>Contig-U05085-1 (Contig-U05085-1Q) /CSM_Contig/Contig-U05085-1Q.Seq.d
AATAAATTAAAATCAAAATAACATTTCCAACATAATATATATATAAATAC
AATGAGCGCACCAGATATTTTAAAAGATTTTAAAGGTTCATTAACTATTG
AACAAGATGGATCAATTTCAAGTGCTTCAGGTATTTTACAAGAAAGTTTC
TATAATAATAAAGAATTTGCAAGCACCATTATTTCAATGTTACACGACGT
CAATAAAATTACATCTTCAAATAATCAAGAATTTAAAAGAATGACAGTTT
CATTTTCAGAACAAACATTTATAGTCACAGCAATTGGAACTAAAATTTAT
GTAGTTGTACAATAAATAAAAATAGGAAAAAAAAAAAATTAAAAAAAAAT
TAAAAATTAAAAAAAAA

est1=SSF176E,1,365
est2=VSG830F,5,368

nklksk*HFQHNIYINTMSAPDILKDFKGSLTIEQDGSISSASGILQESFYNNKEFASTI
ISMLHDVNKITSSNNQEFKRMTVSFSEQTFIVTAIGTKIYVVVQ*ikigkkkn*kkikn*
kk

Frame A:
nklksk*HFQHNIYINTMSAPDILKDFKGSLTIEQDGSISSASGILQESFYNNKEFASTI
ISMLHDVNKITSSNNQEFKRMTVSFSEQTFIVTAIGTKIYVVVQ*ikigkkkn*kkikn*
kk


Frame B:
in*nqnnisniiyi*iq*ahqif*kilkvh*llnkmdqfqvlqvfykkvsiiiknlqapl
fqcyttsiklhlqiiknlke*qfhfqnkhl*sqqlelkfm*lynk*k*ekkkikkklkik
kk


Frame C:
*ikikitfpt*yiykynertryfkrf*rfiny*trwinfkcfryftrkfl***rickhhy
fnvtrrq*nyifk*sri*kndsfifrtniyshsnwn*nlcsctinknrkkkklkkn*klk
k

Query= Contig-U05085-1 (Contig-U05085-1Q)
/CSM_Contig/Contig-U05085-1Q.Seq.d
         (367 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05085-1 (Contig-U05085-1Q) /CSM_Contig/Conti...   646  0.0
Contig-U03173-1 (Contig-U03173-1Q) /CSM_Contig/Conti...    44  1e-04
Contig-U14463-1 (Contig-U14463-1Q) /CSM_Contig/Conti...    38  0.006
Contig-U12210-1 (Contig-U12210-1Q) /CSM_Contig/Conti...    36  0.025
Contig-U11967-1 (Contig-U11967-1Q) /CSM_Contig/Conti...    36  0.025
Contig-U11886-1 (Contig-U11886-1Q) /CSM_Contig/Conti...    36  0.025
Contig-U11306-1 (Contig-U11306-1Q) /CSM_Contig/Conti...    36  0.025
Contig-U11054-1 (Contig-U11054-1Q) /CSM_Contig/Conti...    36  0.025
Contig-U09724-1 (Contig-U09724-1Q) /CSM_Contig/Conti...    36  0.025
Contig-U09053-1 (Contig-U09053-1Q) /CSM_Contig/Conti...    36  0.025

>Contig-U05085-1 (Contig-U05085-1Q) /CSM_Contig/Contig-U05085-1Q.Seq.d
          Length = 367

 Score =  646 bits (326), Expect = 0.0
 Identities = 326/326 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataaattaaaatcaaaataacatttccaacataatatatatataaatacaatgagcgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aataaattaaaatcaaaataacatttccaacataatatatatataaatacaatgagcgca 60

                                                                       
Query: 61  ccagatattttaaaagattttaaaggttcattaactattgaacaagatggatcaatttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ccagatattttaaaagattttaaaggttcattaactattgaacaagatggatcaatttca 120

                                                                       
Query: 121 agtgcttcaggtattttacaagaaagtttctataataataaagaatttgcaagcaccatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agtgcttcaggtattttacaagaaagtttctataataataaagaatttgcaagcaccatt 180

                                                                       
Query: 181 atttcaatgttacacgacgtcaataaaattacatcttcaaataatcaagaatttaaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atttcaatgttacacgacgtcaataaaattacatcttcaaataatcaagaatttaaaaga 240

                                                                       
Query: 241 atgacagtttcattttcagaacaaacatttatagtcacagcaattggaactaaaatttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgacagtttcattttcagaacaaacatttatagtcacagcaattggaactaaaatttat 300

                                     
Query: 301 gtagttgtacaataaataaaaatagg 326
           ||||||||||||||||||||||||||
Sbjct: 301 gtagttgtacaataaataaaaatagg 326


