Contig-U05088-1 |
Contig ID |
Contig-U05088-1 |
Contig update |
2001. 8.29 |
Contig sequence |
|
Gap |
no gap |
Contig length |
663 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
2036829 |
End point |
2037492 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
3 |
Number of EST |
3 |
Link to clone list |
U05088 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2009. 7.11 |
Homology vs DNA |
Query= Contig-U05088-1 (Contig-U05088-1Q) /CSM_Contig/Contig-U05088-1Q.Seq.d (663 letters)
Database: ddbj_B 105,743,758 sequences; 104,622,809,269 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(C92746) Dictyostelium discoideum slug cDNA, clone SSF186. 1289 0.0 1 (AU072825) Dictyostelium discoideum slug cDNA, clone SSF186. 476 e-130 1 (C84742) Dictyostelium discoideum slug cDNA, clone SSF205. 456 e-124 1 (AU268954) Dictyostelium discoideum vegetative cDNA clone:VS... 289 7e-74 1 (CU928051) Brassica rapa subsp. pekinensis clone KBrH059L03,... 46 0.020 5 (ES426361) pm_OSU_shoot_CD_2003-04_015E08 Douglas-fir cold d... 52 0.028 1 (ES420376) pm_OSU_shoot_CA_2003-04_034E07 Douglas-fir cold a... 52 0.028 1 (EJ005937) 1091138298778 Global-Ocean-Sampling_GS-26-01-01-1... 40 0.082 2 (EX007252) HTAB-aac73b12.b1 Heterorhabditis_bacteriophora_HT... 46 0.17 2 (EX916661) HTAB-aae60a08.b1 Heterorhabditis_bacteriophora_HT... 46 0.21 2 (ES412267) HTAB-aaa32f12.b2 Heterorhabditis_bacteriophora_HT... 46 0.23 2 (AC117267) Dictyostelium discoideum chromosome 2 map 5836255... 42 0.28 3 (AL954702) Zebrafish DNA sequence from clone CH211-217A1 in ... 38 0.28 7 (CW354615) fsbb001f017o10f0 Sorghum methylation filtered lib... 48 0.44 1 (CW315592) 104_806_11472445_116_35823_051 Sorghum methylatio... 48 0.44 1 (CW091804) 104_454_10998777_116_33040_047 Sorghum methylatio... 48 0.44 1 (AC135922) Oryza sativa (japonica cultivar-group) chromosome... 44 0.53 4 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 36 0.74 8 (AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI... 34 0.90 10 (AC178545) Strongylocentrotus purpuratus clone R3-3027E21, W... 36 0.92 6 (FF335608) 280460007 Pea aphid whole body normalized full le... 34 1.1 3 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 38 1.1 8 (AK174319) Ciona intestinalis cDNA, clone:cicl036c18, full i... 34 1.2 2 (BW370190) Ciona intestinalis cDNA, clone:cima849i16, 5'end,... 34 1.2 2 (BW195408) Ciona intestinalis cDNA, clone:cicl036c18, 5' end... 34 1.2 2 (BW105784) Ciona intestinalis cDNA, clone:rcicl036c18, 3' en... 34 1.2 2 (BW424666) Ciona intestinalis cDNA, clone:cima849i16, 3'end,... 34 1.2 2 (DX545650) GH_MBb0064G06r GH_MBb Gossypium hirsutum genomic ... 38 1.3 2 (BX927243) Zebrafish DNA sequence from clone DKEY-21E2 in li... 46 1.7 1 (BX546453) Zebrafish DNA sequence from clone CH211-203G10 in... 46 1.7 1 (BX005012) Zebrafish DNA sequence from clone DKEY-11P23 in l... 46 1.7 1 (FM992690) Candida dubliniensis CD36 chromosome 3, complete ... 46 1.7 1 (AC160072) Bos taurus clone CH240-82J12, WORKING DRAFT SEQUE... 46 1.7 1 (AC182292) Bos taurus clone CH240-488C17, WORKING DRAFT SEQU... 46 1.7 1 (ER303118) 1092343721729 Global-Ocean-Sampling_GS-34-01-01-1... 46 1.7 1 (EK165234) 1095458048296 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.7 1 (EK065353) 1092960113855 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.7 1 (EK064908) 1092960110399 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.7 1 (EJ146455) 1092343719112 Global-Ocean-Sampling_GS-27-01-01-1... 46 1.7 1 (AC005140) Plasmodium falciparum chromosome 12 clone PFYACB8... 