NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04971-1
Contig ID Contig-U04971-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04971-1 (Contig-U04971-1Q) /CSM_Contig/Contig-U04971-1Q.Seq.d
ATTTTTTTTATTATAAAATATACATATTTAGAAAATAATAATAATAATAA
TAACAATCTACAACAAATTAAAATAATAATAATAATAATAAAAAATGGAT
ATTGACGAACAAATTATTCAAGATTATTCAAATTCAAAATTAGATGTCGT
TCAAATTGATGGTTTAGTTGTATTAAAAATCATTAAACAATGTAAAGAAT
ATTTACCAGAATTAGTTCCAGGTCAATTATTAGGTTTAGATATTGGTACA
AGTTTAGAAGTTTCCAATTGTTTCCCATTCCCACCACGTGATCAAGAAGA
TGAAAATAGTGAATCAATTGCAGATTATCAATTAGAGATGATGAGATTTT
TACGTGAAGTCAATATCGATTCCAACACTGTCGGTTGGTATACACCAACT
TATCTCAATTCATTCTTTAATGAATCTGTCATTGAAACTCAATATAACTA
TCAAGCAACCATCAATCAAAAATGTGTTGTAATTGTTTATGATCCAATTA
AAACTTCACAAGGTACACTCTCCTTAAAATGTTATCGTTTAACTCAATCT
TTTATGGAATTATTTAAAGATCAATCTTTTTCAAGAGAAAGATTAGATCA
AGCAAATTTAAGTTTTAATGATATTTTTGAACAAATTCCAATTAAAATTC
ATAATTCACAATTAATTAATGCACTTTTATATGAATTTGATGGTGCTTCA
AATAATTTGACAAATAGTTTCGATAGATTAAACATTAGCAATAATATTTA
TTTAGAAAAAGTCGTTGAAGGTATGACCGATTGTCTCGAATCATTGAATC
AAGAATTGAATAAAGTTTATATCAATCAAAGAAATATTCAAACTCAAAAG
ACTAACTACATTCAACAAAAGTTTTTAGAAGGTCAAAAAGTAGATGAAGA
TGAACTTGCCTCCATGATCAAACCACTCAATCCACCTTCAAAATTAACTT
CCCTCTTACTCACTAATCAAATCAATAACTATACCGATCAAATTCACTCT
TTCAGTGGAAATAGTCTCACTAAATTAAGTTTATTAAAAGATTTACAAAA
ATAAATTTTTTAAAAAAAATAAATTAAAAAAAATAATAAAATA
Gap no gap
Contig length 1093
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4095433
End point 4096465
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U04971
List of clone(s) 

est1=SSE249E,1,1094
est2=SSH656F,287,628
est3=SSH656Z,851,1094
Translated Amino Acid sequence 
ffll*nihi*kiiiiiitiynklk******KMDIDEQIIQDYSNSKLDVVQIDGLVVLKI
IKQCKEYLPELVPGQLLGLDIGTSLEVSNCFPFPPRDQEDENSESIADYQLEMMRFLREV
NIDSNTVGWYTPTYLNSFFNESVIETQYNYQATINQKCVVIVYDPIKTSQGTLSLKCYRL
TQSFMELFKDQSFSRERLDQANLSFNDIFEQIPIKIHNSQLINALLYEFDGASNNLTNSF
DRLNISNNIYLEKVVEGMTDCLESLNQELNKVYINQRNIQTQKTNYIQQKFLEGQKVDED
ELASMIKPLNPPSKLTSLLLTNQINNYTDQIHSFSGNSLTKLSLLKDLQK*if*kk*ikk
nnki
Translated Amino Acid sequence (All Frames) 
Frame A:
iffiikytylennnnnnnnlqqikiiiiiikngy*rtnysrlfkfkircrsn*wfscikn
h*tm*riftrissrsiirfrywykfrsfqlfpiptt*srr*k**incrlsirddeift*s
qyrfqhcrlvytnlsqfil**ich*nsi*lssnhqskmccncl*sn*nftrytllkmlsf
nsifygii*rsiffkrkirsskfkf**yf*tnsn*ns*ftin*ctfi*i*wcfk*fdk*f
r*ikh*q*ylfrksr*rydrlsriiesrie*slyqskkysnskd*lhstkvfrrsksr*r
*tclhdqttqstfkinfplth*snq*lyrsnslfqwk*sh*ikfikrftkinflkkin*k
k**n


Frame B:
ffll*nihi*kiiiiiitiynklk******KMDIDEQIIQDYSNSKLDVVQIDGLVVLKI
IKQCKEYLPELVPGQLLGLDIGTSLEVSNCFPFPPRDQEDENSESIADYQLEMMRFLREV
NIDSNTVGWYTPTYLNSFFNESVIETQYNYQATINQKCVVIVYDPIKTSQGTLSLKCYRL
TQSFMELFKDQSFSRERLDQANLSFNDIFEQIPIKIHNSQLINALLYEFDGASNNLTNSF
DRLNISNNIYLEKVVEGMTDCLESLNQELNKVYINQRNIQTQKTNYIQQKFLEGQKVDED
ELASMIKPLNPPSKLTSLLLTNQINNYTDQIHSFSGNSLTKLSLLKDLQK*if*kk*ikk
nnki


Frame C:
ffyykiyifrk******qsttn*nnnnnnkkwiltnklfkiiqiqn*msfklmv*ly*ks
lnnvkniyqn*fqvny*v*ilvqv*kfpivshshhvikkmkivnqlqiin*r**dfyvks
isiptlsvgihqlisihslmnlslklnitikqpsiknvl*lfmiqlklhkvhsp*nviv*
lnllwnylkinlfqekd*ikqi*vlmiflnkfqlkfiihn*lmhfymnlmvlqii*qivs
id*tlaiifi*kkslkv*pivsnh*ikn*ikfisikeifklkrlttfnksf*kvkk*mkm
nlpp*snhsihlqn*lpsysliksitipikftlsveivsln*vy*kiyknkffkknklkk
iik
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04971-1 (Contig-U04971-1Q)
/CSM_Contig/Contig-U04971-1Q.Seq.d
         (1093 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04971-1 (Contig-U04971-1Q) /CSM_Contig/Conti...  1893  0.0
Contig-U01402-1 (Contig-U01402-1Q) /CSM_Contig/Conti...    44  3e-04
Contig-U12426-1 (Contig-U12426-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U09112-1 (Contig-U09112-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U12455-1 (Contig-U12455-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U11390-1 (Contig-U11390-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U10831-1 (Contig-U10831-1Q) /CSM_Contig/Conti...    38  0.020
Contig-U12585-1 (Contig-U12585-1Q) /CSM_Contig/Conti...    36  0.077
Contig-U11946-1 (Contig-U11946-1Q) /CSM_Contig/Conti...    36  0.077
Contig-U11355-1 (Contig-U11355-1Q) /CSM_Contig/Conti...    36  0.077

