>Contig-U05016-1 (Contig-U05016-1Q) /CSM_Contig/Contig-U05016-1Q.Seq.d
ATTTATTTATATACACTTTATAAAGAAAATAAAAAATGTTAATCCCAGAA
GATGATAAACTCGATGACGAGAAAATGATAAATATAGCAAAAAAACTATG
GTTTATTGGTTTCTTTTTCTTACCATGGGTTTGGTTAATTAACATTTTAT
ATTTTATACCATATAGAAATTCTTTGAATGATAAAGTAAAATGGTATTTA
AAATTCTCATTAATTGGATTTTTAGGATATTCAACCATTTTCATGGGTTG
GATGGGTATTTATTTAGTAAATAGAAATAAATGGGGTGCATTTGGTGATG
ATATTTCAATTACTATCCCATTTGGCTAATTTTTAGTGAAAAAGAATTAA
AATATATACACATATTTAACTTGTATCATAATTAATAACTATAGAAGAAA
AAAAATAATGAAAAAAAAAAAAAAAAAACAAAGTAAAGAATTTAATTGTA
TATAATAAATAAAAGTACAAAAACCAAAAATGGTCTATTATTATTATTAT
TATTATATTATTGTTATTATGATTATTGGTGTAAATAAATAAATAAATAA
AAGTTAACAAAAATTCTCATAAATTTGATTCAAAT

est1=SSF425E,1,573
est2=SSE544E,16,586
est3=VSC549Z,20,590

lfiytl*rk*KMLIPEDDKLDDEKMINIAKKLWFIGFFFLPWVWLINILYFIPYRNSLND
KVKWYLKFSLIGFLGYSTIFMGWMGIYLVNRNKWGAFGDDISITIPFG*flvkkn*niyt
yltciiinnyrrkkimkkkkkkqskefnci**ikvqkpkmvyyyyyyyiivimiigvnk*
inks*qkfs*i*fk

Frame A:
iylytlykenkkc*sqkminsmtrk**i*qknygllvsfsyhgfg*ltfyilyhieil*m
ik*ngi*nsh*ldf*diqpfswvgwvfi**ieingvhlvmifqllshlanf**krikiyt
hi*lvs*litieekk**kkkkknkvknlivynk*kyknqkwsiiiiiiillll*llv*in
k*ikvnknshkfdsn


Frame B:
fiyihfikkiknvnprr**tr*rendkyskktmvywflfltmglvn*hfifyti*kffe*
*skmvfkilinwifrifnhfhgldgylfsk*k*mgciw**yfnyypiwlifsekelkyih
ifnlyhn**l*kkknnekkkkktk*ri*lyiinkstktknglllllllyycyydywck*i
nk*kltkilinliq


Frame C:
lfiytl*rk*KMLIPEDDKLDDEKMINIAKKLWFIGFFFLPWVWLINILYFIPYRNSLND
KVKWYLKFSLIGFLGYSTIFMGWMGIYLVNRNKWGAFGDDISITIPFG*flvkkn*niyt
yltciiinnyrrkkimkkkkkkqskefnci**ikvqkpkmvyyyyyyyiivimiigvnk*
inks*qkfs*i*fk

Query= Contig-U05016-1 (Contig-U05016-1Q)
/CSM_Contig/Contig-U05016-1Q.Seq.d
         (585 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05016-1 (Contig-U05016-1Q) /CSM_Contig/Conti...   745  0.0
Contig-U13002-1 (Contig-U13002-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U09136-1 (Contig-U09136-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U13094-1 (Contig-U13094-1Q) /CSM_Contig/Conti...    36  0.041
Contig-U12584-1 (Contig-U12584-1Q) /CSM_Contig/Conti...    36  0.041
Contig-U11532-1 (Contig-U11532-1Q) /CSM_Contig/Conti...    36  0.041
Contig-U09509-1 (Contig-U09509-1Q) /CSM_Contig/Conti...    36  0.041
Contig-U09500-1 (Contig-U09500-1Q) /CSM_Contig/Conti...    36  0.041
Contig-U09265-1 (Contig-U09265-1Q) /CSM_Contig/Conti...    36  0.041
Contig-U03062-1 (Contig-U03062-1Q) /CSM_Contig/Conti...    36  0.041

>Contig-U05016-1 (Contig-U05016-1Q) /CSM_Contig/Contig-U05016-1Q.Seq.d
          Length = 585

 Score =  745 bits (376), Expect = 0.0
 Identities = 390/397 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttatttatatacactttataaagaaaataaaaaatgttaatcccagaagatgataaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atttatttatatacactttataaagaaaataaaaaatgttaatcccagaagatgataaac 60

                                                                       
Query: 61  tcgatgacgagaaaatgataaatatagcnnnnnnnctatggtttattggtttctttttct 120
           ||||||||||||||||||||||||||||       |||||||||||||||||||||||||
Sbjct: 61  tcgatgacgagaaaatgataaatatagcaaaaaaactatggtttattggtttctttttct 120

                                                                       
Query: 121 taccatgggtttggttaattaacattttatattttataccatatagaaattctttgaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taccatgggtttggttaattaacattttatattttataccatatagaaattctttgaatg 180

                                                                       
Query: 181 ataaagtaaaatggtatttaaaattctcattaattggatttttaggatattcaaccattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ataaagtaaaatggtatttaaaattctcattaattggatttttaggatattcaaccattt 240

                                                                       
Query: 241 tcatgggttggatgggtatttatttagtaaatagaaataaatggggtgcatttggtgatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcatgggttggatgggtatttatttagtaaatagaaataaatggggtgcatttggtgatg 300

                                                                       
Query: 301 atatttcaattactatcccatttggctaatttttagtgaaaaagaattaaaatatataca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atatttcaattactatcccatttggctaatttttagtgaaaaagaattaaaatatataca 360

                                                
Query: 361 catatttaacttgtatcataattaataactatagaag 397
           |||||||||||||||||||||||||||||||||||||
Sbjct: 361 catatttaacttgtatcataattaataactatagaag 397


 Score =  113 bits (57), Expect = 2e-25
 Identities = 57/57 (100%)
 Strand = Plus / Plus

                                                                    
Query: 429 caaagtaaagaatttaattgtatataataaataaaagtacaaaaaccaaaaatggtc 485
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 caaagtaaagaatttaattgtatataataaataaaagtacaaaaaccaaaaatggtc 485


 Score = 28.2 bits (14), Expect = 9.9
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                             
Query: 138 attaacattttatatttt 155
           ||||||||||| ||||||
Sbjct: 43  attaacattttttatttt 26


 Score = 28.2 bits (14), Expect = 9.9
 Identities = 17/18 (94%)
 Strand = Plus / Minus

                             
Query: 26  aaaataaaaaatgttaat 43
           |||||| |||||||||||
Sbjct: 155 aaaatataaaatgttaat 138


>Contig-U13002-1 (Contig-U13002-1Q) /CSM_Contig/Contig-U13002-1Q.Seq.d
          Length = 149

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 449 tatataataaataaaagtacaaa 471
           |||||||||||||||| ||||||
Sbjct: 100 tatataataaataaaattacaaa 78


>Contig-U09136-1 (Contig-U09136-1Q) /CSM_Contig/Contig-U09136-1Q.Seq.d
          Length = 693

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Plus

                                      
Query: 3   ttatttatatacactttataaagaaaa 29
           ||||||||||||| |||||||||||||
Sbjct: 665 ttatttatataca-tttataaagaaaa 690


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,498
Number of Sequences: 6905
Number of extensions: 16498
Number of successful extensions: 1849
Number of sequences better than 10.0: 529
length of query: 585
length of database: 5,674,871
effective HSP length: 16
effective length of query: 569
effective length of database: 5,564,391
effective search space: 3166138479
effective search space used: 3166138479
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)

Query= Contig-U05016-1 (Contig-U05016-1Q) /CSM_Contig/Contig-U05016-1Q.Seq.d
         (585 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C92437) Dictyostelium discoideum slug cDNA, clone SSE544.        599   0.0    2
(AU262638) Dictyostelium discoideum vegetative cDNA clone:VS...   585   0.0    2
(C92992) Dictyostelium discoideum slug cDNA, clone SSF425.        474   e-129  1
(AU072924) Dictyostelium discoideum slug cDNA, clone SSF425.      287   e-119  2
(AE014188) Plasmodium falciparum 3D7 chromosome 12, complete...    40   2e-04  11
(AC027073) Homo sapiens chromosome 1 clone RP11-213E12 map 1...    40   0.002  5
(AL844504) Plasmodium falciparum 3D7 chromosome 5.                 38   0.025  13
(CU915583) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.030  6
(AC200426) Pongo abelii BAC clone CH276-522E18 from chromoso...    46   0.044  6
(AL844509) Plasmodium falciparum 3D7 chromosome 13.                36   0.059  10
(CU914528) S.lycopersicum DNA sequence from clone LE_HBa-27B...    46   0.073  5
(AL844505) Plasmodium falciparum 3D7 chromosome 6.                 34   0.083  11
(AC006280) Plasmodium falciparum chromosome 12 clone PFYAC72...    38   0.090  9
(BX664625) Zebrafish DNA sequence from clone DKEY-286J17 in ...    36   0.098  4
(AM480994) Vitis vinifera contig VV78X111406.1, whole genome...    50   0.098  1
(AC117170) Rattus norvegicus clone CH230-20P9, *** SEQUENCIN...    50   0.098  1
(AC106629) Rattus norvegicus clone CH230-218O2, WORKING DRAF...    50   0.098  1
(CZ541559) SRAA-aad39a08.b1 Strongyloides ratti whole genome...    50   0.098  1
(AL844508) Plasmodium falciparum 3D7 chromosome 9.                 34   0.12   12
(AE014186) Plasmodium falciparum 3D7 chromosome 11, complete...    34   0.14   11
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    32   0.16   8
(AL355476) Human DNA sequence from clone RP11-517O1 on chrom...    46   0.20   4
(BJ410407) Dictyostelium discoideum cDNA clone:ddv12m11, 5' ...    34   0.29   2
(BJ323741) Dictyostelium discoideum cDNA clone:dda12d04, 5' ...    34   0.29   2
(BJ415041) Dictyostelium discoideum cDNA clone:ddv21b10, 5' ...    34   0.29   2
(BJ360607) Dictyostelium discoideum cDNA clone:ddc6o20, 5' e...    34   0.29   2
(BJ361186) Dictyostelium discoideum cDNA clone:ddc16h05, 5' ...    34   0.29   2
(AU263675) Dictyostelium discoideum vegetative cDNA clone:VS...    34   0.29   2
(BJ364131) Dictyostelium discoideum cDNA clone:ddc30j03, 5' ...    34   0.29   2
(BJ361425) Dictyostelium discoideum cDNA clone:ddc17h05, 5' ...    34   0.29   2
(BJ360259) Dictyostelium discoideum cDNA clone:ddc5n06, 5' e...    34   0.29   2
(BJ360404) Dictyostelium discoideum cDNA clone:ddc5n21, 5' e...    34   0.29   2
(BJ361869) Dictyostelium discoideum cDNA clone:ddc19k05, 5' ...    34   0.29   2
(BJ410676) Dictyostelium discoideum cDNA clone:ddv1o10, 5' e...    34   0.29   2
(BJ361196) Dictyostelium discoideum cDNA clone:ddc16k03, 5' ...    34   0.29   2
(BJ364180) Dictyostelium discoideum cDNA clone:ddc30a17, 5' ...    34   0.29   2
(BJ360300) Dictyostelium discoideum cDNA clone:ddc5n09, 5' e...    34   0.29   2
(BJ328061) Dictyostelium discoideum cDNA clone:dda22e19, 5' ...    34   0.29   2
(BJ362574) Dictyostelium discoideum cDNA clone:ddc22b13, 5' ...    34   0.29   2
(BJ358352) Dictyostelium discoideum cDNA clone:ddc1m01, 5' e...    34   0.29   2
(BJ360532) Dictyostelium discoideum cDNA clone:ddc6g15, 5' e...    34   0.29   2
(BJ360441) Dictyostelium discoideum cDNA clone:ddc6j05, 5' e...    34   0.29   2
(BJ326756) Dictyostelium discoideum cDNA clone:dda17k24, 5' ...    34   0.29   2
(BJ358886) Dictyostelium discoideum cDNA clone:ddc11e22, 5' ...    34   0.29   2
(BJ327885) Dictyostelium discoideum cDNA clone:dda22i06, 5' ...    34   0.29   2
(BJ327979) Dictyostelium discoideum cDNA clone:dda22o12, 5' ...    34   0.29   2
(BJ359936) Dictyostelium discoideum cDNA clone:ddc3i12, 5' e...    34   0.29   2
(BJ389000) Dictyostelium discoideum cDNA clone:dds17g01, 5' ...    34   0.29   2
(BJ387805) Dictyostelium discoideum cDNA clone:dds5i02, 5' e...    34   0.30   2
(BJ358803) Dictyostelium discoideum cDNA clone:ddc11o08, 5' ...    34   0.30   2
(BJ387217) Dictyostelium discoideum cDNA clone:dds12j23, 5' ...    34   0.30   2
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       34   0.35   9
(AC180631) Strongylocentrotus purpuratus clone R3-3090I4, WO...    40   0.38   4
(CR848812) Zebrafish DNA sequence from clone DKEY-193B18 in ...    48   0.39   1
(CU468192) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.39   1
(CT799717) Paramecium tetraurelia 5-PRIME EST from clone LK0...    48   0.39   1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    36   0.41   9
(AC202816) Macaca mulatta clone CH250-336K6, WORKING DRAFT S...    42   0.43   4
(AC159218) Pan troglodytes BAC clone CH251-59O2 from chromos...    46   0.45   3
(AC138944) Homo sapiens chromosome 16 clone RP11-775J13, WOR...    38   0.50   5
(CP000939) Clostridium botulinum B1 str. Okra, complete genome.    38   0.53   13
(AC189351) Brassica rapa subsp. pekinensis clone KBrB043F18,...    36   0.60   7
(Z93014) Human DNA sequence *** SEQUENCING CANCELLED *** fro...    46   0.74   4
(FH224569) CHO_OF3392xi13f1.ab1 CHO_OF3 Nicotiana tabacum ge...    42   0.74   2
(AC159108) Pan troglodytes BAC clone CH251-550P7 from chromo...    46   0.76   4
(CU468024) Pig DNA sequence from clone CH242-378C1 on chromo...    36   0.82   2
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    34   0.82   7
(CU856691) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.82   2
(FH184987) CHO_OF3427xl01r1.ab1 CHO_OF3 Nicotiana tabacum ge...    42   0.82   2
(AC145317) Homo sapiens chromosome 16 clone RP11-1222K13, WO...    38   0.83   5
(AC189850) Sorex araneus clone SA_Ba-570O19, WORKING DRAFT S...    46   0.84   4
(AC205045) Pongo abelii BAC clone CH276-259E10 from chromoso...    46   0.86   4
(EL926757) NY4Tr1_1_D02.g1_A039 NY4 trophonts (NY4Tr1) Ichth...    38   0.93   2
(AP003936) Oryza sativa Japonica Group genomic DNA, chromoso...    38   0.99   3
(FP088180) Brassica napus GSS, clone JBnB152D01, end read, p...    32   1.1    3
(BJ388525) Dictyostelium discoideum cDNA clone:dds6a03, 5' e...    32   1.1    2
(AP008999) Bombyx mori genomic DNA, chromosome 16, BAC clone...    34   1.1    6
(AC167304) Sorex araneus clone SA_Ba-101O24, WORKING DRAFT S...    46   1.2    5
(AC145612) Homo sapiens chromosome UNK clone RP11-1265E20, *...    38   1.2    4
(AC026085) Homo sapiens chromosome X clone RP11-517O1, WORKI...    46   1.3    3
(AC205743) Nomascus leucogenys leucogenys clone CH271-283P7,...    46   1.4    4
(AP004556) Oryza sativa Japonica Group genomic DNA, chromoso...    38   1.4    3
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete...    36   1.5    11
(BX649368) Zebrafish DNA sequence from clone CH211-191A16 in...    46   1.5    1
(AC158364) Mus musculus BAC clone RP23-187J8 from chromosome...    46   1.5    1
(AP010893) Solanum lycopersicum DNA, chromosome 8, clone: C0...    46   1.5    1
(GP384889) Sequence 31621 from patent US 7511127.                  46   1.5    1
(GP098064) Sequence 31621 from patent US 7468248.                  46   1.5    1
(AL592218) Human DNA sequence from clone RP5-1033M2 on chrom...    46   1.5    1
(FP017203) Medicago truncatula chromosome 5 clone mth4-9a24,...    46   1.5    1
(CU929465) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.5    1
(CU468991) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.5    1
(AC079421) Mus musculus chromosome 16 clone RP23-105J18, WOR...    46   1.5    1
(CU463906) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.5    1
(AC222163) Bos taurus clone CH240-410P4, WORKING DRAFT SEQUE...    46   1.5    1
(AC218202) Bos taurus clone CH240-291C2, WORKING DRAFT SEQUE...    46   1.5    1
(AC216701) Solanum lycopersicum chromosome 7 clone C07SLe010...    46   1.5    1
(AC180352) Strongylocentrotus purpuratus clone R3-3118A23, W...    46   1.5    1
(AC176734) Strongylocentrotus purpuratus clone R3-3096O20, W...    46   1.5    1
(EK500629) 1095505209118 Global-Ocean-Sampling_GS-32-01-01-1...    46   1.5    1
(CT435142) Sus scrofa genomic clone CH242-310F22, genomic su...    46   1.5    1
(CL109819) ISB1-52E4_Sp6.1 ISB1 Xenopus (Silurana) tropicali...    46   1.5    1
(DK449926) Drosophila simulans mRNA, adult full-length cDNA ...    46   1.5    1
(CN678364) E0109H09-5 NIA Mouse Embryonic Stem (ES) cell (Li...    46   1.5    1
(FF438608) G142P60235RE3.T0 Acorn worm juvenile pCMVSport6 l...    46   1.5    1
(FF420407) G125P60026RA1.T0 Acorn worm blastula/gastrula pCM...    46   1.5    1
(FH456657) CHO_OF4849xo22r1.ab1 CHO_OF4 Nicotiana tabacum ge...    40   1.7    2
(AC132445) Mus musculus BAC clone RP23-173F23 from chromosom...    38   1.8    3
(EL499494) PFLAB1-S_F3_-P7A_D11_07.AB1 Blood stage Plasmodiu...    30   1.8    3
(AC189364) Brassica rapa subsp. pekinensis clone KBrB046C11,...    42   1.8    3
(AC007418) Drosophila melanogaster clone BACR16P22, complete...    44   1.8    4
(AC141118) Rattus norvegicus clone CH230-525P6, WORKING DRAF...    40   1.9    2
(AC222329) Bos taurus clone CH240-415D17, WORKING DRAFT SEQU...    38   1.9    4
(CP000236) Ehrlichia chaffeensis str. Arkansas, complete gen...    44   2.0    12
(CU856120) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   2.1    4
(AC165559) Bos taurus clone CH240-172N12, WORKING DRAFT SEQU...    40   2.1    4
(EJ998722) 1093025005308 Global-Ocean-Sampling_GS-30-02-01-1...    42   2.1    2
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)...    32   2.1    10
(EL927640) NY4Tr1_11_D02.g1_A039 NY4 trophonts (NY4Tr1) Icht...    38   2.3    2
(EI344789) GM_WBc0090B15.f GM_WBc Glycine max genomic clone ...    38   2.3    2
(AC230650) Bos taurus clone CH240-502H4, WORKING DRAFT SEQUE...    40   2.3    4
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    32   2.4    10
(AL844506) Plasmodium falciparum 3D7 chromosome 7.                 32   2.5    11
(AI264134) qk03b03.x1 NCI_CGAP_Kid3 Homo sapiens cDNA clone ...    34   2.5    2
(AG403444) Mus musculus molossinus DNA, clone:MSMg01-260O13....    30   2.5    3
(AC083902) Homo sapiens BAC clone RP11-766F14 from 4, comple...    40   2.5    4
(AC004688) Plasmodium falciparum chromosome 12 clone PFYAC69...    34   2.6    9
(AL049181) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    32   2.8    8
(CR936466) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   2.9    6
(AL109814) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    34   2.9    6
(CP000726) Clostridium botulinum A str. ATCC 19397, complete...    38   3.0    16
(AF466146) Melipona bicolor mitochondrial genome, partial se...    34   3.0    3
(CR394556) Zebrafish DNA sequence from clone DKEY-79P17 in l...    34   3.1    2
(BX537285) Zebrafish DNA sequence from clone DKEY-225N3 in l...    42   3.1    6
(EK223420) 1095460149122 Global-Ocean-Sampling_GS-31-01-01-1...    38   3.3    2
(AC196330) Chlorocebus aethiops clone CH252-22H8, WORKING DR...    36   3.4    6
(AM460410) Vitis vinifera, whole genome shotgun sequence, co...    32   3.5    2
(AC149637) Medicago truncatula clone mth2-181h2, complete se...    38   3.5    6
(EJ117119) 1092343357779 Global-Ocean-Sampling_GS-27-01-01-1...    40   3.6    2
(AJ927985) Theileria annulata EST, clone tam012e11_q1k.            42   3.7    2
(AC005506) Plasmodium falciparum chromosome 12 clone PFYAC35...    34   3.7    8
(AC015160) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    42   3.7    5
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    38   3.8    6
(AC093628) Homo sapiens BAC clone RP11-98N20 from 4, complet...    32   3.9    6
(AG700778) Macaca fuscata fuscata DNA, clone: MSB2-139M06_R,...    34   4.0    2
(DH215490) Oryzias latipes Fosmid clone:GOLWFno541_f03, forw...    32   4.1    2
(BG602986) EST502076 Plasmodium yoelii sporozoite cDNA Plasm...    32   4.1    2
(AC015231) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   4.2    2
(CP001302) Borrelia garinii PBr plasmid PBr_lp36, complete s...    36   4.3    3
(CR391994) Zebrafish DNA sequence from clone DKEY-239B22.          38   4.4    4
(AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    34   4.4    9
(AC010563) Drosophila melanogaster 3L BAC RP98-9M20 (Roswell...    42   4.6    5
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI...    32   4.6    11
(DX911283) KBrH048E01F KBrH, Brassica rapa HindIII BAC libra...    32   4.6    3
(FP103106) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   4.7    4
(AC116032) Dictyostelium discoideum chromosome 2 map 4158743...    34   4.7    5
(CU570857) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   4.7    4
(AL033391) C.albicans cosmid Ca20C1.                               36   4.7    4
(EA265005) Sequence 19 from patent US 7241613.                     36   4.7    4
(AC171165) Medicago truncatula chromosome 7 BAC clone mte1-2...    38   4.9    4
(AC203598) Homo sapiens FOSMID clone ABC10-44586400K20 from ...    40   4.9    3
(CU570989) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   5.2    4
(AL022320) Human DNA sequence from clone RP1-199H16 on chrom...    36   5.2    3
(AF396542) Anatoecus sp. B isolate ANOooooB cytochrome oxida...    36   5.2    2
(AC231925) Medicago truncatula chromosome 7 clone mth2-25h7,...    42   5.3    4
(AC141067) Homo sapiens chromosome 16 clone RP11-1364L5, WOR...    38   5.7    5
(AC004063) Homo sapiens chromosome 4 clone B32I8, complete s...    32   6.0    7
(CU855923) Zebrafish DNA sequence from clone CH73-302C13 in ...    44   6.1    1
(BX682554) Zebrafish DNA sequence from clone DKEY-285G17 in ...    44   6.1    1
(BX255939) Zebrafish DNA sequence from clone DKEY-5G7 in lin...    44   6.1    1
(BX005334) Zebrafish DNA sequence from clone DKEY-61F9 in li...    44   6.1    1
(AL954308) Zebrafish DNA sequence from clone DKEY-13J15 in l...    44   6.1    1
(AC123930) Mus musculus BAC clone RP24-478K24 from chromosom...    44   6.1    1
(CU682349) M.truncatula DNA sequence from clone MTH2-90A5 on...    44   6.1    1
(AC195111) Medicago truncatula chromosome 7 BAC clone mth2-5...    44   6.1    1
(CQ600117) Sequence 27875 from Patent WO0171042.                   44   6.1    1
(CQ576237) Sequence 3995 from Patent WO0171042.                    44   6.1    1
(BD428933) Method and nucleic acids for pharmacogenomic meth...    44   6.1    1
(AX348412) Sequence 107 from Patent WO0202806.                     44   6.1    1
(X90986) D.melanogaster pipsqueak ORF-A short/long ORF-B.          44   6.1    1
(U48402) Drosophila melanogaster pipsqueak (psq) mRNA, alter...    44   6.1    1
(FN373252) Schistosoma mansoni genome sequence supercontig S...    44   6.1    1
(AY069588) Drosophila melanogaster LD33470 full length cDNA.       44   6.1    1
(AE013599) Drosophila melanogaster chromosome 2R, complete s...    44   6.1    1
(AC009208) Drosophila melanogaster clone BACR31I21, complete...    44   6.1    1
(AL157409) Human DNA sequence from clone RP5-823D19 on chrom...    44   6.1    1
(AC121340) Homo sapiens X BAC RP13-928P6 (Roswell Park Cance...    44   6.1    1
(AC128516) Rattus norvegicus clone CH230-28H2, *** SEQUENCIN...    44   6.1    1
(AC114190) Rattus norvegicus clone CH230-228M22, *** SEQUENC...    44   6.1    1
(AC112623) Rattus norvegicus clone CH230-145O15, *** SEQUENC...    44   6.1    1
(AC108983) Rattus norvegicus clone CH230-165O3, *** SEQUENCI...    44   6.1    1
(AC107515) Rattus norvegicus clone CH230-182L18, *** SEQUENC...    44   6.1    1
(FP340229) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.1    1
(FP312774) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.1    1
(FP236682) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.1    1
(CU694923) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.1    1
(CU467592) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.1    1
(CT961063) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   6.1    1
(CR925791) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.1    1
(AC236220) Glycine max strain Williams 82 clone GM_WBc0097C1...    44   6.1    1
(AC235905) Glycine max strain Williams 82 clone GM_WBc0205C0...    44   6.1    1
(AC232231) Zea mays chromosome 7 clone ZMMBBb-356B12; ZMMBBb...    44   6.1    1
(AC226562) Zea mays chromosome 7 clone ZMMBBb-234B18; ZMMBBb...    44   6.1    1
(AC221189) Bos taurus clone CH240-397H6, WORKING DRAFT SEQUE...    44   6.1    1
(AC212501) Macaca mulatta clone CH250-490J20, WORKING DRAFT ...    44   6.1    1
(AC190860) Zea mays chromosome 4 clone ZMMBBb-468G20; ZMMBBb...    44   6.1    1
(AC190847) Zea mays chromosome unknown clone CH201-200H24; Z...    44   6.1    1
(AC169295) Bos taurus clone CH240-222A10, WORKING DRAFT SEQU...    44   6.1    1
(BH480653) BOGUP14TR BOGU Brassica oleracea genomic clone BO...    44   6.1    1
(FH999780) CHO_OF6888xm11f1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   6.1    1
(FH673950) CHO_OF5042xn08f1.ab1 CHO_OF5 Nicotiana tabacum ge...    44   6.1    1
(FH169533) CHO_OF3382xg06r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   6.1    1
(ET927810) CHO_OF285xl16r1.ab1 CHO_OF Nicotiana tabacum geno...    44   6.1    1
(ET927735) CHO_OF285xl16f1.ab1 CHO_OF Nicotiana tabacum geno...    44   6.1    1
(ER951947) CH260-96F14_SP6 CHORI-260 Meleagris gallopavo gen...    44   6.1    1
(EK367980) 1095469405546 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.1    1
(AM624021) Entamoeba dispar GSS, clone dispar106a06.q1k.           44   6.1    1
(EJ435285) 1093015277381 Global-Ocean-Sampling_GS-28-01-01-1...    44   6.1    1
(ED784768) GM_WBb0165K06.f GM_WBb Glycine max genomic clone ...    44   6.1    1
(DU850407) 45420 Tomato HindIII BAC Library Solanum lycopers...    44   6.1    1
(DU791500) APKH4135.b2 HF770_12-21-03 uncultured marine micr...    44   6.1    1
(DH361395) Oryzias latipes Fosmid clone:GOLWFno741_n09, reve...    44   6.1    1
(BZ462399) BONIQ59TR BO_1.6_2_KB_tot Brassica oleracea genom...    44   6.1    1
(BZ055608) jnr27f05.g1 B.oleracea001 Brassica oleracea genom...    44   6.1    1
(EC249951) 414644 CK01 Drosophila melanogaster cDNA clone 16...    44   6.1    1
(EC235851) 326318 CK01 Drosophila melanogaster cDNA clone 75...    44   6.1    1
(EC234460) 295523 CK01 Drosophila melanogaster cDNA clone 54...    44   6.1    1
(EC230345) 61187 CK01 Drosophila melanogaster cDNA clone CK0...    44   6.1    1
(EC228533) 7264 CK01 Drosophila melanogaster cDNA clone CK01...    44   6.1    1
(EC228197) 500211 CK01 Drosophila melanogaster cDNA clone 27...    44   6.1    1
(EC223408) 307047 CK01 Drosophila melanogaster cDNA clone 61...    44   6.1    1
(EC207249) 50295 CK01 Drosophila melanogaster cDNA clone CK0...    44   6.1    1
(EC202437) 366450 CK01 Drosophila melanogaster cDNA clone 10...    44   6.1    1
(EC199678) 218375 CK01 Drosophila melanogaster cDNA clone 46...    44   6.1    1
(EC196998) 94045 CK01 Drosophila melanogaster cDNA clone CK0...    44   6.1    1
(EC082322) 121433 CK01 Drosophila melanogaster cDNA clone CK...    44   6.1    1
(DT718297) rscag0_006662 Zhikong scallop Chlamys farreri cha...    44   6.1    1
(DC223256) Plasmodium berghei strain ANKA cDNA clone:MZ00715...    44   6.1    1
(DB427759) Asterina pectinifera cDNA clone:apg2j22, 3' end.        44   6.1    1
(CO340564) EP10909.3prime Exelixis FlyTag CK02 pCDNA-SK+ Dro...    44   6.1    1
(CO323277) EK190101.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr...    44   6.1    1
(CO321628) EK186044.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr...    44   6.1    1
(CO317478) EK268327.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr...    44   6.1    1
(CO303948) EK243232.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr...    44   6.1    1
(CO294697) EK207462.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr...    44   6.1    1
(CO285931) EK061211.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr...    44   6.1    1
(CO284213) EK165517.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr...    44   6.1    1
(CO178569) EK057047.5prime Exelixis FlyTag CK01 pCDNA-SK+ Dr...    44   6.1    1
(CK362209) AGENCOURT_17083216 NIH_ZGC_4 Danio rerio cDNA clo...    44   6.1    1
(BQ973042) QHI11L03.yg.ab1 QH_ABCDI sunflower RHA801 Heliant...    44   6.1    1
(AW943189) LD33470.3prime LD Drosophila melanogaster embryo ...    44   6.1    1
(FG555723) BN18DYSC_UP_033_A02_18FEB2008_016 BN18DYSC Brassi...    44   6.1    1
(EV596610) Dmel_neb_012276_0865_2500 D. melanogaster - 454 s...    44   6.1    1
(BX957359) Zebrafish DNA sequence from clone DKEY-234E8 in l...    38   6.1    4
(EF457752) Gossypium arboreum alcohol dehydrogenase A gene, ...    36   6.2    4
(FP085551) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   6.2    4
(AC005083) Homo sapiens BAC clone CTA-281G5 from 7, complete...    42   6.3    2
(AM471308) Vitis vinifera contig VV78X207065.35, whole genom...    40   6.3    2
(DW341695) PP_LEc0005N09f Peach shoot Prunus persica cDNA cl...    34   6.3    3
(FP236762) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   6.3    3
(CR749771) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   6.4    5
(ER939464) AF__Bb0039H21r AF__Bb Aquilegia formosa genomic, ...    32   6.5    3
(AP001983) Homo sapiens genomic DNA, chromosome 11q clone:RP...    34   6.5    4
(AC125756) Rattus norvegicus clone CH230-42H3, WORKING DRAFT...    36   6.6    6
(AC161917) Bos taurus clone CH240-101E6, WORKING DRAFT SEQUE...    34   6.8    7
(AC173959) Glycine max clone gmw1-27d20, WORKING DRAFT SEQUE...    36   6.8    7
(AM439768) Vitis vinifera contig VV78X262800.10, whole genom...    32   6.9    3
(CU694488) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   6.9    4
(AC187328) Canis Familiaris chromosome 16, clone XX-28F20, c...    38   6.9    5
(CU138558) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   7.0    4
(AC186291) Solanum lycopersicum chromosome 5 clone C05HBa016...    36   7.0    3
(CU234121) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   7.3    2
(AU311007) Homo sapiens cDNA, clone:Nbla-24836, 3'end.             34   7.4    2
(CK822926) ij20b01.y5 Melton Normalized Human Islet 4 N4-HIS...    34   7.4    2
(BQ086234) ij20b01.y1 Melton Normalized Human Islet 4 N4-HIS...    34   7.4    2
(AC122684) Homo sapiens 12 BAC RP11-280I23 (Roswell Park Can...    38   7.4    5
(BX294667) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   7.5    4
(CK822925) ij20b01.x5 Melton Normalized Human Islet 4 N4-HIS...    34   7.7    2
(BF063077) 7h75h11.x1 NCI_CGAP_Co16 Homo sapiens cDNA clone ...    34   7.7    2
(AC230333) Bos taurus clone CH240-511M22, WORKING DRAFT SEQU...    36   7.7    4
(AC168906) Bos taurus clone CH240-214M12, WORKING DRAFT SEQU...    40   7.7    5
(CV845843) ID0AEE13BF11RM1 ID0AEE Acyrthosiphon pisum cDNA c...    40   7.8    2
(AC159824) Mus musculus BAC clone RP23-122E19 from chromosom...    40   7.8    3
(CP001360) Brachyspira hyodysenteriae WA1 plasmid pBHWA1, co...    32   7.8    5
(AC093443) Pan troglodytes clone RP43-78A3, WORKING DRAFT SE...    36   7.8    4
(AC220778) Bos taurus clone CH240-346O13, WORKING DRAFT SEQU...    40   7.8    4
(AC141455) Homo sapiens chromosome 16 clone RP11-448B11, WOR...    40   7.9    3
(AW338392) xw77d08.x1 NCI_CGAP_Pan1 Homo sapiens cDNA clone ...    34   7.9    2
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI...    34   8.3    8
(BU674185) UI-CF-DU0-aaa-f-18-0-UI.s1 UI-CF-DU0 Homo sapiens...    34   8.3    2
(AW471343) xw58b09.x1 NCI_CGAP_Pan1 Homo sapiens cDNA clone ...    34   8.4    2
(AA902441) ok90h08.s1 NCI_CGAP_Lu5 Homo sapiens cDNA clone I...    34   8.7    2
(AC214698) Callithrix jacchus clone CH259-418E23, WORKING DR...    38   8.7    6
(AC140864) Homo sapiens chromosome 16 clone RP11-1072P17, WO...    38   8.8    4
(CP001470) Borrelia spielmanii A14S plasmid A14S_lp28-4, com...    32   8.8    4
(AC233450) Solanum tuberosum chromosome 5 clone RH089C21, **...    34   8.8    4
(AI669353) ty31c12.x1 NCI_CGAP_Ut2 Homo sapiens cDNA clone I...    34   8.8    2
(BQ022873) UI-1-BB1p-axw-d-03-0-UI.s1 NCI_CGAP_Pl6 Homo sapi...    34   8.9    2
(AW088299) xd15e09.x1 NCI_CGAP_Ov23 Homo sapiens cDNA clone ...    34   8.9    2
(AC125793) Homo sapiens chromosome 16 clone CTD-3253I12, com...    40   8.9    3
(GC698368) Sequence 13613 from patent US 6812339.                  36   9.0    3
(AC161080) Bos taurus clone CH240-51A6, WORKING DRAFT SEQUEN...    38   9.0    5
(AC122161) Medicago truncatula clone mth2-11l3, complete seq...    40   9.0    3
(AC006281) Plasmodium falciparum chromosome 12 clone PFYACB8...    32   9.1    8
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         36   9.1    13
(AW473772) hb08b05.x1 NCI_CGAP_Ut3 Homo sapiens cDNA clone I...    34   9.1    2
(CU927997) S.lycopersicum DNA sequence from clone LE_HBa-64G...    34   9.2    4
(AP006162) Oryza sativa Japonica Group genomic DNA, chromoso...    36   9.2    4
(FG660008) G1142P39RP19.T0 Anolis carolinensis pooled normal...    34   9.3    2
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    34   9.4    7
(AW241806) xn75c07.x1 Soares_NFL_T_GBC_S1 Homo sapiens cDNA ...    34   9.4    2
(CU128590) Equus caballus GSS, BAC clone CH241-247F5, SP6 en...    40   9.5    2
(AC140878) Homo sapiens chromosome 16 clone RP11-1292F20, co...    38   9.8    3
(AC130175) Rattus norvegicus clone CH230-11F16, WORKING DRAF...    42   9.8    3
(AC226294) Monodelphis domestica clone VMRC18-11J12, WORKING...    36   9.8    6
(X95276) Plasmodium falciparum complete gene map of plastid-...    36   9.9    3

>(C92437) Dictyostelium discoideum slug cDNA, clone SSE544.
          Length = 566

 Score =  599 bits (302), Expect(2) = 0.0
 Identities = 302/302 (100%)
 Strand = Plus / Plus


Query: 96  ctatggtttattggtttctttttcttaccatgggtttggttaattaacattttatatttt 155
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  ctatggtttattggtttctttttcttaccatgggtttggttaattaacattttatatttt 140


Query: 156 ataccatatagaaattctttgaatgataaagtaaaatggtatttaaaattctcattaatt 215
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 ataccatatagaaattctttgaatgataaagtaaaatggtatttaaaattctcattaatt 200


Query: 216 ggatttttaggatattcaaccattttcatgggttggatgggtatttatttagtaaataga 275
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggatttttaggatattcaaccattttcatgggttggatgggtatttatttagtaaataga 260


Query: 276 aataaatggggtgcatttggtgatgatatttcaattactatcccatttggctaattttta 335
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aataaatggggtgcatttggtgatgatatttcaattactatcccatttggctaattttta 320


Query: 336 gtgaaaaagaattaaaatatatacacatatttaacttgtatcataattaataactataga 395
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgaaaaagaattaaaatatatacacatatttaacttgtatcataattaataactataga 380


Query: 396 ag 397
           ||
Sbjct: 381 ag 382

 Score =  145 bits (73), Expect(2) = 0.0
 Identities = 73/73 (100%)
 Strand = Plus / Plus


Query: 16 ctttataaagaaaataaaaaatgttaatcccagaagatgataaactcgatgacgagaaaa 75
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ctttataaagaaaataaaaaatgttaatcccagaagatgataaactcgatgacgagaaaa 60


Query: 76 tgataaatatagc 88
          |||||||||||||
Sbjct: 61 tgataaatatagc 73

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 740,175,804
Number of extensions: 56495940
Number of successful extensions: 5362746
Number of sequences better than 10.0: 319
Length of query: 585
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 562
Effective length of database: 102,190,702,835
Effective search space: 57431174993270
Effective search space used: 57431174993270
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U05016-1 (Contig-U05016-1Q) /CSM_Contig/Contig-U05016-1Q.Seq.d
         (585 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9NZ42) RecName: Full=Gamma-secretase subunit PEN-2; AltName: F...    72   8e-12
(Q9CQR7) RecName: Full=Gamma-secretase subunit PEN-2; AltName: F...    72   1e-11
(Q6QI68) RecName: Full=Gamma-secretase subunit PEN-2; AltName: F...    71   2e-11
BT082217_1(BT082217|pid:none) Anoplopoma fimbria clone afim-evh-...    67   4e-10
BT073035_1(BT073035|pid:none) Oncorhynchus mykiss clone omyk-evn...    66   6e-10
BT046961_1(BT046961|pid:none) Salmo salar clone ssal-eve-534-204...    65   1e-09
(Q86BE9) RecName: Full=Gamma-secretase subunit pen-2; AltName: F...    64   3e-09
AF512426_1(AF512426|pid:none) Drosophila melanogaster presenilin...    64   3e-09
BT048051_1(BT048051|pid:none) Salmo salar clone ssal-evf-505-123...    64   3e-09
(Q8JHF0) RecName: Full=Gamma-secretase subunit PEN-2; AltName: F...    64   4e-09
BC121544_1(BC121544|pid:none) Xenopus tropicalis presenilin enha...    64   4e-09
BC087298_1(BC087298|pid:none) Xenopus laevis hypothetical LOC495...    63   7e-09
BC092674_1(BC092674|pid:none) Danio rerio presenilin enhancer 2 ...    61   2e-08
BT079106_1(BT079106|pid:none) Esox lucius clone eluc-evq-508-099...    60   3e-08
BT080628_1(BT080628|pid:none) Caligus clemensi clone ccle-evs-51...    60   4e-08
EU934350_1(EU934350|pid:none) TSA: Anopheles darlingi AD-527 pre...    59   1e-07
BT075577_1(BT075577|pid:none) Osmerus mordax clone omor-eva-005-...    58   2e-07
EF082280_1(EF082280|pid:none) Picea sitchensis clone WS02719_J21...    53   5e-06
AK342709_1(AK342709|pid:none) Acyrthosiphon pisum ACYPI006208 mR...    46   9e-04
(Q9U357) RecName: Full=Gamma-secretase subunit pen-2; AltName: F...    44   0.004
CR954208_342(CR954208|pid:none) Ostreococcus tauri strain OTTH05...    39   0.10
BT049612_1(BT049612|pid:none) Salmo salar clone ssal-eve-001-083...    38   0.23
CP001146_1578(CP001146|pid:none) Dictyoglomus thermophilum H-6-1...    38   0.23
AF506028_20(AF506028|pid:none) Poncirus trifoliata citrus triste...    37   0.52
AM502251_202(AM502251|pid:none) Leishmania infantum chromosome 33.     37   0.52
AM494970_228(AM494970|pid:none) Leishmania braziliensis chromoso...    36   0.88
AE017198_96(AE017198|pid:none) Lactobacillus johnsonii NCC 533, ...    35   1.1
AY382608_10(AY382608|pid:none) Xiphinema americanum mitochondrio...    35   2.0
CP000812_1562(CP000812|pid:none) Thermotoga lettingae TMO, compl...    34   3.3
CP000607_1056(CP000607|pid:none) Chlorobium phaeovibrioides DSM ...    33   4.4
AM039951_167(AM039951|pid:none) Xanthomonas campestris pv. vesic...    33   5.7
CP001392_2142(CP001392|pid:none) Diaphorobacter sp. TPSY, comple...    33   7.5
AL078468_18(AL078468|pid:none) Arabidopsis thaliana DNA chromoso...    33   7.5
AC002343_17(AC002343|pid:none) Arabidopsis thaliana chromosome I...    33   7.5
(Q570S7) RecName: Full=Cellulose synthase-like protein G1;      ...    33   7.5
CP000474_181(CP000474|pid:none) Arthrobacter aurescens TC1, comp...    33   7.5
AE015927_1322(AE015927|pid:none) Clostridium tetani E88, complet...    32   9.7
CP001141_206(CP001141|pid:none) Phaeodactylum tricornutum CCAP 1...    32   9.7
CP000820_7063(CP000820|pid:none) Frankia sp. EAN1pec, complete g...    32   9.7

>(Q9NZ42) RecName: Full=Gamma-secretase subunit PEN-2; AltName:
           Full=Presenilin enhancer protein 2;
           &AF220053_1(AF220053|pid:none)
           &AK312233_1(AK312233|pid:none)
           &BC009575_1(BC009575|pid:none)
           &DQ893095_1(DQ893095|pid:none)
           &DQ896368_1(DQ896368|pid:none)
          Length = 101

 Score = 72.4 bits (176), Expect = 8e-12
 Identities = 33/98 (33%), Positives = 59/98 (60%), Gaps = 7/98 (7%)
 Frame = +3

Query: 54  DKLDDEKMINIAKKLWFIGFFFLPWVWLINILYFIPYRNSL-------NDKVKWYLKFSL 212
           +++ +E+ +N+ +K +  GF FLP++WL+NI +F  +R +          ++K Y+  S
Sbjct: 4   ERVSNEEKLNLCRKYYLGGFAFLPFLWLVNIFWF--FREAFLVPAYTEQSQIKGYVWRSA 61

Query: 213 IGFLGYSTIFMGWMGIYLVNRNKWGAFGDDISITIPFG 326
           +GFL +  +   W+ I+ + R +WGA GD +S TIP G
Sbjct: 62  VGFLFWVIVLTSWITIFQIYRPRWGALGDYLSFTIPLG 99

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 823,479,695
Number of extensions: 16316572
Number of successful extensions: 37950
Number of sequences better than 10.0: 39
Number of HSP's gapped: 37911
Number of HSP's successfully gapped: 40
Length of query: 195
Length of database: 1,061,185,681
Length adjustment: 122
Effective length of query: 73
Effective length of database: 662,435,025
Effective search space: 48357756825
Effective search space used: 48357756825
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

 psg: 0.75  gvh: 0.64  alm: 0.31  top: 0.80  tms: 0.07  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U05016-1 is nuc