Contig-U04955-1
Contig ID Contig-U04955-1
Contig update 2001. 8.29
Contig sequence
>Contig-U04955-1 (Contig-U04955-1Q) /CSM_Contig/Contig-U04955-1Q.Seq.d
CAAATAAATCCCAATAAAAAAAATCAAATAGAAAAATGAAATTTACCAAA
TCATTATTATTATTAATTGTTGCAGTTTTTGCTTCTTCAAACGCAGCTGA
AACTTTCTCAAATTTTCAAGTTACAAATTCAGATGCCAACTCTCCATGTG
TAACAACACCAGTTGAATTAAAGGTTAATACTTGCCAATCTGCTTGTGGT
TCAATTCTTAATGTATTACCAGTGACCGGTTCAACTTCAAAGTTTACATT
TAATCAATTTGGTGCTCAAGATACAAAATGTGCTGCAACTCCTACTTCTT
CAAATGAATTCACTTGTGTAGATGGTAAATCAAAAGTTGCAATTGGTACT
ACAACATACTCAGTTGTTTGTGTTCCAGATAAAACAAACTCTTCAGAGTC
TGACTCTTCTGATTCTACCAGAATTGGTGCTAGTTTTGCTCTTGCTGCCT
CTGTTTTACTCTCAATGTTAGCTATATAAAAAACAAAAAAAACAAATAAA
TAAATTAAATTAATTTTCCACACTCTCATT

Gap no gap
Contig length 530
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 4861622
End point 4861092
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U04955
List of clone(s)

est1=SSE173E,1,531
Translated Amino Acid sequence
nksq*KKSNRKMKFTKSLLLLIVAVFASSNAAETFSNFQVTNSDANSPCVTTPVELKVNT
CQSACGSILNVLPVTGSTSKFTFNQFGAQDTKCAATPTSSNEFTCVDGKSKVAIGTTTYS
VVCVPDKTNSSESDSSDSTRIGASFALAASVLLSMLAI*ktkktnk*iklifhtli


Translated Amino Acid sequence (All Frames)
Frame A:
qinpnkknqiek*nlpnhyyy*llqflllqtqlklsqifklqiqmptlhv*qhqln*rli
lanllvvqflmyyq*pvqlqslhlinlvlkiqnvlqllllqmnslv*mvnqklqlvlqht
qlfvfqikqtlqsltllilpelvlvllllplfysqc*lykkqkkqinkln*fstls


Frame B:
k*ipikkik*kneiyqiiiiinccsfcffkrs*nflkfssykfrcqlsmcnnts*ikg*y
lpiclwfns*citsdrfnfkvyi*siwcsrykmccnsyffk*ihlcrw*ikscnwyynil
sclcsr*nklfrv*lf*fyqnwc*fcscclcftlnvsyiknkknk*in*infphsh


Frame C:
nksq*KKSNRKMKFTKSLLLLIVAVFASSNAAETFSNFQVTNSDANSPCVTTPVELKVNT
CQSACGSILNVLPVTGSTSKFTFNQFGAQDTKCAATPTSSNEFTCVDGKSKVAIGTTTYS
VVCVPDKTNSSESDSSDSTRIGASFALAASVLLSMLAI*ktkktnk*iklifhtli


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U04955-1 (Contig-U04955-1Q)
/CSM_Contig/Contig-U04955-1Q.Seq.d
(530 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U04955-1 (Contig-U04955-1Q) /CSM_Contig/Conti... 900 0.0
Contig-U07548-1 (Contig-U07548-1Q) /CSM_Contig/Conti... 44 2e-04
Contig-U11140-1 (Contig-U11140-1Q) /CSM_Contig/Conti... 42 6e-04
Contig-U11865-1 (Contig-U11865-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U11424-1 (Contig-U11424-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U06836-1 (Contig-U06836-1Q) /CSM_Contig/Conti... 40 0.002
Contig-U11126-1 (Contig-U11126-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U09887-1 (Contig-U09887-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U09342-1 (Contig-U09342-1Q) /CSM_Contig/Conti... 38 0.009
Contig-U09131-1 (Contig-U09131-1Q) /CSM_Contig/Conti... 38 0.009

>Contig-U04955-1 (Contig-U04955-1Q) /CSM_Contig/Contig-U04955-1Q.Seq.d
Length = 530

Score = 900 bits (454), Expect = 0.0
Identities = 454/454 (100%)
Strand = Plus / Plus