>Contig-U04971-1 (Contig-U04971-1Q) /CSM_Contig/Contig-U04971-1Q.Seq.d
          Length = 1093

 Score = 1893 bits (955), Expect = 0.0
 Identities = 955/955 (100%)
 Strand = Plus / Plus

                                                                        
Query: 92   aaaatggatattgacgaacaaattattcaagattattcaaattcaaaattagatgtcgtt 151
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92   aaaatggatattgacgaacaaattattcaagattattcaaattcaaaattagatgtcgtt 151

                                                                        
Query: 152  caaattgatggtttagttgtattaaaaatcattaaacaatgtaaagaatatttaccagaa 211
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152  caaattgatggtttagttgtattaaaaatcattaaacaatgtaaagaatatttaccagaa 211

                                                                        
Query: 212  ttagttccaggtcaattattaggtttagatattggtacaagtttagaagtttccaattgt 271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212  ttagttccaggtcaattattaggtttagatattggtacaagtttagaagtttccaattgt 271

                                                                        
Query: 272  ttcccattcccaccacgtgatcaagaagatgaaaatagtgaatcaattgcagattatcaa 331
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272  ttcccattcccaccacgtgatcaagaagatgaaaatagtgaatcaattgcagattatcaa 331

                                                                        
Query: 332  ttagagatgatgagatttttacgtgaagtcaatatcgattccaacactgtcggttggtat 391
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332  ttagagatgatgagatttttacgtgaagtcaatatcgattccaacactgtcggttggtat 391

                                                                        
Query: 392  acaccaacttatctcaattcattctttaatgaatctgtcattgaaactcaatataactat 451
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392  acaccaacttatctcaattcattctttaatgaatctgtcattgaaactcaatataactat 451

                                                                        
Query: 452  caagcaaccatcaatcaaaaatgtgttgtaattgtttatgatccaattaaaacttcacaa 511
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452  caagcaaccatcaatcaaaaatgtgttgtaattgtttatgatccaattaaaacttcacaa 511

                                                                        
Query: 512  ggtacactctccttaaaatgttatcgtttaactcaatcttttatggaattatttaaagat 571
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512  ggtacactctccttaaaatgttatcgtttaactcaatcttttatggaattatttaaagat 571

                                                                        
Query: 572  caatctttttcaagagaaagattagatcaagcaaatttaagttttaatgatatttttgaa 631
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572  caatctttttcaagagaaagattagatcaagcaaatttaagttttaatgatatttttgaa 631

                                                                        
Query: 632  caaattccaattaaaattcataattcacaattaattaatgcacttttatatgaatttgat 691
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632  caaattccaattaaaattcataattcacaattaattaatgcacttttatatgaatttgat 691

                                                                        
Query: 692  ggtgcttcaaataatttgacaaatagtttcgatagattaaacattagcaataatatttat 751
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692  ggtgcttcaaataatttgacaaatagtttcgatagattaaacattagcaataatatttat 751

                                                                        
Query: 752  ttagaaaaagtcgttgaaggtatgaccgattgtctcgaatcattgaatcaagaattgaat 811
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752  ttagaaaaagtcgttgaaggtatgaccgattgtctcgaatcattgaatcaagaattgaat 811

                                                                        
Query: 812  aaagtttatatcaatcaaagaaatattcaaactcaaaagactaactacattcaacaaaag 871
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812  aaagtttatatcaatcaaagaaatattcaaactcaaaagactaactacattcaacaaaag 871

                                                                        
Query: 872  tttttagaaggtcaaaaagtagatgaagatgaacttgcctccatgatcaaaccactcaat 931
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872  tttttagaaggtcaaaaagtagatgaagatgaacttgcctccatgatcaaaccactcaat 931

                                                                        
Query: 932  ccaccttcaaaattaacttccctcttactcactaatcaaatcaataactataccgatcaa 991
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932  ccaccttcaaaattaacttccctcttactcactaatcaaatcaataactataccgatcaa 991

                                                                   
Query: 992  attcactctttcagtggaaatagtctcactaaattaagtttattaaaagatttac 1046
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992  attcactctttcagtggaaatagtctcactaaattaagtttattaaaagatttac 1046


 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 10 attataaaatatacatatttagaa 33
          ||||||||||||||||||||||||
Sbjct: 10 attataaaatatacatatttagaa 33


>Contig-U01402-1 (Contig-U01402-1Q) /CSM_Contig/Contig-U01402-1Q.Seq.d
          Length = 1322

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 126 attcaaattcaaaattagatgt 147
           ||||||||||||||||||||||
Sbjct: 955 attcaaattcaaaattagatgt 934


>Contig-U12426-1 (Contig-U12426-1Q) /CSM_Contig/Contig-U12426-1Q.Seq.d
          Length = 1761

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 583  aagagaaagattagatcaag 602
            ||||||||||||||||||||
Sbjct: 1618 aagagaaagattagatcaag 1637


