Contig-U04991-1
Contig ID Contig-U04991-1
Contig update 2001. 8.29
Contig sequence
>Contig-U04991-1 (Contig-U04991-1Q) /CSM_Contig/Contig-U04991-1Q.Seq.d
AAAGAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAATACACAAACAAAAATAAAAATTAAAAATGTTTTATAAATATAATG
CTTGGGATCCCAAGTTAATTATAGGACAGATTTTATCAATACAATGTTTA
TATTATATATTATTAGCAGGTATATTATACCTGTTAGATTCAATGTTTTC
ATCATCCTTATCATTAGAACAAATGTTTGAATATCAATCAATCAATACTC
ATTCTCAAAGTGGTAAAGTTGTTATGACTGCTTTTTTAATTAATTCATTA
TTTGGTTCATTTTGTTTAAAATATATAGTGGAACGATCAAAGAAATGTTT
AGATCATTCAGCTACAGTTACATTTATACATTTTATTATAGTTTGGATTG
TTTCAGGATTCCCAAAGACAGTAGTTTGGTGGGCAATTCAATTGATTGGT
ATGGTTATAATGGCAATGATTGGTGAATATTTATGTATGCGTAAAGAGTT
AATGGATATACCATTACAAAGAGGAAAAGATTTAGATTCAACTCCAATCA
CAATTCCACCATCACCTCATACTTCATCACCAATTATGAATCCAAAAAAT
AATAGTAATGGAAATAGTGGAAGTAATAATAATAATAATAATATCTTTAG
TAATAGTATAAATAGTAGTGGTGGTAGCAGTAGTAGTATCAACAGTATTG
GAAATAGTAATAATCCCTACCAACCAATCGAATTGGAGATTTTAACACAT
CAAGATAAACAGGATGAACATGATGATTGATAATCAATTTAAAAAAAAAA
AAAAAAATAAAAAAAATAAAAAAAATAAAAAAAATAAAAACAAGATCGTA
CAATTGTAAAAAAAAAAA

Gap no gap
Contig length 868
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 2624821
End point 2625680
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U04991
List of clone(s)

est1=SSE354E,1,869
Translated Amino Acid sequence
keekkkkkkkkkkkkkkkihkqk*KLKMFYKYNAWDPKLIIGQILSIQCLYYILLAGILY
LLDSMFSSSLSLEQMFEYQSINTHSQSGKVVMTAFLINSLFGSFCLKYIVERSKKCLDHS
ATVTFIHFIIVWIVSGFPKTVVWWAIQLIGMVIMAMIGEYLCMRKELMDIPLQRGKDLDS
TPITIPPSPHTSSPIMNPKNNSNGNSGSNNNNNNIFSNSINSSGGSSSSINSIGNSNNPY
QPIELEILTHQDKQDEHDD**si*kkkkk*kk*kk*kk*kqdrtivkkk


Translated Amino Acid sequence (All Frames)
Frame A:
keekkkkkkkkkkkkkkkihkqk*KLKMFYKYNAWDPKLIIGQILSIQCLYYILLAGILY
LLDSMFSSSLSLEQMFEYQSINTHSQSGKVVMTAFLINSLFGSFCLKYIVERSKKCLDHS
ATVTFIHFIIVWIVSGFPKTVVWWAIQLIGMVIMAMIGEYLCMRKELMDIPLQRGKDLDS
TPITIPPSPHTSSPIMNPKNNSNGNSGSNNNNNNIFSNSINSSGGSSSSINSIGNSNNPY
QPIELEILTHQDKQDEHDD**si*kkkkk*kk*kk*kk*kqdrtivkkk


Frame B:
kkkkkkkkkkkkkkkkkkytnknkn*kcfinimlgips*l*drfyqynvyiiyy*qvyyt
c*iqcfhhpyh*nkclninqsililkvvkll*llf*lihylvhfv*ni*wndqrnv*iiq
lqlhlyill*fglfqdsqrq*fggqfn*lvwl*wq*lvniyvcvks*wiyhykeeki*iq
lqsqfhhhlilhhql*iqkiivmeiveviiiiiislviv*ivvvvavvvstvleiviipt
nqsnwrf*hikinrmnmmidnqfkkkkknkknkknkknknkivql*kkk


