Contig-U04991-1 |
Contig ID |
Contig-U04991-1 |
Contig update |
2001. 8.29 |
Contig sequence |
|
Gap |
no gap |
Contig length |
868 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
2624821 |
End point |
2625680 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U04991 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2009. 7. 6 |
Homology vs DNA |
Query= Contig-U04991-1 (Contig-U04991-1Q) /CSM_Contig/Contig-U04991-1Q.Seq.d (868 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU037836) Dictyostelium discoideum slug cDNA, clone SSE354. 630 0.0 2 (ED466343) AUAC-aaf12a04.g1 Ascaris suum whole genome shotgu... 52 0.036 1 (AC201442) Strongylocentrotus purpuratus clone R3-3021P18, W... 42 0.096 3 (AC143303) Macaca mulatta clone CH250-270E14, *** SEQUENCING... 50 0.14 1 (FC820397) Sr_pAMT7_017j07_T7 S. ratti mixed stage pAMP Stro... 34 0.41 2 (CD524085) kw20h06.y1 Strongyloides ratti PA female naive pA... 34 0.42 2 (CU896585) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 0.50 3 (AL391873) Human DNA sequence from clone RP11-399N11 on chro... 48 0.57 1 (AC074023) Homo sapiens chromosome 13 clone RP11-544G18, WOR... 48 0.57 1 (AL359812) Human DNA sequence *** SEQUENCING CANCELLED *** f... 48 0.57 1 (FI111895) CMHD-GT_535E12-3 GTL_R1_UPA Mus musculus cDNA clo... 48 0.57 1 (AC118680) Mus musculus chromosome 8, clone RP24-381G7, comp... 40 0.82 5 (CZ161293) OR_ABa0002I20.r OR_ABa Oryza ridleyi genomic clon... 32 1.6 2 (AL390861) Human DNA sequence *** SEQUENCING CANCELLED *** f... 46 2.0 2 (EU686400) Ambystoma mexicanum clone BAC H3_1D2, complete se... 46 2.2 1 (AL929222) Zebrafish DNA sequence from clone DKEY-31N5. 46 2.2 1 (BV490869) S221P6280FH7.T0 Yvonne Pan troglodytes troglodyte... 46 2.2 1 (BV472592) G591P628196FC1.T0 Clint Pan troglodytes verus STS... 46 2.2 1 (BV461073) rbi59d01.g1 Clint Pan troglodytes verus STS genom... 46 2.2 1 (AC193036) Pan troglodytes BAC clone CH251-550E10 from chrom... 46 2.2 1 (AL139112) Human DNA sequence from clone GS1-103B18 on chrom... 46 2.2 1 (AC114321) Homo sapiens chromosome 5 clone RP11-710L15, comp... 46 2.2 1 (AC091609) Homo sapiens chromosome 1 clone RP11-109I2, compl... 46 2.2 1 (AC008499) Homo sapiens chromosome 5 clone CTC-438O3, comple... 46 2.2 1 (EU686411) Ambystoma mexicanum clone BAC H3_67L15, *** SEQUE... 46 2.2 1 (CT573470) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.2 1 (CT025722) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.2 1 (CR392022) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.2 1 (AL592210) Homo sapiens chromosome 1 *** SEQUENCING CANCELLE... 46 2.2 1 (AL356366) Human DNA sequence *** SEQUENCING CANCELLED *** f... 46 2.2 1 (AC221271) Bos taurus clone CH240-401L21, WORKING DRAFT SEQU... 46 2.2 1 (AC025745) Homo sapiens chromosome 5 clone RP11-710L15, WORK... 46 2.2 1 (AC016552) Homo sapiens chromosome 5 clone CTC-285M15, WORKI... 46 2.2 1 (FH211159) CHO_OF3230xn02r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 2.2 1 (EJ307517) 1095390107647 Global-Ocean-Sampling_GS-27-01-01-1... 46 2.2 1 (ED409309) AUAC-aah83h03.g1 Ascaris suum whole genome shotgu... 46 2.2 1 (BH646744) BOMOL11TF BO_2_3_KB Brassica oleracea genomic clo... 46 2.2 1 (BW995350) Cryptomeria japonica cDNA, clone: CM03700, 3' end... 46 2.2 1 (FG778096) G1147P317FM17.T0 Anolis carolinensis pooled norma... 46 2.2 1 (FG673665) G1143P310FI22.T0 Anolis carolinensis pooled norma... 46 2.2 1 (CC362890) PUHQV52TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 40 3.9 2 (CU467804) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 4.3 2 (CF358908) rl52b12.y1 Meloidogyne javanica J2 SMART pGEM Mel... 40 4.8 2 (CF350859) rl56c06.y1 Meloidogyne javanica J2 SMART pGEM Mel... 40 4.8 2 (CF358930) rl52e05.y1 Meloidogyne javanica J2 SMART pGEM Mel... 40 4.9 2 (AL954179) Zebrafish DNA sequence from clone DKEY-33I12. 42 5.1 3 (CT025874) Zebrafish DNA sequence from clone DKEY-170I22 in ... 42 5.9 3 (BZ389234) EINBR11TF EI_10_12_KB Entamoeba invadens genomic ... 36 6.7 2 (AC140969) Canis lupus familiaris clone RP81-197A18, WORKING... 36 8.5 5 (AC172412) Strongylocentrotus purpuratus clone R3-14G11, WOR... 42 8.7 4 (AC145068) Mus musculus chromosome 8, clone RP23-197G5, comp... 40 8.9 4 (CU570988) Zebrafish DNA sequence from clone CH73-45O6 in li... 44 8.9 1 (CU041363) Zebrafish DNA sequence from clone CH73-286N19 in ... 44 8.9 1 (CT009595) Zebrafish DNA sequence from clone DKEY-97K17 in l... 44 8.9 1 (CR936277) Zebrafish DNA sequence from clone DKEY-36I10 in l... 44 8.9 1 (CR855309) Zebrafish DNA sequence from clone DKEY-35B7 in li... 44 8.9 1 (CR589941) Zebrafish DNA sequence from clone DKEY-39C10 in l... 44 8.9 1 (BX470196) Zebrafish DNA sequence from clone CH211-157J23 in... 44 8.9 1 (BX470065) Zebrafish DNA sequence from clone DKEY-105H11 in ... 44 8.9 1 (BX323463) Zebrafish DNA sequence from clone DKEY-169J7 in l... 44 8.9 1 (BX004976) Zebrafish DNA sequence from clone CH211-276C7. 44 8.9 1 (AL807377) Zebrafish DNA sequence from clone CH211-229G3. 44 8.9 1 (CR974485) Mouse DNA sequence from clone RP23-112H14 on chro... 44 8.9 1 (AC155640) Mus musculus 10 BAC RP24-87H21 (Roswell Park Canc... 44 8.9 1 (AC154040) Mus musculus 10 BAC RP23-348E15 (Roswell Park Can... 44 8.9 1 (M68929) Marchantia polymorpha mitochondrion, complete genome. 44 8.9 1 (AC188653) Canis familiaris chromosome 20, clone XX-436O14, ... 44 8.9 1 (AE014296) Drosophila melanogaster chromosome 3L, complete s... 44 8.9 1 (AC113250) Drosophila melanogaster 3L BAC RP98-6P13 (Roswell... 44 8.9 1 (AC160596) Loxodonta africana clone VMRC15-11O14, WORKING DR... 44 8.9 1 (AC155676) Bos taurus clone CH240-40P17, WORKING DRAFT SEQUE... 44 8.9 1 (AC123164) Rattus norvegicus clone CH230-166O19, *** SEQUENC... 44 8.9 1 (AC114705) Rattus norvegicus clone CH230-66E17, WORKING DRAF... 44 8.9 1 (AC112278) Rattus norvegicus clone CH230-32C22, WORKING DRAF... 44 8.9 1 (AC094466) Rattus norvegicus clone CH230-4A7, WORKING DRAFT ... 44 8.9 1 (CU467650) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 8.9 1 (AC219360) Bos taurus clone CH240-338F13, WORKING DRAFT SEQU... 44 8.9 1 (AC185196) Felis catus clone RP86-86E21, WORKING DRAFT SEQUE... 44 8.9 1 (AC014426) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 8.9 1 (AC010050) Drosophila melanogaster chromosome 3L/71F1 clone ... 44 8.9 1 (BH303782) CH230-4A7.TV CHORI-230 Segment 1 Rattus norvegicu... 44 8.9 1 (EK415246) 1095506310030 Global-Ocean-Sampling_GS-31-01-01-1... 44 8.9 1 (EK243899) 1095460245316 Global-Ocean-Sampling_GS-31-01-01-1... 44 8.9 1 (EK233145) 1095460189280 Global-Ocean-Sampling_GS-31-01-01-1... 44 8.9 1 (EK193509) 1095460028953 Global-Ocean-Sampling_GS-31-01-01-1... 44 8.9 1 (EI668703) TAACSP3AShA_0020M01F TAACSP3AShA Triticum aestivu... 44 8.9 1 (DU901442) 423810 Tomato HindIII BAC Library Solanum lycoper... 44 8.9 1 (DU888326) 389947 Tomato HindIII BAC Library Solanum lycoper... 44 8.9 1 (AL002047) F.rubripes GSS sequence, clone 045G19aC12. 44 8.9 1 (CZ980341) 190239 Tomato MboI BAC Library Solanum lycopersic... 44 8.9 1 (CU115622) Equus caballus GSS, BAC clone CH241-227M2, SP6 en... 44 8.9 1 (BZ094331) CH230-141M19.TJC CHORI-230 Segment 1 Rattus norve... 44 8.9 1 (BX180861) Danio rerio genomic clone DKEY-178A4, genomic sur... 44 8.9 1 (EL488481) CHUS3709.b1_I16.ab1 CHU(LMS) puzzle sunflower Hel... 44 8.9 1 (EL430070) CHCM9206.b1_L22.ab1 CHC(LMS) Texas blueweed Helia... 44 8.9 1 (EB575844) AGENCOURT_51774468 D. ananassae EST Drosophila an... 44 8.9 1 (DY808917) CTOX17333.b1_I13.ab1 CTO(XYZ) dandelion Taraxacum... 44 8.9 1 (DN080889) JGI_CABD12713.rev NIH_XGC_tropLun1 Xenopus (Silur... 44 8.9 1 (CV625645) L_AJ-aaa22g11.g1 Hc6AR_M Ajellomyces capsulatus c... 44 8.9 1 (FM962040) Glossina morsitans morsitans EST, clone GMsg32b03... 44 8.9 1 (EV252836) EST_cclu_evb_470026 ccluevb mixed_tissue Coregonu... 44 8.9 1 (EV252835) EST_cclu_evb_469642 ccluevb mixed_tissue Coregonu... 44 8.9 1 (CP000743) Methanococcus aeolicus Nankai-3, complete genome. 44 8.9 1
>(AU037836) Dictyostelium discoideum slug cDNA, clone SSE354. Length = 594
Score = 630 bits (318), Expect(2) = 0.0 Identities = 318/318 (100%) Strand = Plus / Plus
Query: 276 gactgcttttttaattaattcattatttggttcattttgtttaaaatatatagtggaacg 335 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gactgcttttttaattaattcattatttggttcattttgtttaaaatatatagtggaacg 60
Query: 336 atcaaagaaatgtttagatcattcagctacagttacatttatacattttattatagtttg 395 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 atcaaagaaatgtttagatcattcagctacagttacatttatacattttattatagtttg 120
Query: 396 gattgtttcaggattcccaaagacagtagtttggtgggcaattcaattgattggtatggt 455 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 gattgtttcaggattcccaaagacagtagtttggtgggcaattcaattgattggtatggt 180
Query: 456 tataatggcaatgattggtgaatatttatgtatgcgtaaagagttaatggatataccatt 515 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tataatggcaatgattggtgaatatttatgtatgcgtaaagagttaatggatataccatt 240
Query: 516 acaaagaggaaaagatttagattcaactccaatcacaattccaccatcacctcatacttc 575 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 acaaagaggaaaagatttagattcaactccaatcacaattccaccatcacctcatacttc 300
Query: 576 atcaccaattatgaatcc 593 |||||||||||||||||| Sbjct: 301 atcaccaattatgaatcc 318
Score = 157 bits (79), Expect(2) = 0.0 Identities = 79/79 (100%) Strand = Plus / Plus
Query: 712 aatccctaccaaccaatcgaattggagattttaacacatcaagataaacaggatgaacat 771 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 437 aatccctaccaaccaatcgaattggagattttaacacatcaagataaacaggatgaacat 496
Query: 772 gatgattgataatcaattt 790 ||||||||||||||||||| Sbjct: 497 gatgattgataatcaattt 515
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 737,701,279 Number of extensions: 46524919 Number of successful extensions: 4204144 Number of sequences better than 10.0: 104 Length of query: 868 Length of database: 101,790,757,118 Length adjustment: 24 Effective length of query: 844 Effective length of database: 99,340,224,878 Effective search space: 83843149797032 Effective search space used: 83843149797032 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.31 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |