NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05090-1
Contig ID Contig-U05090-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U05090-1 (Contig-U05090-1Q) /CSM_Contig/Contig-U05090-1Q.Seq.d
AAAAAATAAAAAATAAACGAAAAAAAAAAAAATAAATATGAGCGATACTG
AATTCGAAGAAAATGAAACAAATATTGACGAAACAGAGGAAGATTATAAT
GAAGATGATGAAAATTTAATGTCCGACCATAAAGAATTTTTATTATTAAA
TGATCCCACAAAATATGTATATATGAGAAGAGTTGTACAAAGACCTTATG
CAAAGAAAAATGAAATTTACTTATCAAATAATGGCAAATTTTTATATTAT
GTAAAAAGAGCAAAAAATTTATTATTTAATCAAAGGGAAAAAGAAATTAT
AATTCATGGATTAGGTGCAGCAATTTCATTAGCAGTTGAATTATCATTAT
ATTTACAAAAAGATATTGAAGGATTAACATTATCAACAACAACATCATCA
GAAGAAATCATTGATCAATATGATCCACTCGTTAATGATTTAGAACCAGT
TTTAAAAATTAGACATGCATCAGCTATTCATATTAAAATTATTAATGACG
GTTCTTCAACAAATCCAAATACAACAAACTCTACAACTACTACTACCACT
ACAACTTTAACTCCAATCAATTTTAGAACAACTAGCAAGAAATCAAATTC
ACAATCAAAAGAAAATAAGAAAATAAAAAATTATTAAAGAGACAAGAATT
AGATAAAAAAGTTGAACAAGCTAAATCACAACAAAAACAACAAAGAGAAC
AACAACAATTAAAAGTTCAAGAAACATGTTAAAATAAAAATAA
Gap no gap
Contig length 743
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 2
Number of EST 2
Link to clone list U05090
List of clone(s) 

est1=SSF189E,1,744
est2=SSJ664F,2,576
Translated Amino Acid sequence 
knkk*TKKKKINMSDTEFEENETNIDETEEDYNEDDENLMSDHKEFLLLNDPTKYVYMRR
VVQRPYAKKNEIYLSNNGKFLYYVKRAKNLLFNQREKEIIIHGLGAAISLAVELSLYLQK
DIEGLTLSTTTSSEEIIDQYDPLVNDLEPVLKIRHASAIHIKIINDGSSTNPNTTNSTTT
TTTTTLTPINFRTTSKKSNSQSKENKKIKNY*rdkn*ikklnklnhnknnkennnn*kfk
khvkiki
Translated Amino Acid sequence (All Frames) 
Frame A:
kk*kinekkknkyery*irrk*nky*rnrgrl**r**kfnvrp*rifiik*shkiciyek
sctktlckek*nllik*wqifilckkskkfii*skgkrnynswircsnfiss*iiiiftk
ry*riniinnniirrnh*si*str**frtsfkn*tcisysy*ny**rffnkskynklyny
yyhynfnsnqf*nn*qeikftikrk*enkkllkrqeldkkveqaksqqkqqreqqqlkvq
etc*nkn


Frame B:
knkk*TKKKKINMSDTEFEENETNIDETEEDYNEDDENLMSDHKEFLLLNDPTKYVYMRR
VVQRPYAKKNEIYLSNNGKFLYYVKRAKNLLFNQREKEIIIHGLGAAISLAVELSLYLQK
DIEGLTLSTTTSSEEIIDQYDPLVNDLEPVLKIRHASAIHIKIINDGSSTNPNTTNSTTT
TTTTTLTPINFRTTSKKSNSQSKENKKIKNY*rdkn*ikklnklnhnknnkennnn*kfk
khvkiki


Frame C:
kiknkrkkkk*i*ailnskkmkqiltkqrkiimkmmki*cptiknfyy*mipqnmyi*ee
lykdlmqrkmkftyqimanfyim*keqkiyylikgkkkl*fmd*vqqfh*qlnyhyiykk
ilkd*hyqqqhhqkkslinmihslmi*nqf*kldmhqlfilkllmtvlqqiqiqqtlqll
lplql*lqsileqlarnqihnqkkirk*kiiketrir*ks*ts*ittkttkrtttikssr
nmlk*k*
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05090-1 (Contig-U05090-1Q)
/CSM_Contig/Contig-U05090-1Q.Seq.d
         (743 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05090-1 (Contig-U05090-1Q) /CSM_Contig/Conti...  1096  0.0
Contig-U11443-1 (Contig-U11443-1Q) /CSM_Contig/Conti...    50  3e-06
Contig-U13001-1 (Contig-U13001-1Q) /CSM_Contig/Conti...    48  1e-05
Contig-U14519-1 (Contig-U14519-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U10782-1 (Contig-U10782-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U08277-1 (Contig-U08277-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U13328-1 (Contig-U13328-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U14683-1 (Contig-U14683-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U13922-1 (Contig-U13922-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U07854-1 (Contig-U07854-1Q) /CSM_Contig/Conti...    34  0.21

>Contig-U05090-1 (Contig-U05090-1Q) /CSM_Contig/Contig-U05090-1Q.Seq.d
          Length = 743

 Score = 1096 bits (553), Expect = 0.0
 Identities = 553/553 (100%)
 Strand = Plus / Plus

                                                                       
Query: 33  taaatatgagcgatactgaattcgaagaaaatgaaacaaatattgacgaaacagaggaag 92
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33  taaatatgagcgatactgaattcgaagaaaatgaaacaaatattgacgaaacagaggaag 92

                                                                       
Query: 93  attataatgaagatgatgaaaatttaatgtccgaccataaagaatttttattattaaatg 152
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  attataatgaagatgatgaaaatttaatgtccgaccataaagaatttttattattaaatg 152

                                                                       
Query: 153 atcccacaaaatatgtatatatgagaagagttgtacaaagaccttatgcaaagaaaaatg 212
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 atcccacaaaatatgtatatatgagaagagttgtacaaagaccttatgcaaagaaaaatg 212

                                                                       
Query: 213 aaatttacttatcaaataatggcaaatttttatattatgtaaaaagagcaaaaaatttat 272
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 aaatttacttatcaaataatggcaaatttttatattatgtaaaaagagcaaaaaatttat 272

                                                                       
Query: 273 tatttaatcaaagggaaaaagaaattataattcatggattaggtgcagcaatttcattag 332
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tatttaatcaaagggaaaaagaaattataattcatggattaggtgcagcaatttcattag 332

                                                                       
Query: 333 cagttgaattatcattatatttacaaaaagatattgaaggattaacattatcaacaacaa 392
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cagttgaattatcattatatttacaaaaagatattgaaggattaacattatcaacaacaa 392

                                                                       
Query: 393 catcatcagaagaaatcattgatcaatatgatccactcgttaatgatttagaaccagttt 452
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 catcatcagaagaaatcattgatcaatatgatccactcgttaatgatttagaaccagttt 452

                                                                       
Query: 453 taaaaattagacatgcatcagctattcatattaaaattattaatgacggttcttcaacaa 512
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 taaaaattagacatgcatcagctattcatattaaaattattaatgacggttcttcaacaa 512

                                                                       
Query: 513 atccaaatacaacaaactctacaactactactaccactacaactttaactccaatcaatt 572
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 atccaaatacaacaaactctacaactactactaccactacaactttaactccaatcaatt 572

                        
Query: 573 ttagaacaactag 585
           |||||||||||||
Sbjct: 573 ttagaacaactag 585


 Score = 34.2 bits (17), Expect = 0.21
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 727 tgttaaaataaaaataa 743
           |||||||||||||||||
Sbjct: 727 tgttaaaataaaaataa 743


>Contig-U11443-1 (Contig-U11443-1Q) /CSM_Contig/Contig-U11443-1Q.Seq.d
          Length = 2083

 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 35/37 (94%), Gaps = 1/37 (2%)
 Strand = Plus / Plus

                                                 
Query: 521  acaacaaact-ctacaactactactaccactacaact 556
            |||||||||| |||||||||| |||||||||||||||
Sbjct: 1057 acaacaaactactacaactacaactaccactacaact 1093


>Contig-U13001-1 (Contig-U13001-1Q) /CSM_Contig/Contig-U13001-1Q.Seq.d
          Length = 1857

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 533  acaactactactaccactacaact 556
            ||||||||||||||||||||||||
Sbjct: 1552 acaactactactaccactacaact 1575


 Score = 32.2 bits (16), Expect = 0.81
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 531  ctacaactactactac 546
            ||||||||||||||||
Sbjct: 1574 ctacaactactactac 1589


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,912
Number of Sequences: 6905
Number of extensions: 26912
Number of successful extensions: 4351
Number of sequences better than 10.0: 474
length of query: 743
length of database: 5,674,871
effective HSP length: 16
effective length of query: 727
effective length of database: 5,564,391
effective search space: 4045312257
effective search space used: 4045312257
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7.11
Homology vs DNA 
Query= Contig-U05090-1 (Contig-U05090-1Q) /CSM_Contig/Contig-U05090-1Q.Seq.d
         (743 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(DQ295794) Dictyostelium discoideum RNase P protein subunit ...   557   0.0    2
(C92748) Dictyostelium discoideum slug cDNA, clone SSF189.        557   0.0    2
(AU074159) Dictyostelium discoideum slug cDNA, clone SSJ664.      335   1e-87  1
(AU072827) Dictyostelium discoideum slug cDNA, clone SSF189.      335   1e-87  1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   0.002  12
(AC176823) Strongylocentrotus purpuratus clone R3-3111H09, W...    48   0.002  4
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    32   0.007  9
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    34   0.015  12
(AJ577068) Equus caballus GSS, BAC clone CH241-101P24, SP6 e...    38   0.064  2
(AC176238) Strongylocentrotus purpuratus clone R3-3061C03, W...    48   0.069  2
(DQ121034) Hucho taimen clone ZA-30 microsatellite sequence.       50   0.13   1
(AC178062) Strongylocentrotus purpuratus clone R3-3056L23, W...    44   0.20   3
(CT027574) Zebrafish DNA sequence from clone DKEY-93K8 in li...    48   0.29   2
(EU139070) Solanum lycopersicum chromosome 9 clone C09HBa010...    42   0.36   3
(AE014188) Plasmodium falciparum 3D7 chromosome 12, complete...    38   0.36   12
(AF151733) Dictyostelium discoideum F-Box A protein (fbxA) g...    48   0.39   2
(BX004843) Zebrafish DNA sequence from clone CH211-165E15 in...    34   0.43   5
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         32   0.48   9
(AL627445) Mouse DNA sequence from clone RP23-81D2 on chromo...    48   0.50   1
(AF151111) Dictyostelium discoideum cheater ChtA (chtA) gene...    48   0.50   1
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    48   0.50   1
(AC032012) Mus musculus chromosome 11 clone RP23-237M14 map ...    48   0.50   1
(AC180150) Strongylocentrotus purpuratus clone R3-4004L15, W...    48   0.50   1
(AC177204) Strongylocentrotus purpuratus clone R3-4019A14, W...    48   0.50   1
(AC177067) Strongylocentrotus purpuratus clone R3-4004I24, W...    48   0.50   1
(AC176991) Strongylocentrotus purpuratus clone R3-36P4, WORK...    48   0.50   1
(AC176303) Strongylocentrotus purpuratus clone R3-3055L7, WO...    48   0.50   1
(EJ108506) 1092343145977 Global-Ocean-Sampling_GS-27-01-01-1...    48   0.50   1
(AV779752) Lotus japonicus cDNA clone:MPDL064d02_f, 3' end.        48   0.50   1
(AU034381) Dictyostelium discoideum slug cDNA, clone SLC785.       48   0.50   1
(CN671511) A0907C02-5 NIA Mouse Embryonic Stem (ES) cell (Li...    48   0.50   1
(C89974) Dictyostelium discoideum slug cDNA, clone SSG717.         48   0.50   1
(BJ371816) Dictyostelium discoideum cDNA clone:ddc1j16, 3' e...    48   0.50   1
(FK886250) EST_crog_evp_909934 crog_evp Caligus rogercressey...    48   0.50   1
(FK886249) EST_crog_evp_899950 crog_evp Caligus rogercressey...    48   0.50   1
(FK881701) EST_crog_evp_897926 crog_evp Caligus rogercressey...    48   0.50   1
(AC201602) Strongylocentrotus purpuratus clone R3-51E1, WORK...    42   0.53   4
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ...    32   0.56   7
(AR555323) Sequence 10454 from patent US 6747137.                  34   0.56   3
(DX984083) CHORI103-1D19.TJ CHORI103 Schistosoma mansoni gen...    36   0.67   2
(AC116919) Dictyostelium discoideum chromosome 2 map complem...    32   0.87   5
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    36   0.95   8
(AC180501) Strongylocentrotus purpuratus clone R3-3099I20, W...    38   0.97   4
(GO297573) CAZC4565.rev CAZC Teleopsis dalmanni Mid-pupal ey...    40   0.97   2
(AC006281) Plasmodium falciparum chromosome 12 clone PFYACB8...    36   1.1    6
(AE014186) Plasmodium falciparum 3D7 chromosome 11, complete...    36   1.1    12
(AC115683) Dictyostelium discoideum chromosome 2 map complem...    36   1.1    5
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    32   1.1    8
(AC179606) Strongylocentrotus purpuratus clone R3-1028P05, W...    38   1.1    4
(EY342381) CAWZ11859.fwd CAWZ Helobdella robusta Primary Lat...    36   1.2    2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    34   1.4    11
(AL023813) Caenorhabditis elegans Fosmid H02K04.                   44   1.4    2
(AY863213) Smittium culisetae mitochondrion, complete genome.      38   1.6    3
(FN364022) Schistosoma mansoni genome sequence supercontig S...    36   1.7    2
(AC168502) Strongylocentrotus purpuratus clone R3-3117D16, W...    38   1.8    5
(CR387989) Zebrafish DNA sequence from clone DKEY-101P2 in l...    36   1.8    6
(AC107364) Danio rerio, clone -10O19, complete sequence.           44   1.9    2
(DQ120969) Hucho taimen clone ZB-23 microsatellite sequence.       46   2.0    1
(AC126611) Mus musculus BAC clone RP23-316N22 from chromosom...    46   2.0    1
(GP403538) Sequence 50270 from patent US 7511127.                  46   2.0    1
(GP116713) Sequence 50270 from patent US 7468248.                  46   2.0    1
(AE014297) Drosophila melanogaster chromosome 3R, complete s...    46   2.0    1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    46   2.0    1
(AC008356) Drosophila melanogaster clone BACR43K14, complete...    46   2.0    1
(AC008317) Drosophila melanogaster clone BACR08N17, complete...    46   2.0    1
(AC123081) Rattus norvegicus clone CH230-7N4, *** SEQUENCING...    46   2.0    1
(AC112549) Rattus norvegicus clone CH230-233N22, *** SEQUENC...    46   2.0    1
(AC111436) Rattus norvegicus clone CH230-171K24, WORKING DRA...    46   2.0    1
(AC106586) Rattus norvegicus clone CH230-205G22, *** SEQUENC...    46   2.0    1
(AC094859) Rattus norvegicus clone CH230-6G18, *** SEQUENCIN...    46   2.0    1
(AC200935) Strongylocentrotus purpuratus clone R3-1024H24, W...    46   2.0    1
(AC179656) Strongylocentrotus purpuratus clone R3-1024H11, W...    46   2.0    1
(AC170692) Bos taurus clone CH240-225N6, WORKING DRAFT SEQUE...    46   2.0    1
(AC014257) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    46   2.0    1
(DH468914) Monosiga ovata DNA, fosmid clone: MOF-012P13, gen...    46   2.0    1
(DH463453) Monosiga ovata DNA, fosmid clone: MOF-003H03, gen...    46   2.0    1
(DN575066) 90166899 Sea Urchin primary mesenchyme cell cDNA ...    46   2.0    1
(BJ413505) Dictyostelium discoideum cDNA clone:ddv16c06, 5' ...    46   2.0    1
(BE522948) M30F1STM Arabidopsis developing seed Arabidopsis ...    46   2.0    1
(FS295654) Cynops pyrrhogaster mRNA, clone: Cp_aI_015_M01, 3...    46   2.0    1
(FM109608) Rattus norvegicus EST, 3'-end sequence, clone etn...    46   2.0    1
(FK881702) EST_crog_evp_904070 crog_evp Caligus rogercressey...    46   2.0    1
(FG296496) 1108793252963 New World Screwworm Larvae 9387 EST...    46   2.0    1
(FG289486) 1108793302230 New World Screwworm Egg 9261 ESTs C...    46   2.0    1
(FG288459) 1108793271734 New World Screwworm Egg 9261 ESTs C...    46   2.0    1
(EY373085) CAXA14367.rev CAXA Helobdella robusta Subtracted ...    46   2.0    1
(EY367385) CAXA11230.rev CAXA Helobdella robusta Subtracted ...    46   2.0    1
(EY343178) CAWZ12346.fwd CAWZ Helobdella robusta Primary Lat...    46   2.0    1
(EX162266) MW_DP0217 Dermatophagoides pteronyssinus cDNA lib...    46   2.0    1
(CP001186) Bacillus cereus G9842, complete genome.                 46   2.0    1
(CP001177) Bacillus cereus AH187, complete genome.                 46   2.0    1
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    46   2.0    1
(CP000227) Bacillus cereus Q1, complete genome.                    46   2.0    1
(CP000001) Bacillus cereus E33L, complete genome.                  46   2.0    1
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    38   2.0    6
(AC178657) Strongylocentrotus purpuratus clone R3-11O5, WORK...    42   2.1    4
(FP326663) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   2.4    6
(AC142088) Danio rerio strain Tue clone CH211-184C15, WORKIN...    44   2.6    2
(AC177366) Strongylocentrotus purpuratus clone R3-52I12, WOR...    36   2.7    6
(FN357360) Schistosoma mansoni genome sequence supercontig S...    36   2.7    10
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    36   3.0    8
(CU929412) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   3.0    5
(AC236235) Glycine max strain Williams 82 clone GM_WBc0237B2...    40   3.1    3
(AC175847) Strongylocentrotus purpuratus clone R3-3038M6, WO...    36   3.2    3
(AC145556) Mus musculus BAC clone RP23-308E7 from chromosome...    42   3.3    2
(CR392024) Zebrafish DNA sequence from clone DKEY-45E15 in l...    44   3.3    2
(AR553667) Sequence 8798 from patent US 6747137.                   34   3.3    2
(CN587177) USDA-FP_130249 Acyrthosiphon pisum, Pea Aphid Acy...    42   3.4    2
(FF323319) 280418454 Pea aphid whole body normalized full le...    42   3.7    2
(AC019189) Homo sapiens chromosome 1 clone RP11-309H21, WORK...    32   3.8    2
(AC232878) Solanum tuberosum chromosome 6 clone RHPOTKEY150M...    32   3.8    2
(AL713866) Human DNA sequence from clone RP11-309H21 on chro...    32   3.8    2
(AL844509) Plasmodium falciparum 3D7 chromosome 13.                34   3.9    9
(EX608818) 255366953 Pea aphid whole body normalized full le...    42   4.0    2
(EY330703) CAWY3674.rev CAWY Helobdella robusta Subtracted E...    42   4.0    2
(FF313423) 279388396 Pea aphid whole body normalized full le...    42   4.2    2
(FF334768) 280456597 Pea aphid whole body normalized full le...    42   4.2    2
(EX612831) 255380896 Pea aphid whole body normalized full le...    42   4.2    2
(ER814763) POTM003TR Solanum tuberosum RHPOTKEY BAC ends Sol...    38   4.2    2
(CT675442) Danio rerio EST, clone ZF_mu_155f01 3'.                 40   4.3    2
(AC202591) Medicago truncatula clone mth2-53n12, WORKING DRA...    42   4.4    6
(EX645060) 256668981 Pea aphid whole body normalized full le...    42   4.4    2
(CX583845) TTE00022493 Amplicon Express - Conjugative Form T...    38   4.5    2
(ED404742) AUAC-aas50a02.b1 Ascaris suum whole genome shotgu...    34   4.6    2
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ...    38   4.7    12
(EH015724) USDA-FP_188296 Lysiphlebus testaceipes adult whol...    32   4.7    3
(FH031506) CHO_OF3252xn03r1.ab1 CHO_OF3 Nicotiana tabacum ge...    42   4.7    2
(AL954136) Zebrafish DNA sequence from clone CH211-220E11.         40   4.7    5
(EY335480) CAWY7050.fwd CAWY Helobdella robusta Subtracted E...    34   4.7    2
(CV491225) AGENCOURT_32338217 NIH_ZGC_15 Danio rerio cDNA cl...    40   4.8    2
(FF572184) TTEC284THB Tetrahymena thermophila conjugation cD...    38   5.0    2
(DU890592) 403675 Tomato HindIII BAC Library Solanum lycoper...    34   5.0    2
(FD713348) CAAA17685.fwd CAAA Petromyzon marinus Petromyzon ...    34   5.1    2
(AU061200) Dictyostelium discoideum slug cDNA, clone SLD526.       40   5.1    2
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    38   5.1    6
(AC099606) Mus musculus chromosome 7, clone RP23-360N6, comp...    36   5.2    4
(DU058548) 90341 Tomato HindIII BAC Library Solanum lycopers...    38   5.2    2
(EJ530738) 1092955223214 Global-Ocean-Sampling_GS-29-01-01-1...    32   5.3    3
(EK411408) 1095505193205 Global-Ocean-Sampling_GS-31-01-01-1...    40   5.5    2
(AP010268) Lotus japonicus genomic DNA, chromosome 1, clone:...    42   5.6    3
(AC181360) Strongylocentrotus purpuratus clone R3-49B02, WOR...    38   5.7    6
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    34   6.1    8
(AR547625) Sequence 2756 from patent US 6747137.                   32   6.1    3
(DY892857) CeleSEQ11876 Cunninghamella elegans pBluescript (...    34   6.3    3
(AC176891) Strongylocentrotus purpuratus clone R3-31J23, WOR...    36   6.5    5
(AC176529) Strongylocentrotus purpuratus clone R3-3075J08, W...    40   7.1    2
(AC178423) Strongylocentrotus purpuratus clone R3-3113J1, WO...    38   7.5    3
(CU695074) Zebrafish DNA sequence from clone CH73-243B8 in l...    44   7.8    1
(CU326366) Zebrafish DNA sequence from clone DKEYP-117G7 in ...    44   7.8    1
(CT737133) Zebrafish DNA sequence from clone DKEYP-100D11 in...    44   7.8    1
(CR931764) Zebrafish DNA sequence from clone DKEY-92I17 in l...    44   7.8    1
(CR925784) Zebrafish DNA sequence from clone DKEYP-104A3 in ...    44   7.8    1
(CR854891) Zebrafish DNA sequence from clone DKEY-52P2.            44   7.8    1
(CR450735) Zebrafish DNA sequence from clone CH211-274B17 in...    44   7.8    1
(CR376772) Zebrafish DNA sequence from clone CH211-244C20 in...    44   7.8    1
(BX897736) Zebrafish DNA sequence from clone CH211-181B15 in...    44   7.8    1
(BX649552) Zebrafish DNA sequence from clone CH211-91I13 in ...    44   7.8    1
(BX539310) Zebrafish DNA sequence from clone DKEY-19C16 in l...    44   7.8    1
(BX511115) Zebrafish DNA sequence from clone CH211-101B18 in...    44   7.8    1
(BX322566) Zebrafish DNA sequence from clone CH211-209B6 in ...    44   7.8    1
(BX248326) Zebrafish DNA sequence from clone DKEY-260N20 in ...    44   7.8    1
(BX248234) Zebrafish DNA sequence from clone DKEY-13E15 in l...    44   7.8    1
(BX005350) Zebrafish DNA sequence from clone DKEY-58C8 in li...    44   7.8    1
(BC079756) Xenopus laevis MGC84791 protein, mRNA (cDNA clone...    44   7.8    1
(AL645795) Zebrafish DNA sequence from clone BUSM1-31B14 in ...    44   7.8    1
(AC158793) Mus musculus chromosome 1, clone RP23-269P13, com...    44   7.8    1
(AC119820) Mus musculus chromosome 1, clone RP23-148M18, com...    44   7.8    1
(U66251) Neocallimastix patriciarum acetylxylan esterase (bn...    44   7.8    1
(CP001574) Micromonas sp. RCC299 chromosome 1, complete sequ...    44   7.8    1
(AP009675) Lotus japonicus genomic DNA, chromosome 2, clone:...    44   7.8    1
(FN359191) Schistosoma mansoni genome sequence supercontig S...    44   7.8    1
(AY077634) Dictyostelium discoideum RNaseL inhibitor-like pr...    44   7.8    1
(AC117080) Dictyostelium discoideum chromosome 2 map complem...    44   7.8    1
(AL162493) Human DNA sequence from clone RP11-120L14 on chro...    44   7.8    1
(AL035705) Human DNA sequence from clone RP4-758N20 on chrom...    44   7.8    1
(AC099789) Homo sapiens chromosome 1 clone RP11-377K22, comp...    44   7.8    1
(AC132031) Rattus norvegicus clone CH230-63H4, *** SEQUENCIN...    44   7.8    1
(AC121401) Rattus norvegicus clone CH230-286C16, WORKING DRA...    44   7.8    1
(AC117835) Rattus norvegicus clone RP31-281P8, *** SEQUENCIN...    44   7.8    1
(AC111306) Rattus norvegicus clone CH230-230F5, WORKING DRAF...    44   7.8    1
(AC109124) Rattus norvegicus clone CH230-141J14, WORKING DRA...    44   7.8    1
(AC106164) Rattus norvegicus clone CH230-97I17, WORKING DRAF...    44   7.8    1
(AC103439) Rattus norvegicus clone CH230-161I2, WORKING DRAF...    44   7.8    1
(AC102997) Rattus norvegicus clone CH230-85B17, *** SEQUENCI...    44   7.8    1
(AC094841) Rattus norvegicus clone CH230-6B4, WORKING DRAFT ...    44   7.8    1
(FP102889) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.8    1
(FJ423037) Salmo salar clone BAC 39E15, *** SEQUENCING IN PR...    44   7.8    1
(FJ423035) Salmo salar clone BAC 152K21, *** SEQUENCING IN P...    44   7.8    1
(CU929069) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.8    1
(BX957320) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.8    1
(BX322580) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   7.8    1
(AP008121) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   7.8    1
(AP007754) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   7.8    1
(AC209250) Zea mays chromosome 8 clone CH201-58N23; ZMMBBc00...    44   7.8    1
(AC202702) Zea mays chromosome 7 clone CH201-316N7; ZMMBBc03...    44   7.8    1
(AC198513) Zea mays chromosome 8 clone CH201-201G14; ZMMBBc0...    44   7.8    1
(AC194475) Zea mays chromosome 4 clone CH201-116H2; ZMMBBc01...    44   7.8    1
(AC184602) Strongylocentrotus purpuratus clone R3-3093C3, WO...    44   7.8    1
(AC184578) Strongylocentrotus purpuratus clone R3-3067D12, W...    44   7.8    1
(AC184556) Strongylocentrotus purpuratus clone R3-7B10, WORK...    44   7.8    1
(AC184312) Strongylocentrotus purpuratus clone R3-3093C24, W...    44   7.8    1
(AC181845) Strongylocentrotus purpuratus clone R3-1022E1, WO...    44   7.8    1
(AC181603) Strongylocentrotus purpuratus clone R3-1108C19, W...    44   7.8    1
(AC181183) Strongylocentrotus purpuratus clone R3-14O6, WORK...    44   7.8    1
(AC180587) Strongylocentrotus purpuratus clone R3-3094G12, W...    44   7.8    1
(AC180572) Strongylocentrotus purpuratus clone R3-3095G8, WO...    44   7.8    1
(AC180316) Strongylocentrotus purpuratus clone R3-3119D07, W...    44   7.8    1
(AC180041) Strongylocentrotus purpuratus clone R3-24A22, WOR...    44   7.8    1
(AC178285) Strongylocentrotus purpuratus clone R3-3094B04, W...    44   7.8    1
(AC177757) Strongylocentrotus purpuratus clone R3-1005N12, W...    44   7.8    1
(AC177708) Strongylocentrotus purpuratus clone R3-1011H16, W...    44   7.8    1
(AC177331) Strongylocentrotus purpuratus clone R3-46K17, WOR...    44   7.8    1
(AC177089) Strongylocentrotus purpuratus clone R3-4012A24, W...    44   7.8    1
(AC176858) Strongylocentrotus purpuratus clone R3-3120P19, W...    44   7.8    1
(AC176766) Strongylocentrotus purpuratus clone R3-30C4, WORK...    44   7.8    1
(AC176761) Strongylocentrotus purpuratus clone R3-3097N7, WO...    44   7.8    1
(AC176717) Strongylocentrotus purpuratus clone R3-3095K14, W...    44   7.8    1
(AC176513) Strongylocentrotus purpuratus clone R3-3073A17, W...    44   7.8    1
(AC176438) Strongylocentrotus purpuratus clone R3-3066N3, WO...    44   7.8    1
(AC176295) Strongylocentrotus purpuratus clone R3-3057L2, WO...    44   7.8    1
(AC176213) Strongylocentrotus purpuratus clone R3-3063M10, W...    44   7.8    1
(AC175958) Strongylocentrotus purpuratus clone R3-3035L09, W...    44   7.8    1
(AC175951) Strongylocentrotus purpuratus clone R3-17D17, WOR...    44   7.8    1
(AC174251) Strongylocentrotus purpuratus clone R3-3059M9, WO...    44   7.8    1
(AC173969) Strongylocentrotus purpuratus clone R3-1011O21, W...    44   7.8    1
(AC168843) Strongylocentrotus purpuratus clone R3-13A7, WORK...    44   7.8    1
(AC168596) Strongylocentrotus purpuratus clone R3-3065C11, W...    44   7.8    1
(AC168542) Strongylocentrotus purpuratus clone R3-3091L20, W...    44   7.8    1
(AC168380) Strongylocentrotus purpuratus clone R3-4013F6, WO...    44   7.8    1
(AC168249) Strongylocentrotus purpuratus clone R3-1001J7, WO...    44   7.8    1
(AZ208436) SP_0151_A1_A09_SP6E Strongylocentrotus purpuratus...    44   7.8    1
(ER443264) 1092963820758 Global-Ocean-Sampling_GS-35-01-01-1...    44   7.8    1
(EK609169) 1092350509957 Global-Ocean-Sampling_GS-33-01-01-1...    44   7.8    1
(EJ770390) 1092966001690 Global-Ocean-Sampling_GS-30-02-01-1...    44   7.8    1
(EJ740252) 1092962012622 Global-Ocean-Sampling_GS-30-02-01-1...    44   7.8    1
(EJ729329) 1092960041389 Global-Ocean-Sampling_GS-30-02-01-1...    44   7.8    1
(EJ727844) 1092959685158 Global-Ocean-Sampling_GS-30-02-01-1...    44   7.8    1
(EJ497049) 1095403581895 Global-Ocean-Sampling_GS-28-01-01-1...    44   7.8    1
(EJ482789) 1095403480497 Global-Ocean-Sampling_GS-28-01-01-1...    44   7.8    1
(EJ127447) 1092343400284 Global-Ocean-Sampling_GS-27-01-01-1...    44   7.8    1
(ED738767) GM_WBb0099D04.r GM_WBb Glycine max genomic clone ...    44   7.8    1
(ED211217) AUAC-aas42b08.g1 Ascaris suum whole genome shotgu...    44   7.8    1
(DX991645) CHORI103-13G24.TV CHORI103 Schistosoma mansoni ge...    44   7.8    1
(DX951116) CHORI105-44H1.TF CHORI105.pEpiFOS5 Trypanosoma cr...    44   7.8    1
(DX499263) Cpl41213 Papaya Genomic DNA BAC Library Carica pa...    44   7.8    1
(DU927857) 352125 Tomato EcoRI BAC Library Solanum lycopersi...    44   7.8    1
(DU914899) 326388 Tomato EcoRI BAC Library Solanum lycopersi...    44   7.8    1
(DU912484) 328939 Tomato EcoRI BAC Library Solanum lycopersi...    44   7.8    1
(DH492858) Monosiga ovata DNA, fosmid clone: MOF-054L22, gen...    44   7.8    1
(CZ538610) SRAA-aad20g01.g1 Strongyloides ratti whole genome...    44   7.8    1
(CZ105752) OM__Ba0115E18.r OM__Ba Oryza minuta genomic clone...    44   7.8    1
(EB344538) CNSN01-F-034755-501 Normalized CNS library (juven...    44   7.8    1
(EB329558) CNSN01-F-109521-501 Normalized CNS library (juven...    44   7.8    1
(EB280325) CNSN01-F-034849-501 Normalized CNS library (juven...    44   7.8    1
(EB248339) PEG003-C-031820-501 Normalized Pedal-Pleural Gang...    44   7.8    1
(DY965073) CLSM15979.b1_E12.ab1 CLS(LMS) lettuce sativa Lact...    44   7.8    1
(DY962054) CLSM12372.b1_G21.ab1 CLS(LMS) lettuce sativa Lact...    44   7.8    1
(DY893387) CeleSEQ12713 Cunninghamella elegans pBluescript (...    44   7.8    1
(DY763347) CPP_new06_O13 Bicyclus anynana wings - CPP Bicycl...    44   7.8    1
(DT756764) EST1190613 Aquilegia cDNA library Aquilegia formo...    44   7.8    1
(DT740606) EST1174455 Aquilegia cDNA library Aquilegia formo...    44   7.8    1
(DT738594) EST1172443 Aquilegia cDNA library Aquilegia formo...    44   7.8    1
(DT737524) EST1171373 Aquilegia cDNA library Aquilegia formo...    44   7.8    1
(DT737042) EST1170891 Aquilegia cDNA library Aquilegia formo...    44   7.8    1
(DT464272) GH_CHX15F17.f GH_CHX Gossypium hirsutum cDNA clon...    44   7.8    1
(DR929860) EST1121399 Aquilegia cDNA library Aquilegia formo...    44   7.8    1
(DR914703) EST1106242 Aquilegia cDNA library Aquilegia formo...    44   7.8    1
(DR456004) CM040B12 Cotton Lambda Zap Express Library Gossyp...    44   7.8    1
(AU060735) Dictyostelium discoideum slug cDNA, clone SLB284.       44   7.8    1
(AU034636) Dictyostelium discoideum slug cDNA, clone SLC669.       44   7.8    1
(CV526997) CS_GIL_07H09_SP6 Blue crab gill, normalized Calli...    44   7.8    1
(BQ409266) GA__Ed0018B01r Gossypium arboreum 7-10 dpa fiber ...    44   7.8    1
(BJ402222) Dictyostelium discoideum cDNA clone:dds20j24, 3' ...    44   7.8    1
(BJ402141) Dictyostelium discoideum cDNA clone:dds20j13, 3' ...    44   7.8    1
(BJ401956) Dictyostelium discoideum cDNA clone:dds19n24, 3' ...    44   7.8    1
(BJ401360) Dictyostelium discoideum cDNA clone:dds23b03, 3' ...    44   7.8    1
(BJ400484) Dictyostelium discoideum cDNA clone:dds13p08, 3' ...    44   7.8    1
(BJ400030) Dictyostelium discoideum cDNA clone:dds8d18, 3' e...    44   7.8    1
(BJ399948) Dictyostelium discoideum cDNA clone:dds8l01, 3' e...    44   7.8    1
(BJ399813) Dictyostelium discoideum cDNA clone:dds7h16, 3' e...    44   7.8    1
(BJ375621) Dictyostelium discoideum cDNA clone:ddc19j09, 3' ...    44   7.8    1
(BJ373508) Dictyostelium discoideum cDNA clone:ddc3k11, 3' e...    44   7.8    1
(FM900448) Brachionus plicatilis EST 5' end, clone sb101P001...    44   7.8    1
(FM250791) Caenorhabditis elegans EST, clone  B03_ce5.trans....    44   7.8    1
(FG291463) 1108793341690 New World Screwworm Egg 9261 ESTs C...    44   7.8    1
(FG290886) 1108793327637 New World Screwworm Egg 9261 ESTs C...    44   7.8    1
(FG288468) 1108793271746 New World Screwworm Egg 9261 ESTs C...    44   7.8    1
(FG286882) 1108770727022 New World Screwworm Egg 9261 ESTs C...    44   7.8    1
(FG285517) 1108770701932 New World Screwworm Egg 9261 ESTs C...    44   7.8    1
(FG284527) 1108770671711 New World Screwworm Egg 9261 ESTs C...    44   7.8    1
(FF415126) gmnbhkic_0016f19.pDNRF2 Gadus morhua head kidney ...    44   7.8    1
(FE421696) CBTX2771.fwd CBTX_Daphnia_pulex_Chosen_One_Librar...    44   7.8    1
(FE388066) CBTO1185.fwd CBTO_Daphnia_pulex_Chosen_One_Librar...    44   7.8    1
(FE388065) CBTO1185.rev CBTO_Daphnia_pulex_Chosen_One_Librar...    44   7.8    1
(FE386527) CBNT4595.fwd CBNT_Daphnia_pulex_Chosen_One_Librar...    44   7.8    1
(FE386526) CBNT4595.rev CBNT_Daphnia_pulex_Chosen_One_Librar...    44   7.8    1
(FE369036) CBNO774.fwd CBNO_Daphnia_pulex_Chosen_One_Library...    44   7.8    1
(FE366477) CBNO4436.fwd CBNO_Daphnia_pulex_Chosen_One_Librar...    44   7.8    1
(FC240345) CAGH13274.fwd CAGH Nematostella vectensis Nemve L...    44   7.8    1
(EY391523) CAXA9316.fwd CAXA Helobdella robusta Subtracted L...    44   7.8    1
(EY372846) CAXA14231.rev CAXA Helobdella robusta Subtracted ...    44   7.8    1
(EY339134) CAWY948.fwd CAWY Helobdella robusta Subtracted Ea...    44   7.8    1
(EY337347) CAWY8262.fwd CAWY Helobdella robusta Subtracted E...    44   7.8    1
(EX820741) CBNA7227.rev CBNA Phycomyces blakesleeanus NRRL15...    44   7.8    1
(ES833024) UFL_325_74 Cotton fiber 0-10 day post anthesis Go...    44   7.8    1
(ES832632) UFL_248_11 Cotton fiber 0-10 day post anthesis Go...    44   7.8    1
(ES817143) UFL_311_83 Cotton fiber 0-10 day post anthesis Go...    44   7.8    1
(ES812550) UFL_157_79 Cotton fiber 0-10 day post anthesis Go...    44   7.8    1
(ES809842) UFL_311_84 Cotton fiber 0-10 day post anthesis Go...    44   7.8    1
(ES803739) UFL_518_85 Cotton fiber 0-10 day post anthesis Go...    44   7.8    1
(ES799163) UFL_606_57 Cotton fiber 0-10 day post anthesis Go...    44   7.8    1
(AJ278969) Ruminococcus flavefaciens cellulosomal scaffoldin...    44   7.8    1
(AE015928) Bacteroides thetaiotaomicron VPI-5482, complete g...    44   7.8    1
(AE015927) Clostridium tetani E88, complete genome.                44   7.8    1
(DV778659) Hw_FAT_29_050803_F01 Bos taurus CF-24-HW fat cDNA...    40   7.8    2
(AC149575) Populus trichocarpa clone Pop1-41G18, complete se...    42   8.0    5
(AC114833) Rattus norvegicus clone CH230-207I1, *** SEQUENCI...    40   8.4    3
(AL844501) Plasmodium falciparum strain 3D7, chromosome 1.         36   8.6    12
(EJ906987) 1093018518303 Global-Ocean-Sampling_GS-30-02-01-1...    34   8.8    2
(CT025875) Zebrafish DNA sequence from clone DKEY-73I4 in li...    38   8.8    2
(AY232267) Dictyostelium discoideum putative protein Roco5 (...    34   8.9    3
(AU037297) Dictyostelium discoideum slug cDNA, clone SSB731.       38   9.3    2
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    36   9.4    8
(CT955989) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   9.6    5
(CR318647) Zebrafish DNA sequence from clone CH211-159M16 in...    42   9.8    3

>(DQ295794) Dictyostelium discoideum RNase P protein subunit DRpp20
           (drpp20) mRNA, complete cds.
          Length = 687

 Score =  557 bits (281), Expect(2) = 0.0
 Identities = 281/281 (100%)
 Strand = Plus / Plus


Query: 305 catggattaggtgcagcaatttcattagcagttgaattatcattatatttacaaaaagat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 catggattaggtgcagcaatttcattagcagttgaattatcattatatttacaaaaagat 327


Query: 365 attgaaggattaacattatcaacaacaacatcatcagaagaaatcattgatcaatatgat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 attgaaggattaacattatcaacaacaacatcatcagaagaaatcattgatcaatatgat 387


Query: 425 ccactcgttaatgatttagaaccagttttaaaaattagacatgcatcagctattcatatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ccactcgttaatgatttagaaccagttttaaaaattagacatgcatcagctattcatatt 447


Query: 485 aaaattattaatgacggttcttcaacaaatccaaatacaacaaactctacaactactact 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aaaattattaatgacggttcttcaacaaatccaaatacaacaaactctacaactactact 507


Query: 545 accactacaactttaactccaatcaattttagaacaactag 585
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 accactacaactttaactccaatcaattttagaacaactag 548

 Score =  333 bits (168), Expect(2) = 0.0
 Identities = 168/168 (100%)
 Strand = Plus / Plus


Query: 38  atgagcgatactgaattcgaagaaaatgaaacaaatattgacgaaacagaggaagattat 97
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgagcgatactgaattcgaagaaaatgaaacaaatattgacgaaacagaggaagattat 60


Query: 98  aatgaagatgatgaaaatttaatgtccgaccataaagaatttttattattaaatgatccc 157
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aatgaagatgatgaaaatttaatgtccgaccataaagaatttttattattaaatgatccc 120


Query: 158 acaaaatatgtatatatgagaagagttgtacaaagaccttatgcaaag 205
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acaaaatatgtatatatgagaagagttgtacaaagaccttatgcaaag 168

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 694,612,944
Number of extensions: 50328529
Number of successful extensions: 5021435
Number of sequences better than 10.0: 327
Length of query: 743
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 719
Effective length of database: 102,084,959,077
Effective search space: 73399085576363
Effective search space used: 73399085576363
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U05090-1 (Contig-U05090-1Q) /CSM_Contig/Contig-U05090-1Q.Seq.d
         (743 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q0II25) RecName: Full=Ribonuclease P protein subunit p20;      ...    55   2e-06
(Q9DCH2) RecName: Full=Ribonuclease P protein subunit p20;      ...    54   4e-06
BC082214_1(BC082214|pid:none) Xenopus laevis MGC99250 protein, m...    54   7e-06
BC083490_1(BC083490|pid:none) Danio rerio processing of precurso...    49   1e-04
AK072498_1(AK072498|pid:none) Oryza sativa Japonica Group cDNA c...    48   3e-04
AC096689_5(AC096689|pid:none) Oryza sativa chromosome 3 BAC OSJN...    47   8e-04
BT036763_1(BT036763|pid:none) Zea mays full-length cDNA clone ZM...    45   0.003
EF678537_1(EF678537|pid:none) Picea sitchensis clone WS02926_I13...    43   0.009
AM432259_2(AM432259|pid:none) Vitis vinifera contig VV78X029495....    43   0.012
EF082788_1(EF082788|pid:none) Picea sitchensis clone WS02726_I21...    42   0.021
AB109206_13(AB109206|pid:none) Oryza sativa Japonica Group genom...    42   0.021
EF086643_1(EF086643|pid:none) Picea sitchensis clone WS02743_J22...    42   0.027
BT065245_1(BT065245|pid:none) Zea mays full-length cDNA clone ZM...    42   0.027
FB837771_1(FB837771|pid:none) Sequence 57044 from Patent WO20080...    41   0.035
FB837799_1(FB837799|pid:none) Sequence 57072 from Patent WO20080...    41   0.035
AM429566_2(AM429566|pid:none) Vitis vinifera contig VV78X135277....    40   0.078
AB236802_1(AB236802|pid:none) Trifolium pratense RNA for hypothe...    40   0.10
AK066507_1(AK066507|pid:none) Oryza sativa Japonica Group cDNA c...    38   0.39
AC147812_18(AC147812|pid:none) Oryza sativa (japonica cultivar-g...    38   0.39
AE014298_3058(AE014298|pid:none) Drosophila melanogaster chromos...    38   0.39
AC022472_2(AC022472|pid:none) Sequence of BAC T20H2 from Arabido...    37   0.50
BT055759_1(BT055759|pid:none) Zea mays full-length cDNA clone ZM...    36   1.1
EF178989_1(EF178989|pid:none) Myriophyllum trachycarpum maturase...    34   4.3
(Q9GF40) RecName: Full=Maturase K; AltName: Full=Intron maturase...    33   9.5

>(Q0II25) RecName: Full=Ribonuclease P protein subunit p20;
           Short=RNaseP protein p20;          EC=3.1.26.5;
           &BC122839_1(BC122839|pid:none)
          Length = 140

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
 Frame = +2

Query: 152 DPTKYVYMRRVVQRPYAKKNEIYLSNNGKFLYYVKRAKNLLFNQRE-----KEIIIHGLG 316
           DP +Y   +R+  R   + N+IY++    F   + R + LL           EI IHGLG
Sbjct: 16  DPVEYTLRKRLPHRLPRRPNDIYVNMKTDFKAQLARCQKLLDGGARGQNACSEIYIHGLG 75

Query: 317 AAISLAVELSLYLQK-DXXXXXXXXXXXXXXXXDQYDPLVNDLEPVLKIRHASAIHIKI 490
            AI+ A+ ++L LQ                   D+ +P  +  EP+ +IR+ SAIHI++
Sbjct: 76  LAINRAINIALQLQAGSFGSLQVAANTSTVELVDELEPETDSREPLTRIRNNSAIHIRV 134

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 580,662,844
Number of extensions: 8607878
Number of successful extensions: 22202
Number of sequences better than 10.0: 24
Number of HSP's gapped: 22094
Number of HSP's successfully gapped: 24
Length of query: 247
Length of database: 1,061,185,681
Length adjustment: 125
Effective length of query: 122
Effective length of database: 652,629,681
Effective search space: 79620821082
Effective search space used: 79620821082
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.43  gvh: 0.19  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.09
 nuc: 0.04  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 48.0 %: nuclear
	  4.0 %: cytoskeletal

>> prediction for Contig-U05090-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0