>Contig-U03173-1 (Contig-U03173-1Q) /CSM_Contig/Contig-U03173-1Q.Seq.d
          Length = 615

 Score = 44.1 bits (22), Expect = 1e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 200 tcaataaaattacatcttcaaa 221
           ||||||||||||||||||||||
Sbjct: 303 tcaataaaattacatcttcaaa 324


>Contig-U14463-1 (Contig-U14463-1Q) /CSM_Contig/Contig-U14463-1Q.Seq.d
          Length = 1271

 Score = 38.2 bits (19), Expect = 0.006
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 33  taatatatatataaatacaatga 55
           |||| ||||||||||||||||||
Sbjct: 516 taatttatatataaatacaatga 494


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,736
Number of Sequences: 6905
Number of extensions: 13736
Number of successful extensions: 1517
Number of sequences better than 10.0: 589
length of query: 367
length of database: 5,674,871
effective HSP length: 16
effective length of query: 351
effective length of database: 5,564,391
effective search space: 1953101241
effective search space used: 1953101241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)

Query= Contig-U05085-1 (Contig-U05085-1Q) /CSM_Contig/Contig-U05085-1Q.Seq.d
         (367 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU266846) Dictyostelium discoideum vegetative cDNA clone:VS...   613   e-171  1
(C92738) Dictyostelium discoideum slug cDNA, clone SSF176.        553   e-153  1
(AU072821) Dictyostelium discoideum slug cDNA, clone SSF176.      476   e-130  1
(DW259662) UI-S-GG1-abb-o-23-0-UI.s1 UI-S-GG1 Euprymna scolo...    44   0.003  2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    34   0.019  6
(CU570728) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.033  4
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    36   0.034  9
(FG321702) gmnlem_0005a14.sp6 Gadus morhua embryo library Ga...    36   0.037  3
(AL844509) Plasmodium falciparum 3D7 chromosome 13.                36   0.041  6
(AC073947) Mus musculus strain C57BL/6J chromosome 9 clone r...    40   0.046  5
(DW268521) UI-S-GN1-abz-b-21-0-UI.s1 UI-S-GN1 Euprymna scolo...    40   0.048  2
(AC161864) Medicago truncatula clone mth2-69d21, complete se...    50   0.060  1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    36   0.075  7
(FH516541) CHO_OF4809xf09f1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   0.082  2
(AC006279) Plasmodium falciparum chromosome 12 clone PFYAC61...    36   0.15   5
(DU056340) 97952 Tomato HindIII BAC Library Solanum lycopers...    48   0.24   1
(X54253) Ascaris suum complete mitochondrial genome.               40   0.31   2
(BX690471) Xenopus tropicalis EST, clone TNeu101b24 3'.            30   0.40   3
(AL844506) Plasmodium falciparum 3D7 chromosome 7.                 42   0.46   5
(AL638229) Xenopus tropicalis EST, clone TNeu010h08 5'.            30   0.53   3
(EL843561) CBXT4433.g1 NICHD_XGC_trop_25 Xenopus (Silurana) ...    30   0.57   3
(EL843560) CBXT4433.b1 NICHD_XGC_trop_25 Xenopus (Silurana) ...    30   0.57   3
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117...    36   0.65   4
(CO129319) GR__Eb26O18.r GR__Eb Gossypium raimondii cDNA clo...    36   0.67   2
(CE122841) tigr-gss-dog-17000325959897 Dog Library Canis lup...    34   0.68   2
(DK278922) Drosophila auraria mRNA, adult full-length cDNA c...    34   0.70   2
(BJ091659) Xenopus laevis cDNA clone:XL097m21, 3' end, singl...    38   0.71   2
(AC192777) Mus musculus BAC clone RP23-186H19 from chromosom...    40   0.72   3
(BX726521) Xenopus tropicalis EST, clone TTpA061o18 3'.            30   0.75   3
(BX726520) Xenopus tropicalis EST, clone TTpA061o18 5'.            30   0.79   3
(BG555385) de94h04.x1 Wellcome CRC pRN3 St19 26 Xenopus laev...    38   0.80   2
(CU329689) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    36   0.80   4
(AC226407) Oryza minuta clone OM__Ba0018H10, complete sequence.    42   0.89   3
(AC084837) Homo sapiens chromosome 8, clone CTD-2005J16, com...    36   0.94   3
(AP010795) Lotus japonicus genomic DNA, chromosome 1, clone:...    46   0.94   1
(DJ032728) BIOMARKERS OF CYCLIN-DEPENDENT KINASE MODULATION.       46   0.94   1