Frame C:
rrkkkkkkkkkkkkkkkntqtkikiknvl*i*clgsqvnyrtdfintmfilyiisryiip
vrfnvfiiliirtnv*isinqysfskw*scydcffn*fiiwfilfkiysgtikemfrsfs
ysyiytfyysldcfripkdsslvgnsidwygyngndw*ifmya*rvngytitkrkrfrfn
snhnstitsyfitnyeskk***wk*wk******yl***yk**ww*q**yqqywk***slp
tnrigdfntsr*tg*t**liinlkkkkkikkikkikkiktrsynckkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U04991-1 (Contig-U04991-1Q)
/CSM_Contig/Contig-U04991-1Q.Seq.d
(868 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04991-1 (Contig-U04991-1Q) /CSM_Contig/Conti... 821 0.0
Contig-U04444-1 (Contig-U04444-1Q) /CSM_Contig/Conti... 36 0.061
Contig-U13625-1 (Contig-U13625-1Q) /CSM_Contig/Conti... 34 0.24
Contig-U11753-1 (Contig-U11753-1Q) /CSM_Contig/Conti... 34 0.24
Contig-U11745-1 (Contig-U11745-1Q) /CSM_Contig/Conti... 34 0.24
Contig-U11214-1 (Contig-U11214-1Q) /CSM_Contig/Conti... 34 0.24
Contig-U10985-1 (Contig-U10985-1Q) /CSM_Contig/Conti... 34 0.24
Contig-U10952-1 (Contig-U10952-1Q) /CSM_Contig/Conti... 34 0.24
Contig-U10802-1 (Contig-U10802-1Q) /CSM_Contig/Conti... 34 0.24
Contig-U08884-1 (Contig-U08884-1Q) /CSM_Contig/Conti... 34 0.24

>Contig-U04991-1 (Contig-U04991-1Q) /CSM_Contig/Contig-U04991-1Q.Seq.d
Length = 868

Score = 821 bits (414), Expect = 0.0
Identities = 414/414 (100%)
Strand = Plus / Plus


Query: 180 cctgttagattcaatgttttcatcatccttatcattagaacaaatgtttgaatatcaatc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 cctgttagattcaatgttttcatcatccttatcattagaacaaatgtttgaatatcaatc 239


Query: 240 aatcaatactcattctcaaagtggtaaagttgttatgactgcttttttaattaattcatt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aatcaatactcattctcaaagtggtaaagttgttatgactgcttttttaattaattcatt 299


Query: 300 atttggttcattttgtttaaaatatatagtggaacgatcaaagaaatgtttagatcattc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atttggttcattttgtttaaaatatatagtggaacgatcaaagaaatgtttagatcattc 359


Query: 360 agctacagttacatttatacattttattatagtttggattgtttcaggattcccaaagac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 agctacagttacatttatacattttattatagtttggattgtttcaggattcccaaagac 419


Query: 420 agtagtttggtgggcaattcaattgattggtatggttataatggcaatgattggtgaata 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 agtagtttggtgggcaattcaattgattggtatggttataatggcaatgattggtgaata 479


Query: 480 tttatgtatgcgtaaagagttaatggatataccattacaaagaggaaaagatttagattc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tttatgtatgcgtaaagagttaatggatataccattacaaagaggaaaagatttagattc 539


Query: 540 aactccaatcacaattccaccatcacctcatacttcatcaccaattatgaatcc 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 aactccaatcacaattccaccatcacctcatacttcatcaccaattatgaatcc 593


Score = 202 bits (102), Expect = 5e-52
Identities = 102/102 (100%)
Strand = Plus / Plus


Query: 689 tcaacagtattggaaatagtaataatccctaccaaccaatcgaattggagattttaacac 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tcaacagtattggaaatagtaataatccctaccaaccaatcgaattggagattttaacac 748


Query: 749 atcaagataaacaggatgaacatgatgattgataatcaattt 790
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 atcaagataaacaggatgaacatgatgattgataatcaattt 790


Score = 129 bits (65), Expect = 5e-30
Identities = 65/65 (100%)
Strand = Plus / Plus


Query: 83 tgttttataaatataatgcttgggatcccaagttaattataggacagattttatcaatac 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 tgttttataaatataatgcttgggatcccaagttaattataggacagattttatcaatac 142


Query: 143 aatgt 147
|||||
Sbjct: 143 aatgt 147


>Contig-U04444-1 (Contig-U04444-1Q) /CSM_Contig/Contig-U04444-1Q.Seq.d
Length = 595

Score = 36.2 bits (18), Expect = 0.061
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 773 atgattgataatcaattt 790
||||||||||||||||||
Sbjct: 506 atgattgataatcaattt 523


>Contig-U13625-1 (Contig-U13625-1Q) /CSM_Contig/Contig-U13625-1Q.Seq.d
Length = 1516

Score = 34.2 bits (17), Expect = 0.24
Identities = 17/17 (100%)
Strand = Plus / Minus


Query: 497 agttaatggatatacca 513
|||||||||||||||||
Sbjct: 877 agttaatggatatacca 861


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9588
Number of Sequences: 6905
Number of extensions: 9588
Number of successful extensions: 1147
Number of sequences better than 10.0: 129
length of query: 868
length of database: 5,674,871
effective HSP length: 16
effective length of query: 852
effective length of database: 5,564,391
effective search space: 4740861132
effective search space used: 4740861132
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7. 6
Homology vs DNA
Query= Contig-U04991-1 (Contig-U04991-1Q) /CSM_Contig/Contig-U04991-1Q.Seq.d
(868 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU037836) Dictyostelium discoideum slug cDNA, clone SSE354. 630 0.0 2
(ED466343) AUAC-aaf12a04.g1 Ascaris suum whole genome shotgu... 52 0.036 1
(AC201442) Strongylocentrotus purpuratus clone R3-3021P18, W... 42 0.096 3
(AC143303) Macaca mulatta clone CH250-270E14, *** SEQUENCING... 50 0.14 1
(FC820397) Sr_pAMT7_017j07_T7 S. ratti mixed stage pAMP Stro... 34 0.41 2
(CD524085) kw20h06.y1 Strongyloides ratti PA female naive pA... 34 0.42 2
(CU896585) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 0.50 3
(AL391873) Human DNA sequence from clone RP11-399N11 on chro... 48 0.57 1
(AC074023) Homo sapiens chromosome 13 clone RP11-544G18, WOR... 48 0.57 1
(AL359812) Human DNA sequence *** SEQUENCING CANCELLED *** f... 48 0.57 1
(FI111895) CMHD-GT_535E12-3 GTL_R1_UPA Mus musculus cDNA clo... 48 0.57 1
(AC118680) Mus musculus chromosome 8, clone RP24-381G7, comp... 40 0.82 5
(CZ161293) OR_ABa0002I20.r OR_ABa Oryza ridleyi genomic clon... 32 1.6 2
(AL390861) Human DNA sequence *** SEQUENCING CANCELLED *** f... 46 2.0 2
(EU686400) Ambystoma mexicanum clone BAC H3_1D2, complete se... 46 2.2 1
(AL929222) Zebrafish DNA sequence from clone DKEY-31N5. 46 2.2 1
(BV490869) S221P6280FH7.T0 Yvonne Pan troglodytes troglodyte... 46 2.2 1
(BV472592) G591P628196FC1.T0 Clint Pan troglodytes verus STS... 46 2.2 1
(BV461073) rbi59d01.g1 Clint Pan troglodytes verus STS genom... 46 2.2 1
(AC193036) Pan troglodytes BAC clone CH251-550E10 from chrom... 46 2.2 1
(AL139112) Human DNA sequence from clone GS1-103B18 on chrom... 46 2.2 1
(AC114321) Homo sapiens chromosome 5 clone RP11-710L15, comp... 46 2.2 1
(AC091609) Homo sapiens chromosome 1 clone RP11-109I2, compl... 46 2.2 1
