Contig-U05002-1
Contig ID Contig-U05002-1
Contig update 2001. 8.29
Contig sequence
>Contig-U05002-1 (Contig-U05002-1Q) /CSM_Contig/Contig-U05002-1Q.Seq.d
ACAACAACAACAACAACAACAATAATAAAAAAGAAAAAGAAAAAGAAATT
CAAACAAAAGATCAAAAACAACTATTTATGGATAGATTGATTGATTATGA
TAATCATGTTGCATATTCAATAATTGTTGAAGATTATGGATTATATAAAC
CAACTGATGATGATTTCATCTATTCAATTAATCAAGGATCATTTAATATA
TCACTTTATTTAATATCATCAAACCAAATTATAATTAATAAATCAAATAT
TGATAAAATTTGGAAATCAATATTATTTCATATTGATACTGTATCAATTG
AAATAAATGAAAATAATAATAGTAATAAAATTNTAACTTGTTCNGTTAAN
CCNAAAATTGNTTTTTTAATTANTAAATTAAAATTNCANCCNCCAAGTTC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA

Gap no gap
Contig length 476
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3910573
End point 3910158
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U05002
List of clone(s)

est1=SSE454E,1,477
Translated Amino Acid sequence
NNNNNNNNKKEKEKEIQTKDQKQLFMDRLIDYDNHVAYSIIVEDYGLYKPTDDDFIYSIN
QGSFNISLYLISSNQIIINKSNIDKIWKSILFHIDTVSIEINENNNSNKIXTCSVXPKIX
FLIXKLKXXPPSSKKKKKKKKKKKKKKKKKKKKKKKKK


Translated Amino Acid sequence (All Frames)
Frame A:
tttttttiikkkkkkkfkqkiknnylwid*limiimlhiq*llkimdyinqlmmissiql
ikdhliyhfi*yhqtkl*linqilikfgnqyyfililyqlk*mkiiivikx*lvxlxxkl
xf*lxn*nxxxqvqkkkkkkkkkkkkkkkkkkkkkkkk


Frame B:
qqqqqqq**krkrkrnsnkrskttiyg*id*l**sccifnnc*rlwii*tn***fhlfn*
srii*yitlfniikpnyn**iky**nleiniisy*ycin*nk*k*****nxnlfx*xxnx
ffnx*ikixxxkfkkkkkkkkkkkkkkkkkkkkkkkkk


Frame C:
NNNNNNNNKKEKEKEIQTKDQKQLFMDRLIDYDNHVAYSIIVEDYGLYKPTDDDFIYSIN
QGSFNISLYLISSNQIIINKSNIDKIWKSILFHIDTVSIEINENNNSNKIXTCSVXPKIX
FLIXKLKXXPPSSKKKKKKKKKKKKKKKKKKKKKKKKK


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U05002-1 (Contig-U05002-1Q)
/CSM_Contig/Contig-U05002-1Q.Seq.d
(476 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U05002-1 (Contig-U05002-1Q) /CSM_Contig/Conti... 605 e-173
Contig-U14580-1 (Contig-U14580-1Q) /CSM_Contig/Conti... 44 1e-04
Contig-U14353-1 (Contig-U14353-1Q) /CSM_Contig/Conti... 44 1e-04
Contig-U12073-1 (Contig-U12073-1Q) /CSM_Contig/Conti... 44 1e-04
Contig-U10142-1 (Contig-U10142-1Q) /CSM_Contig/Conti... 42 5e-04
Contig-U09457-1 (Contig-U09457-1Q) /CSM_Contig/Conti... 42 5e-04
Contig-U08947-1 (Contig-U08947-1Q) /CSM_Contig/Conti... 42 5e-04
Contig-U05909-1 (Contig-U05909-1Q) /CSM_Contig/Conti... 42 5e-04
Contig-U12923-1 (Contig-U12923-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U12057-1 (Contig-U12057-1Q) /CSM_Contig/Conti... 40 0.002

>Contig-U05002-1 (Contig-U05002-1Q) /CSM_Contig/Contig-U05002-1Q.Seq.d
Length = 476

Score = 605 bits (305), Expect = e-173
Identities = 332/332 (100%)
Strand = Plus / Plus


Query: 69 caactatttatggatagattgattgattatgataatcatgttgcatattcaataattgtt 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 caactatttatggatagattgattgattatgataatcatgttgcatattcaataattgtt 128


Query: 129 gaagattatggattatataaaccaactgatgatgatttcatctattcaattaatcaagga 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gaagattatggattatataaaccaactgatgatgatttcatctattcaattaatcaagga 188


Query: 189 tcatttaatatatcactttatttaatatcatcaaaccaaattataattaataaatcaaat 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tcatttaatatatcactttatttaatatcatcaaaccaaattataattaataaatcaaat 248


Query: 249 attgataaaatttggaaatcaatattatttcatattgatactgtatcaattgaaataaat 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 attgataaaatttggaaatcaatattatttcatattgatactgtatcaattgaaataaat 308


Query: 309 gaaaataataatagtaataaaattntaacttgttcngttaanccnaaaattgntttttta 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gaaaataataatagtaataaaattntaacttgttcngttaanccnaaaattgntttttta 368


Query: 369 attantaaattaaaattncanccnccaagttc 400
||||||||||||||||||||||||||||||||
Sbjct: 369 attantaaattaaaattncanccnccaagttc 400


>Contig-U14580-1 (Contig-U14580-1Q) /CSM_Contig/Contig-U14580-1Q.Seq.d
Length = 249

Score = 44.1 bits (22), Expect = 1e-04
Identities = 28/30 (93%)
Strand = Plus / Plus


Query: 301 aaataaatgaaaataataatagtaataaaa 330
|||||||| |||||||||||| ||||||||
Sbjct: 175 aaataaataaaaataataataataataaaa 204


>Contig-U14353-1 (Contig-U14353-1Q) /CSM_Contig/Contig-U14353-1Q.Seq.d
Length = 118

Score = 44.1 bits (22), Expect = 1e-04
Identities = 28/30 (93%)
Strand = Plus / Plus


Query: 301 aaataaatgaaaataataatagtaataaaa 330
|||||||| |||||||||||| ||||||||
Sbjct: 35 aaataaataaaaataataataataataaaa 64


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,471
Number of Sequences: 6905
Number of extensions: 12471
Number of successful extensions: 2649
Number of sequences better than 10.0: 1222
length of query: 476
length of database: 5,674,871
effective HSP length: 16
effective length of query: 460
effective length of database: 5,564,391
effective search space: 2559619860
effective search space used: 2559619860
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7. 7
Homology vs DNA
Query= Contig-U05002-1 (Contig-U05002-1Q) /CSM_Contig/Contig-U05002-1Q.Seq.d
(476 letters)

Database: ddbj_B
105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU072419) Dictyostelium discoideum slug cDNA, clone SSE454. 341 2e-89 1
(AU037919) Dictyostelium discoideum slug cDNA, clone SSE454. 103 6e-18 1
(CE778045) tigr-gss-dog-17000317006345 Dog Library Canis lup... 56 0.001 1
(AE014188) Plasmodium falciparum 3D7 chromosome 12, complete... 42 0.002 10
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 40 0.004 9
(AC006280) Plasmodium falciparum chromosome 12 clone PFYAC72... 42 0.005 6
(EK317021) 1095462417087 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.011 3
(AC213104) Pongo abelii chromosome UNKNOWN clone CH276-234M1... 36 0.013 2
(AC223393) Pongo abelii chromosome UNKNOWN clone CH276-60A8,... 36 0.013 2
(AC108931) Homo sapiens BAC clone RP11-284E20 from 4, comple... 42 0.014 2
(AM455744) Vitis vinifera contig VV78X248223.8, whole genome... 42 0.015 2
(AM456564) Vitis vinifera, whole genome shotgun sequence, co... 42 0.015 2
(AZ683291) ENTHX89TR Entamoeba histolytica Sheared DNA Entam... 38 0.017 2
(BH157335) ENTRG31TR Entamoeba histolytica Sheared DNA Entam... 38 0.017 2
(B73024) RPCI11-10O21.TP RPCI-11 Homo sapiens genomic clone ... 42 0.017 2
(AQ316358) RPCI11-107L18.TJ RPCI-11 Homo sapiens genomic clo... 42 0.017 2
(C92047) Dictyostelium discoideum slug cDNA, clone SSC115. 36 0.017 2
(C90474) Dictyostelium discoideum slug cDNA, clone SSI579. 36 0.017 2
(AU034982) Dictyostelium discoideum slug cDNA, clone SLE444. 36 0.017 2
(AU051918) Dictyostelium discoideum slug cDNA, clone SSC392. 36 0.017 2
(AU074691) Dictyostelium discoideum slug cDNA, clone SSL561. 36 0.017 2
(AU074134) Dictyostelium discoideum slug cDNA, clone SSJ594. 36 0.017 2
(AU071505) Dictyostelium discoideum slug cDNA, clone SSB677. 36 0.017 2
(AC181225) Strongylocentrotus purpuratus clone R3-4010B19, W... 40 0.020 4
(CR847836) Zebrafish DNA sequence from clone DKEY-285J18 in ... 40 0.040 2
(AC181350) Strongylocentrotus purpuratus clone R3-43F4, WORK... 42 0.045 3
(EK324265) 1095467000890 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.046 2
(AC091604) Mus musculus strain C57BL6/J clone RP23-48J20, WO... 38 0.049 2
(AC113069) Mus musculus chromosome 15, clone RP23-269F24, co... 38 0.049 2
(AM432050) Vitis vinifera contig VV78X276371.3, whole genome... 40 0.055 2
(AM477597) Vitis vinifera contig VV78X017619.5, whole genome... 40 0.056 2
(AM436878) Vitis vinifera contig VV78X001476.5, whole genome... 40 0.056 2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 48 0.056 8
(AM456539) Vitis vinifera contig VV78X175031.6, whole genome... 40 0.058 2
(AK129420) Mus musculus mRNA for mKIAA1669 protein. 38 0.058 2
(BX296527) Zebrafish DNA sequence from clone DKEYP-32C3 in l... 38 0.059 5
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 38 0.061 10
(FG088374) CMRC-FF-IH0-ack-b-17-0-CMRC.r1 Ceratitis capitata... 36 0.064 2
(CT027558) Zebrafish DNA sequence from clone DKEY-117N22 in ... 50 0.079 1
(CR931741) Medicago truncatula chromosome 5 clone mte1-54m21... 50 0.079 1
(AC206130) Saccoglossus kowalevskii BAC CUGI_SK_BA 001B21 (... 50 0.079 1
(AC202822) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 50 0.079 1
(CU179663) Zebrafish DNA sequence from clone DKEY-197I9. 34 0.096 6
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI... 42 0.11 7
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 44 0.12 7
(CR751237) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 0.13 6
(AL442129) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 0.14 3
(AM637805) Entamoeba dispar GSS, clone dispar48b02.p1k. 38 0.14 2
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117... 38 0.18 5
(BX950214) Zebrafish DNA sequence from clone CH211-214C2 in ... 36 0.18 2
(AP006852) Candida albicans genomic DNA, chromosome 7, compl... 34 0.19 13
(AM285325) Spiroplasma citri GII3-3X chromosome, contig Cont... 40 0.20 3
(AM423647) Vitis vinifera, whole genome shotgun sequence, co... 38 0.20 2
(EF175763) Romanomermis nielseni mitochondrion, complete gen... 36 0.21 2
(AC005506) Plasmodium falciparum chromosome 12 clone PFYAC35... 38 0.23 9
(AM487768) Vitis vinifera contig VV78X020593.4, whole genome... 48 0.23 2
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 38 0.24 7
(FP326677) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.25 3
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 36 0.27 11
(CU571161) Zebrafish DNA sequence from clone CH73-195J15 in ... 48 0.31 1
(CR405705) Zebrafish DNA sequence from clone DKEY-64E13 in l... 48 0.31 1
(BX571854) Zebrafish DNA sequence from clone CH211-195O19 in... 48 0.31 1
(BX085193) Zebrafish DNA sequence from clone DKEY-20F20 in l... 48 0.31 1
(AL953872) Zebrafish DNA sequence from clone CH211-235H23. 48 0.31 1
(AL672072) Zebrafish DNA sequence from clone BUSM1-55H21 in ... 48 0.31 1
(AC113317) Mus musculus chromosome 5, clone RP23-442G8, comp... 48 0.31 1
(FB871229) Sequence 90502 from Patent WO2008034648. 48 0.31 1
(FB871193) Sequence 90466 from Patent WO2008034648. 48 0.31 1
(FB846375) Sequence 65648 from Patent WO2008034648. 48 0.31 1
(FB846339) Sequence 65612 from Patent WO2008034648. 48 0.31 1
(FB810128) Sequence 29401 from Patent WO2008034648. 48 0.31 1
(FB810092) Sequence 29365 from Patent WO2008034648. 48 0.31 1
(FB788606) Sequence 7879 from Patent WO2008034648. 48 0.31 1
(FB788570) Sequence 7843 from Patent WO2008034648. 48 0.31 1
(DJ441091) Breast Cancer Biomarkers. 48 0.31 1
(DJ441090) Breast Cancer Biomarkers. 48 0.31 1
(CS200142) Sequence 23 from Patent WO2005106044. 48 0.31 1
(CS200141) Sequence 22 from Patent WO2005106044. 48 0.31 1
(AL023835) Caenorhabditis elegans YAC Y37A1B. 48 0.31 1
(AP003691) Homo sapiens genomic DNA, chromosome 8q23, clone:... 48 0.31 1
(AC016877) Homo sapiens chromosome 8, clone RP11-44N12, comp... 48 0.31 1
(AC134281) Rattus norvegicus clone CH230-44J11, WORKING DRAF... 48 0.31 1
(AC132658) Rattus norvegicus clone CH230-116J10, *** SEQUENC... 48 0.31 1
(AC098606) Rattus norvegicus clone CH230-146J12, WORKING DRA... 48 0.31 1
(Z83124) Caenorhabditis elegans DNA *** SEQUENCING IN PROGRE... 48 0.31 1
(AC201545) Strongylocentrotus purpuratus clone R3-3103O05, W... 48 0.31 1
(AC191904) Sorex araneus clone SA_Ba-310G22, WORKING DRAFT S... 48 0.31 1
(AC169650) Bos taurus clone CH240-198F3, WORKING DRAFT SEQUE... 48 0.31 1
(AC164487) Danio rerio strain Tue clone CH211-90M23, WORKING... 48 0.31 1
(AC164449) Bos taurus clone CH240-153O10, *** SEQUENCING IN ... 48 0.31 1
(ER798280) POTLB42TF Solanum tuberosum RHPOTKEY BAC ends Sol... 48 0.31 1
(DU904231) 412673 Tomato HindIII BAC Library Solanum lycoper... 48 0.31 1
(CE501071) tigr-gss-dog-17000327332163 Dog Library Canis lup... 48 0.31 1
(BH951278) odi90h04.g1 B.oleracea002 Brassica oleracea genom... 48 0.31 1
(CX576526) TTE00030313 Amplicon Express - Conjugative Form T... 48 0.31 1
(BQ514313) EST621728 Generation of a set of potato cDNA clon... 48 0.31 1
(BI969658) GM830008B20C08 Gm-r1083 Glycine max cDNA clone Gm... 48 0.31 1
(FF576982) TTEEI87THB Tetrahymena thermophila conjugation cD... 48 0.31 1
(FE764613) CCAG2165.g1 CCAG Petrolisthes cinctipes heart, gi... 48 0.31 1
(FE764612) CCAG2165.b7 CCAG Petrolisthes cinctipes heart, gi... 48 0.31 1
(CP001011) Xylella fastidiosa M23, complete genome. 48 0.31 1
(AE009442) Xylella fastidiosa Temecula1, complete genome. 48 0.31 1
(AC127024) Homo sapiens chromosome 17, clone CTD-2349P21, co... 44 0.32 4
(AC204213) Zea mays chromosome 1 clone CH201-120A17; ZMMBBc0... 40 0.34 3
(AC173632) Strongylocentrotus purpuratus clone R3-3104P17, W... 38 0.39 3
(GE672683) CBTZ2277.g1 B.anynana_embryo_2-10kb Bicyclus anyn... 36 0.41 2
(BW038800) Ciona intestinalis cDNA, clone:cibd038m06, 5' end... 38 0.45 2
(GE672682) CBTZ2007.g1 B.anynana_embryo_2-10kb Bicyclus anyn... 36 0.46 2
(AC180289) Strongylocentrotus purpuratus clone R3-3122L12, W... 38 0.47 4
(EK421305) 1095515508033 Global-Ocean-Sampling_GS-31-01-01-1... 38 0.50 2
(AE014185) Plasmodium falciparum 3D7 chromosome 10, complete... 38 0.52 9
(AF352790) Chrysomya putoria mitochondrion, complete genome. 40 0.57 3
(AE014187) Plasmodium falciparum 3D7 chromosome 14, complete... 44 0.57 10
(AC068111) Homo sapiens chromosome 2 clone RP11-705N19 map 2... 40 0.58 6
(AB075955) Ixodes holocyclus mitochondrial DNA, complete seq... 32 0.60 5
(AC130324) Homo sapiens chromosome 17, clone RP13-753N3, com... 44 0.60 4
(CP000743) Methanococcus aeolicus Nankai-3, complete genome. 34 0.64 13
(FD463999) LARW293TF Haematobia irritans 1st Instar Larvae H... 36 0.66 2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 44 0.66 2
(AC126007) Medicago truncatula clone mth2-11o4, complete seq... 34 0.69 2
(AJ864683) Orpinomyces sp. OUS1 GSS, clone E2-41. 42 0.70 2
(AC016037) Homo sapiens clone RP11-25B1, WORKING DRAFT SEQUE... 40 0.73 3
(AE014186) Plasmodium falciparum 3D7 chromosome 11, complete... 44 0.75 7
(AM452008) Vitis vinifera contig VV78X224145.8, whole genome... 34 0.79 2
(AF361474) Dictyostelium discoideum receptor histidine kinas... 36 0.81 2
(BJ377761) Dictyostelium discoideum cDNA clone:ddc25d22, 3' ... 34 0.81 3
(AF029726) Dictyostelium discoideum histidine kinase C (dhkC... 36 0.82 2
(CP000847) Rickettsia akari str. Hartford, complete genome. 36 0.82 11
(CU861454) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 38 0.86 3
(BX005396) Zebrafish DNA sequence from clone CH211-128N12. 38 0.86 3
(AC171130) Helobdella robusta clone CH306-1A12, complete seq... 42 0.87 3
(FH939578) CHO_OF6686xl07r1.ab1 CHO_OF6 Nicotiana tabacum ge... 34 0.87 2
(ET811433) CHO_OF732xa13f1.ab1 CHO_OF Nicotiana tabacum geno... 34 0.88 2
(AP001202) Homo sapiens genomic DNA, chromosome 18q11.2, clo... 44 0.90 3
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 40 0.91 6
(BJ342891) Dictyostelium discoideum cDNA clone:dda15e11, 3' ... 34 0.92 3
(AC233468) Solanum tuberosum chromosome 5 clone RH096B09, **... 40 0.96 2
(AC010754) Homo sapiens chromosome 18, clone RP11-403A21, co... 44 0.96 3
(CU856147) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 36 0.96 4
(AL358975) Human DNA sequence from clone RP11-375O18 on chro... 44 1.0 3
(AC214212) Populus trichocarpa clone POP019-D08, complete se... 34 1.0 5
(AC157646) Medicago truncatula clone mth2-164p8, complete se... 38 1.0 4
(AL954317) Zebrafish DNA sequence from clone DKEY-251I8 in l... 42 1.1 3
(BJ375396) Dictyostelium discoideum cDNA clone:ddc18f16, 3' ... 34 1.1 3
(BJ403012) Dictyostelium discoideum cDNA clone:dds18d04, 3' ... 34 1.1 3
(AC008250) Homo sapiens 12 BAC RP11-729I10 (Roswell Park Can... 40 1.1 2
(DQ984826) Bos taurus BTA14 scaffold25283_5546 genomic seque... 40 1.2 2
(FP015852) Zebrafish DNA sequence from clone CH73-181E23 in ... 46 1.2 1
(CU855758) Zebrafish DNA sequence from clone CH211-247I17 in... 46 1.2 1
(CU137641) Zebrafish DNA sequence from clone CH211-190A12 in... 46 1.2 1
(CT583671) Zebrafish DNA sequence from clone DKEY-122A15 in ... 46 1.2 1
(CT027717) Zebrafish DNA sequence from clone CH211-125I17 in... 46 1.2 1
(BX571970) Zebrafish DNA sequence from clone DKEY-276G11 in ... 46 1.2 1
(BX548021) Zebrafish DNA sequence from clone DKEY-164F24 in ... 46 1.2 1
(BX537103) Zebrafish DNA sequence from clone CH211-194E1 in ... 46 1.2 1
(BX323864) Zebrafish DNA sequence from clone CH211-218K4 in ... 46 1.2 1
(BX248239) Zebrafish DNA sequence from clone CH211-213I9 in ... 46 1.2 1
(BX005070) Zebrafish DNA sequence from clone DKEY-13B19 in l... 46 1.2 1
(AC140919) Mus musculus BAC clone RP24-510L10 from 1, comple... 46 1.2 1
(AC116556) Mus musculus strain C57BL/6J chromosome 8 clone r... 46 1.2 1
(BX000491) Oryza sativa chromosome 12, . BAC OSJNBb0068K19 o... 46 1.2 1
(AP008218) Oryza sativa (japonica cultivar-group) genomic DN... 46 1.2 1
(AM465483) Vitis vinifera, whole genome shotgun sequence, co... 46 1.2 1
(AM428872) Vitis vinifera contig VV78X064782.4, whole genome... 46 1.2 1
(AC196190) Solanum lycopersicum cv.Heinz 1706, chromosome 5 ... 46 1.2 1
(EA691331) Sequence 70210 from patent US 7365185. 46 1.2 1
(AC151759) Ornithorhynchus anatinus chromosome UNK clone OAB... 46 1.2 1
(AY160105) Dictyostelium discoideum nucleotide exchange fact... 46 1.2 1
(AL844509) Plasmodium falciparum 3D7 chromosome 13. 46 1.2 1
(AL844507) Plasmodium falciparum 3D7 chromosome 8. 46 1.2 1
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 46 1.2 1
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 46 1.2 1
(AL646103) Human DNA sequence from clone RP11-165L6 on chrom... 46 1.2 1
(AL133373) Human chromosome 14 DNA sequence BAC R-248B24 of ... 46 1.2 1
(AL121839) Human chromosome 14 DNA sequence BAC R-747H7 of l... 46 1.2 1
(AC104940) Homo sapiens chromosome 8, clone RP11-378J9, comp... 46 1.2 1
(AC025946) Homo sapiens chromosome 10 clone RP11-543F8, comp... 46 1.2 1
(AC015522) Homo sapiens chromosome 8, clone RP11-327O12, com... 46 1.2 1
(AC125338) Rattus norvegicus clone CH230-6I20, WORKING DRAFT... 46 1.2 1
(AC098921) Rattus norvegicus clone CH230-202A1, WORKING DRAF... 46 1.2 1
(AC095216) Rattus norvegicus clone CH230-9L11, *** SEQUENCIN... 46 1.2 1
(CU861936) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.2 1
(CU672267) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.2 1
(AC094542) Rattus norvegicus clone CH230-4I16, WORKING DRAFT... 46 1.2 1
(AC040892) Homo sapiens chromosome 14 clone RP11-607J17 map ... 46 1.2 1
(CU463079) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.2 1
(CU234196) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.2 1
(CR759781) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.2 1
(CR381542) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.2 1
(AL391377) Human DNA sequence *** SEQUENCING CANCELLED *** f... 46 1.2 1
(AC187931) Aotus nancymaae clone CH258-22J5, WORKING DRAFT S... 46 1.2 1
(AC182648) Solanum lycopersicum chromosome 5 clone C05HBa023... 46 1.2 1
(AC180647) Strongylocentrotus purpuratus clone R3-3090D22, W... 46 1.2 1
(AC179582) Strongylocentrotus purpuratus clone R3-1029M24, W... 46 1.2 1
(AQ779796) HS_5572_B2_E03_SP6 RPCI-11 Human Male BAC Library... 46 1.2 1
(FI271483) CccaBb048-K17JF CccABb Cajanus cajan genomic clon... 46 1.2 1
(FI202347) CccaBa003-G11TV CccABa Cajanus cajan genomic clon... 46 1.2 1
(FI200787) CccaBa030-K10TR CccABa Cajanus cajan genomic clon... 46 1.2 1
(ER936979) AF__Bb0006H15f AF__Bb Aquilegia formosa genomic, ... 46 1.2 1
(EJ886792) 1093018421620 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.2 1
(EJ885174) 1093018413940 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.2 1
(AL744226) Danio rerio genomic clone DKEY-11N20, genomic sur... 46 1.2 1
(EJ180594) 1092344120570 Global-Ocean-Sampling_GS-27-01-01-1... 46 1.2 1
(EJ068188) 1095458060253 Global-Ocean-Sampling_GS-26-01-01-1... 46 1.2 1
(EJ066000) 1095458040186 Global-Ocean-Sampling_GS-26-01-01-1... 46 1.2 1
(EI943468) akm3af81f Km3-3010m-Ionian Sea marine metagenome ... 46 1.2 1
(DX993861) CHORI103-16A19.TV CHORI103 Schistosoma mansoni ge... 46 1.2 1
(DE282632) Oryzias latipes DNA, clone: ola1-241G18.R, genomi... 46 1.2 1
(DE187431) Bombyx mori genomic DNA, Fosmid clone:RO0344-F09_R. 46 1.2 1
(CW931599) EDCC878TR A. castellanii, 6-8 kb library from tot... 46 1.2 1
(CU759889) A BAC library has been constructed from PN40024 g... 46 1.2 1
(CE220054) tigr-gss-dog-17000326879945 Dog Library Canis lup... 46 1.2 1
(EL926920) NY4Tr1_3_F04.g1_A039 NY4 trophonts (NY4Tr1) Ichth... 46 1.2 1
(EL905637) INIT2_4_F11.b1_A006 G5 trophont cDNA (INIT2) Icht... 46 1.2 1
(EL492736) A01_PFBAMHI-M-T3-PLATE1A.AB1 Blood stage Plasmodi... 46 1.2 1
(EC823511) SME00003134 esmbsro2 Sawyeria marylandensis cDNA,... 46 1.2 1
(DY895453) CeleSEQ15290 Cunninghamella elegans pBluescript (... 46 1.2 1
(AU074766) Dictyostelium discoideum slug cDNA, clone SSL806. 46 1.2 1
(CU527468) Theobroma cacao, mRNA sequence (KZ0ACAA2YH04FM1). 46 1.2 1
(BI967176) GM830001A10C10 Gm-r1083 Glycine max cDNA clone Gm... 46 1.2 1
(BF912123) IL2-UT0073-131100-243-E03 UT0073 Homo sapiens cDN... 46 1.2 1
(BE929706) IL5-GN0033-220800-131-g07 GN0033 Homo sapiens cDN... 46 1.2 1
(GH354318) G895P549FO16.T0 C. immitis RS, 48HR MYCELIUM_NORM... 46 1.2 1
(GH339392) G895P516FG9.T0 C. immitis RS, 48HR MYCELIUM_NORMA... 46 1.2 1
(GE686551) CBUA3655.b1 B.anynana_head_nosize Bicyclus anynan... 46 1.2 1
(GE400271) 293786366 Nasonia vitripennis Female Pupae Nasoni... 46 1.2 1
(GD786548) 454GmaGlobSeed529197 Soybean Seeds Containing Glo... 46 1.2 1
(EY337304) CAWY8239.rev CAWY Helobdella robusta Subtracted E... 46 1.2 1
(EY312585) CAWX24096.rev CAWX Helobdella robusta Primary Ear... 46 1.2 1
(EY300468) CAWX15038.rev CAWX Helobdella robusta Primary Ear... 46 1.2 1
(AE017263) Mesoplasma florum L1 complete genome. 46 1.2 1
(CU915256) Zebrafish DNA sequence from clone CH73-121A22 in ... 36 1.3 6
(AC177007) Strongylocentrotus purpuratus clone R3-37E11, WOR... 44 1.3 2
(AC067913) Homo sapiens chromosome 12 clone RP11-569E15 map ... 40 1.3 2
(CT025582) Zebrafish DNA sequence from clone DKEY-220G3 in l... 38 1.3 5
(BX284664) Zebrafish DNA sequence from clone DKEY-7I23 in li... 40 1.3 3
(AC130827) Mus musculus BAC clone RP23-405I7 from chromosome... 40 1.3 4
(AC023266) Homo sapiens chromosome 17 clone RP11-778K9 map 1... 44 1.4 2
(BX004974) Zebrafish DNA sequence from clone CH211-74A16 in ... 44 1.4 2
(EC822063) SME00009494 esmbsro2 Sawyeria marylandensis cDNA,... 40 1.4 2
(AL928885) Zebrafish DNA sequence from clone CH211-195G24 in... 38 1.5 2
(BX005044) Zebrafish DNA sequence from clone DKEY-7L6 in lin... 34 1.5 5
(FN357678) Schistosoma mansoni genome sequence supercontig S... 34 1.6 7
(AC024904) Homo sapiens chromosome 12 clone RP11-729B5, WORK... 40 1.6 2
(AC096821) Rattus norvegicus clone CH230-134H5, *** SEQUENCI... 38 1.6 6
(CC962094) BOIDR30TR BO_1.4_1.6_KB_nuc Brassica oleracea gen... 42 1.7 2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 44 1.7 6
(BW009946) Ciona intestinalis cDNA, clone:rcibd038m06, 3' en... 38 1.7 2
(EK378277) 1095469449180 Global-Ocean-Sampling_GS-31-01-01-1... 32 1.8 3
(AC172725) Callicebus moloch clone LB5-364C23, WORKING DRAFT... 38 1.8 5
(FM992695) Candida dubliniensis CD36 chromosome R, complete ... 34 1.8 13
(DC225638) Plasmodium berghei strain ANKA cDNA clone:SG00326... 40 1.8 2
(AM464946) Vitis vinifera contig VV78X209600.3, whole genome... 30 1.8 4
(CR936442) Zebrafish DNA sequence from clone DKEY-266F7 in l... 40 1.9 4
(AM428517) Vitis vinifera contig VV78X274645.6, whole genome... 42 1.9 2
(EI448487) PV_GBa0047B11.f PV_GBa Phaseolus vulgaris genomic... 36 1.9 2
(AC201409) Strongylocentrotus purpuratus clone R3-17N17, WOR... 34 1.9 3
(FP085406) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 2.0 2
(FN357915) Schistosoma mansoni genome sequence supercontig S... 38 2.0 8
(EJ733960) 1092961054296 Global-Ocean-Sampling_GS-30-02-01-1... 36 2.0 2
(EJ617186) 1092963029567 Global-Ocean-Sampling_GS-29-01-01-1... 40 2.0 2
(FH897382) CHO_ONF051xe17f1.ab1 CHO_ONF Nicotiana tabacum ge... 40 2.0 2
(AY630340) Philaenus spumarius mitochondrion, complete genome. 38 2.1 3
(AC146651) Medicago truncatula clone mth2-113d3, complete se... 42 2.1 4
(AB100057) Ochlodes ochracea mitochondrial ND5 gene for NADH... 38 2.1 2
(FI049952) CHO_OF6511xe07r1.ab1 CHO_OF6 Nicotiana tabacum ge... 40 2.1 2
(AZ671973) ENTMP39TF Entamoeba histolytica Sheared DNA Entam... 38 2.1 2
(AC079960) Homo sapiens chromosome 4 clone RP11-422D16 map 4... 38 2.2 4
(EJ676281) 1092955083084 Global-Ocean-Sampling_GS-30-02-01-1... 36 2.4 2
(AL359435) Human DNA sequence from clone RP11-530J24 on chro... 36 2.4 3
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 44 2.4 8
(FP340282) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 2.4 2
(CU928608) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 2.4 2
(AL772250) Zebrafish DNA sequence from clone CH211-160M22 in... 34 2.5 2
(AF418011) Arabidopsis thaliana matrix attachment region AMAR3. 40 2.5 2
(FN360784) Schistosoma mansoni genome sequence supercontig S... 40 2.5 2
(AC177060) Strongylocentrotus purpuratus clone R3-4004E16, W... 40 2.6 4
(AM478272) Vitis vinifera, whole genome shotgun sequence, co... 34 2.7 2
(AC006279) Plasmodium falciparum chromosome 12 clone PFYAC61... 32 2.7 7
(AC117453) Homo sapiens 3 BAC RP11-321N5 (Roswell Park Cance... 38 2.8 2
(AC114258) Dictyostelium discoideum chromosome 2 map complem... 38 2.8 3
(AC122377) Mus musculus BAC clone RP23-473B13 from chromosom... 40 2.8 3
(AC198582) Spermophilus tridecemlineatus clone VMRC20-645D19... 34 2.9 6
(AC138135) Homo sapiens chromosome 1 clone RP11-128G13, comp... 32 2.9 4
(AL365230) Human DNA sequence from clone RP11-384G23 on chro... 40 3.0 2
(CU855695) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 3.0 3
(AC180426) Strongylocentrotus purpuratus clone R3-3103F7, WO... 42 3.0 3
(AM468949) Vitis vinifera contig VV78X069771.3, whole genome... 32 3.0 2
(AM478730) Vitis vinifera contig VV78X239778.6, whole genome... 36 3.0 2
(AP007801) Lotus japonicus genomic DNA, chromosome 4, clone:... 40 3.1 2
(AM285307) Spiroplasma citri GII3-3X chromosome, contig Cont... 38 3.2 5
(DX519802) GH_MBb0079L23f GH_MBb Gossypium hirsutum genomic ... 32 3.2 2
(CZ509631) GMW2-66I16a.g1 GMW2 Glycine max genomic, genomic ... 32 3.2 2
(DX396322) GE__Sa0031G09.b1 Gossypium exiguum WGS library Go... 32 3.2 2
(AL953846) Zebrafish DNA sequence from clone CH211-244D10. 34 3.3 5
(ED716641) GM_WBb0066I16.r GM_WBb Glycine max genomic clone ... 32 3.3 2
(FH241082) CHO_OF3107xb20f1.ab1 CHO_OF3 Nicotiana tabacum ge... 34 3.3 2
(GR028510) CCIC13453.g1 CCIC Mimulus guttatus IM62 roots (H)... 34 3.3 2
(GR028509) CCIC13453.b1 CCIC Mimulus guttatus IM62 roots (H)... 34 3.3 2
(AP005840) Oryza sativa Japonica Group genomic DNA, chromoso... 34 3.4 6
(AA661307) MB3D6V5D05T3 Brugia malayi day 6 post-infection t... 30 3.4 3
(CU929727) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 3.4 3
(AC166059) Mus musculus chromosome 8 clone RP23-313J21, *** ... 38 3.5 5
(BM165770) EST568293 PyBS Plasmodium yoelii yoelii cDNA clon... 32 3.5 2
(AC146600) Mus musculus BAC clone RP23-386G7 from chromosome... 40 3.5 3
(FP236344) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 3.5 4
(CU862017) Zebrafish DNA sequence from clone CH73-304G8 in l... 36 3.6 3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 34 3.6 7
(AC168358) Strongylocentrotus purpuratus clone R3-4013P22, W... 36 3.7 4
(BX470240) Zebrafish DNA sequence from clone CH211-92L17 in ... 40 3.9 3
(DQ927304) Tetrahymena paravorax strain RP mitochondrion, co... 40 3.9 4
(AL049649) Human DNA sequence from clone RP4-734C18 on chrom... 42 3.9 2
(AY648941) Vasdavidius concursus cytochrome oxidase subunit ... 32 4.1 3
(AL163283) Homo sapiens chromosome 21 segment HS21C083. 38 4.1 4
(CU138505) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 4.2 5
(AC226511) Solanum lycopersicum chromosome 2 clone C02HBa017... 44 4.2 2
(CR356231) Zebrafish DNA sequence from clone CH211-232N7 in ... 34 4.2 5
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ... 40 4.3 13
(AC124980) Mus musculus chromosome 13, clone RP24-133J11, co... 36 4.3 6
(FP243386) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 4.3 3
(CT998565) Zebrafish DNA sequence from clone DKEY-197A6 in l... 38 4.4 5
(AC177279) Strongylocentrotus purpuratus clone R3-1033M10, W... 36 4.4 3
(AC154268) Mus musculus BAC clone RP24-235B13 from chromosom... 42 4.4 2
(AC181926) Strongylocentrotus purpuratus clone R3-1009K20, W... 34 4.6 3
(AM285320) Spiroplasma citri GII3-3X chromosome, contig Cont... 38 4.7 5
(AP000851) Homo sapiens genomic DNA, chromosome 11q, clone:R... 34 4.7 5
(AC106063) Rattus norvegicus clone CH230-193I15, *** SEQUENC... 34 4.7 3
(AP009668) Lotus japonicus genomic DNA, chromosome 6, clone:... 38 4.7 3
(AC138289) Mus musculus chromosome 1, clone RP24-329K3, comp... 44 4.7 2
(AC176461) Strongylocentrotus purpuratus clone R3-3070B13, W... 36 4.7 3
(AC153604) Mus musculus clone RP23-36K8, WORKING DRAFT SEQUE... 34 4.8 4
(AC234184) Zea mays chromosome 2 clone CH201-466L17; ZMMBBc0... 40 4.9 2
(AC231725) Monodelphis domestica clone VMRC18-213G21, WORKIN... 44 4.9 2
(FP015956) Zebrafish DNA sequence from clone CH73-145C23 in ... 44 4.9 1
(CU695204) Zebrafish DNA sequence from clone CH73-390B10 in ... 44 4.9 1
(CU463233) Zebrafish DNA sequence from clone CH73-364M4. 44 4.9 1
(CR318653) Zebrafish DNA sequence from clone DKEY-19B23 in l... 44 4.9 1
(BX571827) Zebrafish DNA sequence from clone CH211-195M20 in... 44 4.9 1
(BX323451) Zebrafish DNA sequence from clone DKEY-49H9 in li... 44 4.9 1
(BX322793) Zebrafish DNA sequence from clone CH211-208I8 in ... 44 4.9 1
(BX005014) Zebrafish DNA sequence from clone CH211-103E2 in ... 44 4.9 1
(BX004990) Zebrafish DNA sequence from clone DKEY-12H12. 44 4.9 1
(AC200905) Gallus gallus BAC clone CH261-127L4 from chromoso... 44 4.9 1
(AC192945) Gallus gallus BAC clone CH261-173G2 from chromoso... 44 4.9 1
(AC188445) Gallus gallus BAC clone CH261-84O21 from chromoso... 44 4.9 1
(EZ026172) TSA: Acropora millepora SeqIndex45064, mRNA seque... 44 4.9 1
(BV883564) pRRL2:Newb:20080411:262756 USMARC Pig Breed SNP D... 44 4.9 1
(BV647393) S215P6393RG6.T0 Clara Pan troglodytes troglodytes... 44 4.9 1
(AL954817) Mouse DNA sequence from clone RP24-84L18 on chrom... 44 4.9 1
(AJ012488) Mus musculus gene encoding serotonin receptor 5-H... 44 4.9 1
(AC162455) Mus musculus chromosome 3, clone RP24-141D15, com... 44 4.9 1
(AC157768) Mus musculus chromosome 1, clone RP24-308M3, comp... 44 4.9 1
(AC154289) Mus musculus BAC clone RP23-449E11 from chromosom... 44 4.9 1
(AC131115) Mus musculus BAC clone RP24-235C16 from chromosom... 44 4.9 1
(AC105065) Mus musculus chromosome 18, clone RP24-459E1, com... 44 4.9 1
(AC214662) MACACA MULATTA BAC clone CH250-115L2 from chromos... 44 4.9 1
(AC207716) Pongo abelii BAC clone CH276-16F9 from chromosome... 44 4.9 1
(AC197623) Rhesus Macaque BAC CH250-509F3 () complete seque... 44 4.9 1
(AC190067) Rhesus Macaque BAC CH250-162K4 () complete seque... 44 4.9 1
(AM476793) Vitis vinifera contig VV78X030941.12, whole genom... 44 4.9 1
(AM457048) Vitis vinifera contig VV79X002683.1, whole genome... 44 4.9 1
(AM453762) Vitis vinifera, whole genome shotgun sequence, co... 44 4.9 1
(AM441896) Vitis vinifera contig VV78X123860.32, whole genom... 44 4.9 1
(AM435407) Vitis vinifera contig VV78X181940.3, whole genome... 44 4.9 1
(AM426786) Vitis vinifera contig VV78X194239.7, whole genome... 44 4.9 1
(AM426783) Vitis vinifera contig VV78X124547.3, whole genome... 44 4.9 1
(AC235326) Glycine max strain Williams 82 clone GM_WBb0080M0... 44 4.9 1
(AC216770) Populus trichocarpa clone POP051-A24, complete se... 44 4.9 1
(AC184099) Populus trichocarpa clone Pop1-93O20, complete se... 44 4.9 1
(FB596798) Sequence 12521 from Patent WO2004081186. 44 4.9 1
(FB596575) Sequence 12298 from Patent WO2004081186. 44 4.9 1
(DL005677) NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES. 44 4.9 1
(CS459602) Sequence 83 from Patent WO2006117596. 44 4.9 1
(GC700845) Sequence 16090 from patent US 6812339. 44 4.9 1
(CR956383) Pig DNA sequence from clone CH242-271L5 on chromo... 44 4.9 1
(BX296548) Pig DNA sequence from clone PigE-193I9. 44 4.9 1
(AC186060) Canis Familiaris chromosome 10, clone XX-162K3, c... 44 4.9 1
(EU201158) Mastigoteuthis agassizi isolate M9 16S ribosomal ... 44 4.9 1
(EU201157) Mastigoteuthis agassizi isolate M8 16S ribosomal ... 44 4.9 1
(EU201154) Mastigoteuthis sp. M1 ARL-2008 16S ribosomal RNA ... 44 4.9 1
(EU201151) Mastigoteuthis agassizi isolate DE0409 16S riboso... 44 4.9 1
(BX538352) Cryptosporidium parvum chromosome 6, complete seq... 44 4.9 1
(AL844505) Plasmodium falciparum 3D7 chromosome 6. 44 4.9 1
(AE014134) Drosophila melanogaster chromosome 2L, complete s... 44 4.9 1
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 44 4.9 1
(AC007467) Drosophila melanogaster, chromosome 2L, region 38... 44 4.9 1
(AC007144) Drosophila melanogaster, chromosome 2L, region 38... 44 4.9 1
(EF444992) Homo sapiens laminin alpha-3 chain precursor (LAM... 44 4.9 1
(AL512697) Homo sapiens genomic DNA; cDNA DKFZp547F134 (from... 44 4.9 1
(AL356601) Human DNA sequence from clone RP11-486D20 on chro... 44 4.9 1
(AL355599) Human DNA sequence from clone RP11-476C5 on chrom... 44 4.9 1
(AL161899) Human DNA sequence from clone RP11-418I10 on chro... 44 4.9 1
(AL161747) Human chromosome 14 DNA sequence BAC R-689J19 of ... 44 4.9 1
(AL159995) Human DNA sequence from clone RP11-2G13 on chromo... 44 4.9 1
(AL049198) Human DNA sequence from clone RP4-590K14 on chrom... 44 4.9 1
(AC143336) Homo sapiens chromosome 5 clone RP11-1315F8, comp... 44 4.9 1
(AC129917) Homo sapiens chromosome 17, clone RP11-279B10, co... 44 4.9 1
(AC125415) Homo sapiens chromosome 17, clone CTD-2309P3, com... 44 4.9 1
(AC110809) Homo sapiens BAC clone RP11-754E11 from 4, comple... 44 4.9 1
(AC099343) Homo sapiens BAC clone RP11-326I11 from 4, comple... 44 4.9 1
(AC090616) Homo sapiens chromosome 17, clone RP11-640N20, co... 44 4.9 1
(AC083905) Homo sapiens 3 BAC RP11-124N24 (Roswell Park Canc... 44 4.9 1
(AC026775) Homo sapiens chromosome 5 clone CTC-244L19, compl... 44 4.9 1
(AC019072) Homo sapiens BAC clone RP11-289A15 from chromosom... 44 4.9 1
(AC012488) Homo sapiens BAC clone RP11-88L20 from 2, complet... 44 4.9 1
(AC011979) Homo sapiens chromosome 11, clone RP11-16F15, com... 44 4.9 1
(AC009139) Homo sapiens chromosome 16 clone RP11-538I12, com... 44 4.9 1
(AC008502) Homo sapiens chromosome 5 clone CTC-442G11, compl... 44 4.9 1
(AB050050) Homo sapiens MCCB gene for non-biotin containing ... 44 4.9 1
(AC160766) Bos taurus clone CH240-97H20, WORKING DRAFT SEQUE... 44 4.9 1
(AC160369) Bos taurus clone CH240-90O12, WORKING DRAFT SEQUE... 44 4.9 1
(AC149457) Papio anubis clone RP41-397E5, WORKING DRAFT SEQU... 44 4.9 1
(AC149170) Papio anubis clone RP41-209A15, WORKING DRAFT SEQ... 44 4.9 1
(AC138960) Homo sapiens chromosome 5 clone RP11-881J15, WORK... 44 4.9 1
(AC127530) Homo sapiens chromosome 17 clone RP11-1403G4 map ... 44 4.9 1
(AC118312) Rattus norvegicus clone CH230-472G7, *** SEQUENCI... 44 4.9 1