Query: 24 tcaaatagaaaaatgaaatttaccaaatcattattattattaattgttgcagtttttgct 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24 tcaaatagaaaaatgaaatttaccaaatcattattattattaattgttgcagtttttgct 83


Query: 84 tcttcaaacgcagctgaaactttctcaaattttcaagttacaaattcagatgccaactct 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 tcttcaaacgcagctgaaactttctcaaattttcaagttacaaattcagatgccaactct 143


Query: 144 ccatgtgtaacaacaccagttgaattaaaggttaatacttgccaatctgcttgtggttca 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ccatgtgtaacaacaccagttgaattaaaggttaatacttgccaatctgcttgtggttca 203


Query: 204 attcttaatgtattaccagtgaccggttcaacttcaaagtttacatttaatcaatttggt 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 attcttaatgtattaccagtgaccggttcaacttcaaagtttacatttaatcaatttggt 263


Query: 264 gctcaagatacaaaatgtgctgcaactcctacttcttcaaatgaattcacttgtgtagat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctcaagatacaaaatgtgctgcaactcctacttcttcaaatgaattcacttgtgtagat 323


Query: 324 ggtaaatcaaaagttgcaattggtactacaacatactcagttgtttgtgttccagataaa 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggtaaatcaaaagttgcaattggtactacaacatactcagttgtttgtgttccagataaa 383


Query: 384 acaaactcttcagagtctgactcttctgattctaccagaattggtgctagttttgctctt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acaaactcttcagagtctgactcttctgattctaccagaattggtgctagttttgctctt 443


Query: 444 gctgcctctgttttactctcaatgttagctatat 477
||||||||||||||||||||||||||||||||||
Sbjct: 444 gctgcctctgttttactctcaatgttagctatat 477


Score = 75.8 bits (38), Expect = 4e-14
Identities = 38/38 (100%)
Strand = Plus / Plus


Query: 493 caaataaataaattaaattaattttccacactctcatt 530
||||||||||||||||||||||||||||||||||||||
Sbjct: 493 caaataaataaattaaattaattttccacactctcatt 530


>Contig-U07548-1 (Contig-U07548-1Q) /CSM_Contig/Contig-U07548-1Q.Seq.d
Length = 893

Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Minus


Query: 53 attattattattaattgttgcagttt 78
|||||||||||||||||||| |||||
Sbjct: 586 attattattattaattgttgaagttt 561


Score = 28.2 bits (14), Expect = 9.0
Identities = 17/18 (94%)
Strand = Plus / Minus


Query: 48 aaatcattattattatta 65
|||| |||||||||||||
Sbjct: 627 aaattattattattatta 610


>Contig-U11140-1 (Contig-U11140-1Q) /CSM_Contig/Contig-U11140-1Q.Seq.d
Length = 2231

Score = 42.1 bits (21), Expect = 6e-04
Identities = 21/21 (100%)
Strand = Plus / Minus


Query: 49 aatcattattattattaattg 69
|||||||||||||||||||||
Sbjct: 120 aatcattattattattaattg 100