(AC008499) Homo sapiens chromosome 5 clone CTC-438O3, comple... 46 2.2 1
(EU686411) Ambystoma mexicanum clone BAC H3_67L15, *** SEQUE... 46 2.2 1
(CT573470) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.2 1
(CT025722) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.2 1
(CR392022) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.2 1
(AL592210) Homo sapiens chromosome 1 *** SEQUENCING CANCELLE... 46 2.2 1
(AL356366) Human DNA sequence *** SEQUENCING CANCELLED *** f... 46 2.2 1
(AC221271) Bos taurus clone CH240-401L21, WORKING DRAFT SEQU... 46 2.2 1
(AC025745) Homo sapiens chromosome 5 clone RP11-710L15, WORK... 46 2.2 1
(AC016552) Homo sapiens chromosome 5 clone CTC-285M15, WORKI... 46 2.2 1
(FH211159) CHO_OF3230xn02r1.ab1 CHO_OF3 Nicotiana tabacum ge... 46 2.2 1
(EJ307517) 1095390107647 Global-Ocean-Sampling_GS-27-01-01-1... 46 2.2 1
(ED409309) AUAC-aah83h03.g1 Ascaris suum whole genome shotgu... 46 2.2 1
(BH646744) BOMOL11TF BO_2_3_KB Brassica oleracea genomic clo... 46 2.2 1
(BW995350) Cryptomeria japonica cDNA, clone: CM03700, 3' end... 46 2.2 1
(FG778096) G1147P317FM17.T0 Anolis carolinensis pooled norma... 46 2.2 1
(FG673665) G1143P310FI22.T0 Anolis carolinensis pooled norma... 46 2.2 1
(CC362890) PUHQV52TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 40 3.9 2
(CU467804) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 4.3 2
(CF358908) rl52b12.y1 Meloidogyne javanica J2 SMART pGEM Mel... 40 4.8 2
(CF350859) rl56c06.y1 Meloidogyne javanica J2 SMART pGEM Mel... 40 4.8 2
(CF358930) rl52e05.y1 Meloidogyne javanica J2 SMART pGEM Mel... 40 4.9 2
(AL954179) Zebrafish DNA sequence from clone DKEY-33I12. 42 5.1 3
(CT025874) Zebrafish DNA sequence from clone DKEY-170I22 in ... 42 5.9 3
(BZ389234) EINBR11TF EI_10_12_KB Entamoeba invadens genomic ... 36 6.7 2
(AC140969) Canis lupus familiaris clone RP81-197A18, WORKING... 36 8.5 5
(AC172412) Strongylocentrotus purpuratus clone R3-14G11, WOR... 42 8.7 4
(AC145068) Mus musculus chromosome 8, clone RP23-197G5, comp... 40 8.9 4
(CU570988) Zebrafish DNA sequence from clone CH73-45O6 in li... 44 8.9 1
(CU041363) Zebrafish DNA sequence from clone CH73-286N19 in ... 44 8.9 1
(CT009595) Zebrafish DNA sequence from clone DKEY-97K17 in l... 44 8.9 1
(CR936277) Zebrafish DNA sequence from clone DKEY-36I10 in l... 44 8.9 1
(CR855309) Zebrafish DNA sequence from clone DKEY-35B7 in li... 44 8.9 1
(CR589941) Zebrafish DNA sequence from clone DKEY-39C10 in l... 44 8.9 1
(BX470196) Zebrafish DNA sequence from clone CH211-157J23 in... 44 8.9 1
(BX470065) Zebrafish DNA sequence from clone DKEY-105H11 in ... 44 8.9 1
(BX323463) Zebrafish DNA sequence from clone DKEY-169J7 in l... 44 8.9 1
(BX004976) Zebrafish DNA sequence from clone CH211-276C7. 44 8.9 1
(AL807377) Zebrafish DNA sequence from clone CH211-229G3. 44 8.9 1
(CR974485) Mouse DNA sequence from clone RP23-112H14 on chro... 44 8.9 1
