Contig-U04959-1
Contig ID Contig-U04959-1
Contig update 2001. 8.29
Contig sequence
>Contig-U04959-1 (Contig-U04959-1Q) /CSM_Contig/Contig-U04959-1Q.Seq.d
AAGAAGTCAATCATTTAGTATTATTAAATTGTATTGGTATCAATCCAGAA
CAAGCTAATCAATTATTAAATAATTTAATTTCAATTGATACTTTACATTT
AAATTATAGAGACCCAAACTCTCAAGAATTCATCTTTAAAATTTTATATG
AAACTAATAGTAGTTGTCTTAGTTTTCTATCAAGAATTTTCACTGATATA
ATTCGTATAAATGATATTTATTACATTTTAAGAATGGCTCCAAATTTAAA
AGAATTAGATTTTGACATTTGTATTGATAATATAATTTATCAATTAGAAT
TAAATAATAATAAAAATAATAAAAATAATTTCAGTATTAGTAGTATTATT
AGTAGTAATGATTGCCCAATTATTAGTAGTAGTAATAATAGCTATAATAA
TTTTAATAATTTTAATAATAATAATAATAATAATTTTCAACAACATTGTA
AATGTTGTTCAAAAGATTATAATATTAATTTTATTGAAAATTGGCAATCA
ATTATTGAATTATTAAAGAAAAGTAAAAGTTTAAAGAAATTATCAATTGG
TCATAAATGTTGTGAAT

Gap no gap
Contig length 567
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3539765
End point 3540332
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U04959
List of clone(s)

est1=SSE218F,1,568
Translated Amino Acid sequence
EVNHLVLLNCIGINPEQANQLLNNLISIDTLHLNYRDPNSQEFIFKILYETNSSCLSFLS
RIFTDIIRINDIYYILRMAPNLKELDFDICIDNIIYQLELNNNKNNKNNFSISSIISSND
CPIISSSNNSYNNFNNFNNNNNNNFQQHCKCCSKDYNINFIENWQSIIELLKKSKSLKKL
SIGHKCCE


Translated Amino Acid sequence (All Frames)
Frame A:
kksii*yy*ivlvsiqnkliny*ii*fqlilyi*iietqtlknsslkfymklivvvlvfy
qefsli*fv*mifitf*ewlqi*kn*iltfvlii*fin*n*iiikiikiisvlvvllvvm
iaqllvvviiaiiiliiliiiiiiifnnivnvvqkiiilillkignqllny*rkvkv*rn
yqlvinvvn


Frame B:
rsqsfsiiklywyqsrts*siik*fnfn*yftfkl*rpklsrihl*nfi*n***ls*fsi
knfh*ynsyk*yllhfkngskfkrirf*hly**ynlsirik***k**k*fqy**yy****
lpny******l**f**f*******fsttl*mlfkrl*y*fy*klainy*iikek*kfkei
inws*ml*


Frame C:
EVNHLVLLNCIGINPEQANQLLNNLISIDTLHLNYRDPNSQEFIFKILYETNSSCLSFLS
RIFTDIIRINDIYYILRMAPNLKELDFDICIDNIIYQLELNNNKNNKNNFSISSIISSND
CPIISSSNNSYNNFNNFNNNNNNNFQQHCKCCSKDYNINFIENWQSIIELLKKSKSLKKL
SIGHKCCE


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U04959-1 (Contig-U04959-1Q)
/CSM_Contig/Contig-U04959-1Q.Seq.d
(567 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04959-1 (Contig-U04959-1Q) /CSM_Contig/Conti... 547 e-156
Contig-U11803-1 (Contig-U11803-1Q) /CSM_Contig/Conti... 42 6e-04
Contig-U13171-1 (Contig-U13171-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U14247-1 (Contig-U14247-1Q) /CSM_Contig/Conti... 38 0.010
Contig-U12444-1 (Contig-U12444-1Q) /CSM_Contig/Conti... 36 0.040
Contig-U12139-1 (Contig-U12139-1Q) /CSM_Contig/Conti... 36 0.040
Contig-U11881-1 (Contig-U11881-1Q) /CSM_Contig/Conti... 36 0.040
Contig-U10835-1 (Contig-U10835-1Q) /CSM_Contig/Conti... 36 0.040
Contig-U09142-1 (Contig-U09142-1Q) /CSM_Contig/Conti... 36 0.040
Contig-U08769-1 (Contig-U08769-1Q) /CSM_Contig/Conti... 36 0.040

>Contig-U04959-1 (Contig-U04959-1Q) /CSM_Contig/Contig-U04959-1Q.Seq.d
Length = 567

Score = 547 bits (276), Expect = e-156
Identities = 276/276 (100%)
Strand = Plus / Plus


Query: 1 aagaagtcaatcatttagtattattaaattgtattggtatcaatccagaacaagctaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagaagtcaatcatttagtattattaaattgtattggtatcaatccagaacaagctaatc 60


Query: 61 aattattaaataatttaatttcaattgatactttacatttaaattatagagacccaaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aattattaaataatttaatttcaattgatactttacatttaaattatagagacccaaact 120


Query: 121 ctcaagaattcatctttaaaattttatatgaaactaatagtagttgtcttagttttctat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctcaagaattcatctttaaaattttatatgaaactaatagtagttgtcttagttttctat 180


Query: 181 caagaattttcactgatataattcgtataaatgatatttattacattttaagaatggctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caagaattttcactgatataattcgtataaatgatatttattacattttaagaatggctc 240


Query: 241 caaatttaaaagaattagattttgacatttgtattg 276
||||||||||||||||||||||||||||||||||||
Sbjct: 241 caaatttaaaagaattagattttgacatttgtattg 276


Score = 264 bits (133), Expect = 9e-71
Identities = 133/133 (100%)
Strand = Plus / Plus


Query: 435 tttcaacaacattgtaaatgttgttcaaaagattataatattaattttattgaaaattgg 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tttcaacaacattgtaaatgttgttcaaaagattataatattaattttattgaaaattgg 494


Query: 495 caatcaattattgaattattaaagaaaagtaaaagtttaaagaaattatcaattggtcat 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 caatcaattattgaattattaaagaaaagtaaaagtttaaagaaattatcaattggtcat 554


Query: 555 aaatgttgtgaat 567
|||||||||||||
Sbjct: 555 aaatgttgtgaat 567


>Contig-U11803-1 (Contig-U11803-1Q) /CSM_Contig/Contig-U11803-1Q.Seq.d
Length = 2021

Score = 42.1 bits (21), Expect = 6e-04
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 480 tttattgaaaattggcaatcaatta 504
|||||||||||||| ||||||||||
Sbjct: 598 tttattgaaaattgtcaatcaatta 622


>Contig-U13171-1 (Contig-U13171-1Q) /CSM_Contig/Contig-U13171-1Q.Seq.d
Length = 639

Score = 40.1 bits (20), Expect = 0.003
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 62 attattaaataatttaattt 81
||||||||||||||||||||
Sbjct: 7 attattaaataatttaattt 26