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,326
Number of Sequences: 6905
Number of extensions: 24326
Number of successful extensions: 8991
Number of sequences better than 10.0: 1165
length of query: 530
length of database: 5,674,871
effective HSP length: 16
effective length of query: 514
effective length of database: 5,564,391
effective search space: 2860096974
effective search space used: 2860096974
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7. 5
Homology vs DNA
Query= Contig-U04955-1 (Contig-U04955-1Q) /CSM_Contig/Contig-U04955-1Q.Seq.d
(530 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU037686) Dictyostelium discoideum slug cDNA, clone SSE173. 900 0.0 3
(AC005850) Arabidopsis thaliana chromosome I BAC T25B24 geno... 46 0.017 2
(AC160826) Xenopus tropicalis BAC clone ISB1-175O7 containin... 36 0.051 5
(AL212522) Tetraodon nigroviridis genome survey sequence T7 ... 50 0.086 1
(AC213183) Chlorocebus aethiops clone CH252-502M22, WORKING ... 42 0.10 2
(AC211806) Populus trichocarpa clone POP094-K03, complete se... 36 0.13 5
(AC218536) Bos taurus clone CH240-312K11, WORKING DRAFT SEQU... 40 0.13 2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 36 0.15 6
(DT791355) 126494320 TL1 Tribolium castaneum cDNA clone 34M2... 40 0.18 2
(CT009529) Human DNA sequence *** SEQUENCING CANCELLED *** f... 40 0.19 5
(AU269643) Dictyostelium discoideum vegetative cDNA clone:VS... 36 0.21 2
(BX005277) Zebrafish DNA sequence from clone CH211-167H2. 46 0.21 3
(AU269642) Dictyostelium discoideum vegetative cDNA clone:VS... 36 0.22 2
(AM428664) Vitis vinifera contig VV78X240066.3, whole genome... 40 0.27 2
(AC155842) Mus musculus 6 BAC RP24-122N23 (Roswell Park Canc... 40 0.33 3
(CR524828) Zebrafish DNA sequence from clone CH211-22G2 in l... 48 0.34 1
(CR352310) Zebrafish DNA sequence from clone CH211-254E10 in... 48 0.34 1
(CR318664) Zebrafish DNA sequence from clone CH211-59L22 in ... 48 0.34 1
(AC121523) Mus musculus chromosome 18, clone RP24-92N23, com... 48 0.34 1
(AC102432) Mus musculus chromosome 19, clone RP24-114A21, co... 48 0.34 1
(AM442803) Vitis vinifera contig VV79X000787.1, whole genome... 48 0.34 1
(CQ870290) Sequence 711 from Patent WO2004074320. 48 0.34 1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 48 0.34 1
(AC167465) Mus musculus chromosome 7 clone RP23-469P8 map 7,... 48 0.34 1
(AC163103) Mus musculus chromosome 19 clone RP23-126N2 map 1... 48 0.34 1
(FG296264) 1108770747315 New World Screwworm Larvae 9387 EST... 48 0.34 1
(AC171131) Helobdella robusta clone CH306-1A2, complete sequ... 38 0.42 3
(AC171127) Helobdella robusta clone CH306-1A1, complete sequ... 38 0.42 3
(AM472011) Vitis vinifera contig VV78X063730.5, whole genome... 42 0.43 2
(AC161620) Pan troglodytes BAC clone CH251-232H7 from chromo... 40 0.51 2
(CU651677) Zebrafish DNA sequence from clone CH73-307J4 in l... 42 0.53 4
(AB284548) Polistes japonicus gene for 16S rRNA, partial seq... 38 0.62 2
(CT509445) A BAC library has been constructed from cultivar ... 42 0.62 2
(CU076078) Zebrafish DNA sequence from clone CH73-309L7 in l... 46 0.64 4
(BX296554) Zebrafish DNA sequence from clone DKEYP-30G1 in l... 42 0.64 3
(EF175764) Romanomermis iyengari mitochondrion, complete gen... 42 0.81 2
(CU138551) Zebrafish DNA sequence from clone DKEY-250A21 in ... 40 0.85 4
(CR847894) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 40 0.91 6
(AC087319) Homo sapiens 12p BAC RP11-229F13 (Roswell Park Ca... 46 0.93 4
(AF070718) Homo sapiens BAC clone 529F11 from 8q21, complete... 44 1.0 3
(AC229859) Homo sapiens clone 529_F_11, *** SEQUENCING IN PR... 44 1.1 3
(BX004992) Zebrafish DNA sequence from clone CH211-120E13 in... 36 1.1 5
(AC223119) Bos taurus clone CH240-429I15, WORKING DRAFT SEQU... 40 1.2 3
(AC113308) Mus musculus clone RP23-437M19, WORKING DRAFT SEQ... 42 1.3 3
(BX950169) Zebrafish DNA sequence from clone CH211-203N19 in... 46 1.3 1
(BX321892) Zebrafish DNA sequence from clone DKEYP-21D12 in ... 46 1.3 1
(BX005391) Zebrafish DNA sequence from clone DKEY-91F15 in l... 46 1.3 1
(AL844152) Zebrafish DNA sequence from clone DKEY-37L7 in li... 46 1.3 1
(AM477518) Vitis vinifera, whole genome shotgun sequence, co... 46 1.3 1
(AM473236) Vitis vinifera contig VV78X247839.12, whole genom... 46 1.3 1
(AC005882) Arabidopsis thaliana chromosome I BAC T13M11 geno... 46 1.3 1
(EA317435) Sequence 6 from patent US 7294760. 46 1.3 1
(AX509255) Sequence 3950 from Patent WO0216655. 46 1.3 1
(AM269894) Eimeria tenella chromosome 1, ordered contigs. 46 1.3 1
(AF085570) Podisma pedestris clone SpA9t NADH dehydrogenase ... 46 1.3 1
(AC157617) Atelerix albiventris clone LB4-131H18, WORKING DR... 46 1.3 1
(CU468332) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.3 1
(AC220403) Bos taurus clone CH240-360A9, WORKING DRAFT SEQUE... 46 1.3 1
(AC168188) Atelerix albiventris clone LB4-43J15, WORKING DRA... 46 1.3 1
(DU015020) 292428 Tomato MboI BAC Library Solanum lycopersic... 46 1.3 1
(EH705578) CCIS4763.b1_F15.ab1 CCI(LMS) chicory Cichorium in... 46 1.3 1
(EH703094) CCIS1959.b1_M09.ab1 CCI(LMS) chicory Cichorium in... 46 1.3 1
(AM866303) Crassostrea gigas EST, 5' end sequence, clone cdn... 46 1.3 1
(CT025719) Zebrafish DNA sequence from clone CH73-117G24 in ... 40 1.4 3
(AL974309) Zebrafish DNA sequence from clone DKEY-29D5 in li... 42 1.6 3
(BX005346) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 1.8 7
(AC155671) Bos taurus clone CH240-41M5, WORKING DRAFT SEQUEN... 42 1.8 2
(AC019148) Homo sapiens chromosome 17 clone RP11-772K16, WOR... 44 1.9 2
(CU914733) H.numata DNA sequence from clone AEHN-38C19. 36 2.0 6
(CJ920020) Triticum aestivum cDNA clone:whchan10e15, 5' end. 36 2.1 2
(CJ920338) Triticum aestivum cDNA clone:whchan11e15, 5' end. 36 2.1 2
(AC013304) Homo sapiens clone RP11-4D24, WORKING DRAFT SEQUE... 34 2.1 5
(AM456752) Vitis vinifera contig VV78X137613.4, whole genome... 34 2.1 3
(CJ858252) Triticum aestivum cDNA clone:whsctal4l05, 5' end. 36 2.2 2
(AB081498) Mus musculus ELYS gene for putative transcription... 40 2.2 2
(EY271496) BF01054A2D03.f1 Normalized subtracted keck librar... 40 2.2 2
(EV433629) 211363097 NVP Nasonia vitripennis cDNA clone 235I... 38 2.3 2
(AL590110) Human DNA sequence from clone RP11-254O21 on chro... 36 2.3 3
(DT787727) 126462343 TL1 Tribolium castaneum cDNA clone 73I2... 38 2.4 2
(BX571952) Zebrafish DNA sequence from clone DKEY-35E8 in li... 44 2.5 5
(ES633507) NVPA978TR NVPA Nasonia vitripennis cDNA, mRNA seq... 36 2.5 2
(AC231241) Tupaia belangeri clone CH275-369P9, WORKING DRAFT... 36 2.8 3
(AY599563) Homo sapiens replication protein A1, 70kDa (RPA1)... 42 2.8 3
(CR812943) Zebrafish DNA sequence from clone DKEYP-80C12 in ... 36 2.8 6
(BX511094) Zebrafish DNA sequence from clone CH211-137G12 in... 34 2.8 4
(DQ013205) Triticum turgidum subsp. durum AP2 transcriptiona... 36 2.9 2
(AL845372) Zebrafish DNA sequence from clone DKEYP-113C1 in ... 42 3.0 2
(CU694206) Zebrafish DNA sequence from clone CH211-111J23 in... 42 3.0 2
(AC168167) Bos taurus clone CH240-231I13, WORKING DRAFT SEQU... 38 3.0 4
(EU197053) Triticum urartu DRF1.2 (DRF1) mRNA, complete cds. 36 3.1 2
(AP009774) Lotus japonicus genomic DNA, clone: LjT01F21, TM1... 44 3.1 2
(AC179652) Strongylocentrotus purpuratus clone R3-1024I10, W... 34 3.2 6
(DQ013204) Triticum turgidum subsp. durum AP2 transcriptiona... 36 3.3 2
(CU179655) Zebrafish DNA sequence from clone CH211-1J6. 40 3.4 5
(AC067743) Homo sapiens chromosome 10 clone RP11-441P16, com... 40 3.4 6
(CZ941216) 323255 Tomato EcoRI BAC Library Solanum lycopersi... 32 3.5 2
(AP002338) Homo sapiens genomic DNA, chromosome 11q clone:CT... 40 3.5 4
