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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05042-1
Contig ID Contig-U05042-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U05042-1 (Contig-U05042-1Q) /CSM_Contig/Contig-U05042-1Q.Seq.d
TATTATAATAATAATAGTAATTATTATAATCTATAAGCTGGCTGGATACA
TAAAAATTTGAGTATTGTGGTGAAAAATAATTTTTTTTTGTACTGGTTGC
CTTCTTTTTTTTTTTCTTTTTATTTTAATGCAGTTTTTCTTAATAATGTA
TTTAAAAAAAAAAAAAAAATTTATAATTATTATAATTTCTATTTTTATTA
CTTTTTTATACTAATTATTAATTTTTTTTATTTTTTAAATTATTATTTTT
TTTATTTATTTATTTGAAAAAATACAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA
Gap no gap
Contig length 314
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 154064
End point 153750
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U05042
List of clone(s) 

est1=SSE666Z,1,315
Translated Amino Acid sequence 
yynnnsnyynl*AGWIHKNLSIVVKNNFFLYWLPSFFFSFYFNAVFLNNVFKKKKKIYNY
YNFYFYYFFILIINFFYFLNYYFFYLFI*kntkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
yynnnsnyynl*AGWIHKNLSIVVKNNFFLYWLPSFFFSFYFNAVFLNNVFKKKKKIYNY
YNFYFYYFFILIINFFYFLNYYFFYLFI*kntkkkkkkkkkkkk


Frame B:
iiiiiviiiiyklagyiki*vlw*kiiffctgcllffflfilmqfflimylkkkkkfiii
iisifitfly*lliffif*iiiffiylfekiqkkkkkkkkkkkk


Frame C:
l*****ll*siswldt*kfeycgek*fffvlvafffffflf*csfs**ci*kkkknl*ll
*flflllfytny*fflffkllfflfiylkkykkkkkkkkkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05042-1 (Contig-U05042-1Q)
/CSM_Contig/Contig-U05042-1Q.Seq.d
         (314 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05042-1 (Contig-U05042-1Q) /CSM_Contig/Conti...   159  2e-39
Contig-U14147-1 (Contig-U14147-1Q) /CSM_Contig/Conti...    44  9e-05
Contig-U14060-1 (Contig-U14060-1Q) /CSM_Contig/Conti...    44  9e-05
Contig-U09307-1 (Contig-U09307-1Q) /CSM_Contig/Conti...    44  9e-05
Contig-U11141-1 (Contig-U11141-1Q) /CSM_Contig/Conti...    42  3e-04
Contig-U11018-1 (Contig-U11018-1Q) /CSM_Contig/Conti...    42  3e-04
Contig-U09490-1 (Contig-U09490-1Q) /CSM_Contig/Conti...    42  3e-04
Contig-U09471-1 (Contig-U09471-1Q) /CSM_Contig/Conti...    42  3e-04
Contig-U06896-1 (Contig-U06896-1Q) /CSM_Contig/Conti...    42  3e-04
Contig-U13319-1 (Contig-U13319-1Q) /CSM_Contig/Conti...    40  0.001

>Contig-U05042-1 (Contig-U05042-1Q) /CSM_Contig/Contig-U05042-1Q.Seq.d
          Length = 314

 Score =  159 bits (80), Expect = 2e-39
 Identities = 80/80 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tattataataataatagtaattattataatctataagctggctggatacataaaaatttg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tattataataataatagtaattattataatctataagctggctggatacataaaaatttg 60

                              
Query: 61 agtattgtggtgaaaaataa 80
          ||||||||||||||||||||
Sbjct: 61 agtattgtggtgaaaaataa 80


 Score = 63.9 bits (32), Expect = 9e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 122 attttaatgcagtttttcttaataatgtattt 153
           ||||||||||||||||||||||||||||||||
Sbjct: 122 attttaatgcagtttttcttaataatgtattt 153


>Contig-U14147-1 (Contig-U14147-1Q) /CSM_Contig/Contig-U14147-1Q.Seq.d
          Length = 194

 Score = 44.1 bits (22), Expect = 9e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 5   ataataataatagtaattattataat 30
           ||||||||||||||||| ||||||||
Sbjct: 100 ataataataatagtaataattataat 125


 Score = 36.2 bits (18), Expect = 0.021
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                    
Query: 5  ataataataatagtaattattataat 30
          |||||||||||| |||| ||||||||
Sbjct: 70 ataataataataataataattataat 95


 Score = 30.2 bits (15), Expect = 1.3
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 2   attataataataata 16
           |||||||||||||||
Sbjct: 94  attataataataata 108


 Score = 28.2 bits (14), Expect = 5.2
 Identities = 23/26 (88%)
 Strand = Plus / Plus

                                     
Query: 5   ataataataatagtaattattataat 30
           |||||||||||| | || ||||||||
Sbjct: 76  ataataataataattataattataat 101


 Score = 28.2 bits (14), Expect = 5.2
 Identities = 23/26 (88%)
 Strand = Plus / Plus

                                     
Query: 5   ataataataatagtaattattataat 30
           |||||||||||  ||||||| |||||
Sbjct: 79  ataataataattataattataataat 104


>Contig-U14060-1 (Contig-U14060-1Q) /CSM_Contig/Contig-U14060-1Q.Seq.d
          Length = 573

 Score = 44.1 bits (22), Expect = 9e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 5   ataataataatagtaattattataat 30
           |||||||||||| |||||||||||||
Sbjct: 512 ataataataataataattattataat 537


 Score = 30.2 bits (15), Expect = 1.3
 Identities = 21/23 (91%)
 Strand = Plus / Plus

                                  
Query: 5   ataataataatagtaattattat 27
           |||||||||||| |||| |||||
Sbjct: 509 ataataataataataataattat 531


 Score = 28.2 bits (14), Expect = 5.2
 Identities = 23/26 (88%)
 Strand = Plus / Plus

                                     
Query: 5   ataataataatagtaattattataat 30
           |||||||||||| |||| || |||||
Sbjct: 461 ataataataataataataataataat 486


 Score = 28.2 bits (14), Expect = 5.2
 Identities = 23/26 (88%)
 Strand = Plus / Plus

                                     
Query: 5   ataataataatagtaattattataat 30
           |||||||||||| |||| || |||||
Sbjct: 464 ataataataataataataataataat 489


 Score = 28.2 bits (14), Expect = 5.2
 Identities = 23/26 (88%)
 Strand = Plus / Plus

                                     
Query: 5   ataataataatagtaattattataat 30
           |||||||||||| |||| || |||||
Sbjct: 467 ataataataataataataataataat 492


 Score = 28.2 bits (14), Expect = 5.2
 Identities = 23/26 (88%)
 Strand = Plus / Plus

                                     
Query: 5   ataataataatagtaattattataat 30
           |||||||||||| |||| || |||||
Sbjct: 482 ataataataataataataataataat 507


 Score = 28.2 bits (14), Expect = 5.2
 Identities = 23/26 (88%)
 Strand = Plus / Plus

                                     
Query: 5   ataataataatagtaattattataat 30
           |||||||||||| |||| || |||||
Sbjct: 488 ataataataataataataataataat 513


 Score = 28.2 bits (14), Expect = 5.2
 Identities = 23/26 (88%)
 Strand = Plus / Plus

                                     
Query: 5   ataataataatagtaattattataat 30
           |||||||||||| |||| || |||||
Sbjct: 455 ataataataataataataataataat 480


 Score = 28.2 bits (14), Expect = 5.2
 Identities = 23/26 (88%)
 Strand = Plus / Plus

                                     
Query: 5   ataataataatagtaattattataat 30
           |||||||||||| |||| || |||||
Sbjct: 491 ataataataataataataataataat 516


 Score = 28.2 bits (14), Expect = 5.2
 Identities = 23/26 (88%)
 Strand = Plus / Plus

                                     
Query: 5   ataataataatagtaattattataat 30
           |||||||||||| |||| || |||||
Sbjct: 497 ataataataataataataataataat 522


 Score = 28.2 bits (14), Expect = 5.2
 Identities = 23/26 (88%)
 Strand = Plus / Plus

                                     
Query: 5   ataataataatagtaattattataat 30
           |||||||||||| |||| || |||||
Sbjct: 494 ataataataataataataataataat 519


 Score = 28.2 bits (14), Expect = 5.2
 Identities = 23/26 (88%)
 Strand = Plus / Plus

                                     
Query: 5   ataataataatagtaattattataat 30
           |||||||||||| |||| || |||||
Sbjct: 470 ataataataataataataataataat 495


 Score = 28.2 bits (14), Expect = 5.2
 Identities = 23/26 (88%)
 Strand = Plus / Plus

                                     
Query: 5   ataataataatagtaattattataat 30
           |||||||||||| |||| || |||||
Sbjct: 500 ataataataataataataataataat 525


 Score = 28.2 bits (14), Expect = 5.2
 Identities = 23/26 (88%)
 Strand = Plus / Plus

                                     
Query: 5   ataataataatagtaattattataat 30
           |||||||||||| |||| || |||||
Sbjct: 503 ataataataataataataataataat 528


 Score = 28.2 bits (14), Expect = 5.2
 Identities = 23/26 (88%)
 Strand = Plus / Plus

                                     
Query: 5   ataataataatagtaattattataat 30
           |||||||||||| |||| || |||||
Sbjct: 458 ataataataataataataataataat 483


 Score = 28.2 bits (14), Expect = 5.2
 Identities = 23/26 (88%)
 Strand = Plus / Plus

                                     
Query: 5   ataataataatagtaattattataat 30
           |||||||||||| |||| || |||||
Sbjct: 479 ataataataataataataataataat 504


 Score = 28.2 bits (14), Expect = 5.2
 Identities = 23/26 (88%)
 Strand = Plus / Plus

                                     
Query: 5   ataataataatagtaattattataat 30
           |||||||||||| |||| || |||||
Sbjct: 485 ataataataataataataataataat 510


 Score = 28.2 bits (14), Expect = 5.2
 Identities = 23/26 (88%)
 Strand = Plus / Plus

                                     
Query: 5   ataataataatagtaattattataat 30
           |||||||||||| |||| || |||||
Sbjct: 473 ataataataataataataataataat 498


 Score = 28.2 bits (14), Expect = 5.2
 Identities = 23/26 (88%)
 Strand = Plus / Plus

                                     
Query: 5   ataataataatagtaattattataat 30
           |||||||||||| |||| || |||||
Sbjct: 476 ataataataataataataataataat 501


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,331
Number of Sequences: 6905
Number of extensions: 13331
Number of successful extensions: 5704
Number of sequences better than 10.0: 938
length of query: 314
length of database: 5,674,871
effective HSP length: 15
effective length of query: 299
effective length of database: 5,571,296
effective search space: 1665817504
effective search space used: 1665817504
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7. 9
Homology vs DNA 
Query= Contig-U05042-1 (Contig-U05042-1Q) /CSM_Contig/Contig-U05042-1Q.Seq.d
         (314 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C84706) Dictyostelium discoideum slug cDNA, clone SSE666.        159   6e-37  2
(EI923505) VUH2-59N15TV VUUBBa (VUH2) Vigna unguiculata geno...    54   0.003  1
(FG907161) UCRVU08_CCNS4983_g1 Cowpea IT97K-461-4 Mixed Tiss...    54   0.003  1
(CR388170) Zebrafish DNA sequence from clone CH211-87E4 in l...    52   0.013  1
(BX276086) Zebrafish DNA sequence from clone CH211-114C9 in ...    52   0.013  1
(BX255904) Zebrafish DNA sequence from clone DKEY-15J16 in l...    52   0.013  1
(AY955840) Paracoccidioides brasiliensis strain Pb18 mitocho...    52   0.013  1
(FH064777) CHO_OF3597xj01r1.ab1 CHO_OF3 Nicotiana tabacum ge...    52   0.013  1
(ET090104) QM0AAA14DG02RM1 CCL1 Citrus clementina genomic cl...    52   0.013  1
(AQ069521) HS_2267_B2_A01_MF CIT Approved Human Genomic Sper...    52   0.013  1
(DX487871) Cpl29648 Papaya Genomic DNA BAC Library Carica pa...    52   0.013  1
(GO999744) CCIG14814.g1 CCIG Mimulus guttatus DUN10 floral b...    52   0.013  1
(GO966827) CCIH5258.g1 CCIH Mimulus nasutus SF floral buds (...    52   0.013  1
(GO956588) CCII8385.g1 CCII Mimulus nasutus SF floral buds (...    52   0.013  1
(GO954471) CCII7222.g1 CCII Mimulus nasutus SF floral buds (...    52   0.013  1
(GO951280) CCII5461.g1 CCII Mimulus nasutus SF floral buds (...    52   0.013  1
(GO948636) CCII3979.g1 CCII Mimulus nasutus SF floral buds (...    52   0.013  1
(BX296530) Zebrafish DNA sequence from clone DKEY-22H2 in li...    34   0.033  2
(DE554862) Bombyx mori genomic DNA, Fosmid clone:GBMFno192_i...    36   0.042  2
(CR391974) Zebrafish DNA sequence from clone CH211-59E10 in ...    50   0.051  1
(CT010467) Mouse DNA sequence from clone RP23-81C12 on chrom...    50   0.051  1
(AC123740) Mus musculus chromosome 17, clone RP24-94I20, com...    50   0.051  1
(AC114258) Dictyostelium discoideum chromosome 2 map complem...    50   0.051  1
(AL162719) Human DNA sequence from clone RP11-461D23 on chro...    50   0.051  1
(AC090684) Homo sapiens chromosome 18, clone RP11-409K17, co...    50   0.051  1
(AC018994) Homo sapiens chromosome 18, clone RP11-619L19, co...    50   0.051  1
(AC181433) Strongylocentrotus purpuratus clone R3-50H18, WOR...    50   0.051  1
(AC175953) Strongylocentrotus purpuratus clone R3-17D21, WOR...    50   0.051  1
(AC175842) Strongylocentrotus purpuratus clone R3-15L24, WOR...    50   0.051  1
(AL610346) Anopheles gambiae GSS T7 end of clone 23I07 of li...    50   0.051  1
(EI942711) VUH2-90B6TR VUUBBa (VUH2) Vigna unguiculata genom...    50   0.051  1
(GO140557) CAGA29002.fwd CAGA Alvinella pompejana Normalized...    50   0.051  1
(GO140556) CAGA29002.rev CAGA Alvinella pompejana Normalized...    50   0.051  1
(EY338507) CAWY9056.rev CAWY Helobdella robusta Subtracted E...    50   0.051  1
(CR626942) Zebrafish DNA sequence from clone DKEY-189F18 in ...    48   0.20   1
(CR450735) Zebrafish DNA sequence from clone CH211-274B17 in...    48   0.20   1
(CR388420) Zebrafish DNA sequence from clone DKEY-37H18 in l...    48   0.20   1
(BX324198) Zebrafish DNA sequence from clone CH211-108M2 in ...    48   0.20   1
(BX255931) Zebrafish DNA sequence from clone CH211-195B2 in ...    48   0.20   1
(AL929135) Zebrafish DNA sequence from clone CH211-125A22 in...    48   0.20   1
(AL845444) Zebrafish DNA sequence from clone DKEY-12F4 in li...    48   0.20   1
(AC152062) Mus musculus BAC clone RP23-341K9 from chromosome...    48   0.20   1
(AC125535) Mus musculus BAC clone RP24-69I6 from chromosome ...    48   0.20   1
(AC146691) Macaca mulatta clone ch250-214a10, complete seque...    48   0.20   1
(X57546) K.lactis mitochondrial COX1 and A8 genes for cytoch...    48   0.20   1
(AY654900) Kluyveromyces lactis mitochondrion, complete genome.    48   0.20   1
(AY562119) Corchorus olitorius clone COG-001 simple sequence...    48   0.20   1
(GM887722) Sequence 189 from Patent WO2008137089.                  48   0.20   1
(GM887654) Sequence 121 from Patent WO2008137089.                  48   0.20   1
(EF493954) Ortilia velica voucher NW106-5 cytochrome oxidase...    48   0.20   1
(EF493953) Ortilia velica voucher NW114-7 cytochrome oxidase...    48   0.20   1
(EF493952) Ortilia orticas voucher NW128-29 cytochrome oxida...    48   0.20   1
(EF493951) Ortilia orthia voucher NW124-14 cytochrome oxidas...    48   0.20   1
(EF493948) Ortilia dicoma voucher NW124-13 cytochrome oxidas...    48   0.20   1
(AL844509) Plasmodium falciparum 3D7 chromosome 13.                48   0.20   1
(AC090662) Homo sapiens chromosome 11, clone RP11-184J19, co...    48   0.20   1
(AC079361) Homo sapiens 11 BAC RP11-184J19 (Roswell Park Can...    48   0.20   1
(AC078878) Homo sapiens 12 BAC RP11-983C2 (Roswell Park Canc...    48   0.20   1
(AC015805) Homo sapiens chromosome , clone RP11-128I14, comp...    48   0.20   1
(AC009549) Homo sapiens chromosome 11, clone RP11-359E10, co...    48   0.20   1
(AC114252) Rattus norvegicus clone CH230-344F13, WORKING DRA...    48   0.20   1
(AC111690) Rattus norvegicus clone CH230-66N22, WORKING DRAF...    48   0.20   1
(CU855898) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.20   1
(AC073680) Mus musculus clone RP23-116M1, WORKING DRAFT SEQU...    48   0.20   1
(CU462876) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.20   1
(CT573352) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.20   1
(CR354376) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.20   1
(BX927228) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.20   1
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    48   0.20   1
(AC218892) Callorhinchus milii clone 161D4, WORKING DRAFT SE...    48   0.20   1
(AC020640) Homo sapiens chromosome 12 clone RP11-205M16, WOR...    48   0.20   1
(AC007675) Homo sapiens clone RP11-47A16, WORKING DRAFT SEQU...    48   0.20   1
(AY809536) Schistosoma japonicum SJCHGC06716 protein mRNA, p...    48   0.20   1
(FI266769) CccaBb064-M7JR CccABb Cajanus cajan genomic clone...    48   0.20   1
(FI249869) CccaBb013-J14JR CccABb Cajanus cajan genomic clon...    48   0.20   1
(FI234268) CccaBb023-E13JF CccABb Cajanus cajan genomic clon...    48   0.20   1
(FI203533) CccaBa004-K10TV CccABa Cajanus cajan genomic clon...    48   0.20   1
(AL976180) Danio rerio genomic clone DKEY-102J22, genomic su...    48   0.20   1
(AL429182) clone BA0AB030C03 of library BA0AB from strain CL...    48   0.20   1
(B00572) cSRL-116b3-u cSRL flow sorted Chromosome 11 specifi...    48   0.20   1
(CV758083) sjl9-004_E06_sjl9-004E06-T7_050.ab1 SJL Schistoso...    48   0.20   1
(CR956630) Zebrafish DNA sequence from clone CH73-141B18 in ...    38   0.46   3
(AC147501) Medicago truncatula chromosome 8 clone mth2-12n2,...    46   0.48   2
(AL929188) Zebrafish DNA sequence from clone CH211-273O6 in ...    40   0.51   2
(AC121883) Mus musculus BAC clone RP24-137J17 from 1, comple...    46   0.61   2
(CU468271) Zebrafish DNA sequence from clone CH73-350K19 in ...    46   0.63   2
(AC163690) Mus musculus BAC clone RP23-470F9 from chromosome...    46   0.69   2
(FP101862) Zebrafish DNA sequence from clone CH73-147N15 in ...    46   0.80   1
(CU928063) Zebrafish DNA sequence from clone CH73-97E20 in l...    46   0.80   1
(CU914144) Zebrafish DNA sequence from clone ZFOS-1056B4 in ...    46   0.80   1
(CU914143) Zebrafish DNA sequence from clone CH211-39D24 in ...    46   0.80   1
(CU694363) Zebrafish DNA sequence from clone ZFOS-659F11.          46   0.80   1
(CU694269) Zebrafish DNA sequence from clone CH73-169F6 in l...    46   0.80   1
(CU651669) Zebrafish DNA sequence from clone CH1073-266P11 C...    46   0.80   1
(CU468684) Zebrafish DNA sequence from clone CH73-1M8 in lin...    46   0.80   1
(CU468042) Zebrafish DNA sequence from clone DKEY-168F7 in l...    46   0.80   1
(CU467615) Zebrafish DNA sequence from clone CH211-125L3 in ...    46   0.80   1
(CU207238) Zebrafish DNA sequence from clone CH211-221G5 in ...    46   0.80   1
(CU179730) Zebrafish DNA sequence from clone CH211-186I18 in...    46   0.80   1
(CU104752) Zebrafish DNA sequence from clone CH73-343M19 in ...    46   0.80   1
(CU104732) Zebrafish DNA sequence from clone CH73-226D12 in ...    46   0.80   1
(CT737172) Zebrafish DNA sequence from clone DKEY-284O11 in ...    46   0.80   1
(CT583670) Zebrafish DNA sequence from clone CH211-268F14 in...    46   0.80   1
(CT574583) Zebrafish DNA sequence from clone CH211-123J21 in...    46   0.80   1
(CT573338) Zebrafish DNA sequence from clone DKEY-3A9 in lin...    46   0.80   1
(CT573116) Zebrafish DNA sequence from clone CH73-31N19 in l...    46   0.80   1
(CT030207) Zebrafish DNA sequence from clone CH211-176G6 in ...    46   0.80   1
(CT027552) Zebrafish DNA sequence from clone DKEY-7C22 in li...    46   0.80   1
(CT025874) Zebrafish DNA sequence from clone DKEY-170I22 in ...    46   0.80   1
(CT025718) Zebrafish DNA sequence from clone CH73-129N6 in l...    46   0.80   1
(CR936518) Zebrafish DNA sequence from clone DKEY-27E18 in l...    46   0.80   1
(CR931759) Zebrafish DNA sequence from clone DKEYP-39E9 in l...    46   0.80   1
(CR925755) Zebrafish DNA sequence from clone CH211-138M24 in...    46   0.80   1
(CR925718) Zebrafish DNA sequence from clone CH211-287A22 in...    46   0.80   1
(CR855335) Zebrafish DNA sequence from clone CH211-171A1 in ...    46   0.80   1
(CR855273) Zebrafish DNA sequence from clone DKEYP-34E1 in l...    46   0.80   1
(CR854894) Zebrafish DNA sequence from clone DKEY-202K20 in ...    46   0.80   1
(CR392021) Zebrafish DNA sequence from clone CH211-126H20 in...    46   0.80   1
(CR391949) Zebrafish DNA sequence from clone CH211-149B20 in...    46   0.80   1
(CR391919) Zebrafish DNA sequence from clone DKEY-174K18 in ...    46   0.80   1
(CR388079) Zebrafish DNA sequence from clone DKEY-29F21 in l...    46   0.80   1
(CR388056) Zebrafish DNA sequence from clone DKEY-224F11 in ...    46   0.80   1
(CR388016) Zebrafish DNA sequence from clone DKEY-106M5 in l...    46   0.80   1
(CR384108) Zebrafish DNA sequence from clone DKEYP-26H11 in ...    46   0.80   1
(CR381644) Zebrafish DNA sequence from clone CH211-80A15 in ...    46   0.80   1
(CR356236) Zebrafish DNA sequence from clone CH211-251P4 in ...    46   0.80   1
(CR318629) Zebrafish DNA sequence from clone DKEY-30I24 in l...    46   0.80   1
(CR318608) Zebrafish DNA sequence from clone CH211-250G5 in ...    46   0.80   1
(CR293531) Zebrafish DNA sequence from clone DKEY-125H23 in ...    46   0.80   1
(BX936447) Zebrafish DNA sequence from clone DKEY-13D5 in li...    46   0.80   1
(BX927282) Zebrafish DNA sequence from clone DKEY-49O11 in l...    46   0.80   1
(BX890591) Zebrafish DNA sequence from clone DKEY-184J23 in ...    46   0.80   1
(BX890571) Zebrafish DNA sequence from clone CH211-57F7 in l...    46   0.80   1
(BX649292) Zebrafish DNA sequence from clone DKEY-39E8 in li...    46   0.80   1
(BX572639) Zebrafish DNA sequence from clone CH211-209J5 in ...    46   0.80   1
(BX571899) Zebrafish DNA sequence from clone DKEY-256I3 in l...    46   0.80   1
(BX569787) Zebrafish DNA sequence from clone CH211-208H1 in ...    46   0.80   1
(BX548160) Zebrafish DNA sequence from clone DKEY-25G11 in l...    46   0.80   1
(BX548002) Zebrafish DNA sequence from clone CH211-170I2 in ...    46   0.80   1
(BX537293) Zebrafish DNA sequence from clone DKEYP-40D11 in ...    46   0.80   1
(BX511003) Zebrafish DNA sequence from clone CH211-69F16 in ...    46   0.80   1
(BX510920) Zebrafish DNA sequence from clone DKEY-30J22 in l...    46   0.80   1
(BX510919) Zebrafish DNA sequence from clone DKEY-164K19 in ...    46   0.80   1
(BX465185) Zebrafish DNA sequence from clone CH211-39F23 in ...    46   0.80   1
(BX322643) Zebrafish DNA sequence from clone CH211-281E1 in ...    46   0.80   1
(BX294122) Zebrafish DNA sequence from clone DKEYP-6A12 in l...    46   0.80   1
(BX276111) Zebrafish DNA sequence from clone CH211-258H7 in ...    46   0.80   1
(BX248499) Zebrafish DNA sequence from clone CH211-284A13 in...    46   0.80   1
(BX247899) Zebrafish DNA sequence from clone CH211-229B6 in ...    46   0.80   1
(BX119910) Zebrafish DNA sequence from clone DKEY-17C10 in l...    46   0.80   1
(BX072534) Zebrafish DNA sequence from clone DKEY-16C1.            46   0.80   1
(BX005353) Zebrafish DNA sequence from clone DKEY-28D10.           46   0.80   1
(BX005071) Zebrafish DNA sequence from clone CH211-139O14 in...    46   0.80   1
(BX005032) Zebrafish DNA sequence from clone CH211-180P9 in ...    46   0.80   1
(BX004993) Zebrafish DNA sequence from clone CH211-163C2 in ...    46   0.80   1
(BX004881) Zebrafish DNA sequence from clone CH211-141M16 in...    46   0.80   1
(BX004853) Zebrafish DNA sequence from clone DKEY-13O11.           46   0.80   1
(BX000997) Zebrafish DNA sequence from clone CH211-151C7 in ...    46   0.80   1
(BX000697) Zebrafish DNA sequence from clone CH211-120M13 in...    46   0.80   1
(BX000521) Zebrafish DNA sequence from clone CH211-137C8 in ...    46   0.80   1
(AL954841) Zebrafish DNA sequence from clone DKEY-3B8 in lin...    46   0.80   1
(AL953858) Zebrafish DNA sequence from clone CH211-121H11 in...    46   0.80   1
(AL935202) Zebrafish DNA sequence from clone CH211-197E11 in...    46   0.80   1
(AL929220) Zebrafish DNA sequence from clone DKEY-65B13 in l...    46   0.80   1
(AL929216) Zebrafish DNA sequence from clone CH211-138G9 in ...    46   0.80   1
(AL929013) Zebrafish DNA sequence from clone DKEY-77O15.           46   0.80   1
(AL807378) Zebrafish DNA sequence from clone CH211-215A18 in...    46   0.80   1
(AL773598) Zebrafish DNA sequence from clone CH211-207G4.          46   0.80   1
(AL606809) Zebrafish DNA sequence from clone BUSM1-71J22 in ...    46   0.80   1
(AL928919) Mouse DNA sequence from clone RP24-239N23 on chro...    46   0.80   1
(AL844604) Mouse DNA sequence from clone RP24-318C20 on chro...    46   0.80   1
(AL773520) Mouse DNA sequence from clone RP23-350F23 on chro...    46   0.80   1
(AL772320) Mouse DNA sequence from clone RP23-346F2 on chrom...    46   0.80   1
(AC165294) Mus musculus BAC clone RP23-115J11 from chromosom...    46   0.80   1
(AC164085) Mus musculus BAC clone RP23-205G24 from chromosom...    46   0.80   1
(AC164084) Mus musculus BAC clone RP23-15P15 from chromosome...    46   0.80   1
(AC163611) Mus musculus BAC clone RP23-86K21 from chromosome...    46   0.80   1
(AC160115) Mus musculus BAC clone RP23-473K23 from chromosom...    46   0.80   1
(AC158792) Mus musculus chromosome 3, clone RP23-300L15, com...    46   0.80   1
(AC157363) Mus musculus chromosome 1, clone RP23-478L14, com...    46   0.80   1
(AC147261) Mus musculus BAC clone RP24-288A1 from 5, complet...    46   0.80   1
(AC141645) Mus musculus BAC clone RP23-109K22 from chromosom...    46   0.80   1
(AC141484) Mus musculus BAC clone RP23-67A20 from chromosome...    46   0.80   1
(AC140444) Mus musculus BAC clone RP23-57N5 from chromosome ...    46   0.80   1
(AC134841) Mus musculus BAC clone RP24-372K3 from 5, complet...    46   0.80   1
(AC134584) Mus musculus BAC clone RP23-299M6 from 5, complet...    46   0.80   1
(AC133196) Mus musculus BAC clone RP23-173B14 from 5, comple...    46   0.80   1
(AC133095) Mus musculus BAC clone RP23-270E19 from 5, comple...    46   0.80   1
(AC132833) Mus musculus chromosome 15, clone RP24-498G7, com...    46   0.80   1
(AC130832) Mus musculus BAC clone RP24-85B14 from chromosome...    46   0.80   1
(AC129555) Mus musculus chromosome 5, clone RP24-90F19, comp...    46   0.80   1
(AC129193) Mus musculus BAC clone RP24-136L12 from chromosom...    46   0.80   1
(AC126241) Mus musculus chromosome UL clone RP24-248P10, com...    46   0.80   1
(AC126035) Mus musculus chromosome UNKNOWN clone RP24-122B7,...    46   0.80   1
(AC125382) Mus musculus BAC clone RP23-365E3 from chromosome...    46   0.80   1
(AC125197) Mus musculus BAC clone RP23-249A1 from 5, complet...    46   0.80   1
(AC125178) Mus musculus chromosome UNKNOWN clone RP23-319L16...    46   0.80   1
(AC125068) Mus musculus chromosome UNKNOWN clone RP23-432M17...    46   0.80   1
(AC124606) Mus musculus BAC clone RP23-82D2 from chromosome ...    46   0.80   1
(AC124599) Mus musculus chromosome UL clone RP23-24D13, comp...    46   0.80   1
(AC124575) Mus musculus BAC clone RP23-162F11 from chromosom...    46   0.80   1
(AC123873) Mus musculus chromosome UNKNOWN clone RP23-261G21...    46   0.80   1
(AC121987) Mus musculus BAC clone RP24-294E6 from 9, complet...    46   0.80   1
(AC117728) Mus musculus chromosome 6, clone RP24-126C21, com...    46   0.80   1
(AC117715) Mus musculus chromosome 7, clone RP23-62M19, comp...    46   0.80   1
(AC116797) Mus musculus chromosome 13, clone RP24-327I15, co...    46   0.80   1
(AC111122) Mus musculus chromosome 7, clone RP23-230L8, comp...    46   0.80   1
(AC104414) Mus musculus chromosome 3, clone RP23-99I7, compl...    46   0.80   1
(AC103945) Mus musculus chromosome 3, clone RP23-126A18, com...    46   0.80   1
(AC102217) Mus musculus chromosome 1, clone RP24-160A23, com...    46   0.80   1
(AY589042) Gorilla gorilla breast cancer type 1 (BRCA1) gene...    46   0.80   1
(AY365046) Pan troglodytes BRCA1 (BRCA1) gene, complete cds.       46   0.80   1
(AC191438) Rhesus Macaque  BAC CH250-264K21 () complete sequ...    46   0.80   1
(CT027664) Medicago truncatula chromosome 5 clone mth2-160e5...    46   0.80   1
(CT027663) Medicago truncatula chromosome 5 clone mth2-139g2...    46   0.80   1
(AP011072) Solanum lycopersicum DNA, chromosome 8, clone: C0...    46   0.80   1
(AP010260) Solanum lycopersicum DNA, chromosome 8, clone: C0...    46   0.80   1
(AP009604) Solanum lycopersicum DNA, chromosome 8, clone: C0...    46   0.80   1
(AM484801) Vitis vinifera contig VV78X066557.4, whole genome...    46   0.80   1
(AM484560) Vitis vinifera contig VV78X144496.6, whole genome...    46   0.80   1
(AM473287) Vitis vinifera contig VV79X001558.1, whole genome...    46   0.80   1
(AM472168) Vitis vinifera, whole genome shotgun sequence, co...    46   0.80   1
(AM467517) Vitis vinifera contig VV78X051988.6, whole genome...    46   0.80   1
(AM453206) Vitis vinifera, whole genome shotgun sequence, co...    46   0.80   1
(AM447674) Vitis vinifera contig VV78X062106.21, whole genom...    46   0.80   1
(AM431293) Vitis vinifera contig VV78X114116.7, whole genome...    46   0.80   1
(AC235292) Glycine max strain Williams 82 clone GM_WBb0058N0...    46   0.80   1
(AC235160) Glycine max strain Williams 82 clone GM_WBa0097L0...    46   0.80   1
(AC173288) Medicago truncatula chromosome 2 BAC clone mth2-1...    46   0.80   1
(AC137065) Medicago truncatula clone mth2-29h7, complete seq...    46   0.80   1
(DL005651) NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES.     46   0.80   1
(CS467917) Sequence 81 from Patent WO2006004597.                   46   0.80   1
(CS459576) Sequence 57 from Patent WO2006117596.                   46   0.80   1
(CS351237) Sequence 621 from Patent WO2006013561.                  46   0.80   1
(CQ776448) Sequence 134 from Patent EP1394274.                     46   0.80   1
(BD446750) Method for testing for broncheal asthma, or chron...    46   0.80   1
(AX356424) Sequence 58 from Patent WO0181622.                      46   0.80   1
(GM883662) Sequence 6 from Patent WO2008137090.                    46   0.80   1
(GC702092) Sequence 17337 from patent US 6812339.                  46   0.80   1
(GC702091) Sequence 17336 from patent US 6812339.                  46   0.80   1
(GC702090) Sequence 17335 from patent US 6812339.                  46   0.80   1
(GC702089) Sequence 17334 from patent US 6812339.                  46   0.80   1
(GC697423) Sequence 12668 from patent US 6812339.                  46   0.80   1
(GC697422) Sequence 12667 from patent US 6812339.                  46   0.80   1
(GC697421) Sequence 12666 from patent US 6812339.                  46   0.80   1
(GC697420) Sequence 12665 from patent US 6812339.                  46   0.80   1
(DQ270785) Mustela vison clone II4I15 microsatellite Mvi4022...    46   0.80   1
(AC151770) Ornithorhynchus anatinus chromosome UNK clone OAB...    46   0.80   1
(EU717565) Kikihia sp. 'westlandica south' voucher 02.NC.APV...    46   0.80   1
(EF051443) Kikihia sp. 'westlandica south' tRNA-Asx gene, pa...    46   0.80   1
(EF051440) Kikihia scutellaris tRNA-Asx gene, partial sequen...    46   0.80   1
(EF051437) Kikihia paxillulae tRNA-Asx gene, partial sequenc...    46   0.80   1
(EF051432) Kikihia murihikua tRNA-Asx gene, partial sequence...    46   0.80   1
(AY691418) Paracoccus nothofagicola cytochrome b (cytb) gene...    46   0.80   1
(AL844508) Plasmodium falciparum 3D7 chromosome 9.                 46   0.80   1
(AL844505) Plasmodium falciparum 3D7 chromosome 6.                 46   0.80   1
(AL844503) Plasmodium falciparum 3D7 chromosome 4.                 46   0.80   1
(AF349485) Kikihia scutellaris ATPase subunit 8 gene, partia...    46   0.80   1
(AF349476) Kikihia paxillulae ATPase subunit 8 gene, partial...    46   0.80   1
(AF248819) Kikihia scutellaris tRNA-Asp gene, complete seque...    46   0.80   1
(AC186774) Trichinella spiralis chromosome UNK clone TS195-1...    46   0.80   1
(L78833) Homo sapiens BRCA1 (BRCA1) gene, complete cds; ribo...    46   0.80   1
(DQ478408) Homo sapiens neighbor of BRCA1 gene 1 (NBR1) gene...    46   0.80   1
(DQ190457) Homo sapiens clone mck41_A neighbor of BRCA1 gene...    46   0.80   1
(DQ190456) Homo sapiens clone mck578_U neighbor of BRCA1 gen...    46   0.80   1
(DQ190455) Homo sapiens clone mck554_A neighbor of BRCA1 gen...    46   0.80   1
(DQ190454) Homo sapiens clone mck43_A neighbor of BRCA1 gene...    46   0.80   1
(DQ190453) Homo sapiens clone mck55_A neighbor of BRCA1 gene...    46   0.80   1
(DQ190452) Homo sapiens clone mck94_A neighbor of BRCA1 gene...    46   0.80   1
(DQ190451) Homo sapiens clone mck47_A neighbor of BRCA1 gene...    46   0.80   1
(DQ190450) Homo sapiens clone mck432_A neighbor of BRCA1 gen...    46   0.80   1
(AY273801) Homo sapiens breast cancer 1, early onset (BRCA1)...    46   0.80   1
(AP002478) Homo sapiens genomic DNA, chromosome 18 clone:RP1...    46   0.80   1
(AL713888) Human DNA sequence from clone RP11-524O24 on chro...    46   0.80   1
(AL354932) Human DNA sequence from clone RP11-117L21 on chro...    46   0.80   1
(AC135721) Homo sapiens, clone CTD-3199J23, complete sequence.     46   0.80   1
(AC091100) Homo sapiens chromosome 15, clone RP11-593F23, co...    46   0.80   1
(AC084880) Homo sapiens 12 BAC RP11-64B16 (Roswell Park Canc...    46   0.80   1
(AC079068) Homo sapiens chromosome 15, clone RP11-90A19, com...    46   0.80   1
(AC021039) Homo sapiens chromosome 10 clone RP11-478K18, com...    46   0.80   1
(AC011491) Homo sapiens chromosome 19 clone CTB-180A7, compl...    46   0.80   1
(AC159358) Bos taurus clone CH240-21P21, WORKING DRAFT SEQUE...    46   0.80   1
(AC153744) Ornithorhynchus anatinus clone OA_Bb-401P11, WORK...    46   0.80   1
(AC151442) Atelerix albiventris clone LB4-211A8, WORKING DRA...    46   0.80   1
(AC148056) Atelerix albiventris clone LB4-61H11, WORKING DRA...    46   0.80   1
(AC147509) Mus musculus chromosome 7 clone RP23-14K10 map 7,...    46   0.80   1
(AC126446) Mus musculus chromosome UNK clone RP23-326H22, WO...    46   0.80   1
(AC118169) Rattus norvegicus clone CH230-404J17, *** SEQUENC...    46   0.80   1
(AC115646) Rattus norvegicus clone CH230-290I1, *** SEQUENCI...    46   0.80   1
(AC111471) Rattus norvegicus clone CH230-79F18, *** SEQUENCI...    46   0.80   1
(AC102325) Mus musculus clone RP24-482P14, WORKING DRAFT SEQ...    46   0.80   1
(FP236802) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(FP236322) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(FP236321) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(FP102938) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(FP102866) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(FP067411) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(CU993815) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(CU929335) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(CU929334) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(CU929234) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(CU928524) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.80   1
(CU914682) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.80   1
(CU914359) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.80   1
(CU914226) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.80   1
(CU695002) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(CU694562) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.80   1
(CU682601) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(CU682351) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   0.80   1
(CU672233) M.truncatula DNA sequence *** SEQUENCING IN PROGR...    46   0.80   1
(CU638669) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.80   1
(CU469549) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   0.80   1
(AC094131) Rattus norvegicus clone CH230-3D12, *** SEQUENCIN...    46   0.80   1
(AC091028) Homo sapiens chromosome 15 clone CTD-2005H10 map ...    46   0.80   1
(AC087464) Homo sapiens chromosome 15 clone RP11-84B6 map 15...    46   0.80   1
(AC072035) Homo sapiens chromosome 3 clone RP11-445C21, WORK...    46   0.80   1
(CU468013) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   0.80   1
(CU463977) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(CU207268) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(CU013528) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(CT573441) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(CT573195) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(CT573162) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   0.80   1
(CT027725) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(CR956407) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(CR954227) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(CR931727) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(CR854885) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(CR847866) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(CR547124) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(CR450774) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   0.80   1
(BX950221) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(BX927305) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(BX324140) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.80   1
(AP007796) Lotus japonicus genomic DNA, chromosome 4, clone:...    46   0.80   1
(AC233462) Solanum tuberosum chromosome 5 clone RH093D20, **...    46   0.80   1
(AC233422) Solanum tuberosum chromosome 5 clone RH072M12, **...    46   0.80   1
(AC233366) Solanum tuberosum chromosome 5 clone RH027F15, **...    46   0.80   1
(AC232198) Ornithorhynchus anatinus clone OA_Bb-288I16, WORK...    46   0.80   1
(AC232196) Ornithorhynchus anatinus clone OA_Bb-143I21, WORK...    46   0.80   1
(AC231327) Monodelphis domestica clone VMRC18-689B3, WORKING...    46   0.80   1
(AC219203) Solanum lycopersicum chromosome 6 clone C06HBa001...    46   0.80   1
(AC206335) Pongo abelii chromosome UNKNOWN clone CH276-449L1...    46   0.80   1
(AC198297) Macaca mulatta clone CH250-511O13, WORKING DRAFT ...    46   0.80   1
(AC196909) Ornithorhynchus anatinus clone OA_Bb-453F21, WORK...    46   0.80   1
(AC195052) Ornithorhynchus anatinus clone OA_Bb-435A16, WORK...    46   0.80   1
(AC188907) Aotus nancymaae clone CH258-336F20, WORKING DRAFT...    46   0.80   1
(AC181068) Strongylocentrotus purpuratus clone R3-3050C7, WO...    46   0.80   1
(AC180817) Strongylocentrotus purpuratus clone R3-3071B04, W...    46   0.80   1
(AC180675) Strongylocentrotus purpuratus clone R3-3087J01, W...    46   0.80   1
(AC177134) Strongylocentrotus purpuratus clone R3-4014K7, WO...    46   0.80   1
(AC176978) Strongylocentrotus purpuratus clone R3-36F12, WOR...    46   0.80   1
(AC176053) Strongylocentrotus purpuratus clone R3-18P10, WOR...    46   0.80   1
(AC171957) Bos taurus clone CH240-232G1, WORKING DRAFT SEQUE...    46   0.80   1
(AC170213) Bos taurus clone CH240-256I13, WORKING DRAFT SEQU...    46   0.80   1
(AC168188) Atelerix albiventris clone LB4-43J15, WORKING DRA...    46   0.80   1
(AC166363) Mus musculus chromosome UNKNOWN clone RP23-195C13...    46   0.80   1
(AC021527) Homo sapiens chromosome 18 clone RP11-359P13 map ...    46   0.80   1
(AC009819) Homo sapiens clone RP11-322N7, WORKING DRAFT SEQU...    46   0.80   1
(AC007832) Homo sapiens chromosome 18 clone RP11-352L24 map ...    46   0.80   1
(AK259477) Gryllus bimaculatus mRNA, GBcontig06338.                46   0.80   1
(AZ928705) 479.dif17a09.s1 Saccharomyces kluyveri Lachancea ...    46   0.80   1
(AZ378765) 1M0133K11R Mouse 10kb plasmid UUGC1M library Mus ...    46   0.80   1
(AZ372945) 1M0125G06F Mouse 10kb plasmid UUGC1M library Mus ...    46   0.80   1
(AZ144803) SP_0006_B2_H02_T7 Strongylocentrotus purpuratus, ...    46   0.80   1
(FT110845) Rattus norvegicus DNA, BAC clone: RNB2-285G09, 5'...    46   0.80   1
(FI200335) CccaBa030-K13TR CccABa Cajanus cajan genomic clon...    46   0.80   1
(FI114105) MUGQ_CH252P484N12Sp6_CH0177_036 CHORI-252 Vervet ...    46   0.80   1
(FH990882) CHO_OF6848xn14f1.ab1 CHO_OF6 Nicotiana tabacum ge...    46   0.80   1
(FH920013) CHO_ONF032xn12f1.ab1 CHO_ONF Nicotiana tabacum ge...    46   0.80   1
(FH897432) CHO_ONF051xo19f1.ab1 CHO_ONF Nicotiana tabacum ge...    46   0.80   1
(FH452080) CHO_OF4324xc06r1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   0.80   1
(FH341813) CHO_OF4622xp02r1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   0.80   1
(FH341730) CHO_OF4622xp02f1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   0.80   1
(FH203656) CHO_OF3121xo01r1.ab1 CHO_OF3 Nicotiana tabacum ge...    46   0.80   1
(FH092959) CHO_OF3667xl11r1.ab1 CHO_OF3 Nicotiana tabacum ge...    46   0.80   1
(FH092890) CHO_OF3667xl11f1.ab1 CHO_OF3 Nicotiana tabacum ge...    46   0.80   1
(ET780039) CHO_OF576xo04f1.ab1 CHO_OF Nicotiana tabacum geno...    46   0.80   1
(ET696629) CHO_OF359xn22f1.ab1 CHO_OF Nicotiana tabacum geno...    46   0.80   1
(ET090063) QM0AAA14DE03FM1 CCL1 Citrus clementina genomic cl...    46   0.80   1
(ET083138) QM0AAC4CE06FM2 CCH3 Citrus clementina genomic clo...    46   0.80   1
(ER838848) PPTFH77TF Solanum tuberosum RHPOTKEY BAC ends Sol...    46   0.80   1
(ER792376) PPTGH32TF Solanum tuberosum RHPOTKEY BAC ends Sol...    46   0.80   1
(AQ246652) HS_2062_B2_D09_T7 CIT Approved Human Genomic Sper...    46   0.80   1
(EI911780) VUH2-29L8TV VUUBBa (VUH2) Vigna unguiculata genom...    46   0.80   1
(EI894110) VUH1-73O5TR VUUBBa (VUH1) Vigna unguiculata genom...    46   0.80   1
(EI205450) MUGQ_CH252P204P11Sp6_CN323_034 CHORI-252 Vervet M...    46   0.80   1
(ED683522) GM_WBb0017J13.r GM_WBb Glycine max genomic clone ...    46   0.80   1
(ED487626) MUGQ_CH252P124D05T7_CN100_029 CHORI-252 Vervet Mo...    46   0.80   1
(DX814755) MUGQ_CH252P062B18T7_AV1108_079 CHORI-252 Vervet M...    46   0.80   1
(DX540156) GH_MBb0063M11f GH_MBb Gossypium hirsutum genomic ...    46   0.80   1
(DX523551) GH_MBb0022A04r GH_MBb Gossypium hirsutum genomic ...    46   0.80   1
(DU440672) 1098421060610 CHORI-243 Ovis aries genomic clone ...    46   0.80   1
(DH607132) Rattus norvegicus DNA, BAC clone: RNB1-135C11, 5'...    46   0.80   1
(DH512459) Rattus norvegicus DNA, BAC clone: RNB1-006P16, 3'...    46   0.80   1
(CZ975969) 177790 Tomato MboI BAC Library Solanum lycopersic...    46   0.80   1
(CZ502041) GMW2-18J13a.g1 GMW2 Glycine max genomic, genomic ...    46   0.80   1
(CW858705) she2h28-31.b_059.ab1 Whole-genome shotgun library...    46   0.80   1
(CL860057) OR_CBa0091I10.r OR_CBa Oryza rufipogon genomic cl...    46   0.80   1
(CE668560) tigr-gss-dog-17000313700039 Dog Library Canis lup...    46   0.80   1
(CE152788) tigr-gss-dog-17000371348748 Dog Library Canis lup...    46   0.80   1
(BX221184) Danio rerio genomic clone DKEY-52G13, genomic sur...    46   0.80   1
(BX209884) Danio rerio genomic clone DKEY-264M15, genomic su...    46   0.80   1
(BX205860) Danio rerio genomic clone DKEY-239A24, genomic su...    46   0.80   1
(BX182130) Danio rerio genomic clone DKEY-192I21, genomic su...    46   0.80   1
(BX171086) Danio rerio genomic clone DKEY-127I18, genomic su...    46   0.80   1
(EL497040) H06_PFBAMHI-M-T3-PLATE14A.AB1 Blood stage Plasmod...    46   0.80   1
(EH611103) FDR306-P00041-DEPE-R_P07 FDR306 Danio rerio cDNA ...    46   0.80   1
(EH599986) FDR306-P00012-DEPE-R_H22 FDR306 Danio rerio cDNA ...    46   0.80   1
(EH386017) 1189 E. acervulina cDNA from second generation me...    46   0.80   1
(EC749265) POE00005918 PL(light) Polytomella parva cDNA, mRN...    46   0.80   1
(DN395127) LIB3935-024-Q1-K1-A6 LIB3935 Canis lupus familiar...    46   0.80   1
(CV849122) ID0AEE7BH07RM1 ID0AEE Acyrthosiphon pisum cDNA cl...    46   0.80   1
(AI957668) fc96g10.x1 Zebrafish WashU MPIMG EST Danio rerio ...    46   0.80   1
(CD184241) MS1-0042T-R225-H12-U.G MS1-0042 Schistosoma manso...    46   0.80   1
(CD184240) MS1-0042T-R225-H11-U.G MS1-0042 Schistosoma manso...    46   0.80   1
(CA855111) PfESToac46h05.y1 Plasmodium falciparum 3D7 gameto...    46   0.80   1
(AI722300) fc32c03.x1 Zebrafish WashU MPIMG EST Danio rerio ...    46   0.80   1
(BQ457431) MAGP0002.IA Schistosoma mansoni adult, Phil LoVer...    46   0.80   1
(BP116451) Bombyx mori cDNA, clone:brS-0072, 5' end sequence.      46   0.80   1
(BM275228) PfESToaa65g05.y1 Plasmodium falciparum 3D7 gameto...    46   0.80   1
(BB912804) Trifolium pratense cDNA clone:RCE12122.                 46   0.80   1
(BB728931) Mus musculus 8 cells embryo 8 cells cDNA, RIKEN f...    46   0.80   1
(GH725081) F1.113O19R010628 F1 Triticum aestivum cDNA clone ...    46   0.80   1
(EY757227) CS13-C1-001-018-H09-CT.F Sweet orange leaf, field...    46   0.80   1
(EX611078) 255375306 Pea aphid whole body normalized full le...    46   0.80   1
(AL844507) Plasmodium falciparum 3D7 chromosome 8.                 44   1.4    2
(EA639814) Sequence 18693 from patent US 7365185.                  38   1.5    2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    44   1.5    2
(FP340266) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   1.7    2
(AM472302) Vitis vinifera contig VV78X146064.2, whole genome...    40   1.8    2
(CR382340) Zebrafish DNA sequence from clone DKEY-151G10 in ...    40   2.0    2
(BM169243) EST571766 PyBS Plasmodium yoelii yoelii cDNA clon...    32   2.1    2
(AC128648) Homo sapiens 3 BAC RP11-94E10 (Roswell Park Cance...    38   2.7    2
(AC132182) Rattus norvegicus clone CH230-10O15, WORKING DRAF...    44   2.8    2
(AC129156) Rattus norvegicus clone CH230-46P8, WORKING DRAFT...    40   2.8    2
(FP085432) Zebrafish DNA sequence from clone CH73-305J1 in l...    44   3.1    1
(FP016231) Zebrafish DNA sequence from clone CH73-231O20.          44   3.1    1
(FP015875) Zebrafish DNA sequence from clone CH73-126P21 in ...    44   3.1    1
(FJ457111) Hymenolaimus malacorhynchos clone FABSSZE09FMYG7 ...    44   3.1    1
(CU929228) Zebrafish DNA sequence from clone CH73-178L14 in ...    44   3.1    1
(CU929038) Zebrafish DNA sequence from clone CH1073-184K22 i...    44   3.1    1
(CU915761) Zebrafish DNA sequence from clone CH73-199G24 in ...    44   3.1    1
(CU915272) Zebrafish DNA sequence from clone CH73-137F8 in l...    44   3.1    1
(CU856137) Zebrafish DNA sequence from clone CH73-378B3 in l...    44   3.1    1
(CU855950) Zebrafish DNA sequence from clone CH1073-392O20 i...    44   3.1    1
(CU855854) Zebrafish DNA sequence from clone CH73-116B16 in ...    44   3.1    1
(CU855758) Zebrafish DNA sequence from clone CH211-247I17 in...    44   3.1    1
(CU694808) Zebrafish DNA sequence from clone CH211-45L19 in ...    44   3.1    1
(CU694444) Zebrafish DNA sequence from clone CH73-282A8 in l...    44   3.1    1
(CU651673) Zebrafish DNA sequence from clone CH1073-416M20 i...    44   3.1    1
(CU638700) Zebrafish DNA sequence from clone CH1073-250A3 in...    44   3.1    1
(CU634008) Zebrafish DNA sequence from clone CH1073-382C16 i...    44   3.1    1
(CU633838) Zebrafish DNA sequence from clone CH1073-291C23 i...    44   3.1    1
(CU611053) Zebrafish DNA sequence from clone CH1073-348M13 i...    44   3.1    1
(CU611035) Zebrafish DNA sequence from clone CH1073-196N20 i...    44   3.1    1
(CU596012) Zebrafish DNA sequence from clone CH73-359M17 in ...    44   3.1    1
(CU570987) Zebrafish DNA sequence from clone CH73-40A2 in li...    44   3.1    1
(CU464112) Zebrafish DNA sequence from clone CH211-122M3 in ...    44   3.1    1
(CU463856) Zebrafish DNA sequence from clone CH73-117H1 in l...    44   3.1    1
(CU462819) Zebrafish DNA sequence from clone CH211-2C17 in l...    44   3.1    1
(CU459185) Zebrafish DNA sequence from clone CH73-167A11 in ...    44   3.1    1
(CU459168) Zebrafish DNA sequence from clone CH73-207K12 in ...    44   3.1    1
(CU459136) Zebrafish DNA sequence from clone DKEYP-1D11 in l...    44   3.1    1
(CU459013) Zebrafish DNA sequence from clone CH73-57K5 in li...    44   3.1    1
(CU457482) Zebrafish DNA sequence from clone CH73-173A11 in ...    44   3.1    1
(CU302202) Zebrafish DNA sequence from clone DKEY-156M2 in l...    44   3.1    1
(CU183074) Zebrafish DNA sequence from clone CH211-270K20 in...    44   3.1    1
(CU062417) Zebrafish DNA sequence from clone DKEY-266G24 in ...    44   3.1    1
(CU024872) Zebrafish DNA sequence from clone DKEY-58J5 in li...    44   3.1    1
(CT997813) Zebrafish DNA sequence from clone DKEY-12I16 in l...    44   3.1    1
(CT826381) Zebrafish DNA sequence from clone CH73-316N6 in l...    44   3.1    1
(CT583678) Zebrafish DNA sequence from clone DKEYP-106C11 in...    44   3.1    1
(CT583650) Zebrafish DNA sequence from clone CH211-194C1 in ...    44   3.1    1
(CT573327) Zebrafish DNA sequence from clone CH211-258N9 in ...    44   3.1    1
(CT573108) Zebrafish DNA sequence from clone DKEY-51M13 in l...    44   3.1    1
(CT030123) Zebrafish DNA sequence from clone CH73-112A14 in ...    44   3.1    1
(CT029995) Zebrafish DNA sequence from clone DKEY-109M21 in ...    44   3.1    1
(CT027817) Zebrafish DNA sequence from clone DKEY-106G22 in ...    44   3.1    1
(CT027746) Zebrafish DNA sequence from clone CH211-234B19 in...    44   3.1    1
(CT027614) Zebrafish DNA sequence from clone DKEY-189P14 in ...    44   3.1    1
(CR974475) Zebrafish DNA sequence from clone CH73-27E22 in l...    44   3.1    1
(CR933843) Zebrafish DNA sequence from clone DKEY-105E17 in ...    44   3.1    1
(CR933003) Zebrafish DNA sequence from clone DKEY-149P6 in l...    44   3.1    1
(CR932440) Zebrafish DNA sequence from clone CH211-247J17 in...    44   3.1    1
(CR932058) Zebrafish DNA sequence from clone DKEY-22M14 in l...    44   3.1    1
(CR925781) Zebrafish DNA sequence from clone DKEY-3B23 in li...    44   3.1    1
(CR925699) Zebrafish DNA sequence from clone RP71-18J1 in li...    44   3.1    1
(CR848802) Zebrafish DNA sequence from clone DKEY-15J19 in l...    44   3.1    1
(CR847959) Zebrafish DNA sequence from clone CH211-202D15.         44   3.1    1
(CR847947) Zebrafish DNA sequence from clone DKEY-56M16 in l...    44   3.1    1
(CR847940) Zebrafish DNA sequence from clone CH211-250O24 in...    44   3.1    1
(CR847530) Zebrafish DNA sequence from clone DKEY-14I17 in l...    44   3.1    1
(CR788308) Zebrafish DNA sequence from clone DKEY-192K19 in ...    44   3.1    1
(CR753844) Zebrafish DNA sequence from clone DKEY-193H7 in l...    44   3.1    1
(CR678388) Zebrafish DNA sequence from clone CH211-125I3 in ...    44   3.1    1
(CR627494) Zebrafish DNA sequence from clone CH211-48C9 in l...    44   3.1    1
(CR626875) Zebrafish DNA sequence from clone DKEY-31J4 in li...    44   3.1    1
(CR556722) Zebrafish DNA sequence from clone CH211-195N12 in...    44   3.1    1
(CR548632) Zebrafish DNA sequence from clone DKEY-175H17 in ...    44   3.1    1

>(C84706) Dictyostelium discoideum slug cDNA, clone SSE666.
          Length = 315

 Score =  159 bits (80), Expect(2) = 6e-37
 Identities = 80/80 (100%)
 Strand = Plus / Plus


Query: 1  tattataataataatagtaattattataatctataagctggctggatacataaaaatttg 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tattataataataatagtaattattataatctataagctggctggatacataaaaatttg 60


Query: 61 agtattgtggtgaaaaataa 80
          ||||||||||||||||||||
Sbjct: 61 agtattgtggtgaaaaataa 80

 Score = 30.2 bits (15), Expect(2) = 6e-37
 Identities = 15/15 (100%)
 Strand = Plus / Plus


Query: 139 cttaataatgtattt 153
           |||||||||||||||
Sbjct: 139 cttaataatgtattt 153

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 153,474,051
Number of extensions: 13892502
Number of successful extensions: 3126507
Number of sequences better than 10.0: 1530
Length of query: 314
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 291
Effective length of database: 102,190,702,835
Effective search space: 29737494524985
Effective search space used: 29737494524985
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U05042-1 (Contig-U05042-1Q) /CSM_Contig/Contig-U05042-1Q.Seq.d
         (314 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 108,043,346
Number of extensions: 488288
Number of successful extensions: 626
Number of sequences better than 10.0: 0
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 0
Length of query: 104
Length of database: 1,061,185,681
Length adjustment: 72
Effective length of query: 32
Effective length of database: 825,857,425
Effective search space: 26427437600
Effective search space used: 26427437600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 28 (15.4 bits)
PSORT 

 psg: 0.69  gvh: 0.45  alm: 0.31  top: 0.20  tms: 0.07  mit: 0.40  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 16.0 %: nuclear
	 12.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall

>> prediction for Contig-U05042-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0