(CS351434) Sequence 818 from Patent WO2006013561.                  46   0.94   1
(CS203495) Sequence 59 from Patent WO2005100608.                   46   0.94   1
(CS041450) Sequence 2004 from Patent WO2005019258.                 46   0.94   1
(CS032498) Sequence 2004 from Patent WO2005016962.                 46   0.94   1
(CQ697926) Sequence 42852 from Patent WO02070737.                  46   0.94   1
(BD451178) Human Cancer Associated Gene Sequences and Polype...    46   0.94   1
(GN418837) Sequence 42852 from Patent WO2002070737.                46   0.94   1
(GN078646) Sequence 59 from Patent WO2009029266.                   46   0.94   1
(GN002809) Sequence 2004 from Patent EP2014675.                    46   0.94   1
(GC639402) Sequence 42852 from patent US 7432049.                  46   0.94   1
(U90912) Human clone 23865 mRNA sequence.                          46   0.94   1
(BX640691) Homo sapiens mRNA; cDNA DKFZp686O11112 (from clon...    46   0.94   1
(AL356115) Human DNA sequence from clone RP11-486O22 on chro...    46   0.94   1
(AF241785) Homo sapiens NPD012 (NPD012) mRNA, complete cds.        46   0.94   1
(AC010350) Homo sapiens chromosome 5 clone CTD-2020P22, comp...    46   0.94   1
(AB032954) Homo sapiens mRNA for KIAA1128 protein, partial cds.    46   0.94   1
(AC127750) Rattus norvegicus clone CH230-29B24, *** SEQUENCI...    46   0.94   1
(AC108098) Homo sapiens chromosome 5 clone RP11-112E13, WORK...    46   0.94   1
(AC105865) Rattus norvegicus clone CH230-102C19, *** SEQUENC...    46   0.94   1
(FI184808) MUGQ_CH252P021B08T7_GL348_080 CHORI-252 Vervet Mo...    46   0.94   1
(FH457862) CHO_OF4328xf15f1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   0.94   1
(FH389509) CHO_OF4771xi22f1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   0.94   1
(EK361615) 1095469030894 Global-Ocean-Sampling_GS-31-01-01-1...    46   0.94   1
(DX822597) GH_MBb0005K14f GH_MBb Gossypium hirsutum genomic ...    46   0.94   1
(EG638992) gmapht_0019i04.pDNRm13r.scf Gadus morhua heart li...    46   0.94   1
(AV748631) Homo sapiens cDNA clone:NPCAIA02, 5'end, expresse...    46   0.94   1
(AV723347) Homo sapiens cDNA clone:HTBBEG06, 5'end, expresse...    46   0.94   1
(AV723346) Homo sapiens cDNA clone:HTBBEG05, 5'end, expresse...    46   0.94   1
(DV555815) DC05027G01 Panax ginseng cDNA library Panax ginse...    46   0.94   1
(DV555709) DC05026F03 Panax ginseng cDNA library Panax ginse...    46   0.94   1
(DV553950) DC05008B12 Panax ginseng cDNA library Panax ginse...    46   0.94   1
(DV553689) DC05005E03 Panax ginseng cDNA library Panax ginse...    46   0.94   1
(CK822844) ij18f01.y5 Melton Normalized Human Islet 4 N4-HIS...    46   0.94   1
(CD674089) fs06g01.y1 Human Lens cDNA (Normalized): fs Homo ...    46   0.94   1
(BQ716707) AGENCOURT_8215256 Lupski_sympathetic_trunk Homo s...    46   0.94   1
(BQ102493) ij18f01.y1 Melton Normalized Human Islet 4 N4-HIS...    46   0.94   1
(BQ101090) ij23h01.y1 Melton Normalized Human Islet 4 N4-HIS...    46   0.94   1
(AA984653) am86h07.s1 Stratagene schizo brain S11 Homo sapie...    46   0.94   1
(BM797897) K-EST0081217 S22SNU16 Homo sapiens cDNA clone S22...    46   0.94   1
(BE702331) QV3-NN1023-010600-199-h11 NN1023 Homo sapiens cDN...    46   0.94   1
(Z37016) H. sapiens partial cDNA sequence; clone HEB23A; sin...    46   0.94   1
(R35812) yg66e11.r1 Soares infant brain 1NIB Homo sapiens cD...    46   0.94   1
(R19353) yg24g09.r1 Soares infant brain 1NIB Homo sapiens cD...    46   0.94   1
(N57220) yw65e01.r1 Soares_placenta_8to9weeks_2NbHP8to9W Hom...    46   0.94   1
(GE886466) 1112934343504 BABEVCEREB-C-01-1-7KB Papio anubis ...    46   0.94   1
(GE865072) 1112870049276 BABEVCEREB-C-01-1-7KB Papio anubis ...    46   0.94   1
(FC076552) gmnbpcic_0004m04.pDNRm13r Gadus morhua pyloric ca...    46   0.94   1
(FC075244) gmnbpcic_0005n16.pDNRm13r Gadus morhua pyloric ca...    46   0.94   1
(CU915625) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   0.98   5
(GC702259) Sequence 17504 from patent US 6812339.                  36   0.98   4
(EC826386) SME00001297 esmbsro2 Sawyeria marylandensis cDNA,...    36   1.1    2
(CU469459) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   1.1    6
(AL844507) Plasmodium falciparum 3D7 chromosome 8.                 44   1.2    3
(CF287743) AGENCOURT_15212739 NICHD_XGC_Emb4 Xenopus laevis ...    38   1.2    2
(CB756459) AGENCOURT_12983591 NICHD_XGC_Tad1 Xenopus laevis ...    38   1.2    2
(CB562265) AGENCOURT_13318788 NICHD_XGC_Tad1 Xenopus laevis ...    38   1.2    2
(CF548080) AGENCOURT_15594843 NICHD_XGC_Eye1 Xenopus laevis ...    38   1.2    2
(EJ887457) 1093018425263 Global-Ocean-Sampling_GS-30-02-01-1...    38   1.3    2
(CD326164) AGENCOURT_14147097 NICHD_XGC_Eye1 Xenopus laevis ...    38   1.3    2
(CD362148) AGENCOURT_14236794 NICHD_XGC_Brn1 Xenopus laevis ...    38   1.3    2
(AL049180) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    36   1.3    4
(AL790365) Xenopus tropicalis EST, clone TNeu101b24 5'.            30   1.3    3
(AL659930) Xenopus tropicalis EST, clone TNeu036p24 5'.            30   1.3    3
(CT025680) Mouse DNA sequence from clone RP24-84H10 on chrom...    40   1.4    5
(AE014188) Plasmodium falciparum 3D7 chromosome 12, complete...    36   1.4    4
(AL157406) Human DNA sequence from clone RP3-380B4 on chromo...    40   1.5    4
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    38   1.5    7
(AC022522) Arabidopsis thaliana chromosome I BAC T28K15 geno...    34   1.5    3
(FP236422) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   1.5    5
(AL661522) Xenopus tropicalis EST, clone TNeu036d23 5'.            30   1.5    3
(CU856516) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   1.6    3
(AC008846) Homo sapiens chromosome 5 clone CTD-2165G8, compl...    42   1.6    3
(BX001036) Zebrafish DNA sequence from clone CH211-155G22 in...    34   1.6    5
(AC100820) Homo sapiens chromosome 8 clone RP11-1007I7 map 8.      36   1.7    3
(AC105150) Homo sapiens chromosome 8, clone RP11-328K2, comp...    36   1.7    3
(AC099286) Rattus norvegicus clone CH230-217C6, WORKING DRAF...    32   1.8    2
(AE001362) Plasmodium falciparum 3D7 chromosome 2, complete ...    38   1.8    4
(AC106220) Rattus norvegicus clone CH230-26P13, *** SEQUENCI...    32   1.9    2
(CT573118) Zebrafish DNA sequence from clone DKEY-193J22 in ...    38   1.9    3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    34   2.0    6
(CS374640) Sequence 743 from Patent WO2006034879.                  38   2.0    2
(CX431469) JGI_XZG62201.fwd NIH_XGC_tropGas7 Xenopus (Silura...    30   2.0    3
(CU463912) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   2.2    6
(AM482967) Vitis vinifera contig VV78X044419.13, whole genom...    34   2.2    2
(CR318626) Zebrafish DNA sequence from clone DKEY-29L7 in li...    40   2.2    3
(AC203076) Populus trichocarpa clone Pop1-41F08, complete se...    42   2.3    2
(AX345337) Sequence 408 from Patent WO0200928.                     32   2.3    3
(CU467633) Zebrafish DNA sequence from clone CH73-177H5 in l...    36   2.4    5
(CX438856) JGI_XZG6881.fwd NIH_XGC_tropGas7 Xenopus (Siluran...    30   2.4    3
(AC079214) Homo sapiens chromosome 3 clone RP11-605m1 map 3p...    34   2.5    4
(FP339583) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   2.5    4
(DR594366) WS00840.B21_J01 WS-X-N-A-9 Picea glauca cDNA clon...    34   2.5    2
(CO216404) WS0044.B21_O22 SS-R-A-5 Picea sitchensis cDNA clo...    34   2.5    2
(CX413386) JGI_XZT29792.fwd NIH_XGC_tropTad5 Xenopus (Silura...    30   2.5    3
(CU074309) Zebrafish DNA sequence from clone CH211-81L19 in ...    42   2.6    4
(B80783) CIT-HSP-2015F2.TFC CIT-HSP Homo sapiens genomic clo...    38   2.7    2
(CR571086) Xenopus tropicalis EST, clone THdA024e04 5'.            30   2.7    3
(AC141065) Homo sapiens chromosome 16 clone RP11-1299A22, WO...    40   2.7    2
(CX852935) JGI_CAAL9101.fwd NIH_XGC_tropBrn4 Xenopus (Silura...    30   2.8    3
(ER570280) 1093015789855 Global-Ocean-Sampling_GS-36-01-01-2...    34   2.8    3
(AQ235715) HS_2015_B2_C01_T7 CIT Approved Human Genomic Sper...    38   2.8    2
(CX335330) JGI_XZT18383.fwd NIH_XGC_tropTad5 Xenopus (Silura...    30   3.0    3
(AC126223) Oryza sativa Japonica Group chromosome 3 clone OS...    42   3.0    3
(BX088591) Zebrafish DNA sequence from clone CH211-205N20.         44   3.0    2
(AC177142) Strongylocentrotus purpuratus clone R3-4014N8, WO...    42   3.0    3
(AC171055) Bos taurus clone CH240-228F5, WORKING DRAFT SEQUE...    40   3.1    4
(BX005368) Zebrafish DNA sequence from clone CH211-64C10 in ...    44   3.1    2
(AC209182) Populus trichocarpa clone ACSB173-F10, complete s...    36   3.1    4
(CX884864) JGI_CAAL23095.fwd NIH_XGC_tropBrn4 Xenopus (Silur...    30   3.1    3
(AM483674) Vitis vinifera contig VV78X250413.7, whole genome...    38   3.1    2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    44   3.4    9
(AC173421) Bos taurus clone CH240-275B4, WORKING DRAFT SEQUE...    40   3.4    4
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete...    38   3.4    4
(DC203128) Plasmodium berghei strain ANKA cDNA clone:MG00226...    34   3.5    2
(BB977526) Plasmodium berghei str. ANKA cDNA clone: OK007504...    34   3.6    2
(FI240097) CccaBb005-D23JR CccABb Cajanus cajan genomic clon...    36   3.7    2
(BX548076) Zebrafish DNA sequence from clone CH211-154A22 in...    44   3.7    1
(AC147645) Gallus gallus BAC clone CH261-121C23 from chromos...    44   3.7    1
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN...    44   3.7    1
(AP001278) Oryza sativa Japonica Group genomic DNA, chromoso...    44   3.7    1
(AM463545) Vitis vinifera contig VV78X191796.3, whole genome...    44   3.7    1
(AM457535) Vitis vinifera contig VV78X110823.8, whole genome...    44   3.7    1
(AM453603) Vitis vinifera contig VV78X069543.2, whole genome...    44   3.7    1
(AC006841) Arabidopsis thaliana chromosome 2 clone F3K23 map...    44   3.7    1
(EA689017) Sequence 67896 from patent US 7365185.                  44   3.7    1
(CQ720501) Sequence 6435 from Patent WO02068579.                   44   3.7    1
(GC698315) Sequence 13560 from patent US 6812339.                  44   3.7    1
(GC697407) Sequence 12652 from patent US 6812339.                  44   3.7    1
(GC692445) Sequence 1818 from patent US 6812339.                   44   3.7    1
(AL133373) Human chromosome 14 DNA sequence BAC R-248B24 of ...    44   3.7    1
(AC090684) Homo sapiens chromosome 18, clone RP11-409K17, co...    44   3.7    1
(AC078873) Homo sapiens 12q BAC RP11-916O13 (Roswell Park Ca...    44   3.7    1
(AC013587) Homo sapiens chromosome 18, clone RP11-7L24, comp...    44   3.7    1
(AC007115) Homo sapiens chromosome 12 clone 917O5, complete ...    44   3.7    1
(AC147198) Sus scrofa clone RP44-473F3, WORKING DRAFT SEQUEN...    44   3.7    1
(AC123362) Rattus norvegicus clone CH230-155F17, *** SEQUENC...    44   3.7    1
(AC106246) Rattus norvegicus clone CH230-220G2, *** SEQUENCI...    44   3.7    1
(AC106231) Rattus norvegicus clone CH230-105P10, WORKING DRA...    44   3.7    1
(CU927917) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   3.7    1
(CU855982) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.7    1
(AC224717) Bos taurus clone CH240-477L19, WORKING DRAFT SEQU...    44   3.7    1
(ER609130) 1093016295617 Global-Ocean-Sampling_GS-36-01-01-2...    44   3.7    1
(EK560418) 1095521000314 Global-Ocean-Sampling_GS-32-01-01-1...    44   3.7    1
(EK535996) 1095516031446 Global-Ocean-Sampling_GS-32-01-01-1...    44   3.7    1
(EJ295718) 1095388036097 Global-Ocean-Sampling_GS-27-01-01-1...    44   3.7    1
(EI234433) OR__Ba0030J12.r OR__Ba Oryza rufipogon genomic cl...    44   3.7    1
(EI215237) OR__Ba0005D23.r OR__Ba Oryza rufipogon genomic cl...    44   3.7    1
(DU068188) 135185 Tomato HindIII BAC Library Solanum lycoper...    44   3.7    1
(DU020990) 507 Tomato HindIII BAC Library Solanum lycopersic...    44   3.7    1
(DE099742) Oryzias latipes DNA, clone: ola1-131D12.F, genomi...    44   3.7    1
(AG887436) Oryza sativa Indica Group genomic DNA, BAC end se...    44   3.7    1
(CL072925) CH216-126N24_Sp6.1 CH216 Xenopus (Silurana) tropi...    44   3.7    1
(EB907530) 9343019 ZF30 Danio rerio cDNA clone 3308980, mRNA...    44   3.7    1
(DY892333) CeleSEQ10529 Cunninghamella elegans pBluescript (...    44   3.7    1
(DY318261) AGENCOURT_66963140 NIH_MGC_366 Rattus norvegicus ...    44   3.7    1
(DW005031) KR3B.110G03F.051111T7 KR3B Nicotiana tabacum cDNA...    44   3.7    1
(AU037327) Dictyostelium discoideum slug cDNA, clone SSB775.       44   3.7    1
(AM842585) Nicotiana tabacum EST, clone nt002145035.               44   3.7    1
(AM804392) Nicotiana tabacum EST, clone nt006088054.               44   3.7    1
(AM786055) Nicotiana tabacum EST, clone nt002294093.               44   3.7    1
(C91283) Dictyostelium discoideum slug cDNA, clone SSJ746.         44   3.7    1
(BY903523) Cryptomeria japonica cDNA clone: CMFL021_G04, 3'e...    44   3.7    1
(BJ374506) Dictyostelium discoideum cDNA clone:ddc8b08, 3' e...    44   3.7    1
(FC801912) CBGC4729.fwd CBGC Lottia gigantea 15h 18h embryos...    44   3.7    1
(FC801911) CBGC4729.rev CBGC Lottia gigantea 15h 18h embryos...    44   3.7    1
(FC800034) CBGC3373.rev CBGC Lottia gigantea 15h 18h embryos...    44   3.7    1
(FC693137) CAXX3651.rev CAXX Lottia gigantea from male gonad...    44   3.7    1
(FC567018) CAWF6884.rev CAWF Lottia gigantea from mantle (H)...    44   3.7    1
(AC132875) Mus musculus chromosome 15, clone RP24-381O23, co...    36   3.9    4
(FH005524) CHO_OF401xi01f2.ab1 CHO_OF Nicotiana tabacum geno...    40   3.9    2
(CR962125) Medicago truncatula chromosome 5 clone mth2-179a9...    32   3.9    5
(FI044914) CHO_OF6472xh05r1.ab1 CHO_OF6 Nicotiana tabacum ge...    40   4.0    2
(CU640448) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   4.1    3
(AC159905) Pan troglodytes BAC clone CH251-347E2 from chromo...    34   4.1    4
(AC189196) Brassica rapa subsp. pekinensis clone KBrB004G11,...    32   4.2    5
(FH552730) CHO_OF4336xh01r1.ab1 CHO_OF4 Nicotiana tabacum ge...    40   4.2    2
(DC219192) Plasmodium berghei strain ANKA cDNA clone:MZ00065...    34   4.2    2
(AC170936) Bos taurus clone CH240-272J17, WORKING DRAFT SEQU...    36   4.2    4
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    34   4.3    11
(BZ443326) BONGV52TR BO_1.6_2_KB_tot Brassica oleracea genom...    34   4.3    2
(BX957242) Zebrafish DNA sequence from clone CH211-129B17 in...    40   4.3    3
(AM436050) Vitis vinifera contig VV78X125157.8, whole genome...    36   4.5    2
(AC122909) Mus musculus BAC clone RP23-53K17 from 10, comple...    34   4.6    4
(AC131950) Homo sapiens BAC clone RP11-329O10 from 2, comple...    40   4.9    2
(AP009098) Marchantia polymorpha genomic DNA, chromosome Y, ...    36   5.1    3
(GC701910) Sequence 17155 from patent US 6812339.                  34   5.4    3
(AC203555) Medicago truncatula clone mth2-58e9, complete seq...    38   5.5    5
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    36   5.5    5
(CU856432) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    30   5.6    8
(CU013529) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   5.7    5
(CR936282) Zebrafish DNA sequence from clone DKEY-108D10 in ...    36   6.0    4
(AE014185) Plasmodium falciparum 3D7 chromosome 10, complete...    38   6.2    5
(CR855322) Zebrafish DNA sequence from clone CH211-267N3 in ...    36   6.4    4
(CU929740) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   6.6    4
(AC160570) Pan troglodytes BAC clone CH251-15C5 from chromos...    34   6.6    4
(CR847807) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    32   6.6    2
(BX663513) Zebrafish DNA sequence from clone DKEY-234F12 in ...    32   6.7    2
(CR812941) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    32   6.8    2
(AC222697) Bos taurus clone CH240-441J16, WORKING DRAFT SEQU...    38   6.8    5
(AC090192) Homo sapiens chromosome 8, clone RP11-383J24, com...    32   6.8    2
(AC104317) Homo sapiens chromosome 8 clone RP11-383J24 map q...    32   6.8    2
(FP090263) Brassica rapa subsp. pekinensis clone KBrH045L01,...    36   6.8    3
(AC121588) Mus musculus chromosome 3 clone RP23-275K22, comp...    32   6.8    2
(AC104041) Homo sapiens chromosome 15, clone CTD-2034I4, com...    30   6.8    2
(AC165160) Mus musculus BAC clone RP23-200E23 from chromosom...    32   6.9    2
(CT573235) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    32   6.9    2
(AC093300) Homo sapiens chromosome 5 clone RP11-560A7, compl...    30   7.0    2
(AC173287) Medicago truncatula chromosome 2 BAC clone mte1-5...    42   7.2    3
(AM466421) Vitis vinifera contig VV78X231846.13, whole genom...    38   7.5    2
(BX296524) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   7.5    4
(AC151321) Xenopus (Silurana) tropicalis clone ISB-251F6, co...    34   7.5    4
(BX511217) Zebrafish DNA sequence from clone RP71-30M8 in li...    36   7.6    4
(AC158911) Mus musculus chromosome 5, clone RP24-363D4, comp...    38   7.6    2
(AC141825) Apis mellifera clone CH224-62B13, *** SEQUENCING ...    36   7.6    3
(AM469524) Vitis vinifera contig VV78X263119.7, whole genome...    32   7.8    2
(AC124334) Mus musculus chromosome 6 clone RP24-435B12 map 6...    36   7.9    5
(AC111395) Rattus norvegicus clone CH230-161P21, WORKING DRA...    38   8.1    3
(AC170804) Mus musculus BAC clone RP24-435B12 from chromosom...    36   8.1    5
(AC094557) Rattus norvegicus clone CH230-2N9, WORKING DRAFT ...    34   8.1    3
(AC180055) Strongylocentrotus purpuratus clone R3-3030C19, W...    38   8.1    3
(AP009112) Marchantia polymorpha genomic DNA, chromosome Y, ...    36   8.4    2
(AC096319) Rattus norvegicus clone CH230-162P21, WORKING DRA...    38   8.4    3
(CU633960) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   8.4    4
(AC196189) Solanum lycopersicum chromosome 5 clone C05HBa007...    38   8.5    2
(AC215941) Populus trichocarpa clone POP050-B20, complete se...    32   8.5    6
(CP001425) Borrelia burgdorferi 64b plasmid 64b_lp36, comple...    34   8.6    4
(AE000788) Borrelia burgdorferi B31 plasmid lp36, complete s...    34   8.6    4
(FH101205) CHO_OF3074xb08f1.ab1 CHO_OF3 Nicotiana tabacum ge...    32   8.7    2
(FP245469) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   8.7    3
(BX511123) Zebrafish DNA sequence from clone DKEY-201I6 in l...    40   8.7    4
(EF434649) Mytilus sp. 13LR 16S ribosomal RNA gene, partial ...    30   8.8    2
(BX005438) Zebrafish DNA sequence from clone DKEY-3E9 in lin...    38   8.9    3
(CR855305) Zebrafish DNA sequence from clone DKEY-98F17 in l...    32   8.9    6
(AM445214) Vitis vinifera contig VV78X010437.1, whole genome...    32   8.9    2
(AC180409) Strongylocentrotus purpuratus clone R3-3103O23, W...    36   9.0    4
(AC157722) Xenopus (Silurana) tropicalis clone ISB1-274A3, W...    32   9.1    4
(BU901991) AGENCOURT_10229967 NICHD_XGC_Ov1 Xenopus laevis c...    32   9.3    2
(DX559105) GH_MBb0056I04r GH_MBb Gossypium hirsutum genomic ...    32   9.3    2
(BZ523025) BOKAB65TF BO_10_15_KB_nuc Brassica oleracea genom...    32   9.3    2
(BH247212) BOGAZ08TF BOGA Brassica oleracea genomic clone BO...    32   9.3    2
(BH250760) BOGAH67TF BOGA Brassica oleracea genomic clone BO...    32   9.3    2
(DX412140) SOYF232TH LargeInsertSoybeanGenLibBuild4 Glycine ...    32   9.3    2
(BZ035996) oeh99d05.g1 B.oleracea002 Brassica oleracea genom...    32   9.4    2
(BH474778) BOGCP28TF BOGC Brassica oleracea genomic clone BO...    32   9.4    2
(BJ329353) Dictyostelium discoideum cDNA clone:dda24m16, 5' ...    32   9.4    2
(B88962) CIT-HSP-2174G1.TR CIT-HSP Homo sapiens genomic clon...    32   9.5    2
(BJ389075) Dictyostelium discoideum cDNA clone:dds17m10, 5' ...    32   9.5    2
(AC216652) Solanum lycopersicum chromosome 6 clone C06HBa022...    36   9.6    3
(AL935132) Mouse DNA sequence from clone RP23-8G23 on chromo...    36   9.6    4
(AC232714) Solanum lycopersicum chromosome 05 clone C05SLm00...    32   9.7    6
(AC189534) Brassica rapa subsp. pekinensis clone KBrH001J06,...    36   9.8    3
(CT573233) Zebrafish DNA sequence from clone DKEY-191G9 in l...    34   10.0   5

