Contig-U05076-1
Contig ID Contig-U05076-1
Contig update 2001. 8.29
Contig sequence
>Contig-U05076-1 (Contig-U05076-1Q) /CSM_Contig/Contig-U05076-1Q.Seq.d
AAAGAAAATTTAGAGAATATATATCACTTTATATAAAAGATAAATAACCA
AACAAAAAAAAAATGGGAAGATTGTTTAAAACTTATCTCACTGGACCAAG
TATAATTTGTTGTTTAAATTGTAAAACTCACTTAACTCTTCACGATCAAT
TAATTTCAAAGCAATTTCAAGGTAGACATGGTACAGCATTTTTATTTGGT
ACTTGTTCAAATATAACAGTTGGCCCAAGTGAAGATAGAACATTAACAAC
TGGAATGCATATTGTTGCCGATATCTATTGTATAGATTGTGGTGAAACTT
TAGGTTGGAAATATGAATTTGCAAAAGAGGAATCTCAAAAATATNAAGTT
GGAAAATACATTTTAGAGAAAGCAAAGATTCAAAAAGAAGTTAACTTTGG
AACTCAACACCAACCACATTCTTTAGTTGCATTAGAAAACAGTATTATGT
AACTTTTTTTTTTTTTTTTGAAAAAAAAACATTCAAAAAAAAAAAAANAT
AAACATCCATCAAAAAAA

Gap no gap
Contig length 518
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 1236787
End point 1236269
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U05076
List of clone(s)

est1=SSF125E,1,519
Translated Amino Acid sequence
rkfreyislyikdk*PNKKKMGRLFKTYLTGPSIICCLNCKTHLTLHDQLISKQFQGRHG
TAFLFGTCSNITVGPSEDRTLTTGMHIVADIYCIDCGETLGWKYEFAKEESQKYXVGKYI
LEKAKIQKEVNFGTQHQPHSLVALENSIM*lfffflkkkhskkkkxkhpskk


Translated Amino Acid sequence (All Frames)
Frame A:
kenleniyhfi*kinnqtkkkwedclklisldqv*fvv*ivklt*lftin*fqsnfkvdm
vqhfylvlvqi*qlaqvkieh*qlecillpisiv*ivvkl*vgnmnlqkrnlknxklent
f*rkqrfkkkltlelntnhil*lh*ktvlcnfffff*kkniqkkkxinihqk


Frame B:
kki*riyitlykr*itkqkkngkiv*nlshwtkynllfkl*nslnssrsinfkaisr*tw
ysifiwylfkynswpk*r*ninnwnayccryllyrlw*nfrlei*ickrgiskixswkih
freskdskrs*lwnstpttffscirkqyyvtfffffekktfkkkkx*tsikk


Frame C:
rkfreyislyikdk*PNKKKMGRLFKTYLTGPSIICCLNCKTHLTLHDQLISKQFQGRHG
TAFLFGTCSNITVGPSEDRTLTTGMHIVADIYCIDCGETLGWKYEFAKEESQKYXVGKYI
LEKAKIQKEVNFGTQHQPHSLVALENSIM*lfffflkkkhskkkkxkhpskk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05076-1 (Contig-U05076-1Q)
/CSM_Contig/Contig-U05076-1Q.Seq.d
(518 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05076-1 (Contig-U05076-1Q) /CSM_Contig/Conti... 833 0.0
Contig-U12516-1 (Contig-U12516-1Q) /CSM_Contig/Conti... 36 0.036
Contig-U11235-1 (Contig-U11235-1Q) /CSM_Contig/Conti... 36 0.036
Contig-U02455-1 (Contig-U02455-1Q) /CSM_Contig/Conti... 36 0.036
Contig-U02321-1 (Contig-U02321-1Q) /CSM_Contig/Conti... 36 0.036
Contig-U04466-1 (Contig-U04466-1Q) /CSM_Contig/Conti... 34 0.14
Contig-U02210-1 (Contig-U02210-1Q) /CSM_Contig/Conti... 34 0.14
Contig-U14695-1 (Contig-U14695-1Q) /CSM_Contig/Conti... 32 0.56
Contig-U13660-1 (Contig-U13660-1Q) /CSM_Contig/Conti... 32 0.56
Contig-U12817-1 (Contig-U12817-1Q) /CSM_Contig/Conti... 32 0.56