(AC102571) Mus musculus clone RP23-233J19, WORKING DRAFT SEQ... 44 4.9 1
(FP236561) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.9 1
(FP102898) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.9 1
(FP102783) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 4.9 1
(FP086611) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 4.9 1
(CU929951) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.9 1
(CU929869) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.9 1
(CU914640) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.9 1
(CU896659) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 4.9 1
(CU861578) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.9 1
(CU672274) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.9 1
(CU640373) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.9 1
(CU633946) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.9 1
(CU633941) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.9 1
(CU582967) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.9 1
(CU570850) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.9 1
(CU469014) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.9 1
(AC093287) Homo sapiens chromosome 5 clone RP11-459N10, WORK... 44 4.9 1
(AC090689) Homo sapiens chromosome 15 clone RP11-811G14 map ... 44 4.9 1
(AC084049) Homo sapiens chromosome 4 clone RP11-274E20, WORK... 44 4.9 1
(AC069033) Homo sapiens clone RP11-456A17, WORKING DRAFT SEQ... 44 4.9 1
(AC067814) Homo sapiens chromosome 5 clone RP11-772J17 map 5... 44 4.9 1
(AC026932) Homo sapiens chromosome 1 clone RP11-181G12 map 1... 44 4.9 1
(AC025958) Homo sapiens chromosome 5 clone RP11-247M10 map 5... 44 4.9 1
(CU467023) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.9 1
(CU463203) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.9 1
(CU302243) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.9 1
(CU062652) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.9 1
(CU013547) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 4.9 1
(BX511220) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 4.9 1
(AP001173) Homo sapiens genomic DNA, chromosome 18p11.2 clon... 44 4.9 1
(AL512364) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 4.9 1
(AC232175) Lama pacos clone CH246-232F1, WORKING DRAFT SEQUE... 44 4.9 1
(AC224028) Bos taurus clone CH240-451P24, WORKING DRAFT SEQU... 44 4.9 1
(AC223028) Bos taurus clone CH240-431G16, WORKING DRAFT SEQU... 44 4.9 1
(AC222374) Bos taurus clone CH240-416J14, WORKING DRAFT SEQU... 44 4.9 1
(AC222004) Bos taurus clone CH240-375K8, WORKING DRAFT SEQUE... 44 4.9 1
(AC213361) Pongo abelii chromosome UNKNOWN clone CH276-406N2... 44 4.9 1
(AC194508) Colobus guereza clone CH272-29H11, WORKING DRAFT ... 44 4.9 1
(AC193555) Macaca mulatta clone CH250-177B8, WORKING DRAFT S... 44 4.9 1
(AC192017) Cavia porcellus clone CH234-368M13, WORKING DRAFT... 44 4.9 1
(AC191891) Atelerix albiventris clone LB4-144G3, WORKING DRA... 44 4.9 1
(AC185897) Bos taurus clone RP42-137D15, WORKING DRAFT SEQUE... 44 4.9 1
(AC184889) Bos taurus clone CH240-384A23, WORKING DRAFT SEQU... 44 4.9 1
(AC184214) Strongylocentrotus purpuratus clone R3-25K15, WOR... 44 4.9 1
(AC184159) Strongylocentrotus purpuratus clone R3-1004C15, *... 44 4.9 1
(AC181207) Strongylocentrotus purpuratus clone R3-115P4, WOR... 44 4.9 1
(AC178907) Strongylocentrotus purpuratus clone R3-3114O12, W... 44 4.9 1
(AC177103) Strongylocentrotus purpuratus clone R3-4012P13, W... 44 4.9 1
(AC175155) Bos taurus clone CH240-293G3, WORKING DRAFT SEQUE... 44 4.9 1
(AC174397) Aotus nancymaae clone CH258-393C19, WORKING DRAFT... 44 4.9 1
(AC172181) Atelerix albiventris clone LB4-438I4, WORKING DRA... 44 4.9 1
(AC171749) Atelerix albiventris clone LB4-14J15, WORKING DRA... 44 4.9 1
(AC171742) Microcebus murinus clone CH257-88C12, WORKING DRA... 44 4.9 1
(AC167029) Bos taurus clone CH240-187F5, WORKING DRAFT SEQUE... 44 4.9 1
(AC165930) Bos taurus clone CH240-168K8, WORKING DRAFT SEQUE... 44 4.9 1
(AC165376) Gorilla gorilla gorilla clone CH255-109J3, WORKIN... 44 4.9 1
(AC023278) Homo sapiens chromosome 17 clone RP11-640N20, WOR... 44 4.9 1
(AC021003) Homo sapiens chromosome 4 clone RP11-563D23 map 4... 44 4.9 1
(AC017529) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 4.9 1
(AC011987) Homo sapiens clone RP11-19B13, WORKING DRAFT SEQU... 44 4.9 1
(AZ564360) RPCI-23-208O4.TV RPCI-23 Mus musculus genomic clo... 44 4.9 1
(AZ059591) RPCI-23-403A14.TV RPCI-23 Mus musculus genomic cl... 44 4.9 1
(FT205388) Rattus norvegicus DNA, BAC clone: RNB2-420D05, 3'... 44 4.9 1
(AQ506333) RPCI-11-299N4.TV RPCI-11 Homo sapiens genomic clo... 44 4.9 1
(FI244612) CccaBb025-P9JF CccABb Cajanus cajan genomic clone... 44 4.9 1
(FH240475) CHO_OF3106xc15f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 4.9 1
(ET072840) QM0AAA7CB02FM1 CCL1 Citrus clementina genomic clo... 44 4.9 1
(AM628934) Entamoeba dispar GSS, clone dispar31c09.q1k. 44 4.9 1
(AL986772) Danio rerio genomic clone DKEY-37B11, genomic sur... 44 4.9 1
(EJ550470) 1092959438805 Global-Ocean-Sampling_GS-29-01-01-1... 44 4.9 1
(EI889305) CAH1-60G9TV CAA1Ba Cicer arietinum genomic clone ... 44 4.9 1
(EI779779) CHORI518001J03TR BAC library from the breast cell... 44 4.9 1
(DX478061) Cpl20328 Papaya Genomic DNA BAC Library Carica pa... 44 4.9 1
(DU894046) 396438 Tomato HindIII BAC Library Solanum lycoper... 44 4.9 1
(DU889601) 387723 Tomato HindIII BAC Library Solanum lycoper... 44 4.9 1
(DU872457) 105360 Tomato HindIII BAC Library Solanum lycoper... 44 4.9 1
(DU850379) 45385 Tomato HindIII BAC Library Solanum lycopers... 44 4.9 1
(AJ561378) Cryptosporidium parvum GSS, PAC clone pica_0002_a... 44 4.9 1
(CT381517) Sus scrofa genomic clone CH242-339E11, genomic su... 44 4.9 1
(CT073741) Sus scrofa genomic clone PigE-110O21, genomic sur... 44 4.9 1
(AG763733) Macaca fuscata fuscata DNA, clone: MSB2-234G12_R,... 44 4.9 1
(CL646358) CH213-113K06.SP6 CH213 Gasterosteus aculeatus gen... 44 4.9 1
(CL508860) SAIL_803_F08.v1 SAIL Collection Arabidopsis thali... 44 4.9 1

>(AU072419) Dictyostelium discoideum slug cDNA, clone SSE454.
Length = 240

Score = 341 bits (172), Expect = 2e-89
Identities = 172/172 (100%)
Strand = Plus / Plus


Query: 69 caactatttatggatagattgattgattatgataatcatgttgcatattcaataattgtt 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 caactatttatggatagattgattgattatgataatcatgttgcatattcaataattgtt 128


Query: 129 gaagattatggattatataaaccaactgatgatgatttcatctattcaattaatcaagga 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gaagattatggattatataaaccaactgatgatgatttcatctattcaattaatcaagga 188


Query: 189 tcatttaatatatcactttatttaatatcatcaaaccaaattataattaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tcatttaatatatcactttatttaatatcatcaaaccaaattataattaata 240

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 508,408,795
Number of extensions: 36810383
Number of successful extensions: 3599600
Number of sequences better than 10.0: 695
Length of query: 476
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 453
Effective length of database: 102,190,702,835
Effective search space: 46292388384255
Effective search space used: 46292388384255
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7.31
Homology vs Protein
Query= Contig-U05002-1 (Contig-U05002-1Q) /CSM_Contig/Contig-U05002-1Q.Seq.d
(476 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 254,984,010
Number of extensions: 3054053
Number of successful extensions: 7142
Number of sequences better than 10.0: 0
Number of HSP's gapped: 7142
Number of HSP's successfully gapped: 0
Length of query: 158
Length of database: 1,061,185,681
Length adjustment: 118
Effective length of query: 40
Effective length of database: 675,508,817
Effective search space: 27020352680
Effective search space used: 27020352680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.31 gvh: 0.15 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 2.05 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

80.0 %: nuclear
12.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for Contig-U05002-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0