>(AU266846) Dictyostelium discoideum vegetative cDNA clone:VSG830,
           5' end single read.
          Length = 364

 Score =  613 bits (309), Expect = e-171
 Identities = 309/309 (100%)
 Strand = Plus / Plus


Query: 5   aattaaaatcaaaataacatttccaacataatatatatataaatacaatgagcgcaccag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aattaaaatcaaaataacatttccaacataatatatatataaatacaatgagcgcaccag 60


Query: 65  atattttaaaagattttaaaggttcattaactattgaacaagatggatcaatttcaagtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atattttaaaagattttaaaggttcattaactattgaacaagatggatcaatttcaagtg 120


Query: 125 cttcaggtattttacaagaaagtttctataataataaagaatttgcaagcaccattattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cttcaggtattttacaagaaagtttctataataataaagaatttgcaagcaccattattt 180


Query: 185 caatgttacacgacgtcaataaaattacatcttcaaataatcaagaatttaaaagaatga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caatgttacacgacgtcaataaaattacatcttcaaataatcaagaatttaaaagaatga 240


Query: 245 cagtttcattttcagaacaaacatttatagtcacagcaattggaactaaaatttatgtag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cagtttcattttcagaacaaacatttatagtcacagcaattggaactaaaatttatgtag 300


Query: 305 ttgtacaat 313
           |||||||||
Sbjct: 301 ttgtacaat 309

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 595,564,058
Number of extensions: 72742206
Number of successful extensions: 4965708
Number of sequences better than 10.0: 289
Length of query: 367
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 344
Effective length of database: 102,190,702,835
Effective search space: 35153601775240
Effective search space used: 35153601775240
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

Query= Contig-U05085-1 (Contig-U05085-1Q) /CSM_Contig/Contig-U05085-1Q.Seq.d
         (367 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54DY3) RecName: Full=UPF0539 protein;                               168   5e-41
FN357438_20(FN357438|pid:none) Schistosoma mansoni genome sequen...    50   3e-05
(A9UMU8) RecName: Full=UPF0539 protein C7orf59 homolog;  &BC1578...    47   2e-04
AE015927_107(AE015927|pid:none) Clostridium tetani E88, complete...    34   1.8
CP001400_1957(CP001400|pid:none) Sulfolobus islandicus M.14.25, ...    33   2.4
CP000554_2470(CP000554|pid:none) Prochlorococcus marinus str. MI...    33   2.4
AY596297_2213(AY596297|pid:none) Haloarcula marismortui ATCC 430...    33   3.1
AY915138_1(AY915138|pid:none) Schistosoma japonicum SJCHGC03082 ...    33   3.1
BX548175_2415(BX548175|pid:none) Prochlorococcus marinus MIT9313...    32   5.4
CP000702_1737(CP000702|pid:none) Thermotoga petrophila RKU-1, co...    32   9.2
DQ073431_6(DQ073431|pid:none) Thermotoga sp. RQ2 RQ2_R7 region, ...    32   9.2

>(Q54DY3) RecName: Full=UPF0539 protein;
          Length = 87

 Score =  168 bits (426), Expect = 5e-41
 Identities = 87/87 (100%), Positives = 87/87 (100%)
 Frame = +1

Query: 52  MSAPDILKDFKGSLTIEQDGSISSASGILQESFYNNKEFASTIISMLHDVNKITSSNNQE 231
           MSAPDILKDFKGSLTIEQDGSISSASGILQESFYNNKEFASTIISMLHDVNKITSSNNQE
Sbjct: 1   MSAPDILKDFKGSLTIEQDGSISSASGILQESFYNNKEFASTIISMLHDVNKITSSNNQE 60

Query: 232 FKRMTVSFSEQTFIVTAIGTKIYVVVQ 312
           FKRMTVSFSEQTFIVTAIGTKIYVVVQ
Sbjct: 61  FKRMTVSFSEQTFIVTAIGTKIYVVVQ 87

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 459,103,834
Number of extensions: 7436434
Number of successful extensions: 20531
Number of sequences better than 10.0: 11
Number of HSP's gapped: 20526
Number of HSP's successfully gapped: 11
Length of query: 122
Length of database: 1,061,185,681
Length adjustment: 88
Effective length of query: 34
Effective length of database: 773,562,257
Effective search space: 26301116738
Effective search space used: 26301116738
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)

 psg: 0.83  gvh: 0.33  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for Contig-U05085-1 is cyt