>Contig-U05076-1 (Contig-U05076-1Q) /CSM_Contig/Contig-U05076-1Q.Seq.d
Length = 518

Score = 833 bits (420), Expect = 0.0
Identities = 443/453 (97%)
Strand = Plus / Plus


Query: 1 aaagaaaatttagagaatatatatcactttatataaaagataaataaccaaacnnnnnnn 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagaaaatttagagaatatatatcactttatataaaagataaataaccaaacaaaaaaa 60


Query: 61 nnntgggaagattgtttaaaacttatctcactggaccaagtataatttgttgtttaaatt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaatgggaagattgtttaaaacttatctcactggaccaagtataatttgttgtttaaatt 120


Query: 121 gtaaaactcacttaactcttcacgatcaattaatttcaaagcaatttcaaggtagacatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtaaaactcacttaactcttcacgatcaattaatttcaaagcaatttcaaggtagacatg 180


Query: 181 gtacagcatttttatttggtacttgttcaaatataacagttggcccaagtgaagatagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtacagcatttttatttggtacttgttcaaatataacagttggcccaagtgaagatagaa 240


Query: 241 cattaacaactggaatgcatattgttgccgatatctattgtatagattgtggtgaaactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cattaacaactggaatgcatattgttgccgatatctattgtatagattgtggtgaaactt 300


Query: 301 taggttggaaatatgaatttgcaaaagaggaatctcaaaaatatnaagttggaaaataca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taggttggaaatatgaatttgcaaaagaggaatctcaaaaatatnaagttggaaaataca 360


Query: 361 ttttagagaaagcaaagattcaaaaagaagttaactttggaactcaacaccaaccacatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttttagagaaagcaaagattcaaaaagaagttaactttggaactcaacaccaaccacatt 420


Query: 421 ctttagttgcattagaaaacagtattatgtaac 453
|||||||||||||||||||||||||||||||||
Sbjct: 421 ctttagttgcattagaaaacagtattatgtaac 453


>Contig-U12516-1 (Contig-U12516-1Q) /CSM_Contig/Contig-U12516-1Q.Seq.d
Length = 736

Score = 36.2 bits (18), Expect = 0.036
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 374 aaagattcaaaaagaagt 391
||||||||||||||||||
Sbjct: 585 aaagattcaaaaagaagt 602


>Contig-U11235-1 (Contig-U11235-1Q) /CSM_Contig/Contig-U11235-1Q.Seq.d
Length = 2158

Score = 36.2 bits (18), Expect = 0.036
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 7 aatttagagaatatatat 24
||||||||||||||||||
Sbjct: 1157 aatttagagaatatatat 1174


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5747
Number of Sequences: 6905
Number of extensions: 5747
Number of successful extensions: 555
Number of sequences better than 10.0: 162
length of query: 518
length of database: 5,674,871
effective HSP length: 16
effective length of query: 502
effective length of database: 5,564,391
effective search space: 2793324282
effective search space used: 2793324282
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7.10
Homology vs DNA
Query= Contig-U05076-1 (Contig-U05076-1Q) /CSM_Contig/Contig-U05076-1Q.Seq.d
(518 letters)

Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C92717) Dictyostelium discoideum slug cDNA, clone SSF125. 767 0.0 2
(FG291554) 1108793348415 New World Screwworm Egg 9261 ESTs C... 36 0.005 2
(AC151971) Mus musculus BAC clone RP24-282C4 from 9, complet... 48 0.34 1
(AC125129) Mus musculus BAC clone RP24-308H8 from chromosome... 48 0.34 1
(DX543370) GH_MBb0026C07r GH_MBb Gossypium hirsutum genomic ... 48 0.34 1
(DV786584) HW_LIVER_53_H11 Bos taurus CF-24-HW liver cDNA li... 48 0.34 1
(FG284835) 1108770682807 New World Screwworm Egg 9261 ESTs C... 36 0.95 2
(CU207324) Mouse DNA sequence from clone DN-24D21 on chromos... 46 1.4 1
(AL603923) Mouse DNA sequence from clone RP23-180L15 on chro... 46 1.4 1
(ER365056) 1093018978856 Global-Ocean-Sampling_GS-34-01-01-1... 46 1.4 1
(EK043261) 1092959534480 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.4 1
(EJ614085) 1092963006527 Global-Ocean-Sampling_GS-29-01-01-1... 46 1.4 1
(EJ549503) 1092959431311 Global-Ocean-Sampling_GS-29-01-01-1... 46 1.4 1
(EJ521936) 1092955148440 Global-Ocean-Sampling_GS-29-01-01-1... 46 1.4 1
(EJ188003) 1092344167459 Global-Ocean-Sampling_GS-27-01-01-1... 46 1.4 1
(DR909416) USDA-FP_17544 Citrus sinensis phloem Citrus sinen... 46 1.4 1
(DC885686) Citrus unshiu mRNA, clone: BFC3E08, 5'-end sequen... 46 1.4 1
(CX641370) UCRPT02_52F04_g Poncirus trifoliata Roots with Ir... 46 1.4 1
(CX641369) UCRPT02_52F04_b Poncirus trifoliata Roots with Ir... 46 1.4 1
(CK939253) CGF1004432_C09 Developing fruit albedo at 165 DAF... 46 1.4 1
(AA679858) ac83g07.s1 Stratagene lung (#937210) Homo sapiens... 46 1.4 1
(BB903982) Trifolium pratense cDNA clone:RCE01847. 46 1.4 1
(EY784234) CR05-C3-700-044-B05-CT.F Mandarin fruit, developm... 46 1.4 1
(EY678055) CS00-C1-401-042-G09-CT.F Sweet orange leaf, infec... 46 1.4 1
(DU128246) KBrH104H02R Brassica rapa BAC library KBrH Brassi... 38 1.7 2
(AC104131) Homo sapiens BAC clone RP11-324H23 from 2, comple... 40 2.7 4
(AC141823) Apis mellifera clone CH224-62B18, WORKING DRAFT S... 40 3.4 4
(BV998878) pRRL2:Newb:20080411:379221 USMARC Pig Breed SNP D... 38 3.4 2
(AC159545) Mus musculus 6 BAC RP23-244E8 (Roswell Park Cance... 44 3.5 4
(GH197176) PFD5 Pandanus fascicularis L. flower-specific cDN... 34 3.6 2
(DK979771) Papilio xuthus mRNA, clone: PxutEST_ftfRN43d06, 5... 34 3.6 2
(DK979802) Papilio xuthus mRNA, clone: PxutEST_ftfRN43f08, 5... 34 3.6 2
(BX465857) Zebrafish DNA sequence from clone DKEYP-59A12 in ... 44 5.3 1
(BV218467) S233P6149RD2.T0 LabradorRetriever Canis familiari... 44 5.3 1
(AC174651) Mus musculus BAC clone CH25-241D1 from chromosome... 44 5.3 1
(AC153381) Mus musculus 6 BAC RP23-397L23 (Roswell Park Canc... 44 5.3 1
(AC112997) Mus musculus chromosome 8, clone RP24-484I6, comp... 44 5.3 1
(Z81552) Caenorhabditis elegans Cosmid F56G4. 44 5.3 1
(AC141703) Apis mellifera clone CH224-56H13, *** SEQUENCING ... 44 5.3 1
(AC136552) Rattus norvegicus clone CH230-2K24, *** SEQUENCIN... 44 5.3 1
(AC101576) Mus musculus clone RP23-197E14, LOW-PASS SEQUENCE... 44 5.3 1
(AC098133) Rattus norvegicus clone CH230-162B20, WORKING DRA... 44 5.3 1
(CU302437) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.3 1
(EJ798871) 1093017415621 Global-Ocean-Sampling_GS-30-02-01-1... 44 5.3 1
(EJ781807) 1093017261923 Global-Ocean-Sampling_GS-30-02-01-1... 44 5.3 1
(CR174864) Reverse strand read from insert in 5'HPRT inserti... 44 5.3 1
(CR060489) Reverse strand read from insert in 5'HPRT inserti... 44 5.3 1
(EL696945) CF_WO0_28g07_SP6 Copepod Whole Organism, Normaliz... 44 5.3 1
(Y11173) Bacillus thuringiensis plasmid DNA ORF1-ORF4, ORF6-... 36 6.9 2
(AZ666979) 1M0549A05R Mouse 10kb plasmid UUGC1M library Mus ... 40 6.9 2
(EK331276) 1095467024559 Global-Ocean-Sampling_GS-31-01-01-1... 32 7.6 3
(AC236166) Glycine max strain Williams 82 clone GM_WBb0067G0... 42 8.4 3
(EJ307626) 1095390109307 Global-Ocean-Sampling_GS-27-01-01-1... 38 8.5 2
(AC160619) Loxodonta africana clone VMRC15-72J20, WORKING DR... 40 9.4 3
(AC221310) Bos taurus clone CH240-403D23, WORKING DRAFT SEQU... 32 9.7 2
(CU633581) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 9.7 3
(AC175506) Bos taurus clone CH240-400H14, WORKING DRAFT SEQU... 32 9.7 2
(CU927910) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 9.9 6

