Contig-U04993-1 |
Contig ID |
Contig-U04993-1 |
Contig update |
2001. 8.29 |
Contig sequence |
|
Gap |
no gap |
Contig length |
339 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
1480887 |
End point |
1481226 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U04993 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
Query= Contig-U04993-1 (Contig-U04993-1Q) /CSM_Contig/Contig-U04993-1Q.Seq.d (339 letters)
Database: CSM 6905 sequences; 5,674,871 total letters
Score E Sequences producing significant alignments: (bits) Value
Contig-U04993-1 (Contig-U04993-1Q) /CSM_Contig/Conti... 226 1e-59 Contig-U06258-1 (Contig-U06258-1Q) /CSM_Contig/Conti... 42 4e-04 Contig-U14897-1 (Contig-U14897-1Q) /CSM_Contig/Conti... 40 0.001 Contig-U14773-1 (Contig-U14773-1Q) /CSM_Contig/Conti... 40 0.001 Contig-U14356-1 (Contig-U14356-1Q) /CSM_Contig/Conti... 40 0.001 Contig-U13793-1 (Contig-U13793-1Q) /CSM_Contig/Conti... 40 0.001 Contig-U13464-1 (Contig-U13464-1Q) /CSM_Contig/Conti... 40 0.001 Contig-U13414-1 (Contig-U13414-1Q) /CSM_Contig/Conti... 40 0.001 Contig-U13037-1 (Contig-U13037-1Q) /CSM_Contig/Conti... 40 0.001 Contig-U12134-1 (Contig-U12134-1Q) /CSM_Contig/Conti... 40 0.001
>Contig-U04993-1 (Contig-U04993-1Q) /CSM_Contig/Contig-U04993-1Q.Seq.d Length = 339
Score = 226 bits (114), Expect = 1e-59 Identities = 114/114 (100%) Strand = Plus / Plus
Query: 226 ttattgattggtgtgataaaaattatagtgacattaatgaattaaaaagagttgatgttt 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 226 ttattgattggtgtgataaaaattatagtgacattaatgaattaaaaagagttgatgttt 285
Query: 286 taactttaatagaaacacataatttattagacaatagtaaattatcatatgacc 339 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 286 taactttaatagaaacacataatttattagacaatagtaaattatcatatgacc 339
Score = 89.7 bits (45), Expect = 2e-18 Identities = 45/45 (100%) Strand = Plus / Plus
Query: 54 taaattgatttttcaaataataataataccacacccaaacacact 98 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 54 taaattgatttttcaaataataataataccacacccaaacacact 98
Score = 48.1 bits (24), Expect = 6e-06 Identities = 24/24 (100%) Strand = Plus / Plus
Query: 163 tggaacatctttgtagaattaact 186 |||||||||||||||||||||||| Sbjct: 163 tggaacatctttgtagaattaact 186
Score = 42.1 bits (21), Expect = 4e-04 Identities = 21/21 (100%) Strand = Plus / Plus
Query: 1 gtttttttttttttttatatt 21 ||||||||||||||||||||| Sbjct: 1 gtttttttttttttttatatt 21
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 53 ttttttttttttttt 39
>Contig-U06258-1 (Contig-U06258-1Q) /CSM_Contig/Contig-U06258-1Q.Seq.d Length = 338
Score = 42.1 bits (21), Expect = 4e-04 Identities = 21/21 (100%) Strand = Plus / Minus
Query: 1 gtttttttttttttttatatt 21 ||||||||||||||||||||| Sbjct: 114 gtttttttttttttttatatt 94
Score = 34.2 bits (17), Expect = 0.092 Identities = 17/17 (100%) Strand = Plus / Minus
Query: 2 tttttttttttttttat 18 ||||||||||||||||| Sbjct: 337 tttttttttttttttat 321
Score = 32.2 bits (16), Expect = 0.36 Identities = 16/16 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttta 17 |||||||||||||||| Sbjct: 79 ttttttttttttttta 64
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 90 ttttttttttttttt 76
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 87 ttttttttttttttt 73
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 88 ttttttttttttttt 74
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 338 ttttttttttttttt 324
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 91 ttttttttttttttt 77
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 92 ttttttttttttttt 78
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 83 ttttttttttttttt 69
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 86 ttttttttttttttt 72
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 81 ttttttttttttttt 67
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 89 ttttttttttttttt 75
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 82 ttttttttttttttt 68
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 85 ttttttttttttttt 71
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 80 ttttttttttttttt 66
Score = 30.2 bits (15), Expect = 1.4 Identities = 18/19 (94%) Strand = Plus / Minus
Query: 3 ttttttttttttttatatt 21 |||||||||||||| |||| Sbjct: 338 ttttttttttttttttatt 320
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 84 ttttttttttttttt 70
>Contig-U14897-1 (Contig-U14897-1Q) /CSM_Contig/Contig-U14897-1Q.Seq.d Length = 733
Score = 40.1 bits (20), Expect = 0.001 Identities = 20/20 (100%) Strand = Plus / Minus
Query: 2 tttttttttttttttatatt 21 |||||||||||||||||||| Sbjct: 173 tttttttttttttttatatt 154
Score = 32.2 bits (16), Expect = 0.36 Identities = 16/16 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttta 17 |||||||||||||||| Sbjct: 662 ttttttttttttttta 647
Score = 32.2 bits (16), Expect = 0.36 Identities = 16/16 (100%) Strand = Plus / Minus
Query: 1 gttttttttttttttt 16 |||||||||||||||| Sbjct: 175 gttttttttttttttt 160
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 721 ttttttttttttttt 707
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 728 ttttttttttttttt 714
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 725 ttttttttttttttt 711
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 715 ttttttttttttttt 701
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 724 ttttttttttttttt 710
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 726 ttttttttttttttt 712
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 727 ttttttttttttttt 713
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 713 ttttttttttttttt 699
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 729 ttttttttttttttt 715
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 712 ttttttttttttttt 698
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 718 ttttttttttttttt 704
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 717 ttttttttttttttt 703
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 714 ttttttttttttttt 700
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 716 ttttttttttttttt 702
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 723 ttttttttttttttt 709
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 731 ttttttttttttttt 717
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 730 ttttttttttttttt 716
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 719 ttttttttttttttt 705
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 732 ttttttttttttttt 718
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 722 ttttttttttttttt 708
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 720 ttttttttttttttt 706
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 733 ttttttttttttttt 719
Score = 30.2 bits (15), Expect = 1.4 Identities = 15/15 (100%) Strand = Plus / Minus
Query: 2 ttttttttttttttt 16 ||||||||||||||| Sbjct: 711 ttttttttttttttt 697
Database: CSM Posted date: Jun 9, 2004 7:35 PM Number of letters in database: 5,674,871 Number of sequences in database: 6905 Lambda K H 1.37 0.711 1.31
Gapped Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 111,637 Number of Sequences: 6905 Number of extensions: 111637 Number of successful extensions: 70822 Number of sequences better than 10.0: 3373 length of query: 339 length of database: 5,674,871 effective HSP length: 15 effective length of query: 324 effective length of database: 5,571,296 effective search space: 1805099904 effective search space used: 1805099904 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 14 (28.2 bits)
|
dna update |
2009. 7. 6 |
Homology vs DNA |
|
protein update |
2009. 7.31 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |