23-471C16, co... 46 1.3 1
(AC113542) Mus musculus chromosome 5, clone RP23-195A18, com... 46 1.3 1
(AC111137) Mus musculus chromosome 5, clone RP23-357C4, comp... 46 1.3 1
(AC104102) Mus musculus BAC clone RP24-377I13 from 15, compl... 46 1.3 1
(AC099770) Mus musculus Strain C57BL6/J chromosome 5 BAC, RP... 46 1.3 1
(BS000055) Pan troglodytes chromosome 22 clone:RP43-136G21, ... 46 1.3 1
(BS000054) Pan troglodytes chromosome 22 clone:RP43-147F06, ... 46 1.3 1
(AC217134) MACACA MULATTA BAC clone CH250-265J16 from chromo... 46 1.3 1
(AC212744) MACACA MULATTA BAC clone CH250-277C1 from chromos... 46 1.3 1
(AC200714) Rhesus Macaque BAC CH250-310I22 () complete sequ... 46 1.3 1
(AM466218) Vitis vinifera contig VV78X227032.5, whole genome... 46 1.3 1
(AC018632) Genomic Sequence For Arabidopsis thaliana Clone F... 46 1.3 1
(AB020755) Arabidopsis thaliana genomic DNA, chromosome 5, P... 46 1.3 1
(DD000797) PLANT ARTIFICIAL CHROMOSOME COMPOSITIONS AND METH... 46 1.3 1
(GN009057) Sequence 1498 from Patent EP2014669. 46 1.3 1
(AX059482) Sequence 215 from Patent WO0055325. 46 1.3 1
(AR777042) Sequence 197 from patent US 6972197. 46 1.3 1
(AC108675) Homo sapiens 3 BAC RP11-760N13 (Roswell Park Canc... 46 1.3 1
(AC093545) Homo sapiens chromosome X clone RP5-1015P16A, com... 46 1.3 1
(AC007486) Homo sapiens clone DJ1015P16A, complete sequence. 46 1.3 1
(AC005274) Homo sapiens chromosome 17, clone hRPK.1090_M_7, ... 46 1.3 1
(AC004168) Homo sapiens chromosome 4 clone B159L21 map 4q25,... 46 1.3 1
(AC112828) Rattus norvegicus clone CH230-44M16, *** SEQUENCI... 46 1.3 1
(AC110974) Rattus norvegicus clone CH230-153K23, WORKING DRA... 46 1.3 1
(AC097089) Rattus norvegicus clone CH230-173B12, WORKING DRA... 46 1.3 1
(FP085419) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.3 1
(CU469269) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.3 1
(AC036200) Homo sapiens chromosome 2 clone RP11-479K24 map 2... 46 1.3 1
(CU467733) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.3 1
(CT827870) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.3 1
(AC207499) Gorilla gorilla gorilla clone CH255-242E5, WORKIN... 46 1.3 1
(AC192647) Cavia porcellus clone CH234-148H15, WORKING DRAFT... 46 1.3 1
(AC181133) Strongylocentrotus purpuratus clone R3-3037E15, W... 46 1.3 1
(AC016440) Homo sapiens clone RP11-30I11, WORKING DRAFT SEQU... 46 1.3 1
(FT156977) Rattus norvegicus DNA, BAC clone: RNB2-350C17, 5'... 46 1.3 1
(FT066471) Rattus norvegicus DNA, BAC clone: RNB2-094F12, 5'... 46 1.3 1
(FT034682) Rattus norvegicus DNA, BAC clone: RNB2-049P24, 5'... 46 1.3 1
(AQ334023) HS_5003_A2_F05_SP6E RPCI11 Human Male BAC Library... 46 1.3 1
(DX524158) GH_MBb0031O11f GH_MBb Gossypium hirsutum genomic ... 46 1.3 1
(AJ834338) Arabidopsis thaliana T-DNA flanking sequence, lef... 46 1.3 1
(DH004000) Oryzias latipes Fosmid clone:GOLWFno83_n07, forwa... 46 1.3 1
(DE326519) Bombyx mori genomic DNA, BAC clone:BES_645_G13. 46 1.3 1
(DE320857) Bombyx mori genomic DNA, BAC clone:BES_624_G13. 46 1.3 1
(DW281726) UI-S-HH0-ads-h-01-0-UI.s1 UI-S-HH0 Euprymna scolo... 46 1.3 1
(DW254521) UI-S-GB1-aao-i-07-0-UI.s1 UI-S-GB1 Euprymna scolo... 46 1.3 1
(CV831581) ID0ACC18CH05RM1 ID0ACC Acyrthosiphon pisum cDNA c... 46 1.3 1
(CN763296) ID0AAA6CF07RM1 ApMS Acyrthosiphon pisum cDNA clon... 46 1.3 1
(CB818563) EST 3652 Half-Ripe Apricot Fruit Lambda Zap II Li... 46 1.3 1
(AI334205) qq09e08.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clo... 46 1.3 1
(GO273313) AOTC542.rev AOTC Teleopsis dalmanni Mid-pupal eye... 46 1.3 1
(FF297017) 279316120 Pea aphid whole body normalized full le... 46 1.3 1