>(C92717) Dictyostelium discoideum slug cDNA, clone SSF125.
Length = 519

Score = 767 bits (387), Expect(2) = 0.0
Identities = 390/390 (100%)
Strand = Plus / Plus


Query: 64 tgggaagattgtttaaaacttatctcactggaccaagtataatttgttgtttaaattgta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 tgggaagattgtttaaaacttatctcactggaccaagtataatttgttgtttaaattgta 123


Query: 124 aaactcacttaactcttcacgatcaattaatttcaaagcaatttcaaggtagacatggta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aaactcacttaactcttcacgatcaattaatttcaaagcaatttcaaggtagacatggta 183


Query: 184 cagcatttttatttggtacttgttcaaatataacagttggcccaagtgaagatagaacat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 cagcatttttatttggtacttgttcaaatataacagttggcccaagtgaagatagaacat 243


Query: 244 taacaactggaatgcatattgttgccgatatctattgtatagattgtggtgaaactttag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 taacaactggaatgcatattgttgccgatatctattgtatagattgtggtgaaactttag 303


Query: 304 gttggaaatatgaatttgcaaaagaggaatctcaaaaatatnaagttggaaaatacattt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 gttggaaatatgaatttgcaaaagaggaatctcaaaaatatnaagttggaaaatacattt 363


Query: 364 tagagaaagcaaagattcaaaaagaagttaactttggaactcaacaccaaccacattctt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tagagaaagcaaagattcaaaaagaagttaactttggaactcaacaccaaccacattctt 423


Query: 424 tagttgcattagaaaacagtattatgtaac 453
||||||||||||||||||||||||||||||
Sbjct: 424 tagttgcattagaaaacagtattatgtaac 453

Score = 105 bits (53), Expect(2) = 0.0
Identities = 53/53 (100%)
Strand = Plus / Plus


Query: 1 aaagaaaatttagagaatatatatcactttatataaaagataaataaccaaac 53
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagaaaatttagagaatatatatcactttatataaaagataaataaccaaac 53