34 2.5 11 (CR762462) Zebrafish DNA sequence from clone DKEYP-8H3 in li... 34 2.5 5 (CR489354) mth2-159J24FM1 BAC end, cultivar Jemalong A17 of ... 34 2.9 2 (CR481173) mth2-193B5RM1 BAC end, cultivar Jemalong A17 of M... 34 2.9 2 (BX571728) Zebrafish DNA sequence from clone DKEY-210O7 in l... 36 3.1 6 (CR487062) mth2-139P23RM1 BAC end, cultivar Jemalong A17 of ... 34 3.2 2 (AP009392) Solanum lycopersicum genomic DNA, chromosome 8, c... 36 3.6 4 (CU633399) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 3.9 5 (EX528988) MTGland_A048_2007-07-07/MTGlandA048_F04_011_1 Med... 34 3.9 2 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 38 4.0 6 (EJ866093) 1093018279723 Global-Ocean-Sampling_GS-30-02-01-1... 40 4.0 2 (EK201478) 1095460057885 Global-Ocean-Sampling_GS-31-01-01-1... 42 4.2 2 (EJ877735) 1093018379182 Global-Ocean-Sampling_GS-30-02-01-1... 40 4.3 2 (FH663340) CHO_OF5006xm13r1.ab1 CHO_OF5 Nicotiana tabacum ge... 32 4.5 2 (FH383200) CHO_OF4745xc17r1.ab1 CHO_OF4 Nicotiana tabacum ge... 32 4.5 2 (CZ951060) 261790 Tomato EcoRI BAC Library Solanum lycopersi... 34 4.6 2 (AZ681678) ENTHU46TF Entamoeba histolytica Sheared DNA Entam... 32 4.7 3 (AC173959) Glycine max clone gmw1-27d20, WORKING DRAFT SEQUE... 38 5.0 5 (AP007308) Lotus japonicus genomic DNA, chromosome 5, clone:... 38 5.5 2 (CU062645) Zebrafish DNA sequence from clone CH211-176I7 in ... 44 6.9 1 (BX322568) Zebrafish DNA sequence from clone DKEY-38N4 in li... 44 6.9 1 (GF092347) 24047 Glycine max young leaves DNA Glycine max ST... 44 6.9 1 (AC122218) Mus musculus BAC clone RP23-118J7 from chromosome... 44 6.9 1 (CT834409) Oryza sativa (indica cultivar-group) cDNA clone:O... 44 6.9 1 (BT071561) Picea sitchensis clone WS02924_K02 unknown mRNA. 44 6.9 1 (AP008211) Oryza sativa (japonica cultivar-group) genomic DN... 44 6.9 1 (AK073450) Oryza sativa Japonica Group cDNA clone:J033046F02... 44 6.9 1 (AC130726) Oryza sativa (japonica cultivar-group) chromosome... 44 6.9 1 (CQ779397) Sequence 3 from Patent EP1396544. 44 6.9 1 (AL031010) Human DNA sequence from clone RP3-422F24 on chrom... 44 6.9 1 (AC153741) Ornithorhynchus anatinus clone OA_Bb-10N20, WORKI... 44 6.9 1 (AC126589) Rattus norvegicus clone CH230-121A13, WORKING DRA... 44 6.9 1 (CU466541) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.9 1 (CU466503) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 6.9 1 (AC198271) Ornithorhynchus anatinus clone OA_Bb-567M4, WORKI... 44 6.9 1 (FI103450) MUGQ_CH252P483I13Sp6_CH0169_055 CHORI-252 Vervet ... 44 6.9 1 (ET170490) MUGQ_CH252P372E22Sp6_CP700_091 CHORI-252 Vervet M... 44 6.9 1 (EK435233) 1095521028801 Global-Ocean-Sampling_GS-31-01-01-1... 44 6.9 1 (DU094494) 109398 Tomato HindIII BAC Library Solanum lycoper... 44 6.9 1 (CW647243) OA_ABa0186E22.f OA_ABa Oryza australiensis genomi... 44 6.9 1 (CW520405) OP__Ba0023P12.f OP__Ba Oryza punctata genomic clo... 44 6.9 1 (CE414857) tigr-gss-dog-17000362567970 Dog Library Canis lup... 44 6.9 1 (EC294209) BRAINF091457P7 POSSUM_01-POSSUM-C-BRAIN-2KB Trich... 44 6.9 1 (DR594903) WS00842.B21_C19 WS-X-N-A-9 Picea glauca cDNA clon... 44 6.9 1 (DR465341) WS00935.B21_E04 IS-B-N-A-10 Picea engelmannii x P... 44 6.9 1 (DR054328) RTCA1_16_D12.g1_A029 Roots minus calcium Pinus ta... 44 6.9 1 (AU072730) Dictyostelium discoideum slug cDNA, clone SSA714. 44 6.9 1 (CX709282) gmrtDrNS01_05-D_M13R_F08_054.s1 Water stressed 5h... 44 6.9 1 (CX708983) gmrtDrNS01_02-D_T3_C10_076.s0 Water stressed gmrt... 44 6.9 1 (CX703850) gmrtDrNS01_21-B_M13R_C07_059.s1 Water stressed 5h... 44 6.9 1 (CV299268) EST887727 petunia floral post-pollination cDNA li... 44 6.9 1 (CO214124) WS00927.B21_A14 IS-B-N-A-10 Picea engelmannii x P... 44 6.9 1 (CO159719) FLD1_15_H09.b1_A029 Root flooded Pinus taeda cDNA... 44 6.9 1 (CK075113) 68222rsicem_10207.y1 Oryza sativa cv. PA64s panic... 