(AC155640) Mus musculus 10 BAC RP24-87H21 (Roswell Park Canc... 44 8.9 1
(AC154040) Mus musculus 10 BAC RP23-348E15 (Roswell Park Can... 44 8.9 1
(M68929) Marchantia polymorpha mitochondrion, complete genome. 44 8.9 1
(AC188653) Canis familiaris chromosome 20, clone XX-436O14, ... 44 8.9 1
(AE014296) Drosophila melanogaster chromosome 3L, complete s... 44 8.9 1
(AC113250) Drosophila melanogaster 3L BAC RP98-6P13 (Roswell... 44 8.9 1
(AC160596) Loxodonta africana clone VMRC15-11O14, WORKING DR... 44 8.9 1
(AC155676) Bos taurus clone CH240-40P17, WORKING DRAFT SEQUE... 44 8.9 1
(AC123164) Rattus norvegicus clone CH230-166O19, *** SEQUENC... 44 8.9 1
(AC114705) Rattus norvegicus clone CH230-66E17, WORKING DRAF... 44 8.9 1
(AC112278) Rattus norvegicus clone CH230-32C22, WORKING DRAF... 44 8.9 1
(AC094466) Rattus norvegicus clone CH230-4A7, WORKING DRAFT ... 44 8.9 1
(CU467650) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 8.9 1
(AC219360) Bos taurus clone CH240-338F13, WORKING DRAFT SEQU... 44 8.9 1
(AC185196) Felis catus clone RP86-86E21, WORKING DRAFT SEQUE... 44 8.9 1
(AC014426) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 8.9 1
(AC010050) Drosophila melanogaster chromosome 3L/71F1 clone ... 44 8.9 1
(BH303782) CH230-4A7.TV CHORI-230 Segment 1 Rattus norvegicu... 44 8.9 1
(EK415246) 1095506310030 Global-Ocean-Sampling_GS-31-01-01-1... 44 8.9 1
(EK243899) 1095460245316 Global-Ocean-Sampling_GS-31-01-01-1... 44 8.9 1
(EK233145) 1095460189280 Global-Ocean-Sampling_GS-31-01-01-1... 44 8.9 1
(EK193509) 1095460028953 Global-Ocean-Sampling_GS-31-01-01-1... 44 8.9 1
(EI668703) TAACSP3AShA_0020M01F TAACSP3AShA Triticum aestivu... 44 8.9 1
(DU901442) 423810 Tomato HindIII BAC Library Solanum lycoper... 44 8.9 1
(DU888326) 389947 Tomato HindIII BAC Library Solanum lycoper... 44 8.9 1
(AL002047) F.rubripes GSS sequence, clone 045G19aC12. 44 8.9 1
(CZ980341) 190239 Tomato MboI BAC Library Solanum lycopersic... 44 8.9 1
(CU115622) Equus caballus GSS, BAC clone CH241-227M2, SP6 en... 44 8.9 1
(BZ094331) CH230-141M19.TJC CHORI-230 Segment 1 Rattus norve... 44 8.9 1
(BX180861) Danio rerio genomic clone DKEY-178A4, genomic sur... 44 8.9 1
(EL488481) CHUS3709.b1_I16.ab1 CHU(LMS) puzzle sunflower Hel... 44 8.9 1
(EL430070) CHCM9206.b1_L22.ab1 CHC(LMS) Texas blueweed Helia... 44 8.9 1
(EB575844) AGENCOURT_51774468 D. ananassae EST Drosophila an... 44 8.9 1
(DY808917) CTOX17333.b1_I13.ab1 CTO(XYZ) dandelion Taraxacum... 44 8.9 1
(DN080889) JGI_CABD12713.rev NIH_XGC_tropLun1 Xenopus (Silur... 44 8.9 1
(CV625645) L_AJ-aaa22g11.g1 Hc6AR_M Ajellomyces capsulatus c... 44 8.9 1
(FM962040) Glossina morsitans morsitans EST, clone GMsg32b03... 44 8.9 1
(EV252836) EST_cclu_evb_470026 ccluevb mixed_tissue Coregonu... 44 8.9 1
(EV252835) EST_cclu_evb_469642 ccluevb mixed_tissue Coregonu... 44 8.9 1
(CP000743) Methanococcus aeolicus Nankai-3, complete genome. 44 8.9 1