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 657,996,362
Number of extensions: 38676303
Number of successful extensions: 3161227
Number of sequences better than 10.0: 58
Length of query: 518
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 495
Effective length of database: 102,190,702,835
Effective search space: 50584397903325
Effective search space used: 50584397903325
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.31
Homology vs Protein
Query= Contig-U05076-1 (Contig-U05076-1Q) /CSM_Contig/Contig-U05076-1Q.Seq.d
(518 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AM463463_1(AM463463|pid:none) Vitis vinifera contig VV78X222111.... 143 3e-33
AK061812_1(AK061812|pid:none) Oryza sativa Japonica Group cDNA c... 138 9e-32
AP008218_869(AP008218|pid:none) Oryza sativa (japonica cultivar-... 137 2e-31
AL035602_23(AL035602|pid:none) Arabidopsis thaliana DNA chromoso... 135 8e-31
(Q9T096) RecName: Full=Protein yippee-like At4g27745; 135 8e-31
EU952005_1(EU952005|pid:none) Zea mays clone 1064728 protein yip... 129 3e-29
EF083920_1(EF083920|pid:none) Picea sitchensis clone WS0283_A12 ... 129 4e-29
EU974178_1(EU974178|pid:none) Zea mays clone 442089 protein yipp... 125 5e-28
(Q9C777) RecName: Full=Protein yippee-like At3g11230; &AC073395... 120 2e-26
EF084160_1(EF084160|pid:none) Picea sitchensis clone WS0283_K01 ... 120 2e-26
AY088681_1(AY088681|pid:none) Arabidopsis thaliana clone 9180 mR... 119 3e-26
(Q2YDI3) RecName: Full=Protein yippee-like 2; &(Q5RDN9) RecName... 119 6e-26
EF144626_1(EF144626|pid:none) Populus trichocarpa clone WS01116_... 119 6e-26
AE017347_358(AE017347|pid:none) Cryptococcus neoformans var. neo... 118 8e-26
AC007658_2(AC007658|pid:none) Arabidopsis thaliana chromosome II... 117 1e-25
AE017347_355(AE017347|pid:none) Cryptococcus neoformans var. neo... 117 2e-25
BT080189_1(BT080189|pid:none) Caligus clemensi clone ccle-evs-50... 116 3e-25
EU968819_1(EU968819|pid:none) Zea mays clone 324316 protein yipp... 116 3e-25
BC074501_1(BC074501|pid:none) Homo sapiens yippee-like 1 (Drosop... 116 4e-25
(Q9U3G6) RecName: Full=Protein yippee-like F37A8.5; &T21895(T21... 115 7e-25
AM438968_1(AM438968|pid:none) Vitis vinifera contig VV78X251859.... 114 1e-24
(P59234) Protein yippee-like. &AB061267_1(AB061267|pid:none) &E... 114 1e-24
CR940348_911(CR940348|pid:none) Theileria annulata strain Ankara... 114 1e-24
(Q65Z54) RecName: Full=Protein yippee-like 3; AltName: Full=Prot... 113 2e-24
AK054967_1(AK054967|pid:none) Homo sapiens cDNA FLJ30405 fis, cl... 112 4e-24
AP007159_549(AP007159|pid:none) Aspergillus oryzae RIB40 genomic... 112 4e-24
EU962387_1(EU962387|pid:none) Zea mays clone 242236 protein yipp... 112 6e-24
AK176141_1(AK176141|pid:none) Arabidopsis thaliana mRNA for zinc... 112 6e-24
BC009171_1(BC009171|pid:none) Mus musculus yippee-like 3 (Drosop... 111 1e-23
BC149329_1(BC149329|pid:none) Bos taurus yippee-like 3 (Drosophi... 111 1e-23
AK004431_1(AK004431|pid:none) Mus musculus 18-day embryo whole b... 110 2e-23
AM920433_484(AM920433|pid:none) Penicillium chrysogenum Wisconsi... 110 2e-23
AC009326_2(AC009326|pid:none) Arabidopsis thaliana chromosome II... 110 3e-23
AY814552_1(AY814552|pid:none) Schistosoma japonicum SJCHGC03002 ... 108 6e-23
AM910989_227(AM910989|pid:none) Plasmodium knowlesi strain H chr... 108 1e-22
AL844508_255(AL844508|pid:none) Plasmodium falciparum 3D7 chromo... 107 2e-22
FJ234838_18(FJ234838|pid:none) Brachypodium sylvaticum clone BAC... 106 4e-22
BT080330_1(BT080330|pid:none) Caligus clemensi clone ccle-evs-51... 105 5e-22
BT083192_1(BT083192|pid:none) Anoplopoma fimbria clone afim-evh-... 105 9e-22
BT076627_1(BT076627|pid:none) Caligus rogercresseyi clone crog-e... 105 9e-22
(Q9XZF0) RecName: Full=Protein yippee; &AE014298_1985(AE014298|... 105 9e-22
AY190690_1(AY190690|pid:none) Pagrus major yippee protein mRNA, ... 104 2e-21
(P62699) RecName: Full=Protein yippee-like 5; &(P62700) RecName... 103 2e-21
AB098744_1(AB098744|pid:none) Mus musculus Ypel5 mRNA for yippee... 103 3e-21
AK165943_1(AK165943|pid:none) Mus musculus lung RCB-0558 LLC cDN... 102 4e-21
AK169986_1(AK169986|pid:none) Mus musculus NOD-derived CD11c +ve... 102 6e-21
AK339916_1(AK339916|pid:none) Acyrthosiphon pisum ACYPI005612 mR... 102 6e-21
(Q4R4Q6) Protein yippee-like 5. &AB169838_1(AB169838|pid:none) 102 7e-21
EU968388_1(EU968388|pid:none) Zea mays clone 320100 protein yipp... 101 1e-20
AB160983_1(AB160983|pid:none) Oryzias latipes Ypelb mRNA for yip... 101 1e-20
EU972435_1(EU972435|pid:none) Zea mays clone 381192 protein yipp... 100 3e-20
AX885076_1(AX885076|pid:none) Sequence 939 from Patent EP1033401. 99 5e-20
AY461708_1(AY461708|pid:none) Bombyx mori hemolin-interacting pr... 99 6e-20
CP001574_286(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 98 1e-19
(Q2V3E2) RecName: Full=Protein yippee-like At4g27740; &AK229353... 95 1e-18
CR382130_607(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 94 2e-18
AK006049_1(AK006049|pid:none) Mus musculus adult male testis cDN... 94 2e-18
AY915289_1(AY915289|pid:none) Schistosoma japonicum SJCHGC04272 ... 93 3e-18
AX882122_1(AX882122|pid:none) Sequence 17027 from Patent EP10746... 90 3e-17
CT005267_370(CT005267|pid:none) Leishmania major strain Friedlin... 89 5e-17
AM502248_396(AM502248|pid:none) Leishmania infantum chromosome 30. 89 5e-17
CR382125_254(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 89 7e-17
AM920436_1133(AM920436|pid:none) Penicillium chrysogenum Wiscons... 87 3e-16
AF038604_4(AF038604|pid:none) Caenorhabditis elegans cosmid B054... 87 3e-16
AM494967_351(AM494967|pid:none) Leishmania braziliensis chromoso... 87 3e-16
AP007154_661(AP007154|pid:none) Aspergillus oryzae RIB40 genomic... 86 6e-16
AE017346_390(AE017346|pid:none) Cryptococcus neoformans var. neo... 86 6e-16
EU952358_1(EU952358|pid:none) Zea mays clone 1278358 unknown mRNA. 85 1e-15
AC008146_35(AC008146|pid:none) Trypanosoma brucei chromosome 6 c... 83 5e-15
(P38191) RecName: Full=Protein yippee-like MOH1; &AY692611_1(AY... 83 5e-15
AM270040_91(AM270040|pid:none) Aspergillus niger contig An02c046... 81 1e-14
CR380952_184(CR380952|pid:none) Candida glabrata strain CBS138 c... 79 7e-14
CU928169_63(CU928169|pid:none) Kluyveromyces thermotolerans stra... 78 2e-13
CU928179_751(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 75 7e-13
AL928914_3(AL928914|pid:none) Mouse DNA sequence from clone RP23... 74 2e-12
BT057508_1(BT057508|pid:none) Salmo salar clone ssal-evf-550-164... 69 9e-11
FN392319_118(FN392319|pid:none) Pichia pastoris GS115 chromosome... 65 8e-10
CR382138_152(CR382138|pid:none) Debaryomyces hansenii strain CBS... 65 1e-09
FM992691_302(FM992691|pid:none) Candida dubliniensis CD36 chromo... 63 4e-09
AX972231_1(AX972231|pid:none) Sequence 3034 from Patent EP110480... 59 7e-08
BC029228_1(BC029228|pid:none) Homo sapiens yippee-like 4 (Drosop... 48 2e-04
FN313732_1(FN313732|pid:none) Schistosoma japonicum isolate Anhu... 45 0.001
AY811235_1(AY811235|pid:none) Schistosoma japonicum SJCHGC03882 ... 45 0.001
AE014187_405(AE014187|pid:none) Plasmodium falciparum 3D7 chromo... 35 1.1
DQ927305_30(DQ927305|pid:none) Tetrahymena pigmentosa strain UM1... 34 2.5
AM423881_1(AM423881|pid:none) Vitis vinifera contig VV78X251878.... 34 2.5
BX842626_11(BX842626|pid:none) Neurospora crassa DNA linkage gro... 34 2.5
CP000879_680(CP000879|pid:none) Petrotoga mobilis SJ95, complete... 33 3.3
AM910996_125(AM910996|pid:none) Plasmodium knowlesi strain H chr... 33 5.6
AY485268_1(AY485268|pid:none) Toxoplasma gondii sodium/hydrogen ... 32 7.3
FM162570_9(FM162570|pid:none) Trypanosoma brucei Lister 427 surf... 32 7.3
AY955840_12(AY955840|pid:none) Paracoccidioides brasiliensis str... 32 9.5

>AM463463_1(AM463463|pid:none) Vitis vinifera contig VV78X222111.4,
whole genome shotgun sequence.
Length = 106

Score = 143 bits (360), Expect = 3e-33
Identities = 65/101 (64%), Positives = 76/101 (75%)
Frame = +3

Query: 87 LTGPSIICCLNCKTHLTLHDQLISKQFQGRHGTAFLFGTCSNITVGPSEDRTLTTGMHIV 266
LTGP + C NC+ H++LHD ++SK FQGRHG AFLF NI VGP EDR LTTG+H V
Sbjct: 4 LTGPRLYSCCNCRNHVSLHDDIVSKAFQGRHGRAFLFSHAMNIGVGPKEDRQLTTGLHTV 63

Query: 267 ADIYCIDCGETLGWKYEFAKEESQKYXVGKYILEKAKIQKE 389
ADI+C DC + LGWKYE A E SQKY GK+ILEK+KI KE
Sbjct: 64 ADIHCADCRQVLGWKYERAYEASQKYKEGKFILEKSKIVKE 104

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 724,908,965
Number of extensions: 13236581
Number of successful extensions: 34175
Number of sequences better than 10.0: 92
Number of HSP's gapped: 34150
Number of HSP's successfully gapped: 92
Length of query: 172
Length of database: 1,061,185,681
Length adjustment: 119
Effective length of query: 53
Effective length of database: 672,240,369
Effective search space: 35628739557
Effective search space used: 35628739557
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.90 gvh: 0.47 alm: 0.44 top: 0.40 tms: 0.00 mit: 0.40 mip: 0.08
nuc: 0.06 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: mitochondrial
24.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for Contig-U05076-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0