(FD334079) CBPN17948.g1 CBPN: Subtracted channel catfish cDN... 46 1.3 1
(FD216179) CBZF13451.g1 CBZF: Normalized blue catfish cDNA l... 46 1.3 1
(FD160370) CBZC4504.g1 CBZC: Normalized blue catfish cDNA li... 46 1.3 1
(FD160369) CBZC4504.b1 CBZC: Normalized blue catfish cDNA li... 46 1.3 1
(EX652197) 256757393 Pea aphid whole body normalized full le... 46 1.3 1
(AC102825) Mus musculus chromosome 15, clone RP24-227B12, co... 38 1.4 5
(FM995166) Nakaseomyces bacillisporus complete mitochondrial... 34 1.4 5
(AC123324) Rattus norvegicus clone CH230-226F11, WORKING DRA... 34 1.5 5
(CU607011) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 1.5 2
(EY338372) CAWY8968.rev CAWY Helobdella robusta Subtracted E... 34 1.6 2
(BH652473) BOHXR87TF BO_2_3_KB Brassica oleracea genomic clo... 36 1.7 3
(AL663063) Mouse DNA sequence from clone RP23-407H16 on chro... 40 1.7 4
(BB655236) Mus musculus 9 days embryo cDNA, RIKEN full-lengt... 38 1.7 2
(AC125951) Rattus norvegicus clone CH230-315L9, WORKING DRAF... 38 1.8 2
(AC009794) Homo sapiens chromosome 4 clone RP11-343C10 map 4... 44 1.8 5
(EY317605) CAWX401.rev CAWX Helobdella robusta Primary Early... 34 1.9 2
(EY356505) CAWZ4394.rev CAWZ Helobdella robusta Primary Late... 34 1.9 2
(GR202322) CBPI5294.g1 CBPI Mimulus lewisii floral buds (L) ... 40 1.9 2
(DE859027) Macropus eugenii DNA, BAC clone: MEB1-024O23_F, 5... 38 1.9 2
(EY292292) CAWX10474.rev CAWX Helobdella robusta Primary Ear... 34 2.0 2
(FP236172) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 2.0 3
(EY323347) CAWX8949.rev CAWX Helobdella robusta Primary Earl... 34 2.0 2
(AC112619) Rattus norvegicus clone CH230-233I2, *** SEQUENCI... 34 2.0 5
(AC106904) Rattus norvegicus clone CH230-148L20, *** SEQUENC... 44 2.1 4
(CU856625) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 2.1 5
(BX248326) Zebrafish DNA sequence from clone DKEY-260N20 in ... 36 2.4 5
(FD715225) CAAA18772.fwd CAAA Petromyzon marinus Petromyzon ... 34 2.5 2
(AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 34 2.5 2
(DQ927304) Tetrahymena paravorax strain RP mitochondrion, co... 34 2.8 2
(AC006729) Caenorhabditis elegans cosmid Y24D9A, complete se... 34 2.9 2
(U61953) Caenorhabditis elegans cosmid R08C7, complete seque... 34 2.9 2
(AC140138) Homo sapiens chromosome 5 clone RP11-1413P2, WORK... 36 3.0 5
(AC002541) Homo sapiens BAC clone CTB-43K6 from 7, complete ... 44 3.1 4
(CU915645) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 3.1 3
(AF125966) Caenorhabditis elegans cosmid Y68G5A, complete se... 34 3.2 2
(AP000626) Homo sapiens genomic DNA, chromosome 11q clone:CM... 40 3.3 4
(FI711512) BOT01-47P9TR BOT01 Brassica oleracea genomic clon... 34 3.5 2
(FI710438) BOT01-47M17TR BOT01 Brassica oleracea genomic clo... 34 3.5 2
(EJ725994) 1092959500267 Global-Ocean-Sampling_GS-30-02-01-1... 32 3.5 2
(BZ510515) BOMQB81TF BO_2_3_KB Brassica oleracea genomic clo... 34 3.5 2
(EY391686) CAXA9402.rev CAXA Helobdella robusta Subtracted L... 34 3.5 2
(BH570891) BOHFG32TF BOHF Brassica oleracea genomic clone BO... 34 3.5 2
(EY380275) CAXA2786.rev CAXA Helobdella robusta Subtracted L... 34 3.5 2
(FI700013) BOT01-32P1TR BOT01 Brassica oleracea genomic clon... 34 3.5 2
(AC011757) Drosophila melanogaster clone BACR13E23, complete... 36 3.5 3
(EB288608) CNSN01-F-009834-501 Normalized CNS library (juven... 36 3.7 2
(EB319272) CNSN01-F-011142-501 Normalized CNS library (juven... 36 3.8 2
(AC117349) Rattus norvegicus clone CH230-329M4, WORKING DRAF... 40 3.8 4
(BX890565) Zebrafish DNA sequence from clone CH211-250G22. 38 4.0 2
(BX548072) Zebrafish DNA sequence from clone DKEYP-84A8 in l... 34 4.1 4
(BX229203) Danio rerio genomic clone DKEY-52F1, genomic surv... 30 4.2 3
(AC136759) Homo sapiens chromosome 11, clone RP11-114J20, co... 40 4.2 5
(CR555302) Zebrafish DNA sequence from clone CH211-212C19 in... 44 4.4 3
(AE014186) Plasmodium falciparum 3D7 chromosome 11, complete... 44 4.5 6
(AC095173) Rattus norvegicus clone CH230-8O21, WORKING DRAFT... 40 4.9 5
(AC115334) Rattus norvegicus clone CH230-182F14, WORKING DRA... 40 4.9 3
(AC129704) Rattus norvegicus clone CH230-9I1, *** SEQUENCING... 38 5.1 5
(BX649327) Zebrafish DNA sequence from clone CH211-197G15 in... 36 5.1 6
(CR450817) Zebrafish DNA sequence from clone DKEYP-74B4 in l... 44 5.3 1
(BX927369) Zebrafish DNA sequence from clone CH211-134A4 in ... 44 5.3 1
(BX322629) Zebrafish DNA sequence from clone CH211-228B4 in ... 44 5.3 1
(AL929284) Zebrafish DNA sequence from clone CH211-160H23 in... 44 5.3 1
(BV024289) S212P6771FA2.T0 CZECHII/Ei Mus musculus STS genom... 44 5.3 1
(AB148854) Homo sapiens DNA, STS on chromosome 4, D4S0966i, ... 44 5.3 1
(AL844564) Mouse DNA sequence from clone RP23-400D4 on chrom... 44 5.3 1
(AL662893) Mouse DNA sequence from clone RP23-202G21 on chro... 44 5.3 1
(AL645547) Mouse DNA sequence from clone RP23-158M12 on chro... 44 5.3 1
(AL607030) Mouse DNA sequence from clone RP23-304O12 on chro... 44 5.3 1
(AL589738) Mouse DNA sequence from clone RP23-322J11 on chro... 44 5.3 1
(AF200361) Rattus norvegicus cytochrome P450 4F1 (Cyp4F1) ge... 44 5.3 1
(AC165087) Mus musculus BAC clone RP23-198K7 from chromosome... 44 5.3 1
(AC131919) Mus musculus chromosome 15, clone RP24-239J20, co... 44 5.3 1
(AC115877) Mus musculus chromosome 15, clone RP24-358H21, co... 44 5.3 1
(AC034255) Mus musculus strain C57BL6/J chromosome 6 clone R... 44 5.3 1
(AC195668) Pan troglodytes BAC clone CH251-180E21 from chrom... 44 5.3 1
(EF623858) Glycine max cultivar Williams 82 clone 28O17, com... 44 5.3 1
(DQ415921) Cleome spinosa clone BAC Cs2, complete sequence. 44 5.3 1
(AP008217) Oryza sativa (japonica cultivar-group) genomic DN... 44 5.3 1
(AM482142) Vitis vinifera, whole genome shotgun sequence, co... 44 5.3 1
(AC135957) Oryza sativa Japonica Group chromosome 11 clone O... 44 5.3 1
(EA333254) Sequence 5746 from patent US 7306913. 44 5.3 1
(EA024133) Sequence 979 from patent US 7135558. 44 5.3 1
(DJ454949) Method for analysing genome using microsatellite ... 44 5.3 1
(CQ591392) Sequence 19150 from Patent WO0171042. 44 5.3 1
(GP300248) Sequence 7290 from patent US 7510834. 44 5.3 1
(GP148442) Sequence 17905 from patent US 7482117. 44 5.3 1
(AL844508) Plasmodium falciparum 3D7 chromosome 9. 44 5.3 1
(AE014188) Plasmodium falciparum 3D7 chromosome 12, complete... 44 5.3 1
(AE013599) Drosophila melanogaster chromosome 2R, complete s... 44 5.3 1
(AC007475) Drosophila melanogaster, chromosome 2R, region 49... 44 5.3 1
(AC007474) Drosophila melanogaster, chromosome 2R, region 49... 44 5.3 1
(BC030992) Homo sapiens cDNA clone IMAGE:4273559, partial cds. 44 5.3 1
(AL139098) Human DNA sequence from clone RP1-276J11 on chrom... 44 5.3 1
(AC215696) Homo sapiens FOSMID clone ABC13-48875400A8 from c... 44 5.3 1
(AC104841) Homo sapiens BAC clone RP11-475G3 from 2, complet... 44 5.3 1
(AC104529) Homo sapiens chromosome 19 clone LLNLF-25B2, comp... 44 5.3 1
(AC091601) Homo sapiens BAC clone RP11-653G16 from 4, comple... 44 5.3 1
(AC020602) Homo sapiens BAC clone RP11-461M18 from 2, comple... 44 5.3 1
(AC005104) Homo sapiens BAC clone CTA-442F18 from 2, complet... 44 5.3 1
(AC162695) Bos taurus clone CH240-126J7, WORKING DRAFT SEQUE... 44 5.3 1
(AC158838) Bos taurus clone CH240-297N14, WORKING DRAFT SEQU... 44 5.3 1
(AC152430) Bos taurus clone CH240-5D14, WORKING DRAFT SEQUEN... 44 5.3 1
(AC151262) Mus musculus chromosome 17 clone RP24-393C12, ***... 44 5.3 1
(AC126952) Rattus norvegicus clone CH230-15I4, *** SEQUENCIN... 44 5.3 1
(AC126225) Papio anubis clone RP41-108K14, WORKING DRAFT SEQ... 44 5.3 1
(AC124082) Mus musculus chromosome 17 clone RP24-393C12 map ... 44 5.3 1
(AC123365) Rattus norvegicus clone CH230-447C7, WORKING DRAF... 44 5.3 1
(AC117282) Rattus norvegicus clone CH230-358I17, WORKING DRA... 44 5.3 1
(AC110685) Rattus norvegicus clone CH230-203O8, *** SEQUENCI... 44 5.3 1
(AC109942) Rattus norvegicus clone CH230-70I20, WORKING DRAF... 44 5.3 1
(AC108247) Rattus norvegicus clone CH230-226I3, *** SEQUENCI... 44 5.3 1
(AC105690) Rattus norvegicus clone CH230-199F16, *** SEQUENC... 44 5.3 1
(AC103003) Rattus norvegicus clone CH230-184J12, WORKING DRA... 44 5.3 1
(AC097788) Rattus norvegicus clone CH230-92I21, WORKING DRAF... 44 5.3 1
(AC095316) Rattus norvegicus clone CH230-33J13, *** SEQUENCI... 44 5.3 1
(FP102198) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.3 1
(CU928648) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.3 1
(CU927936) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.3 1
(CU914652) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.3 1
(CU694213) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.3 1
(CU638828) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.3 1
(CU633829) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.3 1
(CU606920) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.3 1
(CU570852) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.3 1
(AC067872) Homo sapiens chromosome 2 clone -2016D1 map 2, LO... 44 5.3 1
(CU463213) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.3 1
(CU407065) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.3 1
(CT827841) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.3 1
(CT827839) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.3 1
(CR854854) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 5.3 1
(AL391242) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 5.3 1
(AC234614) Monodelphis domestica clone VMRC18-960O14, WORKIN... 44 5.3 1
(AC234612) Monodelphis domestica clone VMRC18-165H4, WORKING... 44 5.3 1
(AC232806) Monodelphis domestica clone VMRC18-952P5, WORKING... 44 5.3 1
(AC230650) Bos taurus clone CH240-502H4, WORKING DRAFT SEQUE... 44 5.3 1
(AC230187) Bos taurus clone CH240-518J5, WORKING DRAFT SEQUE... 44 5.3 1
(AC222372) Bos taurus clone CH240-416I5, WORKING DRAFT SEQUE... 44 5.3 1
(AC221279) Bos taurus clone CH240-402D5, WORKING DRAFT SEQUE... 44 5.3 1
(AC219730) Bos taurus clone CH240-324J8, WORKING DRAFT SEQUE... 44 5.3 1
(AC218752) Bos taurus clone CH240-295J2, WORKING DRAFT SEQUE... 44 5.3 1
(AC196816) Sorghum bicolor clone SB_BBc0002I22, WORKING DRAF... 44 5.3 1
(AC182879) Bos taurus clone CH240-502H23, WORKING DRAFT SEQU... 44 5.3 1
(AC174639) Sorex araneus clone SA_Ba-196C23, WORKING DRAFT S... 44 5.3 1
(AC172904) Bos taurus clone CH240-525C20, WORKING DRAFT SEQU... 44 5.3 1
(AC170474) Bos taurus clone CH240-240H24, WORKING DRAFT SEQU... 44 5.3 1
(AC167148) Bos taurus clone CH240-188M12, WORKING DRAFT SEQU... 44 5.3 1
(AC166683) Bos taurus clone CH240-179E2, WORKING DRAFT SEQUE... 44 5.3 1
(AC165792) Bos taurus clone CH240-156J18, *** SEQUENCING IN ... 44 5.3 1
(AC022958) Homo sapiens chromosome 2 clone RP11-204H17 map 2... 44 5.3 1
(AC020286) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 5.3 1
(AC013785) Homo sapiens chromosome 4 clone RP11-469O22 map 4... 44 5.3 1