44 6.9 1 (CI330840) Oryza sativa Japonica Group cDNA, clone: J01B3122... 44 6.9 1 (CA937019) sav28a07.y1 Gm-c1048 Glycine max cDNA clone SOYBE... 44 6.9 1 (CA799754) sat62c01.y1 Gm-c1056 Glycine soja cDNA clone SOYB... 44 6.9 1 (BX705839) Xenopus tropicalis EST, clone TTpA003o13 3'. 44 6.9 1 (BU084273) sar37d03.y1 Gm-c1049 Glycine max cDNA clone SOYBE... 44 6.9 1 (BQ252504) san76f01.y1 Gm-c1052 Glycine max cDNA clone SOYBE... 44 6.9 1 (BM887019) sam33c02.y1 Gm-c1068 Glycine max cDNA clone SOYBE... 44 6.9 1 (BM520719) sak97g04.y1 Gm-c1057 Glycine soja cDNA clone SOYB... 44 6.9 1 (BM308304) sak44c09.y1 Gm-c1036 Glycine max cDNA clone SOYBE... 44 6.9 1 (BJ397795) Dictyostelium discoideum cDNA clone:dds47k15, 5' ... 44 6.9 1 (BJ397327) Dictyostelium discoideum cDNA clone:dds45l20, 5' ... 44 6.9 1 (BJ376753) Dictyostelium discoideum cDNA clone:ddc29d23, 3' ... 44 6.9 1 (BJ368787) Dictyostelium discoideum cDNA clone:ddc48h01, 5' ... 44 6.9 1 (BJ368370) Dictyostelium discoideum cDNA clone:ddc46m10, 5' ... 44 6.9 1 (BJ367988) Dictyostelium discoideum cDNA clone:ddc44g05, 5' ... 44 6.9 1 (BJ366352) Dictyostelium discoideum cDNA clone:ddc38m15, 5' ... 44 6.9 1 (BJ365838) Dictyostelium discoideum cDNA clone:ddc36d19, 5' ... 44 6.9 1 (BI701382) sag58b08.y1 Gm-c1082 Glycine max cDNA clone GENOM... 44 6.9 1 (BI498723) sai21g08.y1 Gm-c1053 Glycine max cDNA clone GENOM... 44 6.9 1 (BG316232) sab78b05.y1 Gm-c1032 Glycine max cDNA clone GENOM... 44 6.9 1 (BE347060) sp34d09.y1 Gm-c1043 Glycine max cDNA clone GENOME... 44 6.9 1 (FN006760) Petunia axillaris subsp. axillaris EST, clone dr0... 44 6.9 1 (FN006179) Petunia axillaris subsp. axillaris EST, clone dr0... 44 6.9 1 (FM925431) Brachionus plicatilis EST 5' end, clone sb103P002... 44 6.9 1 (FM921981) Brachionus plicatilis EST 5' end, clone sb103P000... 44 6.9 1 (FM900380) Brachionus plicatilis EST 5' end, clone sb101P001... 44 6.9 1 (FK394222) 454GmaGlobSeed128854 Soybean Seeds Containing Glo... 44 6.9 1 (AW761170) sl64b02.y1 Gm-c1027 Glycine max cDNA clone GENOME... 44 6.9 1 (AW756849) sl27h11.y1 Gm-c1027 Glycine max cDNA clone GENOME... 44 6.9 1 (AW508427) si40g04.y1 Gm-r1030 Glycine max cDNA clone GENOME... 44 6.9 1 (EX442388) GQ04105.B7_H13 GQ041 - Shoot tip - Dormant (Norma... 44 6.9 1 (EX375393) GQ03231.B7_B03 GQ032 - Shoot tip (Normalized libr... 44 6.9 1 (EX375029) GQ03231.B7.1_B03 GQ032 - Shoot tip (Normalized li... 44 6.9 1 (EX314035) GQ02806.SP6_G17 GQ028 - Cambium / phloem scrappin... 44 6.9 1 (EX313684) GQ02806.B7_G17 GQ028 - Cambium / phloem scrapping... 44 6.9 1 (EV276953) GLMCY94TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq... 44 6.9 1 (EV274124) GLMC311TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq... 44 6.9 1 (AW200743) se93a05.y1 Gm-c1027 Glycine max cDNA clone GENOME... 44 6.9 1 (CP001080) Sulfurihydrogenibium sp. YO3AOP1, complete genome. 44 6.9 1 (AM942759) Proteus mirabilis strain HI4320, complete genome. 44 6.9 1 (CT030048) Zebrafish DNA sequence from clone DKEY-73J23 in l... 34 7.5 4 (BX957234) Zebrafish DNA sequence from clone CH211-286L10 in... 38 7.6 3 (AL929502) Zebrafish DNA sequence from clone CH211-69G19 in ... 30 7.7 8 (AY160096) Dictyostelium discoideum nucleotide exchange fact... 38 7.7 2 (CP000040) Bacillus cereus E33L plasmid pE33L466, complete s... 36 7.9 8 (AC223157) Bos taurus clone CH240-427L21, WORKING DRAFT SEQU... 38 8.3 2 (AC067972) Homo sapiens chromosome 4 clone RP11-226G19 map 4... 