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,848
Number of Sequences: 6905
Number of extensions: 16848
Number of successful extensions: 1951
Number of sequences better than 10.0: 221
length of query: 1093
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1077
effective length of database: 5,564,391
effective search space: 5992849107
effective search space used: 5992849107
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7. 6
Homology vs DNA 
Query= Contig-U04971-1 (Contig-U04971-1Q) /CSM_Contig/Contig-U04971-1Q.Seq.d
         (1093 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AY484460) Dictyostelium discoideum kinesin family member 3 ...   973   0.0    2
(AU037750) Dictyostelium discoideum slug cDNA, clone SSE249.      856   0.0    2
(AU073608) Dictyostelium discoideum slug cDNA, clone SSH656.      476   e-130  1
(AU038393) Dictyostelium discoideum slug cDNA, clone SSH656.      337   5e-88  1
(AU072346) Dictyostelium discoideum slug cDNA, clone SSE249.      285   2e-72  1
(AC231357) Medicago truncatula clone mth2-71j11, WORKING DRA...    44   0.001  3
(CN807547) HDAH10E11.F Leech Haementeria depressa library HD...    46   0.027  2
(Z99281) Caenorhabditis elegans YAC Y57G11C.                       40   0.22   9
(AC106428) Rattus norvegicus clone CH230-147O12, WORKING DRA...    34   0.39   2
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    32   0.51   11
(AC203376) Zea mays chromosome 1 clone CH201-480C20; ZMMBBc0...    48   0.72   1
(AC020966) Mus musculus clone RP21-95D23, WORKING DRAFT SEQU...    48   0.72   1
(AC145023) Medicago truncatula chromosome 6 clone mth2-30j24...    44   0.78   3
(DT801813) 127306985 TL1 Tribolium castaneum cDNA clone 122M...    36   0.79   2
(DD119626) STAPHYLOCOCCUS AUREUS PROTEINS AND NUCLEIC ACIDS.       44   1.2    2
(CS708025) Sequence 565 from Patent EP1829892.                     44   1.2    2
(AX617602) Sequence 565 from Patent WO02094868.                    44   1.2    2
(BH790917) SALK_058163.41.55.x Arabidopsis thaliana TDNA ins...    38   1.2    2
(CR940352) Theileria annulata genomic DNA chromosome 3.            34   1.7    18
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    34   1.8    15
(DW085238) CLPX8294.b1_K10.ab1 CLP(XYZ) lettuce perennis Lac...    32   1.9    2
(DW088290) CLPY12121.b1_A08.ab1 CLP(XYZ) lettuce perennis La...    32   1.9    2
(AM848176) Nicotiana tabacum EST, clone nt005159081.               34   2.0    2
(CR855983) Paramecium tetraurelia macronuclear, putative gen...    44   2.2    2
(CU137662) Medicago truncatula chromosome 5 clone mth2-155l8...    36   2.3    6
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         36   2.8    10
(AL671732) Mouse DNA sequence from clone RP23-309O6 on chrom...    46   2.8    1
(AC169520) Mus musculus BAC clone RP23-35C6 from chromosome ...    46   2.8    1
(AC117651) Mus musculus chromosome 3, clone RP23-287I17, com...    46   2.8    1
(AC117253) Mus musculus BAC clone RP24-405A12 from chromosom...    46   2.8    1
(AC107692) Mus musculus chromosome 3, clone RP24-387H23, com...    46   2.8    1
(CT963105) Medicago truncatula chromosome 5 clone mte1-71h1,...    46   2.8    1
(AC198009) Medicago truncatula chromosome 7 BAC clone mth2-9...    46   2.8    1
(AC153109) Loxodonta africana clone VMRC15-44L4, WORKING DRA...    46   2.8    1
(AC149993) Strongylocentrotus purpuratus clone R3-60G1, WORK...    46   2.8    1
(CU694729) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.8    1
(CU466502) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.8    1
(AC180362) Strongylocentrotus purpuratus clone R3-3115B14, W...    46   2.8    1
(AC177482) Strongylocentrotus purpuratus clone R3-61I12, WOR...    46   2.8    1
(FH715956) CHO_OF5050xj13f1.ab1 CHO_OF5 Nicotiana tabacum ge...    46   2.8    1
(ET896890) CHO_OF148xi06r2.ab1 CHO_OF Nicotiana tabacum geno...    46   2.8    1
(EK586975) 1095522116872 Global-Ocean-Sampling_GS-32-01-01-1...    46   2.8    1
(EK163679) 1095458042256 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.8    1
(CT041483) Sus scrofa genomic clone CH242-3L23, genomic surv...    46   2.8    1
(CR486043) mth2-155C4FM2 BAC end, cultivar Jemalong A17 of M...    46   2.8    1
(CL330299) CH242_3L23.r CHORI-242 Sus scrofa genomic clone C...    46   2.8    1
(CG935122) MBEKH06TFB mth2 Medicago truncatula genomic clone...    46   2.8    1
(DB976268) Glycine max cDNA, clone: GMFL02-08-C20, 3'end.          46   2.8    1
(CV758288) sjl9-007_D03_sjl9-007D03-T3_027.ab1 SJL Schistoso...    46   2.8    1
(CP000685) Flavobacterium johnsoniae UW101, complete genome.       46   2.8    1
(AF275345) Lycopersicon esculentum putative permease gene, p...    32   3.2    9
(AL807390) Mouse DNA sequence from clone RP23-223F2 on chrom...    40   3.4    5
(AC202590) Medicago truncatula clone mth2-50e13, WORKING DRA...    34   3.4    4
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    34   3.8    19
(AC180055) Strongylocentrotus purpuratus clone R3-3030C19, W...    32   5.5    2
(AC176968) Strongylocentrotus purpuratus clone R3-34N08, WOR...    36   6.0    5
(AP010932) Solanum lycopersicum DNA, chromosome 8, clone: C0...    42   6.4    3
(AC162869) Mus musculus chromosome 1, clone RP24-309N24, com...    32   6.4    7
(AC006281) Plasmodium falciparum chromosome 12 clone PFYACB8...    34   6.8    8
(DQ826226) Minuartia cumberlandensis psbE-petL intergenic sp...    34   7.1    2
(DQ826227) Minuartia glabra psbE-petL intergenic spacer, par...    34   7.1    2
(DD194611) Method and nucleic acids for the analysis of a co...    44   7.2    4
(DD194609) Method and nucleic acids for the analysis of a co...    44   7.2    4
(AX825171) Sequence 5 from Patent WO03072812.                      44   7.2    4
(AX825169) Sequence 3 from Patent WO03072812.                      44   7.2    4
(AC198005) Medicago truncatula chromosome 7 BAC clone mth2-1...    36   7.8    5
(AC177779) Strongylocentrotus purpuratus clone R3-1002J23, W...    40   8.9    4
(FH069386) CHO_OF3662xg09r1.ab1 CHO_OF3 Nicotiana tabacum ge...    36   8.9    2
(CP001047) Mycoplasma arthritidis 158L3-1, complete genome.        32   9.3    17
(AY082070) Bacteriophage phi3626, complete genome.                 44   9.5    4

>(AY484460) Dictyostelium discoideum kinesin family member 3 gene,
           complete cds.
          Length = 7895

 Score =  973 bits (491), Expect(2) = 0.0
 Identities = 494/495 (99%)
 Strand = Plus / Plus


Query: 97  ggatattgacgaacaaattattcaagattattcaaattcaaaattagatgtcgttcaaat 156
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 161 ggatattgacgaacaaattattcaagattattcaaattcaaaattaaatgtcgttcaaat 220


Query: 157 tgatggtttagttgtattaaaaatcattaaacaatgtaaagaatatttaccagaattagt 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 tgatggtttagttgtattaaaaatcattaaacaatgtaaagaatatttaccagaattagt 280


Query: 217 tccaggtcaattattaggtttagatattggtacaagtttagaagtttccaattgtttccc 276
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tccaggtcaattattaggtttagatattggtacaagtttagaagtttccaattgtttccc 340


Query: 277 attcccaccacgtgatcaagaagatgaaaatagtgaatcaattgcagattatcaattaga 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 attcccaccacgtgatcaagaagatgaaaatagtgaatcaattgcagattatcaattaga 400


Query: 337 gatgatgagatttttacgtgaagtcaatatcgattccaacactgtcggttggtatacacc 396
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gatgatgagatttttacgtgaagtcaatatcgattccaacactgtcggttggtatacacc 460


Query: 397 aacttatctcaattcattctttaatgaatctgtcattgaaactcaatataactatcaagc 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 aacttatctcaattcattctttaatgaatctgtcattgaaactcaatataactatcaagc 520


Query: 457 aaccatcaatcaaaaatgtgttgtaattgtttatgatccaattaaaacttcacaaggtac 516
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aaccatcaatcaaaaatgtgttgtaattgtttatgatccaattaaaacttcacaaggtac 580


Query: 517 actctccttaaaatgttatcgtttaactcaatcttttatggaattatttaaagatcaatc 576
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 actctccttaaaatgttatcgtttaactcaatcttttatggaattatttaaagatcaatc 640


Query: 577 tttttcaagagaaag 591
           |||||||||||||||
Sbjct: 641 tttttcaagagaaag 655

 Score =  854 bits (431), Expect(2) = 0.0
 Identities = 431/431 (100%)
 Strand = Plus / Plus


Query: 590  agattagatcaagcaaatttaagttttaatgatatttttgaacaaattccaattaaaatt 649
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752  agattagatcaagcaaatttaagttttaatgatatttttgaacaaattccaattaaaatt 811


Query: 650  cataattcacaattaattaatgcacttttatatgaatttgatggtgcttcaaataatttg 709
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812  cataattcacaattaattaatgcacttttatatgaatttgatggtgcttcaaataatttg 871


Query: 710  acaaatagtttcgatagattaaacattagcaataatatttatttagaaaaagtcgttgaa 769
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872  acaaatagtttcgatagattaaacattagcaataatatttatttagaaaaagtcgttgaa 931


Query: 770  ggtatgaccgattgtctcgaatcattgaatcaagaattgaataaagtttatatcaatcaa 829
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932  ggtatgaccgattgtctcgaatcattgaatcaagaattgaataaagtttatatcaatcaa 991


Query: 830  agaaatattcaaactcaaaagactaactacattcaacaaaagtttttagaaggtcaaaaa 889
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992  agaaatattcaaactcaaaagactaactacattcaacaaaagtttttagaaggtcaaaaa 1051


Query: 890  gtagatgaagatgaacttgcctccatgatcaaaccactcaatccaccttcaaaattaact 949
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1052 gtagatgaagatgaacttgcctccatgatcaaaccactcaatccaccttcaaaattaact 1111


Query: 950  tccctcttactcactaatcaaatcaataactataccgatcaaattcactctttcagtgga 1009
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1112 tccctcttactcactaatcaaatcaataactataccgatcaaattcactctttcagtgga 1171


Query: 1010 aatagtctcac 1020
            |||||||||||
Sbjct: 1172 aatagtctcac 1182

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,265,378,704
Number of extensions: 76866675
Number of successful extensions: 6312247
Number of sequences better than 10.0: 72
Length of query: 1093
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1069
Effective length of database: 99,340,224,878
Effective search space: 106194700394582
Effective search space used: 106194700394582
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U04971-1 (Contig-U04971-1Q) /CSM_Contig/Contig-U04971-1Q.Seq.d
         (1093 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UD0) RecName: Full=Eukaryotic translation initiation factor ...   635   e-180
EF086120_1(EF086120|pid:none) Picea sitchensis clone WS0283_P08 ...   275   2e-72
AC146632_35(AC146632|pid:none) Medicago truncatula clone mth2-57...   274   5e-72
AK103713_1(AK103713|pid:none) Oryza sativa Japonica Group cDNA c...   265   3e-69
(Q9C5Z2) RecName: Full=Eukaryotic translation initiation factor ...   259   9e-68
AF285833_1(AF285833|pid:none) Arabidopsis thaliana eukaryotic in...   259   1e-67
(A7SA47) RecName: Full=Eukaryotic translation initiation factor ...   253   8e-66
BT074543_1(BT074543|pid:none) Osmerus mordax clone omor-eva-512-...   238   4e-61
BT083170_1(BT083170|pid:none) Anoplopoma fimbria clone afim-evh-...   235   2e-60
(B5RI54) RecName: Full=Eukaryotic translation initiation factor ...   231   3e-59
AF092576_1(AF092576|pid:none) Homo sapiens translation initiatio...   230   8e-59
(Q5ZLE6) RecName: Full=Eukaryotic translation initiation factor ...   228   4e-58
AB170558_1(AB170558|pid:none) Macaca fascicularis brain cDNA clo...   228   4e-58
AK222520_1(AK222520|pid:none) Homo sapiens mRNA for eukaryotic t...   227   5e-58
AK222620_1(AK222620|pid:none) Homo sapiens mRNA for eukaryotic t...   227   6e-58
(B5FY35) RecName: Full=Eukaryotic translation initiation factor ...   226   8e-58
CP001326_200(CP001326|pid:none) Micromonas sp. RCC299 chromosome...   226   1e-57
BC129759_1(BC129759|pid:none) Xenopus laevis hypothetical protei...   226   1e-57
BC086809_1(BC086809|pid:none) Danio rerio zgc:123049, mRNA (cDNA...   224   4e-57
BC090880_1(BC090880|pid:none) Homo sapiens eukaryotic translatio...   221   3e-56
AM920431_559(AM920431|pid:none) Penicillium chrysogenum Wisconsi...   202   2e-50
CP000593_281(CP000593|pid:none) Ostreococcus lucimarinus CCE9901...   195   3e-48
(Q0D1J4) RecName: Full=Eukaryotic translation initiation factor ...   194   6e-48
(Q2U2J1) RecName: Full=Eukaryotic translation initiation factor ...   193   8e-48
(Q5BDW0) RecName: Full=Eukaryotic translation initiation factor ...   192   2e-47
(A2QQA2) RecName: Full=Eukaryotic translation initiation factor ...   190   9e-47
BT064367_1(BT064367|pid:none) Zea mays full-length cDNA clone ZM...   178   3e-43
(Q170C2) RecName: Full=Eukaryotic translation initiation factor ...   176   2e-42
(A7E7B3) RecName: Full=Eukaryotic translation initiation factor ...   174   5e-42
(Q7PVR3) RecName: Full=Eukaryotic translation initiation factor ...   174   5e-42
BT077405_1(BT077405|pid:none) Lepeophtheirus salmonis Pacific fo...   174   6e-42
(A6RQZ9) RecName: Full=Eukaryotic translation initiation factor ...   174   6e-42
CU633448_204(CU633448|pid:none) Podospora anserina genomic DNA c...   172   2e-41
AB171039_1(AB171039|pid:none) Macaca fascicularis brain cDNA clo...   171   3e-41
(B4I1C2) RecName: Full=Eukaryotic translation initiation factor ...   171   4e-41
AF160896_1(AF160896|pid:none) Drosophila melanogaster GM14618 fu...   169   1e-40
(B3N4F1) RecName: Full=Eukaryotic translation initiation factor ...   168   3e-40
(B3MP94) RecName: Full=Eukaryotic translation initiation factor ...   167   8e-40
(B4KGS4) RecName: Full=Eukaryotic translation initiation factor ...   167   8e-40
(B4LTW0) RecName: Full=Eukaryotic translation initiation factor ...   167   8e-40
(B4JAS7) RecName: Full=Eukaryotic translation initiation factor ...   166   1e-39
DQ440248_1(DQ440248|pid:none) Aedes aegypti clone AET-299 transl...   166   2e-39
(B5DJJ2) RecName: Full=Eukaryotic translation initiation factor ...   164   5e-39
(A4QT78) RecName: Full=Eukaryotic translation initiation factor ...   162   1e-38
(Q6C1I3) RecName: Full=Eukaryotic translation initiation factor ...   151   4e-35
CR940348_656(CR940348|pid:none) Theileria annulata strain Ankara...   141   5e-32
FN357506_10(FN357506|pid:none) Schistosoma mansoni genome sequen...   119   1e-25
CP000501_356(CP000501|pid:none) Pichia stipitis CBS 6054 chromos...   115   2e-24
FM992690_695(FM992690|pid:none) Candida dubliniensis CD36 chromo...   110   1e-22
(A8WVY9) RecName: Full=Eukaryotic translation initiation factor ...   110   1e-22
T28786(T28786)hypothetical protein C41D11.2 - Caenorhabditis ele...   109   2e-22
AK296162_1(AK296162|pid:none) Homo sapiens cDNA FLJ57508 complet...   107   7e-22
BT068909_1(BT068909|pid:none) Zea mays full-length cDNA clone ZM...    99   3e-19
EU673710_1(EU673710|pid:none) Drosophila silvestris eukaryotic i...    95   4e-18
CR954213_305(CR954213|pid:none) Ostreococcus tauri strain OTTH05...    86   2e-15
FN392321_975(FN392321|pid:none) Pichia pastoris GS115 chromosome...    74   7e-12
FN319272_1(FN319272|pid:none) Schistosoma japonicum isolate Anhu...    62   5e-08
CR548612_20(CR548612|pid:none) Paramecium tetraurelia macronucle...    60   2e-07
CP000882_36(CP000882|pid:none) Hemiselmis andersenii chromosome ...    59   3e-07
BX538352_11(BX538352|pid:none) Cryptosporidium parvum chromosome...    57   1e-06
BX005205_1(BX005205|pid:none) Zebrafish DNA sequence from clone ...    55   4e-06
AJ010592_110(AJ010592|pid:none) Guillardia theta DNA for complet...    54   7e-06
FN392320_965(FN392320|pid:none) Pichia pastoris GS115 chromosome...    54   1e-05
(Q750E9) RecName: Full=26S proteasome regulatory subunit RPN11; ...    52   4e-05
CU928165_76(CU928165|pid:none) Kluyveromyces thermotolerans stra...    52   5e-05
CR940348_763(CR940348|pid:none) Theileria annulata strain Ankara...    51   8e-05
CR382125_616(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    51   8e-05
AY152546_1(AY152546|pid:none) Saccharomyces cerevisiae 26S prote...    50   1e-04
AL590450_57(AL590450|pid:none) chromosome XI of strain GB-M1 of ...    50   2e-04
(Q6FKS1) RecName: Full=26S proteasome regulatory subunit RPN11; ...    50   2e-04
AM910993_24(AM910993|pid:none) Plasmodium knowlesi strain H chro...    49   3e-04
AL844509_665(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    48   5e-04
GN125683_1(GN125683|pid:none) Sequence 8579 from Patent WO200903...    48   5e-04
AM494957_58(AM494957|pid:none) Leishmania braziliensis chromosom...    48   7e-04
BT070585_1(BT070585|pid:none) Picea sitchensis clone WS02737_M03...    48   7e-04
AM484392_1(AM484392|pid:none) Vitis vinifera contig VV78X043448....    47   0.001
AP007166_211(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...    47   0.001
AM270139_47(AM270139|pid:none) Aspergillus niger contig An07c022...    47   0.001
DQ440392_1(DQ440392|pid:none) Aedes aegypti clone AET-5254 26S p...    46   0.003
AK150280_1(AK150280|pid:none) Mus musculus bone marrow macrophag...    46   0.003
CR940348_634(CR940348|pid:none) Theileria annulata strain Ankara...    46   0.003
(Q9LT08) RecName: Full=26S proteasome non-ATPase regulatory subu...    46   0.003
(Q9V3H2) RecName: Full=26S proteasome non-ATPase regulatory subu...    46   0.003
BC045094_1(BC045094|pid:none) Xenopus laevis 26S proteasome-asso...    46   0.003
Y13071_1(Y13071|pid:none) Mus musculus mRNA for 26S proteasome n...    46   0.003
AY086277_1(AY086277|pid:none) Arabidopsis thaliana clone 23276 m...    46   0.003
GN125707_1(GN125707|pid:none) Sequence 8603 from Patent WO200903...    45   0.003
BT082336_1(BT082336|pid:none) Anoplopoma fimbria clone afim-evh-...    45   0.003
AB037152_1(AB037152|pid:none) Oryza sativa Japonica Group OsRPN1...    45   0.005
BT080708_1(BT080708|pid:none) Caligus clemensi clone ccle-evs-50...    45   0.005
CP000587_74(CP000587|pid:none) Ostreococcus lucimarinus CCE9901 ...    44   0.008
AF404119_1(AF404119|pid:none) Trypanosoma brucei proteasome regu...    44   0.008
AJ245813_1(AJ245813|pid:none) Aphrocallistes vastus mRNA for pot...    44   0.013
AJ249917_1(AJ249917|pid:none) Aphrocallistes vastus mRNA for put...    44   0.013
AJ872072_1(AJ872072|pid:none) Bacillus thuringiensis gene for Is...    44   0.013
DQ997624_152(DQ997624|pid:none) Thermus thermophilus phage YS40,...    43   0.017
D31731_1(D31731|pid:none) Schizosaccharomyces pombe pad1+ gene f...    43   0.022
FN314297_1(FN314297|pid:none) Schistosoma japonicum isolate Anhu...    43   0.022
CP000923_1678(CP000923|pid:none) Thermoanaerobacter sp. X514, co...    42   0.029
DQ832323_1(DQ832323|pid:none) Bacillus thuringiensis VipS gene, ...    42   0.038
EU287924_1(EU287924|pid:none) Bacillus thuringiensis Vip3Ah1 gen...    42   0.038
(B4NJR8) RecName: Full=Eukaryotic translation initiation factor ...    42   0.038
DQ241674_1(DQ241674|pid:none) Bacillus thuringiensis isolate BtA...    42   0.050
DQ054848_1(DQ054848|pid:none) Bacillus thuringiensis Vip3D (vip3...    42   0.050
AE017341_41(AE017341|pid:none) Cryptococcus neoformans var. neof...    42   0.050
AY739647_1(AY739647|pid:none) Bacillus thuringiensis vegetative ...    41   0.065
AY960853_1(AY960853|pid:none) Synthetic construct vegetative ins...    41   0.065
AY743436_1(AY743436|pid:none) Bacillus thuringiensis strain WY-1...    41   0.085
AY945939_1(AY945939|pid:none) Bacillus thuringiensis strain 9816...    41   0.085
AJ971413_1(AJ971413|pid:none) Bacillus thuringiensis vip3A gene ...    41   0.085
DQ539888_1(DQ539888|pid:none) Synthetic construct MIR162 Vip3Aa ...    41   0.085
AF373030_1(AF373030|pid:none) Bacillus thuringiensis vegetative ...    41   0.085
EU294496_1(EU294496|pid:none) Bacillus thuringiensis strain TF9 ...    41   0.085
(Q0UTQ6) RecName: Full=Eukaryotic translation initiation factor ...    41   0.085
FN314296_1(FN314296|pid:none) Schistosoma japonicum isolate Anhu...    41   0.085
Y17158_1(Y17158|pid:none) Bacillus thuringiensis vip-s gene.           41   0.085
FM864216_232(FM864216|pid:none) Mycoplasma conjunctivae HRC/581T...    41   0.085
AY074706_1(AY074706|pid:none) Bacillus thuringiensis strain S184...    41   0.085
DQ016968_1(DQ016968|pid:none) Bacillus thuringiensis strain LS1 ...    41   0.085
DQ016969_1(DQ016969|pid:none) Bacillus thuringiensis strain LS8 ...    41   0.085
AF399667_1(AF399667|pid:none) Bacillus thuringiensis strain HD12...    41   0.085
(B4JGX4) RecName: Full=Eukaryotic translation initiation factor ...    40   0.11
EF608501_1(EF608501|pid:none) Bacillus thuringiensis strain G10-...    40   0.11
(B3P239) RecName: Full=Eukaryotic translation initiation factor ...    40   0.11
(A8PZS4) RecName: Full=Eukaryotic translation initiation factor ...    40   0.15
(Q4PI88) RecName: Full=Eukaryotic translation initiation factor ...    40   0.15
EU541373_1(EU541373|pid:none) Bacillus thuringiensis strain 519-...    40   0.15
AM502225_133(AM502225|pid:none) Leishmania infantum chromosome 7.      40   0.15
(B3M123) RecName: Full=Eukaryotic translation initiation factor ...    40   0.15
DQ443287_1(DQ443287|pid:none) Bombyx mori eukaryotic translation...    40   0.15
EU332167_1(EU332167|pid:none) Bacillus thuringiensis vegetative ...    40   0.15
AJ872071_1(AJ872071|pid:none) Bacillus thuringiensis gene for Is...    40   0.19
EF086029_1(EF086029|pid:none) Picea sitchensis clone WS02712_N06...    40   0.19
(B4GDU3) RecName: Full=Eukaryotic translation initiation factor ...    39   0.25
CR761801_1(CR761801|pid:none) Xenopus tropicalis finished cDNA, ...    39   0.25
A64165_1(A64165|pid:none) Sequence 31 from Patent WO9726339.  &A...    39   0.25
AF548629_1(AF548629|pid:none) Bacillus thuringiensis serovar tol...    39   0.32
(Q6C703) RecName: Full=COP9 signalosome complex subunit 5;      ...    39   0.32
AL844508_267(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.42
FJ556803_1(FJ556803|pid:none) Bacillus thuringiensis serovar mor...    39   0.42
CR954207_75(CR954207|pid:none) Ostreococcus tauri strain OTTH059...    38   0.55
CP000724_1612(CP000724|pid:none) Alkaliphilus metalliredigens QY...    38   0.55
CP000885_1617(CP000885|pid:none) Clostridium phytofermentans ISD...    38   0.55
AM422018_68(AM422018|pid:none) Candidatus Phytoplasma australien...    38   0.55
EF679807_1(EF679807|pid:none) Bacillus thuringiensis strain IIHR...    38   0.55
BA000021_607(BA000021|pid:none) Wigglesworthia glossinidia endos...    35   0.63
AB034251_1(AB034251|pid:none) Homo sapiens NSR2 mRNA for nurse c...    38   0.72
(Q9P748) RecName: Full=Eukaryotic translation initiation factor ...    38   0.72
BC060789_1(BC060789|pid:none) Homo sapiens collectin sub-family ...    38   0.72
(Q54C49) RecName: Full=Eukaryotic translation initiation factor ...    38   0.72
CP000436_1712(CP000436|pid:none) Haemophilus somnus 129PT, compl...    38   0.72
CP001072_283(CP001072|pid:none) Helicobacter pylori Shi470, comp...    38   0.72
CP000724_3817(CP000724|pid:none) Alkaliphilus metalliredigens QY...    38   0.72
(Q8J1G7) RecName: Full=Kinesin-like protein CIN8;  &AE016816_215...    38   0.72
(Q6BMQ3) RecName: Full=COP9 signalosome complex subunit 5;      ...    38   0.72
AB038518_1(AB038518|pid:none) Homo sapiens SRCL mRNA for scaveng...    38   0.72
(Q7QD36) RecName: Full=Eukaryotic translation initiation factor ...    37   0.94
CR548612_442(CR548612|pid:none) Paramecium tetraurelia macronucl...    37   0.94
(Q8WZY4) RecName: Full=26S proteasome regulatory subunit rpn-8; ...    37   0.94
(Q8I3Z1) RecName: Full=MATH and LRR domain-containing protein PF...    37   1.2
(O00303) RecName: Full=Eukaryotic translation initiation factor ...    37   1.2
(P47037) RecName: Full=Structural maintenance of chromosomes pro...    37   1.2
AK093511_1(AK093511|pid:none) Homo sapiens cDNA FLJ36192 fis, cl...    37   1.2
AM260494_1(AM260494|pid:none) Platanus acerifolia partial mRNA f...    37   1.2
DQ222517_1(DQ222517|pid:none) Solanum tuberosum clone 119G03 unk...    37   1.2
AK297621_1(AK297621|pid:none) Homo sapiens cDNA FLJ52696 complet...    37   1.2
AK095574_1(AK095574|pid:none) Homo sapiens cDNA FLJ38255 fis, cl...    37   1.2
AM422018_203(AM422018|pid:none) Candidatus Phytoplasma australie...    37   1.2
(Q6FRH2) RecName: Full=Autophagy-related protein 11;  &CR380954_...    37   1.2
AM422018_798(AM422018|pid:none) Candidatus Phytoplasma australie...    37   1.2
CP001323_235(CP001323|pid:none) Micromonas sp. RCC299 chromosome...    37   1.2
BX548174_61(BX548174|pid:none) Prochlorococcus marinus MED4 comp...    37   1.6
(B1AI24) RecName: Full=tRNA uridine 5-carboxymethylaminomethyl m...    37   1.6
(Q9VCY3) RecName: Full=COP9 signalosome complex subunit 6;      ...    37   1.6
AM422018_48(AM422018|pid:none) Candidatus Phytoplasma australien...    37   1.6
AC116920_20(AC116920|pid:none) Dictyostelium discoideum chromoso...    36   2.1
(Q54WI8) RecName: Full=26S proteasome non-ATPase regulatory subu...    36   2.1
(Q1HR47) RecName: Full=Eukaryotic translation initiation factor ...    36   2.1
FM992689_179(FM992689|pid:none) Candida dubliniensis CD36 chromo...    36   2.1
AM270155_18(AM270155|pid:none) Aspergillus niger contig An07c038...    36   2.1
CP000576_1213(CP000576|pid:none) Prochlorococcus marinus str. MI...    36   2.1
(B0X2G0) RecName: Full=Eukaryotic translation initiation factor ...    36   2.1
EF679802_1(EF679802|pid:none) Bacillus thuringiensis strain IIHR...    36   2.7
AF499596_104(AF499596|pid:none) Phthorimaea operculella granulov...    36   2.7
EF679801_1(EF679801|pid:none) Bacillus thuringiensis strain IIHR...    36   2.7
AK088537_1(AK088537|pid:none) Mus musculus 2 days neonate thymus...    36   2.7
EF679795_1(EF679795|pid:none) Bacillus thuringiensis strain IIHR...    36   2.7
EF679794_1(EF679794|pid:none) Bacillus thuringiensis strain IIHR...    36   2.7
AJ609020_1(AJ609020|pid:none) Cacao swollen shoot virus complete...    36   2.7
EF679796_1(EF679796|pid:none) Bacillus thuringiensis strain IIHR...    36   2.7
EF679808_1(EF679808|pid:none) Bacillus thuringiensis strain IIHR...    36   2.7
BC083190_1(BC083190|pid:none) Mus musculus eukaryotic translatio...    36   2.7
AF014466_1(AF014466|pid:none) Schistosoma mansoni trans-spliced ...    36   2.7
AM454082_1(AM454082|pid:none) Vitis vinifera contig VV78X245291....    36   2.7
EF679798_1(EF679798|pid:none) Bacillus thuringiensis strain IIHR...    36   2.7
AF083031_40(AF083031|pid:none) Guillardia theta nucleomorph chro...    36   2.7
(Q4V885) RecName: Full=Collectin-12; AltName: Full=Collectin pla...    36   2.7
AE017308_33(AE017308|pid:none) Mycoplasma mobile 163K complete g...    36   2.7
AK136797_1(AK136797|pid:none) Mus musculus adult male diencephal...    36   2.7
(B5ZAL6) RecName: Full=tRNA uridine 5-carboxymethylaminomethyl m...    36   2.7
AE001438_79(AE001438|pid:none) Clostridium acetobutylicum ATCC 8...    35   3.6
AY619646_1(AY619646|pid:none) Cucumis melo cultivar Durango Fom-...    35   3.6
CP000552_857(CP000552|pid:none) Prochlorococcus marinus str. MIT...    35   3.6
EF679803_1(EF679803|pid:none) Bacillus thuringiensis strain IIHR...    35   3.6
AF028783_1(AF028783|pid:none) Hypocrea jecorina proteasome regul...    35   3.6
CP000863_993(CP000863|pid:none) Acinetobacter baumannii ACICU, c...    35   4.7
CP000814_44(CP000814|pid:none) Campylobacter jejuni subsp. jejun...    35   4.7
FM164764_26(FM164764|pid:none) Stygiolobus rod-shaped virus.           35   4.7
T23395(T23395) hypothetical protein K07A12.2 - Caenorhabditis el...    35   4.7
(Q2HGJ2) RecName: Full=Eukaryotic translation initiation factor ...    35   4.7
CP001047_240(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ...    35   4.7
AM910994_397(AM910994|pid:none) Plasmodium knowlesi strain H chr...    35   4.7
AL844505_89(AL844505|pid:none) Plasmodium falciparum 3D7 chromos...    35   4.7
(Q54Z40) RecName: Full=Myb-like protein H;                             35   6.1
CP001227_386(CP001227|pid:none) Rickettsia peacockii str. Rustic...    35   6.1
AJ320541_1(AJ320541|pid:none) Candida albicans fab1 gene for pho...    35   6.1
EF081796_1(EF081796|pid:none) Picea sitchensis clone WS0296_L22 ...    35   6.1
(Q04053) RecName: Full=Sorting nexin-41;  &S69707(S69707) &U3300...    35   6.1
AL844507_24(AL844507|pid:none) Plasmodium falciparum 3D7 chromos...    35   6.1
FN317050_1(FN317050|pid:none) Schistosoma japonicum isolate Anhu...    34   8.0
AK111694_1(AK111694|pid:none) Oryza sativa Japonica Group cDNA c...    34   8.0
AE014187_563(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    34   8.0
(Q6CRJ8) RecName: Full=COP9 signalosome complex subunit 5;      ...    34   8.0
CP000521_1080(CP000521|pid:none) Acinetobacter baumannii ATCC 17...    34   8.0
AL844505_233(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    34   8.0
FM992695_650(FM992695|pid:none) Candida dubliniensis CD36 chromo...    34   8.0
EZ000135_1(EZ000135|pid:none) TSA: Schistosoma japonicum SJCHGC0...    34   8.0

>(Q54UD0) RecName: Full=Eukaryotic translation initiation factor 3
            subunit H;          Short=eIF3h; AltName: Full=Eukaryotic
            translation initiation factor 3 subunit 3; AltName:
            Full=eIF-3 gamma;
          Length = 319

 Score =  635 bits (1637), Expect = e-180
 Identities = 319/319 (100%), Positives = 319/319 (100%)
 Frame = +2

Query: 95   MDIDEQIIQDYSNSKLDVVQIDGLVVLKIIKQCKEYLPELVPGQLLGLDIGTSLEVSNCF 274
            MDIDEQIIQDYSNSKLDVVQIDGLVVLKIIKQCKEYLPELVPGQLLGLDIGTSLEVSNCF
Sbjct: 1    MDIDEQIIQDYSNSKLDVVQIDGLVVLKIIKQCKEYLPELVPGQLLGLDIGTSLEVSNCF 60

Query: 275  PFPPRDQEDENSESIADYQLEMMRFLREVNIDSNTVGWYTPTYLNSFFNESVIETQYNYQ 454
            PFPPRDQEDENSESIADYQLEMMRFLREVNIDSNTVGWYTPTYLNSFFNESVIETQYNYQ
Sbjct: 61   PFPPRDQEDENSESIADYQLEMMRFLREVNIDSNTVGWYTPTYLNSFFNESVIETQYNYQ 120

Query: 455  ATINQKCVVIVYDPIKTSQGTLSLKCYRLTQSFMELFKDQSFSRERLDQANLSFNDIFEQ 634
            ATINQKCVVIVYDPIKTSQGTLSLKCYRLTQSFMELFKDQSFSRERLDQANLSFNDIFEQ
Sbjct: 121  ATINQKCVVIVYDPIKTSQGTLSLKCYRLTQSFMELFKDQSFSRERLDQANLSFNDIFEQ 180

Query: 635  IPIKIHNSQLINALLYEFDGASNNLTNSFDRLNISNNIYLEKVVEGMTDCLESLNQELNK 814
            IPIKIHNSQLINALLYEFDGASNNLTNSFDRLNISNNIYLEKVVEGMTDCLESLNQELNK
Sbjct: 181  IPIKIHNSQLINALLYEFDGASNNLTNSFDRLNISNNIYLEKVVEGMTDCLESLNQELNK 240

Query: 815  VYINQRNIQTQKTNYIQQKFLEGQKVDEDELASMIKPLNPPSKLTSLLLTNQINNYTDQI 994
            VYINQRNIQTQKTNYIQQKFLEGQKVDEDELASMIKPLNPPSKLTSLLLTNQINNYTDQI
Sbjct: 241  VYINQRNIQTQKTNYIQQKFLEGQKVDEDELASMIKPLNPPSKLTSLLLTNQINNYTDQI 300

Query: 995  HSFSGNSLTKLSLLKDLQK 1051
            HSFSGNSLTKLSLLKDLQK
Sbjct: 301  HSFSGNSLTKLSLLKDLQK 319

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,381,756,036
Number of extensions: 24783823
Number of successful extensions: 74013
Number of sequences better than 10.0: 227
Number of HSP's gapped: 73710
Number of HSP's successfully gapped: 229
Length of query: 364
Length of database: 1,061,185,681
Length adjustment: 130
Effective length of query: 234
Effective length of database: 636,287,441
Effective search space: 148891261194
Effective search space used: 148891261194
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.47  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 36.0 %: nuclear
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U04971-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0