(AC006281) Plasmodium falciparum chromosome 12 clone PFYACB8... 44 5.3 1
(AC005140) Plasmodium falciparum chromosome 12 clone PFYACB8... 44 5.3 1
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI... 44 5.3 1
(BH532624) BOGHE88TR BOGH Brassica oleracea genomic clone BO... 44 5.3 1
(BH307673) CH230-129I3.TV CHORI-230 Segment 1 Rattus norvegi... 44 5.3 1
(FH738993) CHO_OF5008xc12f1.ab1 CHO_OF5 Nicotiana tabacum ge... 44 5.3 1
(EK587922) 1095522262082 Global-Ocean-Sampling_GS-32-01-01-1... 44 5.3 1
(EJ456160) 1093017482126 Global-Ocean-Sampling_GS-28-01-01-1... 44 5.3 1
(EI889235) CAH1-59I11TV CAA1Ba Cicer arietinum genomic clone... 44 5.3 1
(EI785974) CHORI518010F10TR BAC library from the breast cell... 44 5.3 1
(EI472208) PV_GBa0081A12.f PV_GBa Phaseolus vulgaris genomic... 44 5.3 1
(ED768229) GM_WBb0142B11.r GM_WBb Glycine max genomic clone ... 44 5.3 1
(DU379385) 1098312124992 CHORI-243 Ovis aries genomic clone ... 44 5.3 1
(AL183563) Tetraodon nigroviridis genome survey sequence T7 ... 44 5.3 1
(DE446730) Bombyx mori genomic DNA, Fosmid clone:GBMFno37_k0... 44 5.3 1
(DE415883) Bombyx mori genomic DNA, BAC clone:16D3E. 44 5.3 1
(DE415544) Bombyx mori genomic DNA, BAC clone:15I7F. 44 5.3 1
(DE395442) Bombyx mori genomic DNA, BAC clone:16L3H. 44 5.3 1
(DE176397) Bombyx mori genomic DNA, Fosmid clone:RO0327-K06_R. 44 5.3 1
(CU197764) Equus caballus GSS, BAC clone CH241-323N16, T7 en... 44 5.3 1
(CT224934) Sus scrofa genomic clone CH242-238J12, genomic su... 44 5.3 1
(CR808551) GR0AAA31BD03RM1 INRA BAC Bos taurus genomic clone... 44 5.3 1
(CC578446) CH240_457O6.T7 CHORI-240 Bos taurus genomic clone... 44 5.3 1
(BH568542) BOHNF35TR BOHN Brassica oleracea genomic clone BO... 44 5.3 1
(EH248436) JGI_ACAC12889.rev ACAC Phakopsora pachyrhizi TW72... 44 5.3 1
(EG694035) RCSB904TP Castor bean cDNA library from seeds (12... 44 5.3 1
(EC434277) 163989681 Sea Urchin Testis cDNA library Strongyl... 44 5.3 1
(EC095765) AAE00001588 Acetabularia acetabulum Non-normalize... 44 5.3 1
(DW900894) MSAM124698_3560_3678 LCM-dissected maize shoot ap... 44 5.3 1
(DN343207) LIB3550-029-P1-K1-D3 LIB3550 Canis lupus familiar... 44 5.3 1
(DB778600) Apis mellifera head cDNA, RIKEN full-length enric... 44 5.3 1
(DB758843) Apis mellifera head cDNA, RIKEN full-length enric... 44 5.3 1
(DA805554) Homo sapiens cDNA clone OCBBF3020636, 5' end, mRN... 44 5.3 1
(CN163338) 952832 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence. 44 5.3 1
(CN161958) 951296 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence. 44 5.3 1
(AJ679637) Sus scrofa EST, clone C0001779_L15. 44 5.3 1
(BX548458) Glossina morsitans morsitans (Tseatse fly) EST fr... 44 5.3 1
(BP513808) Hydra magnipapillata cDNA, clone:hmp_10022. 44 5.3 1
(BM273463) PfESToaa51b07.y1 Plasmodium falciparum 3D7 gameto... 44 5.3 1
(BF299169) 063PbA11 Pb cDNA #20, Charles Yowell and Jane Car... 44 5.3 1
(GR158387) CBPF6547.g1 CBPF Mimulus guttatus IM62 roots, see... 44 5.3 1
(GR143489) CCBX22487.g1 CCBX Mimulus guttatus IM62 floral bu... 44 5.3 1
(GO302202) AHPZ757.fwd AHPZ Teleopsis dalmanni Late larval e... 44 5.3 1
(GO302201) AHPZ757.rev AHPZ Teleopsis dalmanni Late larval e... 44 5.3 1
(FM960917) Glossina morsitans morsitans EST, clone GMsg18e04... 44 5.3 1
(FG291968) 1108383360231 New World Screwworm Larvae 9387 EST... 44 5.3 1
(FG291314) 1108793338924 New World Screwworm Egg 9261 ESTs C... 44 5.3 1
(FG287905) 1108793257010 New World Screwworm Egg 9261 ESTs C... 44 5.3 1
(FG287011) 1108770728126 New World Screwworm Egg 9261 ESTs C... 44 5.3 1
(FG284935) 1108770687631 New World Screwworm Egg 9261 ESTs C... 44 5.3 1
(FG284257) 1108770663787 New World Screwworm Egg 9261 ESTs C... 44 5.3 1
(FE788413) CCAG16089.g1 CCAG Petrolisthes cinctipes heart, g... 44 5.3 1
(FE780287) CCAG11419.g1 CCAG Petrolisthes cinctipes heart, g... 44 5.3 1
(FE475099) CAOS5284.fwd CAOS Selaginella moellendorffii mixe... 44 5.3 1
(AX458578) Sequence 124 from Patent WO0246454. 38 6.0 4
(EB219526) PEG002-C-012925-301 Normalized Pedal-Pleural Gang... 36 6.2 2
(DJ051139) HIGH EFFICIENCY GENE TRANSFER AND EXPRESSION IN M... 32 6.3 3
(DI107068) HIGH EFFICIENCY GENE TRANSFER AND EXPRESSION IN M... 32 6.3 3
(CS083997) Sequence 180 from Patent WO2005040377. 32 6.3 3
(GM713466) Sequence 180 from Patent EP1959011. 32 6.3 3
(EB229667) PEG003-C-203916-501 Normalized Pedal-Pleural Gang... 36 6.4 2
(AC235330) Glycine max strain Williams 82 clone GM_WBb0082G1... 38 6.5 3
(AC110321) Rattus norvegicus clone CH230-272M10, *** SEQUENC... 36 6.6 6
(EB229784) PEG003-C-203375-501 Normalized Pedal-Pleural Gang... 36 6.6 2
(CR448588) Xenopus tropicalis EST, clone TTbA009b23 3'. 34 6.7 2
(AC129313) Mus musculus BAC clone RP23-342K4 from chromosome... 38 6.7 2
(CT573065) Zebrafish DNA sequence from clone CH211-156M19 in... 40 7.0 3
(FI279337) CMHD-GT_506G9-5S GTL_R1_UPA Mus musculus genomic ... 40 7.1 2
(AC069359) Homo sapiens chromosome 8, clone CTD-2003P13, com... 32 7.1 5
(AC177190) Strongylocentrotus purpuratus clone R3-4018H3, WO... 42 7.2 2
(DC543802) Bombyx mori cDNA, clone:E_FL_dpe-_23B23_F_0, 5' e... 36 7.2 2
(GO295446) CAZC2980.fwd CAZC Teleopsis dalmanni Mid-pupal ey... 34 7.2 2
(AC177192) Strongylocentrotus purpuratus clone R3-4018K1, WO... 42 7.2 2
(EY304388) CAWX17626.rev CAWX Helobdella robusta Primary Ear... 40 7.3 2
(CP000685) Flavobacterium johnsoniae UW101, complete genome. 32 7.3 2
(AC093364) Mus musculus clone RP23-60O8, WORKING DRAFT SEQUE... 40 7.4 3
(CR855362) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 34 7.4 5
(BY716186) Mus musculus adult male testis cDNA, RIKEN full-l... 36 7.4 2
(AC157935) Mus musculus chromosome 5, clone RP24-228K8, comp... 36 7.5 4
(AG488146) Mus musculus molossinus DNA, clone:MSMg01-384M16.... 40 7.6 2
(AC124921) Rattus norvegicus clone CH230-214L24, *** SEQUENC... 34 8.0 4
(AC130771) Rattus norvegicus clone CH230-9K7, WORKING DRAFT ... 40 8.1 4
(CU468905) Zebrafish DNA sequence from clone DKEY-178O16 in ... 34 8.2 5
(AC233521) Solanum tuberosum chromosome 1 clone RH165C24, co... 38 8.4 5
(BH678662) BOHTT94TR BO_2_3_KB Brassica oleracea genomic clo... 38 8.5 2
(U04662) Lymantria dispar clone Ld10 chorion protein mRNA, c... 34 8.7 2
(AC107254) Rattus norvegicus clone CH230-74B18, *** SEQUENCI... 36 8.8 4
(AC128114) Rattus norvegicus clone CH230-413M22, WORKING DRA... 38 8.8 4
(AC182158) Bos taurus clone CH240-513H6, WORKING DRAFT SEQUE... 36 8.9 5
(CU468978) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 9.2 4
(AC123109) Rattus norvegicus clone CH230-200D15, *** SEQUENC... 30 9.2 2
(AC007742) Homo sapiens BAC clone RP11-357E16 from Y, comple... 32 9.4 2
(AC173239) Bos taurus clone CH240-523L22, WORKING DRAFT SEQU... 34 9.5 6
(AC146882) Otolemur garnettii clone CH256-64O12, WORKING DRA... 32 9.5 2
(AC167451) Bos taurus clone CH240-197J13, WORKING DRAFT SEQU... 32 9.5 2
(AC022848) Homo sapiens clone RP11-268J14, WORKING DRAFT SEQ... 32 9.6 2
(AC024183) Homo sapiens BAC clone RP11-268K13 from Y, comple... 32 9.6 2
(AB265388) Descoreba simplex gene for 16S rRNA, partial sequ... 36 9.6 2
(CU463283) Zebrafish DNA sequence from clone CH211-226M13. 30 9.7 2
(AC006279) Plasmodium falciparum chromosome 12 clone PFYAC61... 36 9.9 6
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co... 32 10.0 2

>(AU270600) Dictyostelium discoideum vegetative cDNA clone:VSJ866,
5' end single read.
Length = 437

Score = 698 bits (352), Expect(2) = 0.0
Identities = 352/352 (100%)
Strand = Plus / Plus


Query: 6 caacattatatataaaatgtcattctttagaaatttaacacaaaaaatcagtcaatcatt 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caacattatatataaaatgtcattctttagaaatttaacacaaaaaatcagtcaatcatt 60


Query: 66 aaaatcaccagcaccagcagttagattttcagcaccaccaagcaatgcttttaatgttag 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaaatcaccagcaccagcagttagattttcagcaccaccaagcaatgcttttaatgttag 120


Query: 126 accagttgaaccagcagaagaaatgattaataaagttagaccagttgaaattgaaggttc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 accagttgaaccagcagaagaaatgattaataaagttagaccagttgaaattgaaggttc 180


Query: 186 aagtgttggttgtgatggtggtaatggtccattaggacatccaatggtttatattaatct 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagtgttggttgtgatggtggtaatggtccattaggacatccaatggtttatattaatct 240


Query: 246 tgatggtaaagaacctcaaccatgtggttattgtggtcttagattcgtccaaaaacatgg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgatggtaaagaacctcaaccatgtggttattgtggtcttagattcgtccaaaaacatgg 300


Query: 306 tcaccaccaccattaaataatatatatacatacataatatttataattaatc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcaccaccaccattaaataatatatatacatacataatatttataattaatc 352

Score = 75.8 bits (38), Expect(2) = 0.0
Identities = 38/38 (100%)
Strand = Plus / Plus


Query: 393 ttttaaagaacaataaagtatcgataattattcctaat 430
||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttttaaagaacaataaagtatcgataattattcctaat 425

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 622,898,256
Number of extensions: 42866534
Number of successful extensions: 4424443
Number of sequences better than 10.0: 359
Length of query: 510
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 487
Effective length of database: 102,190,702,835
Effective search space: 49766872280645
Effective search space used: 49766872280645
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.31
Homology vs Protein
Query= Contig-U05100-1 (Contig-U05100-1Q) /CSM_Contig/Contig-U05100-1Q.Seq.d
(510 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AE014134_922(AE014134|pid:none) Drosophila melanogaster chromoso... 67 3e-10
AK340083_1(AK340083|pid:none) Acyrthosiphon pisum ACYPI000747 mR... 64 2e-09
EF145992_1(EF145992|pid:none) Populus trichocarpa clone WS0114_M... 64 3e-09
EF082303_1(EF082303|pid:none) Picea sitchensis clone WS02725_C03... 62 8e-09
CU633900_525(CU633900|pid:none) Podospora anserina genomic DNA c... 61 2e-08
(Q5AUI1) RecName: Full=Lactobacillus shifted protein; 61 2e-08
AK059272_1(AK059272|pid:none) Oryza sativa Japonica Group cDNA c... 60 4e-08
DQ214674_1(DQ214674|pid:none) Taeniopygia guttata clone 0058P003... 57 2e-07
FN392320_1081(FN392320|pid:none) Pichia pastoris GS115 chromosom... 57 2e-07
DQ440180_1(DQ440180|pid:none) Aedes aegypti clone AET-14943 NADH... 56 5e-07
EU969726_1(EU969726|pid:none) Zea mays clone 334731 mitochondria... 56 6e-07
(P52503) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulf... 56 6e-07
(O75380) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulf... 55 8e-07
BT049428_1(BT049428|pid:none) Salmo salar clone ssal-evd-542-138... 55 8e-07
BT074247_1(BT074247|pid:none) Oncorhynchus mykiss clone omyk-evo... 55 8e-07
BT079895_1(BT079895|pid:none) Esox lucius clone eluc-evq-519-315... 55 1e-06
BT046251_1(BT046251|pid:none) Salmo salar clone ssal-evd-501-270... 55 1e-06
(P23934) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulf... 55 1e-06
BT063437_1(BT063437|pid:none) Zea mays full-length cDNA clone ZM... 55 1e-06
EU976376_1(EU976376|pid:none) Zea mays clone 881866 mitochondria... 55 1e-06
(Q4R5X8) RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulf... 54 2e-06
BX571830_4(BX571830|pid:none) Zebrafish DNA sequence from clone ... 54 2e-06
BC081528_1(BC081528|pid:none) Danio rerio NADH dehydrogenase (ub... 54 2e-06
BT073153_1(BT073153|pid:none) Oncorhynchus mykiss clone omyk-evn... 54 2e-06
CP000613_3180(CP000613|pid:none) Rhodospirillum centenum SW, com... 52 9e-06
(Q19724) RecName: Full=Probable NADH dehydrogenase [ubiquinone] ... 50 2e-05
FM992689_778(FM992689|pid:none) Candida dubliniensis CD36 chromo... 50 4e-05
CP000498_433(CP000498|pid:none) Pichia stipitis CBS 6054 chromos... 48 2e-04
CP000697_1484(CP000697|pid:none) Acidiphilium cryptum JF-5, comp... 47 3e-04
CR382134_494(CR382134|pid:none) Debaryomyces hansenii strain CBS... 46 5e-04
CU459003_2293(CU459003|pid:none) Magnetospirillum gryphiswaldens... 45 0.001
CP000394_1964(CP000394|pid:none) Granulibacter bethesdensis CGDN... 45 0.001
CP000143_2643(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 c... 42 0.012
CP000661_199(CP000661|pid:none) Rhodobacter sphaeroides ATCC 170... 41 0.015
AE005673_188(AE005673|pid:none) Caulobacter crescentus CB15, com... 41 0.020
CP000377_2760(CP000377|pid:none) Silicibacter sp. TM1040, comple... 40 0.034
CP000158_1847(CP000158|pid:none) Hyphomonas neptunium ATCC 15444... 40 0.034
CP000577_2670(CP000577|pid:none) Rhodobacter sphaeroides ATCC 17... 40 0.044
BC103241_1(BC103241|pid:none) Bos taurus NADH dehydrogenase (ubi... 39 0.075
CP000927_4172(CP000927|pid:none) Caulobacter sp. K31, complete g... 39 0.098
CP000031_3761(CP000031|pid:none) Ruegeria pomeroyi DSS-3, comple... 39 0.098
CP000157_2336(CP000157|pid:none) Erythrobacter litoralis HTCC259... 38 0.13
CP000830_2896(CP000830|pid:none) Dinoroseobacter shibae DFL 12, ... 38 0.13
CP001325_151(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 37 0.37
AM889285_3538(AM889285|pid:none) Gluconacetobacter diazotrophicu... 36 0.48
AE006914_1362(AE006914|pid:none) Rickettsia conorii str. Malish ... 36 0.63
CP000583_255(CP000583|pid:none) Ostreococcus lucimarinus CCE9901... 35 1.1
CP000915_1284(CP000915|pid:none) Francisella tularensis subsp. m... 34 1.8
AP007255_4212(AP007255|pid:none) Magnetospirillum magneticum AMB... 34 2.4
CP000053_1388(CP000053|pid:none) Rickettsia felis URRWXCal2, com... 33 3.1
CP000087_1386(CP000087|pid:none) Rickettsia bellii RML369-C, com... 33 4.1
EU952585_1(EU952585|pid:none) Zea mays clone 1283826 cytochrome ... 33 4.1
AY966947_1(AY966947|pid:none) Synthetic construct isolate FTT026... 33 4.1
AJ749949_264(AJ749949|pid:none) Francisella tularensis subsp. tu... 33 4.1
CP000356_2301(CP000356|pid:none) Sphingopyxis alaskensis RB2256,... 33 4.1
CP000838_25(CP000838|pid:none) Acaryochloris marina MBIC11017 pl... 33 5.4
CP000628_1648(CP000628|pid:none) Agrobacterium radiobacter K84 c... 33 5.4
CP000847_1248(CP000847|pid:none) Rickettsia akari str. Hartford,... 33 5.4
AM236080_2212(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 32 7.0
CP001196_1494(CP001196|pid:none) Oligotropha carboxidovorans OM5... 32 9.1
AL591688_1486(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 32 9.1
CP000738_1102(CP000738|pid:none) Sinorhizobium medicae WSM419, c... 32 9.1
CP001146_811(CP001146|pid:none) Dictyoglomus thermophilum H-6-12... 32 9.1
CP000781_3202(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 32 9.1
CP000237_451(CP000237|pid:none) Neorickettsia sennetsu strain Mi... 32 9.1
CP001251_917(CP001251|pid:none) Dictyoglomus turgidum DSM 6724, ... 32 9.1

>AE014134_922(AE014134|pid:none) Drosophila melanogaster chromosome
2L, complete sequence. &BT011535_1(BT011535|pid:none)
&FJ632118_1(FJ632118|pid:none)
&FJ636768_1(FJ636768|pid:none)
Length = 126

Score = 67.0 bits (162), Expect = 3e-10
Identities = 31/52 (59%), Positives = 36/52 (69%)
Frame = +1

Query: 145 EMINKVRPVEIEGSSVGCDGGNGPLGHPMVYINLDGKEPQPCGYCGLRFVQK 300
++I +V P E V CDGG+GPLGHP VYINLD CGYCGLRFV+K
Sbjct: 70 KLIEEVPPKECTERVVFCDGGDGPLGHPKVYINLDKPGNHICGYCGLRFVKK 121

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 537,710,511
Number of extensions: 8531114
Number of successful extensions: 32288
Number of sequences better than 10.0: 66
Number of HSP's gapped: 31290
Number of HSP's successfully gapped: 66
Length of query: 170
Length of database: 1,061,185,681
Length adjustment: 119
Effective length of query: 51
Effective length of database: 672,240,369
Effective search space: 34284258819
Effective search space used: 34284258819
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.74 gvh: 0.50 alm: 0.56 top: 0.53 tms: 0.00 mit: 0.54 mip: 0.08
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

84.0 %: mitochondrial
8.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: cytoplasmic

>> prediction for Contig-U05100-1 is mit

VS (DIR, S) 3
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0