>(AU037836) Dictyostelium discoideum slug cDNA, clone SSE354.
Length = 594

Score = 630 bits (318), Expect(2) = 0.0
Identities = 318/318 (100%)
Strand = Plus / Plus


Query: 276 gactgcttttttaattaattcattatttggttcattttgtttaaaatatatagtggaacg 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gactgcttttttaattaattcattatttggttcattttgtttaaaatatatagtggaacg 60


Query: 336 atcaaagaaatgtttagatcattcagctacagttacatttatacattttattatagtttg 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atcaaagaaatgtttagatcattcagctacagttacatttatacattttattatagtttg 120


Query: 396 gattgtttcaggattcccaaagacagtagtttggtgggcaattcaattgattggtatggt 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gattgtttcaggattcccaaagacagtagtttggtgggcaattcaattgattggtatggt 180


Query: 456 tataatggcaatgattggtgaatatttatgtatgcgtaaagagttaatggatataccatt 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tataatggcaatgattggtgaatatttatgtatgcgtaaagagttaatggatataccatt 240


Query: 516 acaaagaggaaaagatttagattcaactccaatcacaattccaccatcacctcatacttc 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acaaagaggaaaagatttagattcaactccaatcacaattccaccatcacctcatacttc 300


Query: 576 atcaccaattatgaatcc 593
||||||||||||||||||
Sbjct: 301 atcaccaattatgaatcc 318

Score = 157 bits (79), Expect(2) = 0.0
Identities = 79/79 (100%)
Strand = Plus / Plus


Query: 712 aatccctaccaaccaatcgaattggagattttaacacatcaagataaacaggatgaacat 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aatccctaccaaccaatcgaattggagattttaacacatcaagataaacaggatgaacat 496


Query: 772 gatgattgataatcaattt 790
|||||||||||||||||||
Sbjct: 497 gatgattgataatcaattt 515

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 737,701,279
Number of extensions: 46524919
Number of successful extensions: 4204144
Number of sequences better than 10.0: 104
Length of query: 868
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 844
Effective length of database: 99,340,224,878
Effective search space: 83843149797032
Effective search space used: 83843149797032
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.31
Homology vs Protein
Query= Contig-U04991-1 (Contig-U04991-1Q) /CSM_Contig/Contig-U04991-1Q.Seq.d
(868 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q55E69) RecName: Full=Protein SYS1 homolog; 267 4e-70
AK069058_1(AK069058|pid:none) Oryza sativa Japonica Group cDNA c... 115 3e-24
AP008207_1730(AP008207|pid:none) Oryza sativa (japonica cultivar... 115 3e-24
(A7S6Y0) RecName: Full=Protein SYS1 homolog; 114 4e-24
BT039143_1(BT039143|pid:none) Zea mays full-length cDNA clone ZM... 112 2e-23
EU967493_1(EU967493|pid:none) Zea mays clone 303680 protein SYS1... 110 5e-23
AC011717_5(AC011717|pid:none) Arabidopsis thaliana chromosome 1 ... 110 8e-23
AC009322_6(AC009322|pid:none) Arabidopsis thaliana chromosome I ... 110 8e-23
BT059733_1(BT059733|pid:none) Salmo salar clone ssal-rgf-520-359... 102 2e-20
BC041757_1(BC041757|pid:none) Xenopus laevis similar to chromoso... 102 2e-20
(Q78S06) RecName: Full=Protein SYS1 homolog; &AK003071_1(AK0030... 101 3e-20
AK005510_1(AK005510|pid:none) Mus musculus adult female placenta... 101 4e-20
AL591714_1(AL591714|pid:none) Novel human gene mapping to chomos... 101 4e-20
(A4K2N5) RecName: Full=Protein SYS1 homolog; &(A4K2W1) RecName:... 101 4e-20
BT074073_1(BT074073|pid:none) Oncorhynchus mykiss clone omyk-evo... 100 5e-20
DQ443344_1(DQ443344|pid:none) Bombyx mori SCF apoptosis response... 100 8e-20
BT073382_1(BT073382|pid:none) Oncorhynchus mykiss clone omyk-evn... 100 1e-19
DQ213130_1(DQ213130|pid:none) Taeniopygia guttata clone 0058P002... 100 1e-19
(Q1RMQ3) RecName: Full=Protein SYS1 homolog; &BC114777_1(BC1147... 98 3e-19
FN357383_23(FN357383|pid:none) Schistosoma mansoni genome sequen... 95 4e-18
CP001142_304(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1... 94 5e-18
BC049317_1(BC049317|pid:none) Danio rerio zgc:56445, mRNA (cDNA ... 90 1e-16
BT035755_1(BT035755|pid:none) Zea mays full-length cDNA clone ZM... 84 8e-15
AK341536_1(AK341536|pid:none) Acyrthosiphon pisum ACYPI002681 mR... 81 4e-14
AL021578_9(AL021578|pid:none) Human DNA sequence from clone RP3-... 59 2e-07
CR382135_761(CR382135|pid:none) Debaryomyces hansenii strain CBS... 59 3e-07
FM992694_398(FM992694|pid:none) Candida dubliniensis CD36 chromo... 58 4e-07
FN392321_758(FN392321|pid:none) Pichia pastoris GS115 chromosome... 58 5e-07
AP006852_402(AP006852|pid:none) Candida albicans genomic DNA, ch... 57 6e-07
CR382126_679(CR382126|pid:none) Kluyveromyces lactis strain NRRL... 55 2e-06
AM920427_1574(AM920427|pid:none) Penicillium chrysogenum Wiscons... 52 3e-05
CU928166_129(CU928166|pid:none) Kluyveromyces thermotolerans str... 52 3e-05
CR380950_136(CR380950|pid:none) Candida glabrata strain CBS138 c... 51 4e-05
AL021578_10(AL021578|pid:none) Human DNA sequence from clone RP3... 50 1e-04
X03449_2(X03449|pid:none) Yeast DCD35 gene region for adenylate ... 50 1e-04
AP007151_1082(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 48 5e-04
AE016814_24(AE016814|pid:none) Ashbya gossypii (= Eremothecium g... 45 0.002
CU928174_436(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 45 0.004
CU633865_216(CU633865|pid:none) Podospora anserina genomic DNA c... 43 0.016
AM494966_172(AM494966|pid:none) Leishmania braziliensis chromoso... 42 0.021
AM502247_192(AM502247|pid:none) Leishmania infantum chromosome 29. 40 0.10
CP001089_683(CP001089|pid:none) Geobacter lovleyi SZ, complete g... 34 5.6

>(Q55E69) RecName: Full=Protein SYS1 homolog;
Length = 232

Score = 267 bits (682), Expect = 4e-70
Identities = 143/222 (64%), Positives = 144/222 (64%)
Frame = +1

Query: 82 MFYKYNAWDPKLIIGQILSIQCXXXXXXXXXXXXXXXXXXXXXXXEQMFEYQSINTHSQS 261
MFYKYNAWDPKLIIGQILSIQC EQMFEYQSINTHSQS
Sbjct: 1 MFYKYNAWDPKLIIGQILSIQCLYYILLAGILYLLDSMFSSSLSLEQMFEYQSINTHSQS 60

Query: 262 GKVVMTAFLINSLFGSFCLKYIVERSKKCLDHSATVTFIHFIIVWIVSGFPKTVVWWAIQ 441
G+VVMTAFLINSLFGSFCLKYIVERSKKCLDHSATVTFIHFIIVWIVSGFPKTVVWWAIQ
Sbjct: 61 GRVVMTAFLINSLFGSFCLKYIVERSKKCLDHSATVTFIHFIIVWIVSGFPKTVVWWAIQ 120

Query: 442 LIGMVIMAMIGEYLCMRKELMDIPLQRGKDLDXXXXXXXXXXXXXXXXMNPKXXXXXXXX 621
LIGMVIMAMIGEYLCMRKELMDIPLQRGKDLD MNPK
Sbjct: 121 LIGMVIMAMIGEYLCMRKELMDIPLQRGKDLDSTPITIPPSPHTSSPIMNPKNNSNGNSG 180

Query: 622 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPYQPIELEILT 747
PYQPIELEILT
Sbjct: 181 SNNNNNNIFSNSINSSGGSSSSINSIGNSNNPYQPIELEILT 222

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 895,212,920
Number of extensions: 13566362
Number of successful extensions: 28432
Number of sequences better than 10.0: 42
Number of HSP's gapped: 28390
Number of HSP's successfully gapped: 43
Length of query: 289
Length of database: 1,061,185,681
Length adjustment: 127
Effective length of query: 162
Effective length of database: 646,092,785
Effective search space: 104667031170
Effective search space used: 104667031170
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.57 gvh: 0.61 alm: 0.25 top: 0.07 tms: 0.27 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

44.0 %: endoplasmic reticulum
16.0 %: mitochondrial
16.0 %: plasma membrane
8.0 %: nuclear
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for Contig-U04991-1 is end

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0