40 8.5 2 (AC212847) Populus trichocarpa clone POP041-B02, complete se... 36 8.6 3 (CR405714) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 9.4 3 (CP000903) Bacillus weihenstephanensis KBAB4, complete genome. 32 9.4 2 (CU074302) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 9.6 5 (BX005377) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 34 9.7 5 (BX005307) Zebrafish DNA sequence from clone DKEY-235F19 in ... 34 9.8 5 (AU270095) Dictyostelium discoideum vegetative cDNA clone:VS... 34 9.9 2
>(C92746) Dictyostelium discoideum slug cDNA, clone SSF186. Length = 664
Score = 1289 bits (650), Expect = 0.0 Identities = 650/650 (100%) Strand = Plus / Plus
Query: 1 gaaatatatgtctacacaatcaccaacttcaacaaataataatattagtaatattgcaaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gaaatatatgtctacacaatcaccaacttcaacaaataataatattagtaatattgcaaa 60
Query: 61 tcaatgtaataaaaggattgcaatggtatgtgcatccaatcaaaatcgtagtttggaagc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tcaatgtaataaaaggattgcaatggtatgtgcatccaatcaaaatcgtagtttggaagc 120
Query: 121 acatcatttatttgtaaagaatggatttaagaatataaggtcatttggtacatcagcaca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 acatcatttatttgtaaagaatggatttaagaatataaggtcatttggtacatcagcaca 180
Query: 181 ttgtaaattaccaggaccatcaattcatcaaccaaatatattttcatttggtacaccata 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ttgtaaattaccaggaccatcaattcatcaaccaaatatattttcatttggtacaccata 240
Query: 241 tcaagagatctatacatcactaaagaatcaagatcaagaactttacattagaaatggttt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 tcaagagatctatacatcactaaagaatcaagatcaagaactttacattagaaatggttt 300
Query: 301 attgaatatgttggaacgtaatatctctgttaaacttgcaccagagaaatggcaagaaga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 attgaatatgttggaacgtaatatctctgttaaacttgcaccagagaaatggcaagaaga 360
Query: 361 acaacaatcaaaatttgaaatcgtctatacatttgatcaacgtgtttacgatgccgtcat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 acaacaatcaaaatttgaaatcgtctatacatttgatcaacgtgtttacgatgccgtcat 420
Query: 421 tgaagatctcttacaaagagatgtatcctcctcactattacaacctgtacatataatcaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 tgaagatctcttacaaagagatgtatcctcctcactattacaacctgtacatataatcaa 480
Query: 481 tttacaagttaaagatactcacgaagaagctgtaggtggtgcacaacatgctttagaaat 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 tttacaagttaaagatactcacgaagaagctgtaggtggtgcacaacatgctttagaaat 540
Query: 541 tacttcaatcattgaaaaaactcttaattgggaagagaaattagatcaaattttagaaga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 tacttcaatcattgaaaaaactcttaattgggaagagaaattagatcaaattttagaaga 600
Query: 601 tttttataaacaaacttcaagacaatttttacatactttaatgttttatt 650 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 tttttataaacaaacttcaagacaatttttacatactttaatgttttatt 650
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 105743758 Number of Hits to DB: 909,135,052 Number of extensions: 55870819 Number of successful extensions: 4717344 Number of sequences better than 10.0: 148 Length of query: 663 Length of database: 104,622,809,269 Length adjustment: 24 Effective length of query: 639 Effective length of database: 102,084,959,077 Effective search space: 65232288850203 Effective search space used: 65232288850203 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.31 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
1 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
2 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |