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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05008-1
Contig ID Contig-U05008-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U05008-1 (Contig-U05008-1Q) /CSM_Contig/Contig-U05008-1Q.Seq.d
GTGAAAAACAAGCCAATGAATTATCAGAGAATGTTGAAAAATATTTGCAA
GATGTTGAATTAATTATCAGTTCACCATTAACAAGAGCTTATGTACAACC
AGAAGAGGATTTGGTAAATTTTTAAAAGAAAATTCAAATATTAAATGTTT
AGTTTCACCATTACATAGCGAAACCGTAATTACAAGTGATGATAATGGTA
GACCACGTTCAATCATTGAAAAGGAAAATCCAGATTTTAATTTTGGTGAT
TTACAAGAAAGATGGTGGTATTTACCATCATCAATTAAAGATGACCTTTC
AATAATTGACACTGAATTATACTTTAAAACTAATGGATATAAAGAACCAA
TAGAATCAATTTTACATCGTATTGAAGAATTTAAGAAATTCCTATTATCA
AGAAACGAGTCCACTATTGCTGTCGTTGGTCATTCAGATTTCTTTTATCA
CTTTTTCGATCGTTCCATTCCTCATATGAAAAATTGTCAAATTGTATCCT
GGTGTAGTGAAACAAATGAAAAAGTTTATATTACAAAATAAACATAATTT
TAGTATAATTAAAAATAAAAGTAAAAATAAAATAATAGTTTATGTAAATA
AAACTATATTTATTTATTTA
Gap no gap
Contig length 620
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3290167
End point 3290788
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05008
List of clone(s) 

est1=SSE472E,1,621
Translated Amino Acid sequence 
*ktsq*iirec*kifarc*INYQFTINKSLCTTRRGFGKFLKENSNIKCLVSPLHSETVI
TSDDNGRPRSIIEKENPDFNFGDLQERWWYLPSSIKDDLSIIDTELYFKTNGYKEPIESI
LHRIEEFKKFLLSRNESTIAVVGHSDFFYHFFDRSIPHMKNCQIVSWCSETNEKVYITK*
t*f*yn*k*k*k*nnslck*nyiylf
Translated Amino Acid sequence (All Frames) 
Frame A:
vknkpmnyqrmlknickmln*lsvhh*qelmynqkriw*ifkrkfky*mfsftit*rnrn
yk***w*ttfnh*kgksrf*fw*ftrkmvvftiin*r*pfnn*h*iil*n*wi*rtnrin
ftsy*ri*eipiikkrvhyccrwsfrfllslfrsfhssyeklsncilv**nk*kslyyki
niilv*lkikvkik**fm*iklylfi


Frame B:
*ktsq*iirec*kifarc*INYQFTINKSLCTTRRGFGKFLKENSNIKCLVSPLHSETVI
TSDDNGRPRSIIEKENPDFNFGDLQERWWYLPSSIKDDLSIIDTELYFKTNGYKEPIESI
LHRIEEFKKFLLSRNESTIAVVGHSDFFYHFFDRSIPHMKNCQIVSWCSETNEKVYITK*
t*f*yn*k*k*k*nnslck*nyiylf


Frame C:
ekqanelsenvekylqdveliisspltrayvqpeedlvnf*kkiqilnv*fhhyiakp*l
qvmimvdhvqslkrkiqililviykkdggiyhhqlkmtfq*ltlnytlklmdiknq*nqf
yivlknlrnsyyqetsplllslviqisfitfsivpfli*kivklypgvvkqmkkfilqnk
hnfsiiknksknkiivyvnktifiyl
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05008-1 (Contig-U05008-1Q)
/CSM_Contig/Contig-U05008-1Q.Seq.d
         (620 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05008-1 (Contig-U05008-1Q) /CSM_Contig/Conti...  1015  0.0
Contig-U13916-1 (Contig-U13916-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U12581-1 (Contig-U12581-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U11964-1 (Contig-U11964-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U05080-1 (Contig-U05080-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U13931-1 (Contig-U13931-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U06751-1 (Contig-U06751-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U12887-1 (Contig-U12887-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U11113-1 (Contig-U11113-1Q) /CSM_Contig/Conti...    36  0.043
Contig-U11926-1 (Contig-U11926-1Q) /CSM_Contig/Conti...    30  2.7

>Contig-U05008-1 (Contig-U05008-1Q) /CSM_Contig/Contig-U05008-1Q.Seq.d
          Length = 620

 Score = 1015 bits (512), Expect = 0.0
 Identities = 512/512 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgaaaaacaagccaatgaattatcagagaatgttgaaaaatatttgcaagatgttgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtgaaaaacaagccaatgaattatcagagaatgttgaaaaatatttgcaagatgttgaat 60

                                                                       
Query: 61  taattatcagttcaccattaacaagagcttatgtacaaccagaagaggatttggtaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taattatcagttcaccattaacaagagcttatgtacaaccagaagaggatttggtaaatt 120

                                                                       
Query: 121 tttaaaagaaaattcaaatattaaatgtttagtttcaccattacatagcgaaaccgtaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttaaaagaaaattcaaatattaaatgtttagtttcaccattacatagcgaaaccgtaat 180

                                                                       
Query: 181 tacaagtgatgataatggtagaccacgttcaatcattgaaaaggaaaatccagattttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tacaagtgatgataatggtagaccacgttcaatcattgaaaaggaaaatccagattttaa 240

                                                                       
Query: 241 ttttggtgatttacaagaaagatggtggtatttaccatcatcaattaaagatgacctttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttttggtgatttacaagaaagatggtggtatttaccatcatcaattaaagatgacctttc 300

                                                                       
Query: 301 aataattgacactgaattatactttaaaactaatggatataaagaaccaatagaatcaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aataattgacactgaattatactttaaaactaatggatataaagaaccaatagaatcaat 360

                                                                       
Query: 361 tttacatcgtattgaagaatttaagaaattcctattatcaagaaacgagtccactattgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tttacatcgtattgaagaatttaagaaattcctattatcaagaaacgagtccactattgc 420

                                                                       
Query: 421 tgtcgttggtcattcagatttcttttatcactttttcgatcgttccattcctcatatgaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgtcgttggtcattcagatttcttttatcactttttcgatcgttccattcctcatatgaa 480

                                           
Query: 481 aaattgtcaaattgtatcctggtgtagtgaaa 512
           ||||||||||||||||||||||||||||||||
Sbjct: 481 aaattgtcaaattgtatcctggtgtagtgaaa 512


 Score = 34.2 bits (17), Expect = 0.17
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 604 ctatatttatttattta 620
           |||||||||||||||||
Sbjct: 604 ctatatttatttattta 620


>Contig-U13916-1 (Contig-U13916-1Q) /CSM_Contig/Contig-U13916-1Q.Seq.d
          Length = 1314

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 5   aaaacaagccaatgaattat 24
           ||||||||||||||||||||
Sbjct: 261 aaaacaagccaatgaattat 280


>Contig-U12581-1 (Contig-U12581-1Q) /CSM_Contig/Contig-U12581-1Q.Seq.d
          Length = 1389

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 270  atttaccatcatcaattaaa 289
            ||||||||||||||||||||
Sbjct: 1079 atttaccatcatcaattaaa 1098


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,568
Number of Sequences: 6905
Number of extensions: 14568
Number of successful extensions: 3170
Number of sequences better than 10.0: 241
length of query: 620
length of database: 5,674,871
effective HSP length: 16
effective length of query: 604
effective length of database: 5,564,391
effective search space: 3360892164
effective search space used: 3360892164
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7. 7
Homology vs DNA 
Query= Contig-U05008-1 (Contig-U05008-1Q) /CSM_Contig/Contig-U05008-1Q.Seq.d
         (620 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU037936) Dictyostelium discoideum slug cDNA, clone SSE472.      426   0.0    3
(AU072425) Dictyostelium discoideum slug cDNA, clone SSE472.      299   e-123  2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    36   0.001  13
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    38   0.008  18
(CU464140) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.10   1
(EI928888) VUH2-79M13TV VUUBBa (VUH2) Vigna unguiculata geno...    50   0.10   1
(AC106205) Rattus norvegicus clone CH230-34B1, *** SEQUENCIN...    44   0.11   5
(AL772222) Mouse DNA sequence from clone RP23-242D18 on chro...    42   0.25   3
(EK062173) 1092960093830 Global-Ocean-Sampling_GS-31-01-01-1...    36   0.30   2
(AM444609) Vitis vinifera contig VV78X002492.18, whole genom...    40   0.39   3
(DH177286) Oryzias latipes Fosmid clone:GOLWFno455_k17, forw...    48   0.41   1
(BF578240) 602093066F1 NCI_CGAP_Co24 Mus musculus cDNA clone...    48   0.41   1
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         34   0.53   12
(AC198849) Spermophilus tridecemlineatus clone VMRC20-474A15...    44   0.73   5
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   0.81   9
(AM488295) Vitis vinifera contig VV78X062803.19, whole genom...    46   0.84   3
(AM479562) Vitis vinifera contig VV78X022747.5, whole genome...    36   0.96   2
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    34   1.0    11
(DX547924) GH_MBb0035N04f GH_MBb Gossypium hirsutum genomic ...    36   1.1    2
(ER447243) 1092963835370 Global-Ocean-Sampling_GS-35-01-01-1...    34   1.1    2
(ER503666) 1093015412121 Global-Ocean-Sampling_GS-35-01-01-1...    34   1.1    2
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    32   1.1    6
(CR396586) Zebrafish DNA sequence from clone DKEY-184A18 in ...    38   1.2    4
(CU302343) Medicago truncatula chromosome 5 clone mte1-48o9,...    42   1.2    4
(AC179984) Strongylocentrotus purpuratus clone R3-17K14, WOR...    36   1.6    6
(CU896555) Zebrafish DNA sequence from clone CH211-96B20 in ...    46   1.6    1
(BV253094) S234P6182FF4.T0 EnglishShepherd Canis familiaris ...    46   1.6    1
(EU124736) Solanum lycopersicum chromosome 3 clone C03HBa014...    46   1.6    1
(DQ418696) Descurainia kochii isolate D3 ribosomal protein S...    46   1.6    1
(AP009516) Solanum lycopersicum DNA, chromosome 8, clone: C0...    46   1.6    1
(AM448033) Vitis vinifera contig VV78X105271.7, whole genome...    46   1.6    1
(AC235793) Solanum lycopersicum chromosome 3 clone C03HBa003...    46   1.6    1
(AC137017) Rattus norvegicus clone CH230-unknown, *** SEQUEN...    46   1.6    1
(AC127618) Rattus norvegicus clone CH230-390H10, *** SEQUENC...    46   1.6    1
(AC091444) Rattus norvegicus clone CH230-1P20, *** SEQUENCIN...    46   1.6    1
(CT030040) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.6    1
(AC167989) Bos taurus clone CH240-209D20, WORKING DRAFT SEQU...    46   1.6    1
(EJ841615) 1093017835251 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.6    1
(EJ362171) 1092963691152 Global-Ocean-Sampling_GS-28-01-01-1...    46   1.6    1
(EJ056132) 1095456029605 Global-Ocean-Sampling_GS-26-01-01-1...    46   1.6    1
(DU014810) 291966 Tomato MboI BAC Library Solanum lycopersic...    46   1.6    1
(CT552160) A BAC library has been constructed from cultivar ...    46   1.6    1
(CT550335) A BAC library has been constructed from cultivar ...    46   1.6    1
(CD134307) MG1-0031T-R297-C08-U.G MG1-0031 Schistosoma manso...    46   1.6    1
(AI457632) tj63e11.x1 Soares_NSF_F8_9W_OT_PA_P_S1 Homo sapie...    46   1.6    1
(FK910651) EST_lsal_evj_948858 lsalevj mixed_tissue_mixed_st...    46   1.6    1
(EX174350) gmnblits_0018p11.pDNRF2 Gadus morhua liver therma...    46   1.6    1
(AM631069) Entamoeba dispar GSS, clone dispar63f06.p1k.            30   1.8    3
(U40028) Caenorhabditis elegans cosmid T05A7, complete seque...    42   1.9    2
(AC004485) Homo sapiens BAC clone CTB-118E13 from 7, complet...    40   1.9    5
(AC008110) Homo sapiens clone RP11-45A13, WORKING DRAFT SEQU...    38   1.9    6
(AC175799) Atelerix albiventris clone LB4-515I8, WORKING DRA...    42   1.9    2
(AC090168) Homo sapiens chromosome 18 clone RP11-125M20 map ...    40   2.0    3
(AM476144) Vitis vinifera, whole genome shotgun sequence, co...    38   2.0    4
(AC009455) Homo sapiens chromosome 18, clone RP11-169F17, co...    40   2.0    3
(AE001438) Clostridium acetobutylicum ATCC 824 megaplasmid p...    40   2.1    5
(CU807618) A BAC library has been constructed from PN40024 g...    32   2.5    3
(CU524145) Zebrafish DNA sequence from clone CH211-286C16 in...    32   2.6    5
(AL954663) Zebrafish DNA sequence from clone DKEY-47L19 in l...    44   2.7    3
(EB230068) PEG003-C-203658-501 Normalized Pedal-Pleural Gang...    42   2.7    2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    32   2.7    12
(CX315989) JGI_XZT66079.rev NIH_XGC_tropTad5 Xenopus (Silura...    34   3.0    2
(CX315990) JGI_XZT66079.fwd NIH_XGC_tropTad5 Xenopus (Silura...    34   3.1    2
(AC225525) Medicago truncatula clone mth2-143e6, WORKING DRA...    32   3.1    6
(AC122374) Mus musculus BAC clone RP23-468F24 from chromosom...    34   3.2    2
(CU406972) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   3.3    6
(AF159227) Homo sapiens chromosome 8 clone GS1-225N9 map 8q2...    36   3.6    6
(AF465305) Dictyostelium discoideum ABC transporter ABCA.3 (...    32   3.7    4
(ER369124) 1093022164606 Global-Ocean-Sampling_GS-34-01-01-1...    42   3.8    2
(CU467520) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   3.9    4
(ER558439) 1093015731100 Global-Ocean-Sampling_GS-36-01-01-2...    42   4.0    2
(EV831941) FTSBG63TF Tetrahymena thermophila SB210 cDNA libr...    38   4.1    2
(FM212915) Cotesia congregata HzNVORF140-like region.              32   4.2    4
(AZ256118) RPCI-23-439H16.TJ RPCI-23 Mus musculus genomic cl...    34   4.3    2
(AZ258533) RPCI-23-439P16.TJ RPCI-23 Mus musculus genomic cl...    34   4.3    2
(AC216424) Solanum lycopersicum chromosome 7 clone C07HBa017...    34   4.3    5
(ED799481) MG__Ba0058K12f MG__Ba Mimulus guttatus genomic, g...    38   4.5    2
(CU467802) Pig DNA sequence from clone CH242-82G5 on chromos...    32   4.6    5
(AC188082) Macaca mulatta chromosome UNK clone CH250-60H12, ...    38   4.9    5
(CC322772) TAM32-19C10_EC1.1 TAM32 Gallus gallus genomic clo...    32   5.1    3
(FP236601) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   5.3    3
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete...    38   5.7    3
(AM444797) Vitis vinifera, whole genome shotgun sequence, co...    36   6.2    3
(AC090592) Homo sapiens chromosome 11, clone RP11-405K6, com...    42   6.3    6
(CT956047) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   6.4    4
(AL731692) Mouse DNA sequence from clone RP23-245M18 on chro...    38   6.4    4
(AL929306) Zebrafish DNA sequence from clone CH211-145C5 in ...    44   6.4    1
(BV276813) S232P6102RA3.T0 Beagle Canis familiaris STS genom...    44   6.4    1
(AC158749) Mus musculus chromosome 7, clone RP23-285C18, com...    44   6.4    1
(AC116669) Mus musculus chromosome 9, clone RP23-181I6, comp...    44   6.4    1
(AP008210) Oryza sativa (japonica cultivar-group) genomic DN...    44   6.4    1
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN...    44   6.4    1
(AP003206) Oryza sativa Japonica Group genomic DNA, chromoso...    44   6.4    1
(AP002871) Oryza sativa Japonica Group genomic DNA, chromoso...    44   6.4    1
(AM483632) Vitis vinifera, whole genome shotgun sequence, co...    44   6.4    1
(AL606629) Oryza sativa genomic DNA, chromosome 4, BAC clone...    44   6.4    1
(EA743545) Sequence 14991 from patent US 7368527.                  44   6.4    1
(EA743544) Sequence 14990 from patent US 7368527.                  44   6.4    1
(EA695318) Sequence 74197 from patent US 7365185.                  44   6.4    1
(EA064758) Sequence 2583 from patent US 7171311.                   44   6.4    1
(DD417248) Diagnosis and Prognosis of Breast Cancer Patients.      44   6.4    1
(DD131997) Diagnosis and Prognosis of Breast Cancer Patients.      44   6.4    1
(DD051238) COMPOSITIONS AND METHODS FOR THE THERAPY AND DIAG...    44   6.4    1
(AX360670) Sequence 354 from Patent WO0202623.                     44   6.4    1
(GP322910) Sequence 2583 from patent US 7514209.                   44   6.4    1
(CU207367) Pig DNA sequence from clone CH242-424B17 on chrom...    44   6.4    1
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...    44   6.4    1
(AL138752) Human DNA sequence from clone RP11-3J10 on chromo...    44   6.4    1
(AC118717) Mus musculus clone RP24-153K2, WORKING DRAFT SEQU...    44   6.4    1
(CU856454) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.4    1
(AC073598) Homo sapiens chromosome 10 clone CTC-268N23, WORK...    44   6.4    1
(AC222835) Bos taurus clone CH240-436O10, WORKING DRAFT SEQU...    44   6.4    1
(AC221278) Bos taurus clone CH240-402D13, WORKING DRAFT SEQU...    44   6.4    1
(AC213389) Zea mays chromosome 8 clone CH201-62M2; ZMMBBc006...    44   6.4    1
(AC211641) Zea mays chromosome 2 clone ZMMBBb-144K2; ZMMBBb0...    44   6.4    1
(AC203994) Zea mays chromosome 2 clone CH201-265G18; ZMMBBc0...    44   6.4    1
(AC203823) Zea mays chromosome 2 clone CH201-27G9; ZMMBBc002...    44   6.4    1
(AC202637) Microcebus murinus clone CH257-394F13, WORKING DR...    44   6.4    1
(AC202243) Microcebus murinus clone CH257-485M10, WORKING DR...    44   6.4    1
(AC200287) Zea mays chromosome 6 clone CH201-489P16; ZMMBBc0...    44   6.4    1
(AC198475) Zea mays chromosome 8 clone ZMMBBb-588N7; ZMMBBb0...    44   6.4    1
(AC190914) Zea mays chromosome 2 clone CH201-528N13; ZMMBBc0...    44   6.4    1
(AC169334) Bos taurus clone CH240-230I3, WORKING DRAFT SEQUE...    44   6.4    1
(AC168194) Sorex araneus clone SA_Ba-507A18, WORKING DRAFT S...    44   6.4    1
(BH162270) ENTTQ69TR Entamoeba histolytica Sheared DNA Entam...    44   6.4    1
(EK267400) 1095462235882 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.4    1
(EK264916) 1095462218774 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.4    1
(EK186382) 1095458147524 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.4    1
(EK124719) 1092970404561 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.4    1
(AM683499) Entamoeba terrapinae GSS, clone terra254g02.q1k.        44   6.4    1
(AM634589) Entamoeba dispar GSS, clone dispar125h04.p1k.           44   6.4    1
(EJ381747) 1092963764359 Global-Ocean-Sampling_GS-28-01-01-1...    44   6.4    1
(EJ014432) 1095433012444 Global-Ocean-Sampling_GS-26-01-01-1...    44   6.4    1
(EI360898) GM_WBc0114F03.f GM_WBc Glycine max genomic clone ...    44   6.4    1
(ED997572) MUGQ_CH252P160P05Sp6_CN189_017 CHORI-252 Vervet M...    44   6.4    1
(ED947201) OA_CBa0157I18.f OA_CBa Oryza australiensis genomi...    44   6.4    1
(ED892526) OA_CBa0078L10.f OA_CBa Oryza australiensis genomi...    44   6.4    1
(DU521858) 1098609854104 CHORI-243 Ovis aries genomic clone ...    44   6.4    1
(CU181269) Equus caballus GSS, BAC clone CH241-332P21, SP6 e...    44   6.4    1
(CL993995) ZMMBHf0005o12.f ZMMBHf Zea mays genomic clone ZMM...    44   6.4    1
(CG161687) PUJBL61TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   6.4    1
(CG031863) PUIIE49TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   6.4    1
(CE739375) tigr-gss-dog-17000315813388 Dog Library Canis lup...    44   6.4    1
(CE678591) tigr-gss-dog-17000329502279 Dog Library Canis lup...    44   6.4    1
(CE621991) tigr-gss-dog-17000313638204 Dog Library Canis lup...    44   6.4    1
(CC013399) PUECM05TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   6.4    1
(EG961703) AU_Ich_016A_C06 Whole organism normalized cDNA li...    44   6.4    1
(EG961591) AU_Ich_015D_A07 Whole organism normalized cDNA li...    44   6.4    1
(EG961410) AU_Ich_015B_A07 Whole organism normalized cDNA li...    44   6.4    1
(EC819887) SME00005847 esmbsro2 Sawyeria marylandensis cDNA,...    44   6.4    1
(DN562880) 91045220 Sea Urchin primary mesenchyme cell cDNA ...    44   6.4    1
(CB045943) NISC_gf01e03.x1 NCI_CGAP_Kid12 Homo sapiens cDNA ...    44   6.4    1
(AI571177) tn43a12.x1 NCI_CGAP_Brn25 Homo sapiens cDNA clone...    44   6.4    1
(BQ022217) UI-1-BB1p-aka-c-01-0-UI.s1 NCI_CGAP_Pl6 Homo sapi...    44   6.4    1
(AI066692) oz87e02.x1 Soares_senescent_fibroblasts_NbHSF Hom...    44   6.4    1
(AA976778) oq20a02.s1 NCI_CGAP_GC4 Homo sapiens cDNA clone I...    44   6.4    1
(BM987029) UI-H-CO0-aqk-d-09-0-UI.s1 NCI_CGAP_Sub9 Homo sapi...    44   6.4    1
(GE881147) 1112934256870 BABEVCEREB-C-01-1-7KB Papio anubis ...    44   6.4    1
(GE874549) 1112870162130 BABEVCEREB-C-01-1-7KB Papio anubis ...    44   6.4    1
(FC165983) 1106908701782 BABEVPN-C-01-1-7KB Papio anubis cDN...    44   6.4    1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    44   6.4    1
(AC216668) Oryza officinalis clone OO__Ba0089G05, *** SEQUEN...    38   6.9    3
(BD138901) RibA.                                                   34   7.1    2
(AR166157) Sequence 3 from patent US 6280971.                      34   7.1    2
(AR123488) Sequence 3 from patent US 6171598.                      34   7.1    2
(AR069576) Sequence 3 from patent US 5891672.                      34   7.1    2
(EJ987883) 1093023025161 Global-Ocean-Sampling_GS-30-02-01-1...    38   7.5    2
(AB041992) Homo sapiens genomic DNA, chromosome 6q21, clone:...    40   7.6    4
(CU311194) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   7.6    5
(AC068886) Homo sapiens chromosome 3 clone RP11-502F18 map 3...    40   8.1    4
(AC207352) Zea mays chromosome 2 clone CH201-172J18; ZMMBBc0...    42   8.1    2
(CU928622) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   8.5    7
(EK057272) 1092960036836 Global-Ocean-Sampling_GS-31-01-01-1...    40   8.8    2
(CE650096) tigr-gss-dog-17000367362677 Dog Library Canis lup...    38   9.1    2
(AC197160) Pan troglodytes BAC clone CH251-322J19 from chrom...    40   9.2    4
(AC116310) Homo sapiens chromosome 5 clone RP11-203E6, compl...    34   9.2    5
(AL844504) Plasmodium falciparum 3D7 chromosome 5.                 36   9.2    5
(AC183493) Brassica oleracea Contig B, complete sequence.          32   9.6    8
(AC232057) Solanum tuberosum chromosome 5 clone RH076O08, **...    36   10.0   5

>(AU037936) Dictyostelium discoideum slug cDNA, clone SSE472.
          Length = 539

 Score =  426 bits (215), Expect(3) = 0.0
 Identities = 215/215 (100%)
 Strand = Plus / Plus


Query: 89  ttatgtacaaccagaagaggatttggtaaatttttaaaagaaaattcaaatattaaatgt 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttatgtacaaccagaagaggatttggtaaatttttaaaagaaaattcaaatattaaatgt 60


Query: 149 ttagtttcaccattacatagcgaaaccgtaattacaagtgatgataatggtagaccacgt 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttagtttcaccattacatagcgaaaccgtaattacaagtgatgataatggtagaccacgt 120


Query: 209 tcaatcattgaaaaggaaaatccagattttaattttggtgatttacaagaaagatggtgg 268
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaatcattgaaaaggaaaatccagattttaattttggtgatttacaagaaagatggtgg 180


Query: 269 tatttaccatcatcaattaaagatgacctttcaat 303
           |||||||||||||||||||||||||||||||||||
Sbjct: 181 tatttaccatcatcaattaaagatgacctttcaat 215

 Score =  408 bits (206), Expect(3) = 0.0
 Identities = 206/206 (100%)
 Strand = Plus / Plus


Query: 304 aattgacactgaattatactttaaaactaatggatataaagaaccaatagaatcaatttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 aattgacactgaattatactttaaaactaatggatataaagaaccaatagaatcaatttt 272


Query: 364 acatcgtattgaagaatttaagaaattcctattatcaagaaacgagtccactattgctgt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 acatcgtattgaagaatttaagaaattcctattatcaagaaacgagtccactattgctgt 332


Query: 424 cgttggtcattcagatttcttttatcactttttcgatcgttccattcctcatatgaaaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cgttggtcattcagatttcttttatcactttttcgatcgttccattcctcatatgaaaaa 392


Query: 484 ttgtcaaattgtatcctggtgtagtg 509
           ||||||||||||||||||||||||||
Sbjct: 393 ttgtcaaattgtatcctggtgtagtg 418

 Score = 34.2 bits (17), Expect(3) = 0.0
 Identities = 17/17 (100%)
 Strand = Plus / Plus


Query: 604 ctatatttatttattta 620
           |||||||||||||||||
Sbjct: 513 ctatatttatttattta 529

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 821,175,921
Number of extensions: 60700229
Number of successful extensions: 8086422
Number of sequences better than 10.0: 181
Length of query: 620
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 596
Effective length of database: 102,084,959,077
Effective search space: 60842635609892
Effective search space used: 60842635609892
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U05008-1 (Contig-U05008-1Q) /CSM_Contig/Contig-U05008-1Q.Seq.d
         (620 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001510_1179(CP001510|pid:none) Methylobacterium extorquens AM1...    64   9e-10
CP001298_1569(CP001298|pid:none) Methylobacterium chloromethanic...    64   9e-10
CP001029_1367(CP001029|pid:none) Methylobacterium populi BJ001, ...    61   7e-09
CR954206_319(CR954206|pid:none) Ostreococcus tauri strain OTTH05...    54   1e-07
CP000592_180(CP000592|pid:none) Ostreococcus lucimarinus CCE9901...    53   6e-06
CP001323_871(CP001323|pid:none) Micromonas sp. RCC299 chromosome...    44   0.004
EU309474_3(EU309474|pid:none) Monascus aurantiacus citrinin bios...    35   0.031
CP000394_2335(CP000394|pid:none) Granulibacter bethesdensis CGDN...    38   0.20
CP001577_224(CP001577|pid:none) Micromonas sp. RCC299 chromosome...    37   0.35
AP007155_209(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...    37   0.45
AF221786_1(AF221786|pid:none) Plasmodium falciparum isolate 19 f...    37   0.59
AY054932_1(AY054932|pid:none) Plasmodium falciparum isolate PH4A...    36   0.77
FJ935894_1(FJ935894|pid:none) Plasmodium falciparum isolate MA3_...    36   1.0
CP000816_607(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co...    35   1.3
AL035477_55(AL035477|pid:none) Plasmodium falciparum MAL4P4.  &A...    35   1.3
AY054790_1(AY054790|pid:none) Plasmodium falciparum isolate AN11...    35   1.7
CR940353_395(CR940353|pid:none) Theileria annulata strain Ankara...    35   1.7
AY054831_1(AY054831|pid:none) Plasmodium falciparum isolate S2A1...    35   1.7
BT033288_1(BT033288|pid:none) Zea mays full-length cDNA clone ZM...    35   1.7
AM116711_1(AM116711|pid:none) Plasmodium falciparum partial var ...    35   2.2
EU333329_1(EU333329|pid:none) Plasmodium falciparum isolate C cl...    35   2.2
EU333330_1(EU333330|pid:none) Plasmodium falciparum isolate C cl...    35   2.2
AM116653_1(AM116653|pid:none) Plasmodium falciparum partial var ...    35   2.2
AM116654_1(AM116654|pid:none) Plasmodium falciparum partial var ...    35   2.2
CP000239_968(CP000239|pid:none) Synechococcus sp. JA-3-3Ab, comp...    34   2.9
FJ384760_1(FJ384760|pid:none) Sphenophorus levis serpin mRNA, co...    34   2.9
AY462797_1(AY462797|pid:none) Plasmodium falciparum erythrocyte ...    34   2.9
EU960667_1(EU960667|pid:none) Zea mays clone 227204 phosphoglyce...    34   2.9
EU047587_1(EU047587|pid:none) Plasmodium falciparum subclone E5d...    34   3.8
AE017332_418(AE017332|pid:none) Mycoplasma hyopneumoniae 232, co...    34   3.8
AF084583_1(AF084583|pid:none) Plasmodium falciparum erythrocyte ...    34   3.8
EU787535_1(EU787535|pid:none) Plasmodium falciparum isolate s56A...    33   5.0
AE014134_2895(AE014134|pid:none) Drosophila melanogaster chromos...    33   5.0
AM115864_1(AM115864|pid:none) Plasmodium falciparum partial var ...    33   5.0
AM116655_1(AM116655|pid:none) Plasmodium falciparum partial var ...    33   5.0
AP009389_2101(AP009389|pid:none) Pelotomaculum thermopropionicum...    33   5.0
DQ519152_1(DQ519152|pid:none) Plasmodium falciparum clone 30E1b0...    33   5.0
AF127288_1(AF127288|pid:none) Plasmodium falciparum clone SD105 ...    33   5.0
DQ490219_1(DQ490219|pid:none) Infectious bronchitis virus strain...    33   6.5
AE017243_416(AE017243|pid:none) Mycoplasma hyopneumoniae J, comp...    33   6.5
DQ490220_1(DQ490220|pid:none) Infectious bronchitis virus strain...    33   6.5
AM902716_4225(AM902716|pid:none) Bordetella petrii strain DSM 12...    33   6.5
AY050229_1(AY050229|pid:none) Drosophila melanogaster SD01615 fu...    33   6.5
CP000655_1212(CP000655|pid:none) Polynucleobacter necessarius su...    33   6.5
BT051996_1(BT051996|pid:none) Medicago truncatula clone MTYF9_FA...    33   8.5
EF086700_1(EF086700|pid:none) Picea sitchensis clone WS02734_M11...    33   8.5
AF084604_1(AF084604|pid:none) Plasmodium falciparum erythrocyte ...    33   8.5
AY054796_1(AY054796|pid:none) Plasmodium falciparum isolate AN17...    33   8.5
CR854996_3(CR854996|pid:none) Oryza sativa genomic DNA, chromoso...    33   8.5
AY054784_1(AY054784|pid:none) Plasmodium falciparum isolate AN5 ...    33   8.5
EU787698_1(EU787698|pid:none) Plasmodium falciparum isolate s40D...    33   8.5
AL606442_8(AL606442|pid:none) Oryza sativa genomic DNA, chromoso...    33   8.5
CP000316_3107(CP000316|pid:none) Polaromonas sp. JS666, complete...    33   8.5

>CP001510_1179(CP001510|pid:none) Methylobacterium extorquens AM1,
           complete genome.
          Length = 399

 Score = 63.9 bits (154), Expect(2) = 9e-10
 Identities = 45/138 (32%), Positives = 60/138 (43%)
 Frame = +2

Query: 77  INKSLCTTRRGFGKFLKENSNIKCLVSPLHSETVITSDDNGRPRSIIEKENPDFNFGDLQ 256
           + ++L TT    G F    +    LV  LH E   +S D GR  S++ +E P F  G L
Sbjct: 264 LTRALQTTA---GIFSDHPARPDVLVEVLHRECQESSCDIGRAASVLAQEFPAFQVGHLP 320

Query: 257 ERWWYLPSSIKDDLSIIDTELYFKTNGYKEPIESILHRIEEFKKFLLSRNESTIAVVGHS 436
           E WWY       D              + EP      R+  F+ +L +R E TI VVGH
Sbjct: 321 ETWWYADGEAGPD------------GWHVEPRTLFDQRVSGFRDWLRARPERTIGVVGHC 368

Query: 437 DFFYHFFDRSIPHMKNCQ 490
            FFYH   R    + NC+
Sbjct: 369 TFFYHLTGR---WLANCE 383

 Score = 21.9 bits (45), Expect(2) = 9e-10
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = +3

Query: 57  ELIISSPLTRA 89
           EL+++SPLTRA
Sbjct: 257 ELVVTSPLTRA 267

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 884,012,141
Number of extensions: 17353221
Number of successful extensions: 47151
Number of sequences better than 10.0: 53
Number of HSP's gapped: 47104
Number of HSP's successfully gapped: 58
Length of query: 206
Length of database: 1,061,185,681
Length adjustment: 123
Effective length of query: 83
Effective length of database: 659,166,577
Effective search space: 54710825891
Effective search space used: 54710825891
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.59  gvh: 0.45  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 16.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal

>> prediction for Contig-U05008-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0