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,203
Number of Sequences: 6905
Number of extensions: 13203
Number of successful extensions: 1849
Number of sequences better than 10.0: 607
length of query: 567
length of database: 5,674,871
effective HSP length: 16
effective length of query: 551
effective length of database: 5,564,391
effective search space: 3065979441
effective search space used: 3065979441
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7. 5
Homology vs DNA
Query= Contig-U04959-1 (Contig-U04959-1Q) /CSM_Contig/Contig-U04959-1Q.Seq.d
(567 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU072334) Dictyostelium discoideum slug cDNA, clone SSE218. 476 e-130 1
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117... 34 0.002 9
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 36 0.004 11
(CU062484) Zebrafish DNA sequence from clone CH73-329L6 in l... 54 0.006 1
(CU929429) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 54 0.006 1
(BW442541) Ciona intestinalis cDNA, clone:cijv408m11, 5'end,... 54 0.006 1
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 38 0.008 11
(AE017308) Mycoplasma mobile 163K complete genome. 38 0.009 12
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 40 0.009 11
(FH502988) CHO_OF4634xj20r1.ab1 CHO_OF4 Nicotiana tabacum ge... 52 0.023 1
(FH502920) CHO_OF4634xj20f1.ab1 CHO_OF4 Nicotiana tabacum ge... 52 0.023 1
(CS374671) Sequence 774 from Patent WO2006034879. 44 0.024 2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 36 0.024 12
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699... 32 0.028 14
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s... 32 0.030 10
(AF474333) Dictyostelium discoideum ABC transporter ABCC.1 (... 32 0.043 4
(AC116921) Dictyostelium discoideum chromosome 2 map 4624505... 38 0.049 5
(BX247881) Zebrafish DNA sequence from clone DKEY-10M1 in li... 40 0.057 2
(CZ960840) 306574 Tomato EcoRI BAC Library Solanum lycopersi... 32 0.073 3
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 40 0.079 8
(AC211098) Equus caballus clone CH241-7J14, WORKING DRAFT SE... 38 0.081 6
(AC101715) Mus musculus chromosome 1, clone RP23-283P17, com... 46 0.084 3
(ES609569) M09f02 American mink brain Neovison vison cDNA cl... 50 0.093 1
(AM467789) Vitis vinifera contig VV78X189978.5, whole genome... 40 0.095 2
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9... 38 0.11 9
(AL844509) Plasmodium falciparum chromosome 13. 38 0.12 14
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 34 0.12 9
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 34 0.14 14
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com... 34 0.14 14
(AC166613) Oryctolagus cuniculus clone LB1-299C4, WORKING DR... 38 0.15 4
(CR382136) Debaryomyces hansenii strain CBS767 chromosome A ... 36 0.15 11
(EK361350) 1095469010018 Global-Ocean-Sampling_GS-31-01-01-1... 46 0.20 2
(AC216771) Populus trichocarpa clone POP051-N07, complete se... 38 0.22 2
(AM285310) Spiroplasma citri GII3-3X chromosome, contig Cont... 36 0.23 5
(AC232000) Solanum tuberosum chromosome 1 clone RH019G04, **... 44 0.26 5
(CF764200) CES004349 Bos taurus skin cDNA library Bos taurus... 42 0.26 2
(DU951996) 221754 Tomato MboI BAC Library Solanum lycopersic... 36 0.27 2
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 32 0.28 14
(AE000783) Borrelia burgdorferi B31, complete genome. 34 0.29 14
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 32 0.33 9
(AC141595) Homo sapiens chromosome 5 clone RP11-1299M21, WOR... 36 0.35 6
(EK409843) 1095505155202 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.37 1
(EJ876979) 1093018374773 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.37 1
(EJ786454) 1093017318940 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.37 1
(AP009260) Solanum lycopersicum genomic DNA, chromosome 8, c... 38 0.37 5
(AC232863) Solanum lycopersicum chromosome 6 clone C06SLm000... 38 0.41 4
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 36 0.46 10
(AM479111) Vitis vinifera, whole genome shotgun sequence, co... 42 0.49 3
(AL035477) Plasmodium falciparum MAL4P4. 32 0.53 8
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 32 0.54 9
(BH976467) odg02h02.b1 B.oleracea002 Brassica oleracea genom... 32 0.55 3
(CR382401) Plasmodium falciparum chromosome 6, complete sequ... 32 0.56 8
(AC006279) Plasmodium falciparum chromosome 12 clone PFYAC61... 40 0.60 6
(DQ347960) Glycine max clone GM24D13, *** SEQUENCING IN PROG... 36 0.77 5
(BH137935) ENTNI42TR Entamoeba histolytica Sheared DNA Entam... 32 0.78 3
(CR848701) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.85 5
(FG286524) 1108770716542 New World Screwworm Egg 9261 ESTs C... 42 0.87 2
(AC118400) Rattus norvegicus clone CH230-125F1, *** SEQUENCI... 34 0.93 7
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 32 0.97 11
(EI880746) CAH1-64G10TR CAA1Ba Cicer arietinum genomic clone... 34 1.0 2
(CR392025) Zebrafish DNA sequence from clone CH211-248P17 in... 36 1.0 6
(AM472134) Vitis vinifera contig VV78X236086.8, whole genome... 40 1.0 3
(EK270916) 1095462256451 Global-Ocean-Sampling_GS-31-01-01-1... 36 1.1 3
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co... 34 1.1 5
(AC214615) Heliconius erato clone BBAM-36L22, WORKING DRAFT ... 32 1.1 8
(U40953) Caenorhabditis elegans cosmid F53B1, complete seque... 40 1.2 4
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 30 1.2 11
(AC133906) Mus musculus chromosome 14, clone RP24-230P12, co... 42 1.4 3
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 32 1.4 8
(FB571381) Sequence 248 from Patent EP1865317. 30 1.4 9
(BX510315) Zebrafish DNA sequence from clone CH211-59I18 in ... 46 1.4 1
(AL928830) Zebrafish DNA sequence from clone CH211-119E16. 46 1.4 1
(AC144630) Mus musculus BAC clone RP23-284O15 from chromosom... 46 1.4 1
(AC123178) Rattus norvegicus 7 BAC CH230-20I17 (Children's H... 46 1.4 1
(AC162031) Medicago truncatula chromosome 8 clone mth2-194a2... 46 1.4 1
(AL157759) Human DNA sequence from clone RP11-107L16 on chro... 46 1.4 1
(AC095059) Homo sapiens BAC clone RP11-428L21 from 4, comple... 46 1.4 1
(AC134513) Rattus norvegicus clone CH230-13G24, *** SEQUENCI... 46 1.4 1
(AC130733) Rattus norvegicus clone CH230-4F2, *** SEQUENCING... 46 1.4 1
(AC123344) Rattus norvegicus clone CH230-140G20, WORKING DRA... 46 1.4 1
(AC117327) Rattus norvegicus clone CH230-169M4, *** SEQUENCI... 46 1.4 1
(AC108254) Rattus norvegicus clone CH230-116H8, *** SEQUENCI... 46 1.4 1
(AC096179) Rattus norvegicus clone CH230-50G12, WORKING DRAF... 46 1.4 1
(BX324152) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.4 1
(AC181188) Strongylocentrotus purpuratus clone R3-13K7, WORK... 46 1.4 1
(AC179080) Strongylocentrotus purpuratus clone R3-1108A19, W... 46 1.4 1
(AC176234) Strongylocentrotus purpuratus clone R3-3005H11, W... 46 1.4 1
(AC168782) Strongylocentrotus purpuratus clone R3-13L8, WORK... 46 1.4 1
(AC168775) Strongylocentrotus purpuratus clone R3-13M8, WORK... 46 1.4 1
(AC164791) Bos taurus clone CH240-154G17, *** SEQUENCING IN ... 46 1.4 1
(AC164145) Bos taurus clone CH240-140N3, *** SEQUENCING IN P... 46 1.4 1
(AC015681) Homo sapiens chromosome 2 clone RP11-188K18 map 2... 46 1.4 1
(ER625931) 1093018087866 Global-Ocean-Sampling_GS-36-01-01-2... 46 1.4 1
(EK202356) 1095460061800 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.4 1
(EK093206) 1092962018370 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.4 1
(EK090035) 1092961208022 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.4 1
(EJ034925) 1095454066253 Global-Ocean-Sampling_GS-26-01-01-1... 46 1.4 1
(DU888360) 389985 Tomato HindIII BAC Library Solanum lycoper... 46 1.4 1
(DH256449) Oryzias latipes Fosmid clone:GOLWFno577_m19, forw... 46 1.4 1
(AG529901) Mus musculus molossinus DNA, clone:MSMg01-439J07.... 46 1.4 1
(EC990114) WIN1138.C21_J22 Muscat Hamburg pre-veraison berry... 46 1.4 1
(CN762051) ID0AAA3CB05FM1 ApMS Acyrthosiphon pisum cDNA clon... 46 1.4 1
(CN586007) USDA-FP_129079 Acyrthosiphon pisum, Pea Aphid Acy... 46 1.4 1
(CA055777) ssalrgb542319 mixed_tissue Salmo salar cDNA, mRNA... 46 1.4 1
(BP535641) Acyrthosiphon pisum cDNA clone:BCA002044, 5 prime... 46 1.4 1
(GD186253) PUC-437 Aphid Immune Substracted library Acyrthos... 46 1.4 1
(GD186224) PUC-409 Aphid Immune Substracted library Acyrthos... 46 1.4 1
(FF317691) 280393335 Pea aphid whole body normalized full le... 46 1.4 1
(FF304745) 279361360 Pea aphid whole body normalized full le... 46 1.4 1
(EX632010) 256329328 Pea aphid whole body normalized full le... 46 1.4 1
(AC106317) Rattus norvegicus clone CH230-134L3, WORKING DRAF... 36 1.5 6
(EU626441) Gossypioides kirkii clone BAC 031A10, complete se... 38 1.6 7
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 32 1.6 11
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 32 1.6 8
(EU287446) Locusta migratoria migratoria mitochondrion, comp... 34 1.6 4
(AX344728) Sequence 153 from Patent WO0200927. 42 1.7 3
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 32 1.7 6
(CP001205) Borrelia burgdorferi ZS7, complete genome. 34 1.8 13
(DQ229107) Chara vulgaris chloroplast, complete genome. 36 1.9 6
(BH545030) BOHLJ41TF BOHL Brassica oleracea genomic clone BO... 40 1.9 2
(AX392736) Sequence 26 from Patent WO0212526. 40 1.9 5
(AR707083) Sequence 26 from patent US 6933145. 40 1.9 5
(AJ270218) Entodinium caudatum partial mRNA for hypothetical... 36 2.2 2
(AC115683) Dictyostelium discoideum chromosome 2 map complem... 36 2.2 4
(EI357302) GM_WBc0109A16.f GM_WBc Glycine max genomic clone ... 36 2.2 2
(AL139803) Human DNA sequence from clone RP11-77P3 on chromo... 38 2.2 5
(AM465489) Vitis vinifera contig VV78X030349.9, whole genome... 32 2.2 4
(ET679838) CHO_OF327xp02f1.ab1 CHO_OF Nicotiana tabacum geno... 34 2.2 2
(AX349036) Sequence 494 from Patent WO0202807. 30 2.3 6
(EK170323) 1095458071205 Global-Ocean-Sampling_GS-31-01-01-1... 42 2.3 2
(ER301775) 1092343708791 Global-Ocean-Sampling_GS-34-01-01-1... 36 2.3 3
(EJ217647) 1092351138853 Global-Ocean-Sampling_GS-27-01-01-1... 42 2.4 2
(EJ485000) 1095403494589 Global-Ocean-Sampling_GS-28-01-01-1... 36 2.5 3
(BX294132) Zebrafish DNA sequence from clone DKEY-16L23 in l... 34 2.5 6
(AM474104) Vitis vinifera contig VV78X076591.4, whole genome... 36 2.5 4
(ER334992) 1092344298494 Global-Ocean-Sampling_GS-34-01-01-1... 42 2.5 2
(EJ254995) 1095349003212 Global-Ocean-Sampling_GS-27-01-01-1... 42 2.5 2
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ... 34 2.7 7
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 36 2.7 7
(CR378664) Photobacterium profundum SS9; segment 2/12. 34 2.7 2
(ED699827) GM_WBb0040N16.f GM_WBb Glycine max genomic clone ... 42 2.7 2
(DQ158857) Bigelowiella natans nucleomorph chromosome 2, com... 34 2.7 8
(CU856274) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 2.8 2
(EJ889043) 1093018432920 Global-Ocean-Sampling_GS-30-02-01-1... 38 2.8 2
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1... 32 2.8 8
(AC107810) Mus musculus chromosome 1, clone RP23-68D4, compl... 34 2.9 2
(AC005140) Plasmodium falciparum chromosome 12 clone PFYACB8... 32 3.0 8
(ET728858) CHO_OF149xo11f1.ab1 CHO_OF Nicotiana tabacum geno... 34 3.0 3
(CR376738) Zebrafish DNA sequence from clone DKEY-97H16 in l... 32 3.1 6
(EK121724) 1092963612294 Global-Ocean-Sampling_GS-31-01-01-1... 36 3.1 3
(CU929951) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.2 6
(AM432584) Vitis vinifera contig VV78X002620.5, whole genome... 36 3.2 3
(AC187666) Microcebus murinus clone CH257-513H19, WORKING DR... 36 3.2 5
(AC141743) Apis mellifera clone CH224-58F9, WORKING DRAFT SE... 38 3.3 3
(AC136953) Medicago truncatula chromosome 8 clone mth2-20h6,... 34 3.5 4
(CU694868) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.6 6
(AG317232) Mus musculus molossinus DNA, clone:MSMg01-101P07.... 32 3.8 2
(DU073684) 61603 Tomato HindIII BAC Library Solanum lycopers... 34 3.8 2
(AE017263) Mesoplasma florum L1 complete genome. 34 3.8 12
(FP104559) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.9 7
(CT868699) CH251-168B4, complete sequence. 36 4.0 4
(AL590065) Human DNA sequence from clone RP11-307A17 on chro... 34 4.0 5
(CR926130) Zebrafish DNA sequence from clone DKEY-162H11 in ... 34 4.1 6
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 32 4.1 7
(Z97348) Plasmodium falciparum MAL3P1. 34 4.3 7
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome. 32 4.3 10
(EF661023) Carica papaya clone BAC PH61H02, complete sequence. 36 4.4 4
(AC234438) Homo sapiens chromosome X clone ABC10-44557200F2,... 36 4.5 4
(CS374399) Sequence 502 from Patent WO2006034879. 44 4.5 2
(AY278185) Aglais urticae haplotype 10 mitochondrial control... 36 4.5 2
(AC198005) Medicago truncatula chromosome 7 BAC clone mth2-1... 38 4.6 5
(X15965) Rabbit DNA for L1Oc5 repeat. 38 4.8 2
(CP000084) Candidatus Pelagibacter ubique HTCC1062, complete... 34 5.0 13
(AC005308) Plasmodium falciparum chromosome 12 clone PFYAC49... 34 5.0 7
(AP010026) Lotus japonicus genomic DNA, chromosome 2, clone:... 36 5.2 4
(CU855944) Zebrafish DNA sequence from clone CH73-184C24 in ... 36 5.2 3
(AC180262) Strongylocentrotus purpuratus clone R3-3008K9, WO... 42 5.2 3
(AC105754) Homo sapiens chromosome 1 clone RP4-814E15, compl... 42 5.3 2
(AC232566) Brassica rapa subsp. pekinensis clone KBrH102C07,... 36 5.4 5
(AL672304) Mouse DNA sequence from clone RP23-3G8 on chromos... 38 5.6 3
(CP000976) Borrelia duttonii Ly, complete genome. 34 5.7 13
(BX005264) Zebrafish DNA sequence from clone DKEY-63D22 in l... 44 5.7 1
(AL929116) Zebrafish DNA sequence from clone CH211-193C7. 44 5.7 1
(BV654553) S216P6308FF2.T0 Masuku Pan troglodytes troglodyte... 44 5.7 1
(BV390086) S243P669FH5.T0 CaliforniaCoyote Canis latrans STS... 44 5.7 1
(CT009697) Mouse DNA sequence from clone RP23-131H5 on chrom... 44 5.7 1
(AL929052) Mouse DNA sequence from clone RP23-464H11 on chro... 44 5.7 1
(AC144947) Mus musculus BAC clone RP23-319M19 from 1, comple... 44 5.7 1
(AC132411) Mus musculus BAC clone RP23-352O24 from chromosom... 44 5.7 1
(AC108437) Mus musculus chromosome 13, clone RP23-207N7, com... 44 5.7 1
(AC022472) Sequence of BAC T20H2 from Arabidopsis thaliana c... 44 5.7 1
(CS468836) Sequence 27 from Patent EP1748080. 44 5.7 1
(CS468835) Sequence 26 from Patent EP1748080. 44 5.7 1
(CS419313) Sequence 27 from Patent WO2006094836. 44 5.7 1
(CS419312) Sequence 26 from Patent WO2006094836. 44 5.7 1
(AX346393) Sequence 1464 from Patent WO0200928. 44 5.7 1
(EU350953) Homo sapiens catenin (cadherin-associated protein... 44 5.7 1
(AC010433) Homo sapiens chromosome 5 clone CTD-2202L20, comp... 44 5.7 1
(AC005572) Homo sapiens chromosome 5, PAC clone 248b21 (LBNL... 44 5.7 1
(AC160377) Bos taurus clone CH240-89J19, WORKING DRAFT SEQUE... 44 5.7 1
(AC118909) Rattus norvegicus clone CH230-33J18, *** SEQUENCI... 44 5.7 1
(AC084869) Homo sapiens chromosome RPCI-11 clone RP11-508E4,... 44 5.7 1
(CU469109) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.7 1
(CU407115) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.7 1
(CT990611) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.7 1
(AC192540) Spermophilus tridecemlineatus clone VMRC20-1L20, ... 44 5.7 1
(AC184384) Strongylocentrotus purpuratus clone R3-1033M17, W... 44 5.7 1
(AC181911) Strongylocentrotus purpuratus clone R3-1011P20, W... 44 5.7 1
(AC180568) Strongylocentrotus purpuratus clone R3-3094P13, W... 44 5.7 1
(BH051656) RPCI-24-319M17.TJ RPCI-24 Mus musculus genomic cl... 44 5.7 1
(ER284361) 1092343533939 Global-Ocean-Sampling_GS-34-01-01-1... 44 5.7 1
(EK379415) 1095469454504 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.7 1
(EK378635) 1095469450647 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.7 1
(EK368299) 1095469406672 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.7 1
(EJ826645) 1093017563330 Global-Ocean-Sampling_GS-30-02-01-1... 44 5.7 1
(EJ815294) 1093017512162 Global-Ocean-Sampling_GS-30-02-01-1... 44 5.7 1
(EJ317304) 1095403307899 Global-Ocean-Sampling_GS-27-01-01-1... 44 5.7 1
(EI827596) POTJ113TR Solanum tuberosum RHPOTKEY BAC ends Sol... 44 5.7 1
(EF942277) Mus musculus C57BL/6N IST12529C9BBF1 gene trap em... 44 5.7 1
(EF911344) Mus musculus C57BL/6N IST12348G8BBF1 gene trap em... 44 5.7 1
(DX532103) GH_MBb0025O13r GH_MBb Gossypium hirsutum genomic ... 44 5.7 1
(DU860392) 66682 Tomato HindIII BAC Library Solanum lycopers... 44 5.7 1
(AJ839145) Arabidopsis thaliana T-DNA flanking sequence, lef... 44 5.7 1
(DE363002) Bombyx mori genomic DNA, BAC clone:BET_606_G23. 44 5.7 1
(CW870093) sh2ad5-6.g_013.ab1 Whole-genome shotgun library o... 44 5.7 1
(CT246066) Sus scrofa genomic clone CH242-151I8, genomic sur... 44 5.7 1
(EE474582) BNYS2DCT_UP_015_F10_01MAR2005_070 Brassica napus ... 44 5.7 1
(DV671349) Pf-B935 P. fluviatilis liver cDNA library Perca f... 44 5.7 1
(DB090618) Homo sapiens cDNA clone TESTI4039625, 5' end, mRN... 44 5.7 1
(AM733429) Cucumis melo subsp. melo EST, clone CI_32-B02-M13R. 44 5.7 1
(AM730864) Cucumis melo subsp. melo EST, clone CI_49-C09-M13R. 44 5.7 1
(AM719956) Cucumis melo subsp. melo EST, clone PS_16-E09-M13R. 44 5.7 1
(CV041300) 4139073 BARC_3GAL chicken mixed tissue Gallus gal... 44 5.7 1
(BM902560) rc37c11.y1 Meloidogyne hapla egg pAMP1 v1 Meloido... 44 5.7 1
(BI506710) BB170030A20H01.5 Bee Brain Normalized/Subtracted ... 44 5.7 1
(FK913500) EST_lsal_evj_934580 lsalevj mixed_tissue_mixed_st... 44 5.7 1
(FK913499) EST_lsal_evj_949556 lsalevj mixed_tissue_mixed_st... 44 5.7 1
(FG562132) BN18DYSC_UP_110_D10_31MAR2008_074 BN18DYSC Brassi... 44 5.7 1
(FF316689) 280383316 Pea aphid whole body normalized full le... 44 5.7 1
(FF311719) 279381802 Pea aphid whole body normalized full le... 44 5.7 1
(AJ969074) Spiroplasma citri plasmid pSci6. 44 5.7 1
(EK404249) 1095469558796 Global-Ocean-Sampling_GS-31-01-01-1... 38 5.7 2
(DN050798) JGI_CABA6495.fwd NIH_XGC_tropKid1 Xenopus (Silura... 40 5.7 2
(AC214282) Populus trichocarpa clone POP018-K04, complete se... 36 5.8 4
(U16955) Plasmodium falciparum ATPase 2 gene, complete cds. 34 5.9 3
(CU326391) Medicago truncatula chromosome 5 clone mth2-182c4... 38 5.9 4
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont... 30 6.0 8
(CP000552) Prochlorococcus marinus str. MIT 9515, complete g... 32 6.1 13
(AC169086) Medicago truncatula clone mth2-150m9, WORKING DRA... 38 6.1 5
(DX378719) 3B_093_P06_FM1 Triticum aestivum chromosome 3B-sp... 38 6.1 2
(FF318521) 280396519 Pea aphid whole body normalized full le... 34 6.3 2
(BX470087) Zebrafish DNA sequence from clone CH211-202A10 in... 34 6.4 5
(AL049180) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 32 6.5 6
(FB571325) Sequence 192 from Patent EP1865317. 30 6.7 8
(AC084287) Mus Musculus S train C57BL6/J chromosome 1 BAC, ... 36 6.8 4
(BI814508) PfESToaa23g01.y1 Plasmodium falciparum 3D7 asexua... 36 6.9 2
(CR854966) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 6.9 5
(EL708414) CBSU617.fwd NICHD_XGC_tropLimb_m Xenopus (Siluran... 40 6.9 2
(EL708413) CBSU617.rev NICHD_XGC_tropLimb_m Xenopus (Siluran... 40 6.9 2
(FH584954) CHO_OF4409xd13r1.ab1 CHO_OF4 Nicotiana tabacum ge... 40 6.9 2
(CR548612) Paramecium tetraurelia macronuclear largest chrom... 34 7.2 12
(BQ527534) NISC_no22h03.x1 NICHD_XGC_Emb8 Xenopus (Silurana)... 40 7.2 2
(AP010589) Lotus japonicus genomic DNA, clone: LjT31L17, TM2... 36 7.3 6
(CU074337) S.lycopersicum DNA sequence from clone SL_MboI-14... 36 7.5 4
(AP006147) Lotus japonicus genomic DNA, chromosome 4, clone:... 32 7.5 6
(AC187418) Microcebus murinus clone CH257-168P5, WORKING DRA... 36 7.7 5
(CP000246) Clostridium perfringens ATCC 13124, complete genome. 36 7.7 15
(AC006214) Drosophila melanogaster, chromosome 2L, region 36... 36 7.8 4
(EB586962) AGENCOURT_51795169 D. ananassae EST Drosophila an... 34 7.8 3
(FH357639) CHO_OF4680xl20f1.ab1 CHO_OF4 Nicotiana tabacum ge... 30 7.9 3
(CT009521) M.truncatula DNA sequence from clone MTH2-81E13 o... 38 8.0 3
(AC204812) Lemur catta clone LB2-45F16, WORKING DRAFT SEQUEN... 38 8.2 4
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ... 32 8.3 8
(CX326110) JGI_XZT15025.rev NIH_XGC_tropTad5 Xenopus (Silura... 40 8.5 2
(AZ966590) 2M0237G07F Mouse 10kb plasmid UUGC2M library Mus ... 36 8.5 2
(DR842073) JGI_CABC11007.rev NIH_XGC_tropFat1 Xenopus (Silur... 40 8.5 2
(CX883630) JGI_CAAL22387.rev NIH_XGC_tropBrn4 Xenopus (Silur... 40 8.5 2
(CX855886) JGI_CAAL10814.rev NIH_XGC_tropBrn4 Xenopus (Silur... 40 8.7 2
(CN078093) EC2BBA14BF10.b1 Xenopus tropicalis xtbs plasmid l... 40 8.7 2
(CG322692) OG0AZ38TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 36 8.8 2
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s... 32 8.8 8
(CX580033) TTE00032273 Amplicon Express - Conjugative Form T... 34 8.9 2
(AC189307) Brassica rapa subsp. pekinensis clone KBrB033O04,... 38 8.9 7
(EL723530) CBSS5281.rev NICHD_XGC_tropSp1 Xenopus (Silurana)... 40 8.9 2
(EK262295) 1095462184739 Global-Ocean-Sampling_GS-31-01-01-1... 30 8.9 3
(DU487210) 1098421117760 CHORI-243 Ovis aries genomic clone ... 40 8.9 2
(CX384614) JGI_XZT64357.rev NIH_XGC_tropTad5 Xenopus (Silura... 40 8.9 2
(CN078094) EC2BBA14BF10.g1 Xenopus tropicalis xtbs plasmid l... 40 8.9 2
(CU914440) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 9.0 7
(AM461895) Vitis vinifera contig VV78X174809.17, whole genom... 38 9.0 2
(CX880271) JGI_CAAL20082.rev NIH_XGC_tropBrn4 Xenopus (Silur... 40 9.0 2
(CX906529) JGI_CAAM15993.rev NIH_XGC_tropTe3 Xenopus (Silura... 40 9.1 2
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g... 36 9.1 4
(EL632764) CBTC10834.rev NICHD_XGC_tropBone1 Xenopus (Silura... 40 9.1 2
(EB592018) AGENCOURT_51773172 D. ananassae EST Drosophila an... 36 9.1 2
(EB585674) AGENCOURT_51401623 D. ananassae EST Drosophila an... 34 9.1 3
(ET876799) CHO_OF422xg17f1.ab1 CHO_OF Nicotiana tabacum geno... 34 9.1 2
(CU972491) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 9.2 5
(FF574884) TTEF484TVB Tetrahymena thermophila conjugation cD... 34 9.3 2
(ET748073) CHO_OF287xk14r1.ab1 CHO_OF Nicotiana tabacum geno... 34 9.4 2
(AY863212) Rhizopus oryzae mitochondrion, complete genome. 36 9.7 4
(CX976749) JGI_CAAP9854.fwd NIH_XGC_tropInt1 Xenopus (Silura... 40 9.7 2
(FI291892) AdH1148-CPY2-N9TF AdH1 Arachis duranensis genomic... 38 9.7 2
(AE001368) Plasmodium falciparum 3D7 chromosome 2 section 5 ... 40 9.7 2
(EJ743125) 1092962033593 Global-Ocean-Sampling_GS-30-02-01-1... 36 9.7 2
(EI211465) DB__Ba0001E03.f DB__Ba Drosophila busckii genomic... 40 9.7 2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 32 9.8 12
(EK335037) 1095467038735 Global-Ocean-Sampling_GS-31-01-01-1... 38 9.9 2
(DN074525) JGI_CABD8341.rev NIH_XGC_tropLun1 Xenopus (Silura... 40 9.9 2
(EJ703100) 1092956044326 Global-Ocean-Sampling_GS-30-02-01-1... 40 10.0 2

>(AU072334) Dictyostelium discoideum slug cDNA, clone SSE218.
Length = 240

Score = 476 bits (240), Expect = e-130
Identities = 240/240 (100%)
Strand = Plus / Plus


Query: 1 aagaagtcaatcatttagtattattaaattgtattggtatcaatccagaacaagctaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagaagtcaatcatttagtattattaaattgtattggtatcaatccagaacaagctaatc 60


Query: 61 aattattaaataatttaatttcaattgatactttacatttaaattatagagacccaaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aattattaaataatttaatttcaattgatactttacatttaaattatagagacccaaact 120


Query: 121 ctcaagaattcatctttaaaattttatatgaaactaatagtagttgtcttagttttctat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctcaagaattcatctttaaaattttatatgaaactaatagtagttgtcttagttttctat 180


Query: 181 caagaattttcactgatataattcgtataaatgatatttattacattttaagaatggctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caagaattttcactgatataattcgtataaatgatatttattacattttaagaatggctc 240

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 676,029,474
Number of extensions: 46952102
Number of successful extensions: 4621287
Number of sequences better than 10.0: 313
Length of query: 567
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 544
Effective length of database: 99,442,330,388
Effective search space: 54096627731072
Effective search space used: 54096627731072
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.31
Homology vs Protein
Query= Contig-U04959-1 (Contig-U04959-1Q) /CSM_Contig/Contig-U04959-1Q.Seq.d
(567 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AE001362_157(AE001362|pid:none) Plasmodium falciparum 3D7 chromo... 36 0.82
AM269999_17(AM269999|pid:none) Aspergillus niger contig An02c004... 33 4.1
CP000939_3385(CP000939|pid:none) Clostridium botulinum B1 str. O... 33 5.3

>AE001362_157(AE001362|pid:none) Plasmodium falciparum 3D7
chromosome 2, complete sequence.
&AE001416_3(AE001416|pid:none)
Length = 1383

Score = 35.8 bits (81), Expect = 0.82
Identities = 28/102 (27%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Frame = +3

Query: 3 EVNHLVL-LNCIGINPEQANQLLNNLISIDTLHLNYRDPNSQEFIFKILYETN-SSCLSF 176
E+NH+ LN + I + + L NN ++L+ +Y+D +E +++ + N +SCLS
Sbjct: 47 ELNHIKRSLNELDIYTKNKSDLFNNYNLNESLNDSYKDKTFEELKSQLIKQKNLNSCLSL 106

Query: 177 LSRIFTDIIRINDIYYILRMAPNLKELDFDICIDNIIYQLEL 302
++ + I++N+++ LK+ +F+ I+N I ++EL
Sbjct: 107 --KLKSIHIKLNNLF--------LKKNEFEKTINNKIKEIEL 138

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 472,695,212
Number of extensions: 6467308
Number of successful extensions: 14021
Number of sequences better than 10.0: 3
Number of HSP's gapped: 14018
Number of HSP's successfully gapped: 3
Length of query: 189
Length of database: 1,061,185,681
Length adjustment: 121
Effective length of query: 68
Effective length of database: 665,703,473
Effective search space: 45267836164
Effective search space used: 45267836164
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.75 gvh: 0.52 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.14 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: peroxisomal
4.0 %: mitochondrial

>> prediction for Contig-U04959-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0