NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05033-1
Contig ID Contig-U05033-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U05033-1 (Contig-U05033-1Q) /CSM_Contig/Contig-U05033-1Q.Seq.d
TGATTCACCAAAAATTAAAGATCAAATTATAAAATATGTACCAAATTTAT
TAAATTTATTAGATCAAAAACAACAACAACAACCAATTAATGATAGAATT
AGAATTTTTCAAATTATGTCAAATCCAACATTTATTCAAAGATCATATAA
TAATAATAGTATTGGTAATAATAATAATGATAATAAAAAATTAAAGAATA
GAAAAGTTATAATTTCAAGTAATTTTAAATCACCAATTGAAAGTATTTTA
TTCACTATAAATTCAATTTTACATTCATTAAAGAGTACATCATTTAGGGG
TTTAAACGATTTTAGATATAATTGTACCAAAAGAATTTAATCAAGATTTA
TTATCATCAATTAATGGTTCGATAATAAATTTAAATTTCATTTTACCAAA
TCAAAGCTTTGTTTCAACAATTAAATTTAAATTTAATCCAAAGGATTTAG
CAATTAAAGTGGCTTTTCAATTGGGTGTATCGGTTGGTGAGACCACAATT
TCAAATTTCTCAATCACTGGTGATCTTCAATTAGGTTTCACTCTAGGTAC
TGCTAAACCTGAATATATCTCTTTCTTGGAGGATCCAATCATTAACTTTG
ATTTCGATTCAACTGGTGTTATCATATCAATTTAATTGATAAATTTGTTA
AACCAATCTTAAAAAAATCAATTAGAAAGAGATTAGTTCATCCAAATAGA
TTTTATTTACCAAGTTCTTAATAGGAAGAAAAAAAATAAAAAAAAAAAAT
AAAAAAAAAAATAAAAAAATAAAGAGTTAAAAAAAAAAAA
Gap no gap
Contig length 790
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 1858706
End point 1859501
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05033
List of clone(s) 

est1=SSE636E,1,791
Translated Amino Acid sequence 
DSPKIKDQIIKYVPNLLNLLDQKQQQQPINDRIRIFQIMSNPTFIQRSYNNNSIGNNNND
NKKLKNRKVIISSNFKSPIESILFTINSILHSLKSTSFRGLNDFRYNCTKRI*srfiiin
*wfdnkfkfhftksklcfnn*i*i*skgfsn*sgfsigcigw*dhnfkflnhw*ssirfh
sryc*t*iylflggsnh*l*frfnwcyhinlidkfvkpilkksirkrlvhpnrfylpss*
*eekk*kkkikkkikk*rvkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
*ftkn*rsnykictkfikfirsktttttn***n*nfsnyvksniyskii****yw*****
**kike*ksynfk*f*itn*kyfihykfnftfikeyii*gfkrf*i*lyqknlikiyyhq
lmvr**i*isfyqikalfqqlnlnliqri*qlkwlfnwvyrlvrpqfqisqslvifn*vs
l*vllnlnislswriqsltlisiqlvlsyqfn**ic*tnlkkin*keisssk*ilftkfl
igrkkikkknkkknkkiks*kkk


Frame B:
DSPKIKDQIIKYVPNLLNLLDQKQQQQPINDRIRIFQIMSNPTFIQRSYNNNSIGNNNND
NKKLKNRKVIISSNFKSPIESILFTINSILHSLKSTSFRGLNDFRYNCTKRI*srfiiin
*wfdnkfkfhftksklcfnn*i*i*skgfsn*sgfsigcigw*dhnfkflnhw*ssirfh
sryc*t*iylflggsnh*l*frfnwcyhinlidkfvkpilkksirkrlvhpnrfylpss*
*eekk*kkkikkkikk*rvkkkk


Frame C:
ihqklkikl*nmyqiy*iy*iknnnnnqlmieleffklcqiqhlfkdhiiiivlviiimi
ikn*riekl*fqvilnhqlkvfysl*iqfyih*rvhhlgv*tildiivpkefnqdllssi
ngsiinlnfilpnqsfvstikfkfnpkdlaikvafqlgvsvgettisnfsitgdlqlgft
lgtakpeyisfledpiinfdfdstgviisi*linllnqs*knqlerd*fiqidfiyqvln
rkkknkkkk*kkk*knkelkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05033-1 (Contig-U05033-1Q)
/CSM_Contig/Contig-U05033-1Q.Seq.d
         (790 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05033-1 (Contig-U05033-1Q) /CSM_Contig/Conti...   979  0.0
Contig-U09444-1 (Contig-U09444-1Q) /CSM_Contig/Conti...    48  1e-05
Contig-U11193-1 (Contig-U11193-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U12445-1 (Contig-U12445-1Q) /CSM_Contig/Conti...    42  9e-04
Contig-U12231-1 (Contig-U12231-1Q) /CSM_Contig/Conti...    42  9e-04
Contig-U11822-1 (Contig-U11822-1Q) /CSM_Contig/Conti...    42  9e-04
Contig-U06780-1 (Contig-U06780-1Q) /CSM_Contig/Conti...    42  9e-04
Contig-U06763-1 (Contig-U06763-1Q) /CSM_Contig/Conti...    42  9e-04
Contig-U04904-1 (Contig-U04904-1Q) /CSM_Contig/Conti...    42  9e-04
Contig-U12544-1 (Contig-U12544-1Q) /CSM_Contig/Conti...    40  0.004

>Contig-U05033-1 (Contig-U05033-1Q) /CSM_Contig/Contig-U05033-1Q.Seq.d
          Length = 790

 Score =  979 bits (494), Expect = 0.0
 Identities = 508/515 (98%)
 Strand = Plus / Plus

                                                                       
Query: 214 ttcaagtaattttaaatcaccaattgaaagtattttattcactataaattcaattttaca 273
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 ttcaagtaattttaaatcaccaattgaaagtattttattcactataaattcaattttaca 273

                                                                       
Query: 274 ttcattaaagagtacatcatttaggggtttaaacgattttagatataattgtaccaaaag 333
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttcattaaagagtacatcatttaggggtttaaacgattttagatataattgtaccaaaag 333

                                                                       
Query: 334 aatttaatcaagatttattatcatcaattaatggttcgataataaatttaaatttcattt 393
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aatttaatcaagatttattatcatcaattaatggttcgataataaatttaaatttcattt 393

                                                                       
Query: 394 taccaaatcaaagctttgtttcaacaattaaatttaaatttaatccaaaggatttagcaa 453
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 taccaaatcaaagctttgtttcaacaattaaatttaaatttaatccaaaggatttagcaa 453

                                                                       
Query: 454 ttaaagtggcttttcaattgggtgtatcggttggtgagaccacaatttcaaatttctcaa 513
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ttaaagtggcttttcaattgggtgtatcggttggtgagaccacaatttcaaatttctcaa 513

                                                                       
Query: 514 tcactggtgatcttcaattaggtttcactctaggtactgctaaacctgaatatatctctt 573
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tcactggtgatcttcaattaggtttcactctaggtactgctaaacctgaatatatctctt 573

                                                                       
Query: 574 tcttggaggatccaatcattaactttgatttcgattcaactggtgttatcatatcaattt 633
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 tcttggaggatccaatcattaactttgatttcgattcaactggtgttatcatatcaattt 633

                                                                       
Query: 634 aattgataaatttgttaaaccaatcttnnnnnnntcaattagaaagagattagttcatcc 693
           |||||||||||||||||||||||||||       ||||||||||||||||||||||||||
Sbjct: 634 aattgataaatttgttaaaccaatcttaaaaaaatcaattagaaagagattagttcatcc 693

                                              
Query: 694 aaatagattttatttaccaagttcttaataggaag 728
           |||||||||||||||||||||||||||||||||||
Sbjct: 694 aaatagattttatttaccaagttcttaataggaag 728


 Score =  285 bits (144), Expect = 4e-77
 Identities = 144/144 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgattcaccaaaaattaaagatcaaattataaaatatgtaccaaatttattaaatttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgattcaccaaaaattaaagatcaaattataaaatatgtaccaaatttattaaatttatt 60

                                                                       
Query: 61  agatcaaaaacaacaacaacaaccaattaatgatagaattagaatttttcaaattatgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agatcaaaaacaacaacaacaaccaattaatgatagaattagaatttttcaaattatgtc 120

                                   
Query: 121 aaatccaacatttattcaaagatc 144
           ||||||||||||||||||||||||
Sbjct: 121 aaatccaacatttattcaaagatc 144


 Score = 36.2 bits (18), Expect = 0.056
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 420 attaaatttaaatttaat 437
           ||||||||||||||||||
Sbjct: 437 attaaatttaaatttaat 420


>Contig-U09444-1 (Contig-U09444-1Q) /CSM_Contig/Contig-U09444-1Q.Seq.d
          Length = 982

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 56 ttattagatcaaaaacaacaacaacaac 83
          |||||||||||| |||||||||||||||
Sbjct: 26 ttattagatcaacaacaacaacaacaac 53


 Score = 32.2 bits (16), Expect = 0.87
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 407 ctttgtttcaacaatt 422
           ||||||||||||||||
Sbjct: 466 ctttgtttcaacaatt 451


 Score = 30.2 bits (15), Expect = 3.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                         
Query: 69 aacaacaacaacaac 83
          |||||||||||||||
Sbjct: 45 aacaacaacaacaac 59


 Score = 30.2 bits (15), Expect = 3.4
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                         
Query: 69 aacaacaacaacaac 83
          |||||||||||||||
Sbjct: 42 aacaacaacaacaac 56


>Contig-U11193-1 (Contig-U11193-1Q) /CSM_Contig/Contig-U11193-1Q.Seq.d
          Length = 1395

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 65  caaaaacaacaacaacaaccaa 86
           ||||||||||||||||||||||
Sbjct: 496 caaaaacaacaacaacaaccaa 517


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,210
Number of Sequences: 6905
Number of extensions: 26210
Number of successful extensions: 7813
Number of sequences better than 10.0: 1023
length of query: 790
length of database: 5,674,871
effective HSP length: 16
effective length of query: 774
effective length of database: 5,564,391
effective search space: 4306838634
effective search space used: 4306838634
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7. 8
Homology vs DNA 
Query= Contig-U05033-1 (Contig-U05033-1Q) /CSM_Contig/Contig-U05033-1Q.Seq.d
         (790 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C84695) Dictyostelium discoideum slug cDNA, clone SSE636.        630   0.0    3
(AU072471) Dictyostelium discoideum slug cDNA, clone SSE636.      147   8e-31  1
(CK149198) 1742HFEX1H3 BgORESTES infected NHM 1742 Head/foot...    52   0.034  1
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    38   0.046  6
(AC019120) Homo sapiens chromosome 2 clone RP11-527E3, WORKI...    36   0.081  2
(AC016864) Homo sapiens clone RP11-14M5, WORKING DRAFT SEQUE...    36   0.082  2
(AC132154) Homo sapiens BAC clone RP11-523J2 from 2, complet...    36   0.083  2
(EJ411606) 1093012149664 Global-Ocean-Sampling_GS-28-01-01-1...    40   0.10   2
(ER402903) 1095351035269 Global-Ocean-Sampling_GS-34-01-01-1...    48   0.13   2
(EY497680) CBBP3693.rev CBBP Hirudo medicinalis hermaphrodit...    50   0.13   1
(EY493998) CBBP19771.rev CBBP Hirudo medicinalis hermaphrodi...    50   0.13   1
(EY487045) CBBP15563.fwd CBBP Hirudo medicinalis hermaphrodi...    50   0.13   1
(EY487044) CBBP15563.rev CBBP Hirudo medicinalis hermaphrodi...    50   0.13   1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    38   0.19   11
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    36   0.28   11
(AP004515) Lotus japonicus genomic DNA, chromosome 4, clone:...    36   0.32   2
(ER302139) 1092343710621 Global-Ocean-Sampling_GS-34-01-01-1...    36   0.36   2
(AM455432) Vitis vinifera contig VV78X246627.8, whole genome...    40   0.41   2
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    36   0.52   7
(AC221368) Bos taurus clone CH240-404O12, WORKING DRAFT SEQU...    48   0.53   1
(AC173061) Bos taurus clone CH240-526B16, WORKING DRAFT SEQU...    48   0.53   1
(ER398931) 1095349031088 Global-Ocean-Sampling_GS-34-01-01-1...    48   0.53   1
(EJ754703) 1092963067452 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.53   1
(EJ090418) 1095460169118 Global-Ocean-Sampling_GS-26-01-01-1...    48   0.53   1
(EJ080400) 1095460017919 Global-Ocean-Sampling_GS-26-01-01-1...    48   0.53   1
(AM052755) Entodinium caudatum EST, clone Entodinium129C.          48   0.53   1
(EK358430) 1095468813885 Global-Ocean-Sampling_GS-31-01-01-1...    36   0.75   3
(EU863081) Chelostoma incisulum voucher ETHZ 110 cytochrome ...    34   1.0    4
(AC021294) Homo sapiens clone RP11-23B13, WORKING DRAFT SEQU...    32   1.1    2
(AC217580) Oryza punctata clone OP__Ba0037P12, complete sequ...    32   1.1    2
(AP010086) Lotus japonicus genomic DNA, clone: LjT39N06, TM0...    34   1.1    2
(AP009073) Lotus japonicus genomic DNA, chromosome 1, clone:...    34   1.1    2
(AP010554) Lotus japonicus genomic DNA, chromosome 5, clone:...    34   1.1    2
(AP010005) Lotus japonicus genomic DNA, chromosome 1, clone:...    34   1.1    2
(AC217581) Oryza punctata clone OP__Ba0046C09, complete sequ...    32   1.1    2
(AP009589) Lotus japonicus genomic DNA, chromosome 4, clone:...    34   1.1    2
(AP008175) Lotus japonicus genomic DNA, chromosome 5, clone:...    34   1.1    2
(AP008001) Lotus japonicus genomic DNA, chromosome 5, clone:...    34   1.1    2
(AP009702) Lotus japonicus genomic DNA, chromosome 5, clone:...    34   1.1    2
(AP010525) Lotus japonicus genomic DNA, chromosome 5, clone:...    34   1.1    2
(AP009237) Lotus japonicus genomic DNA, chromosome 1, clone:...    34   1.1    2
(AP009741) Lotus japonicus genomic DNA, chromosome 3, clone:...    34   1.1    2
(AP007826) Lotus japonicus genomic DNA, chromosome 5, clone:...    34   1.1    2
(AP009685) Lotus japonicus genomic DNA, clone: LjT37G19, TM1...    34   1.1    2
(AP006337) Lotus japonicus genomic DNA, chromosome 2, clone:...    34   1.1    2
(AP010158) Lotus japonicus genomic DNA, chromosome 1, clone:...    34   1.1    2
(AP006335) Lotus japonicus genomic DNA, chromosome 3, clone:...    34   1.1    2
(AP009633) Lotus japonicus genomic DNA, chromosome 1, clone:...    34   1.1    2
(AP006737) Lotus japonicus genomic DNA, chromosome 1, clone:...    34   1.1    2
(AP007831) Lotus japonicus genomic DNA, chromosome 1, clone:...    34   1.1    2
(AP010526) Lotus japonicus genomic DNA, chromosome 5, clone:...    34   1.1    2
(AP009721) Lotus japonicus genomic DNA, clone: LjT17C09, TM1...    34   1.1    2
(AP007502) Lotus japonicus genomic DNA, chromosome 1, clone:...    34   1.1    2
(BX541358) Leishmania braziliensis GSS, clone LBAF095H01.          36   1.2    2
(AP007898) Lotus japonicus genomic DNA, chromosome 3, clone:...    34   1.2    2
(AL627233) Human DNA sequence from clone RP11-305I2 on chrom...    34   1.2    2
(AP010479) Lotus japonicus genomic DNA, chromosome 5, clone:...    32   1.2    2
(AP006536) Lotus japonicus genomic DNA, chromosome 2, clone:...    34   1.2    2
(AC194364) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    34   1.2    6
(AP006703) Lotus japonicus genomic DNA, chromosome 2, clone:...    34   1.2    2
(AP009851) Lotus japonicus genomic DNA, clone: LjT10I01, TM1...    34   1.2    2
(AP006537) Lotus japonicus genomic DNA, chromosome 2, clone:...    34   1.2    2
(AM426573) Vitis vinifera contig VV78X155943.11, whole genom...    36   1.3    2
(AM436761) Vitis vinifera contig VV78X049428.10, whole genom...    36   1.3    2
(ED804196) MG__Bb0068N01f MG__Bb Mimulus guttatus genomic, g...    36   1.4    2
(EI094086) hhe0015ab11.g1 hhe Oryza ridleyi genomic clone hh...    36   1.4    2
(CU633972) Zebrafish DNA sequence from clone CH73-56P18 in l...    42   1.5    5
(AG262541) Lotus japonicus DNA, clone:LjT55m02_not.                34   1.5    2
(DU935699) 358469 Tomato EcoRI BAC Library Solanum lycopersi...    42   1.6    2
(BV624087) S215P6863FD7.T0 Clara Pan troglodytes troglodytes...    46   2.1    1
(AC079336) Homo sapiens chromosome 17, clone RP11-466A19, co...    46   2.1    1
(AC002119) Homo sapiens chromosome 17, clone CTC-347H5, comp...    46   2.1    1
(AC131529) Rattus norvegicus clone CH230-434C6, *** SEQUENCI...    46   2.1    1
(AC113853) Rattus norvegicus clone CH230-139I7, WORKING DRAF...    46   2.1    1
(AC110371) Rattus norvegicus clone CH230-205M11, WORKING DRA...    46   2.1    1
(AC098895) Rattus norvegicus clone CH230-63N8, WORKING DRAFT...    46   2.1    1
(FP340240) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.1    1
(CU550665) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.1    1
(BH321054) CH230-63N8.TJ CHORI-230 Segment 1 Rattus norvegic...    46   2.1    1
(EI368699) POTA870TR Solanum tuberosum RHPOTKEY BAC ends Sol...    46   2.1    1
(DH812865) Rattus norvegicus DNA, BAC clone: RNB1-412M18, 3'...    46   2.1    1
(CT110797) Sus scrofa genomic clone CH242-226B24, genomic su...    46   2.1    1
(AG875591) Oryza sativa Indica Group genomic DNA, BAC end se...    46   2.1    1
(BX114360) RZPD Homo sapiens cDNA clone IMAGp998N0586 = IMAG...    46   2.1    1
(AB013391) Arabidopsis thaliana genomic DNA, chromosome 5, P...    36   2.9    5
(CT573232) Zebrafish DNA sequence from clone DKEY-188A10 in ...    40   3.3    3
(AY657025) Mus musculus chromosome 6 clone GA_x54KRFPKN04:11...    32   3.9    2
(AC161057) Mus musculus BAC clone RP23-248K11 from chromosom...    34   4.0    2
(AC153614) Mus musculus 6 BAC RP23-344N8 (Roswell Park Cance...    32   4.0    2
(AC158649) Mus musculus 6 BAC RP23-279O6 (Roswell Park Cance...    32   4.0    2
(AC181191) Strongylocentrotus purpuratus clone R3-12K17, WOR...    32   4.0    2
(AC113030) Mus musculus chromosome 6, clone RP23-211L5, comp...    32   4.0    2
(AC007600) Homo sapiens chromosome 16 clone RP11-264A16, com...    32   4.0    2
(AC175445) Bos taurus clone CH240-197L12, WORKING DRAFT SEQU...    32   4.0    2
(AL627250) Human DNA sequence from clone RP13-222H17 on chro...    32   4.0    2
(FP102039) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   4.0    2
(CU463254) Human DNA sequence from clone XX-NCIH1770_1B20.         32   4.0    2
(AC175763) Bos taurus clone CH240-381O7, WORKING DRAFT SEQUE...    32   4.0    2
(AC116340) Homo sapiens chromosome 5 clone RP11-118I21, comp...    34   4.0    2
(AC084147) Homo sapiens chromosome 5 clone RP11-118I21, WORK...    34   4.0    2
(AC025774) Homo sapiens chromosome 5 clone CTD-2292N2, compl...    34   4.0    2
(AC220854) Bos taurus clone CH240-342N13, WORKING DRAFT SEQU...    32   4.0    2
(AC189210) Brassica rapa subsp. pekinensis clone KBrB007O13,...    32   4.1    2
(CT573480) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   4.1    2
(AR399481) Sequence 3 from patent US 6620607.                      32   4.1    2
(AC034221) Homo sapiens chromosome 5 clone CTD-2057C8, WORKI...    34   4.1    2
(AP010629) Lotus japonicus genomic DNA, chromosome 1, clone:...    32   4.2    2
(CU468828) Zebrafish DNA sequence from clone CH73-341P16 in ...    34   4.2    2
(AP004986) Lotus japonicus genomic DNA, chromosome 1, clone:...    32   4.2    2
(AY077835) Goatpox virus Pellor, complete genome.                  44   4.4    6
(AY077836) Goatpox virus G20-LKV, complete genome.                 44   4.4    6
(AF325528) Lumpy skin disease virus NI-2490 isolate Neethlin...    44   4.5    6
(AF409137) Lumpy skin disease virus NW-LW isolate Neethling ...    44   4.5    6
(AC181445) Strongylocentrotus purpuratus clone R3-50N24, WOR...    40   4.6    3
(AC005025) Homo sapiens clone GS464G18, *** SEQUENCING IN PR...    36   4.7    4
(CZ116515) OA_BBa0001N02.f OA_BBa Oryza alta genomic clone O...    40   4.8    2
(AY591673) Mus musculus clone IgK4-75 immunoglobulin kappa-l...    32   4.9    2
(BX538350) Cryptosporidium parvum chromosome 6, complete seq...    40   5.1    4
(ED455960) AUAC-aak14f09.g1 Ascaris suum whole genome shotgu...    36   5.2    2
(DQ144701) Metriorrhynchus sp. UPOL 000597 NADH dehydrogenas...    34   5.3    2
(AL844563) Zebrafish DNA sequence from clone DKEY-5O10 in li...    40   5.3    3
(AC123898) Medicago truncatula clone mth2-31m6, complete seq...    38   5.3    8
(EY716388) CS00-C3-702-066-H05-CT.F Sweet orange fruit, deve...    34   5.3    2
(ER352998) 1092347052438 Global-Ocean-Sampling_GS-34-01-01-1...    34   5.4    2
(CL347750) RPCI44_273C7.r RPCI-44 Sus scrofa genomic clone R...    32   5.4    2
(CC500376) CH240_338E20.T7 CHORI-240 Bos taurus genomic clon...    32   5.4    2
(AL448652) Paramecium tetraurelia sequence M24B02u of the en...    34   5.5    2
(AQ606036) HS_5383_A2_H10_SP6E RPCI-11 Human Male BAC Librar...    34   5.6    2
(AB192891) Tubifex tubifex cdx mRNA for Caudal, partial cds.       32   5.8    3
(AL440286) T7 end of clone BD0AA011C10 of library BD0AA from...    40   5.8    2
(ER527033) 1093015693225 Global-Ocean-Sampling_GS-35-01-01-1...    38   5.9    2
(AF203387) Canavalia lineata ornithine carbamoyltransferase ...    40   6.4    3
(EJ796032) 1093017400892 Global-Ocean-Sampling_GS-30-02-01-1...    32   6.7    3
(GE697855) CBUN8422.g1 B.anynana_wing.0-3d_2-10kb Bicyclus a...    40   6.7    2
(CT907516) Phaeodactylum tricornutum 5-PRIME EST from clone ...    38   7.0    2
(EJ780767) 1093017248948 Global-Ocean-Sampling_GS-30-02-01-1...    32   7.0    3
(CU468905) Zebrafish DNA sequence from clone DKEY-178O16 in ...    44   8.3    1
(CR450720) Zebrafish DNA sequence from clone DKEYP-51F11 in ...    44   8.3    1
(AL953852) Zebrafish DNA sequence from clone CH211-213C6 in ...    44   8.3    1
(AF409138) Lumpy skin disease virus isolate Neethling vaccin...    44   8.3    1
(AC130477) Mus musculus chromosome 15, clone RP23-329G19, co...    44   8.3    1
(AM423521) Vitis vinifera contig VV78X070500.9, whole genome...    44   8.3    1
(GC697835) Sequence 13080 from patent US 6812339.                  44   8.3    1
(EF524836) Crocidura lusitania voucher IZEA3116 16S ribosoma...    44   8.3    1
(EF524806) Crocidura lusitania voucher IZEA3115 16S ribosoma...    44   8.3    1
(AL079334) Human DNA sequence from clone RP1-300O13 on chrom...    44   8.3    1
(AC120823) Rattus norvegicus clone CH230-48H23, *** SEQUENCI...    44   8.3    1
(AC115151) Rattus norvegicus clone CH230-108E12, *** SEQUENC...    44   8.3    1
(AC111898) Rattus norvegicus clone CH230-58C3, *** SEQUENCIN...    44   8.3    1
(CU469501) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   8.3    1
(CR940352) Theileria annulata genomic DNA chromosome 3.            44   8.3    1
(CR762490) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   8.3    1
(AC180309) Strongylocentrotus purpuratus clone R3-3008O17, W...    44   8.3    1
(AC171964) Bos taurus clone CH240-266D24, WORKING DRAFT SEQU...    44   8.3    1
(AC171475) Bos taurus clone CH240-68F15, WORKING DRAFT SEQUE...    44   8.3    1
(AC167311) Sorex araneus clone SA_Ba-243B3, WORKING DRAFT SE...    44   8.3    1
(AC163593) Bos taurus clone CH240-125I5, WORKING DRAFT SEQUE...    44   8.3    1
(FH207293) CHO_OF3096xo21f1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   8.3    1
(ER509798) 1093015436574 Global-Ocean-Sampling_GS-35-01-01-1...    44   8.3    1
(EK230976) 1095460179239 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.3    1
(ED380811) AUAC-aas66h11.g1 Ascaris suum whole genome shotgu...    44   8.3    1
(DU594085) OO__Ba0088O06.f OO__Ba Oryza officinalis genomic ...    44   8.3    1
(DU045027) 152702 Tomato HindIII BAC Library Solanum lycoper...    44   8.3    1
(CC231265) CH261-32P14_RM1.1 CH261 Gallus gallus genomic clo...    44   8.3    1
(EC822478) SME00001148 esmbsro2 Sawyeria marylandensis cDNA,...    44   8.3    1
(AJ935547) Theileria annulata EST, clone ta0096E02_b.              44   8.3    1
(CB481476) jns78_B05.f jns Sus scrofa cDNA 5', mRNA sequence.      44   8.3    1
(GE611697) CCPX8503.b1_M13.ab1 CCP(UWX) Globe Artichoke Cyna...    44   8.3    1
(EY637226) CAWW3160.fwd CAWW Capitella sp. I ECS-2004 Subtra...    44   8.3    1
(EY637225) CAWW3160.rev CAWW Capitella sp. I ECS-2004 Subtra...    44   8.3    1
(EY623849) CAWW1821.fwd CAWW Capitella sp. I ECS-2004 Subtra...    44   8.3    1
(EY623848) CAWW1821.rev CAWW Capitella sp. I ECS-2004 Subtra...    44   8.3    1
(EY515100) CAPF12329.fwd CAPF Capitella sp. I ECS-2004 whole...    44   8.3    1
(EY515099) CAPF12329.rev CAPF Capitella sp. I ECS-2004 whole...    44   8.3    1
(EY265349) BF01038A1C12.f1 Normalized subtracted keck librar...    44   8.3    1
(EW302584) ruio07_n18.y1 kid Sus scrofa cDNA 5', mRNA sequence.    44   8.3    1
(EU255915) Lactococcus lactis subsp. lactis clone z1990 geno...    44   8.3    1
(CP001357) Brachyspira hyodysenteriae WA1, complete genome.        44   8.3    1
(CP000885) Clostridium phytofermentans ISDg, complete genome.      44   8.3    1
(AY027775) Brachyspira hyodysenteriae variable surface prote...    44   8.3    1
(AE005176) Lactococcus lactis subsp. lactis Il1403, complete...    44   8.3    1
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...    34   8.4    4
(AC220439) Bos taurus clone CH240-358E18, WORKING DRAFT SEQU...    40   9.2    3
(BQ454707) ke09b12.y1 Dirofilaria immitis adult pAMP1 v1 Dir...    34   9.5    2
(AM285321) Spiroplasma citri GII3-3X chromosome, contig Cont...    40   9.8    5

>(C84695) Dictyostelium discoideum slug cDNA, clone SSE636.
          Length = 488

 Score =  630 bits (318), Expect(3) = 0.0
 Identities = 318/318 (100%)
 Strand = Plus / Plus


Query: 307 cgattttagatataattgtaccaaaagaatttaatcaagatttattatcatcaattaatg 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cgattttagatataattgtaccaaaagaatttaatcaagatttattatcatcaattaatg 60


Query: 367 gttcgataataaatttaaatttcattttaccaaatcaaagctttgtttcaacaattaaat 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gttcgataataaatttaaatttcattttaccaaatcaaagctttgtttcaacaattaaat 120


Query: 427 ttaaatttaatccaaaggatttagcaattaaagtggcttttcaattgggtgtatcggttg 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttaaatttaatccaaaggatttagcaattaaagtggcttttcaattgggtgtatcggttg 180


Query: 487 gtgagaccacaatttcaaatttctcaatcactggtgatcttcaattaggtttcactctag 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtgagaccacaatttcaaatttctcaatcactggtgatcttcaattaggtttcactctag 240


Query: 547 gtactgctaaacctgaatatatctctttcttggaggatccaatcattaactttgatttcg 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtactgctaaacctgaatatatctctttcttggaggatccaatcattaactttgatttcg 300


Query: 607 attcaactggtgttatca 624
           ||||||||||||||||||
Sbjct: 301 attcaactggtgttatca 318

 Score =  121 bits (61), Expect(3) = 0.0
 Identities = 61/61 (100%)
 Strand = Plus / Plus


Query: 668 tcaattagaaagagattagttcatccaaatagattttatttaccaagttcttaataggaa 727
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tcaattagaaagagattagttcatccaaatagattttatttaccaagttcttaataggaa 416


Query: 728 g 728
           |
Sbjct: 417 g 417

 Score = 71.9 bits (36), Expect(3) = 0.0
 Identities = 36/36 (100%)
 Strand = Plus / Plus


Query: 625 tatcaatttaattgataaatttgttaaaccaatctt 660
           ||||||||||||||||||||||||||||||||||||
Sbjct: 314 tatcaatttaattgataaatttgttaaaccaatctt 349

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 836,585,125
Number of extensions: 56428433
Number of successful extensions: 6185067
Number of sequences better than 10.0: 186
Length of query: 790
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 766
Effective length of database: 102,084,959,077
Effective search space: 78197078652982
Effective search space used: 78197078652982
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U05033-1 (Contig-U05033-1Q) /CSM_Contig/Contig-U05033-1Q.Seq.d
         (790 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008212_991(AP008212|pid:none) Oryza sativa (japonica cultivar-...    35   3.6
CP000250_4377(CP000250|pid:none) Rhodopseudomonas palustris HaA2...    34   4.7
AE016818_493(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    32   7.2

>AP008212_991(AP008212|pid:none) Oryza sativa (japonica
           cultivar-group) genomic DNA, chromosome 6.
          Length = 492

 Score = 34.7 bits (78), Expect = 3.6
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
 Frame = +3

Query: 375 INLNFILPNQSFVSTI-----KFKFNPKDLAIKVAFQLGVSVGETTISNFSITGDLQLGF 539
           IN NF   ++S+ S+I       ++N KD   K   Q+G   GE    +  I  DL + F
Sbjct: 257 INRNFRSSSKSYASSIIKRLTSMRYNYKDGVRKHIIQMGAMNGELKSMDMGINDDLLVHF 316

Query: 540 TLGTAKPEYISFLEDPIINFD 602
            L +   ++ SF    IIN++
Sbjct: 317 ILSSLSSDFESF----IINYN 333

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 921,515,715
Number of extensions: 15204277
Number of successful extensions: 27065
Number of sequences better than 10.0: 3
Number of HSP's gapped: 27065
Number of HSP's successfully gapped: 4
Length of query: 263
Length of database: 1,061,185,681
Length adjustment: 126
Effective length of query: 137
Effective length of database: 649,361,233
Effective search space: 88962488921
Effective search space used: 88962488921
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.80  gvh: 0.37  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.11  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U05033-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0