(AC116925) Dictyostelium discoideum chromosome 2 map 4189423... 32 3.6 4
(CU633924) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 3.7 4
(CT027828) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 3.7 3
(AL158072) Human DNA sequence from clone RP11-30O14 on chrom... 36 3.7 5
(CU019661) Zebrafish DNA sequence from clone DKEY-266H18 in ... 40 3.8 3
(AC013014) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 38 3.8 2
(AL954830) Mouse DNA sequence from clone RP23-12A10 on chrom... 40 3.9 2
(EF423889) Lucilia eximia isolate LeMM44 tRNA-Met gene, part... 36 3.9 2
(AC189743) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 38 3.9 2
(AC155774) Callithrix jacchus clone CH259-194M2, WORKING DRA... 40 4.0 3
(CR392001) Zebrafish DNA sequence from clone DKEY-70B24 in l... 42 4.1 3
(AC179777) Strongylocentrotus purpuratus clone R3-1015N09, W... 38 4.1 5
(CU928032) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 4.1 3
(DQ011890) Triticum turgidum subsp. durum DRF1.2 (DRF1) mRNA... 36 4.1 2
(AY781355) Triticum aestivum DREB transcription factor 4B (D... 36 4.1 2
(AC027528) Homo sapiens chromosome 11 clone RP11-369J16 map ... 34 4.1 7
(AL663010) Oryza sativa genomic DNA, chromosome 4, BAC clone... 42 4.1 2
(EA145891) Sequence 10206 from patent US 7214786. 36 4.2 2
(AY781356) Triticum aestivum DREB transcription factor 4C (D... 36 4.2 2
(CR848762) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 4.4 5
(CT573448) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 42 4.4 6
(AY781354) Triticum aestivum DREB transcription factor 4A (D... 36 4.5 2
(CA485576) WHE4320_D12_H24ZS Wheat meiotic anther cDNA libra... 32 4.6 3
(BM774620) ra95g04.y1 Meloidogyne incognita egg pAMP1 Bird M... 40 4.8 2
(CU759231) A BAC library has been constructed from PN40024 g... 38 5.0 2
(BX927195) Zebrafish DNA sequence from clone CH211-124E6 in ... 38 5.1 2
(AM436712) Vitis vinifera contig VV78X000830.2, whole genome... 42 5.2 2
(AL031391) Human DNA sequence from clone RP1-276K20 on chrom... 42 5.3 4
(CU469543) Zebrafish DNA sequence from clone CH73-290I17 in ... 44 5.3 1
(CR848746) Zebrafish DNA sequence from clone CH211-269K10 in... 44 5.3 1
(BX663508) Zebrafish DNA sequence from clone CH211-144B6 in ... 44 5.3 1
(BX663503) Zebrafish DNA sequence from clone CH211-136A13 in... 44 5.3 1
(BX004996) Zebrafish DNA sequence from clone CH211-268F23 in... 44 5.3 1
(AL844563) Zebrafish DNA sequence from clone DKEY-5O10 in li... 44 5.3 1
(BK001032) TPA_exp: Dictyostelium discoideum aldo-keto reduc... 44 5.3 1
(BV403342) S229P6123FB12.T0 GermanShepherd Canis familiaris ... 44 5.3 1
(BV281582) S232P6488RF4.T0 Beagle Canis familiaris STS genom... 44 5.3 1
(AL807801) Mouse DNA sequence from clone RP23-235A15 on chro... 44 5.3 1
(AL590626) Mouse DNA sequence from clone RP23-143O13 on chro... 44 5.3 1
(AC154367) Mus musculus BAC clone RP23-123N11 from 13, compl... 44 5.3 1
(AC154352) Mus musculus BAC clone RP24-545J11 from chromosom... 44 5.3 1
(AC138309) Mus musculus BAC clone RP23-250M10 from 13, compl... 44 5.3 1
(AC122782) Mus musculus chromosome 5, clone RP24-224N3, comp... 44 5.3 1
(AC113974) Mus musculus chromosome 18, clone RP23-140D3, com... 44 5.3 1
(AC110901) Mus musculus chromosome 13, clone RP24-165P9, com... 44 5.3 1
(CU475568) Medicago truncatula chromosome 5 clone mth2-61f16... 44 5.3 1
(AP007151) Aspergillus oryzae RIB40 genomic DNA, SC005. 44 5.3 1
(AM483709) Vitis vinifera, whole genome shotgun sequence, co... 44 5.3 1
(AM482914) Vitis vinifera contig VV78X034929.16, whole genom... 44 5.3 1
(AM451790) Vitis vinifera contig VV78X110173.13, whole genom... 44 5.3 1
(AM440864) Vitis vinifera contig VV78X029559.3, whole genome... 44 5.3 1
(AK110838) Oryza sativa Japonica Group cDNA clone:002-172-B0... 44 5.3 1
(AC149411) Phakopsora pachyrhizi clone JGIAFNA-69I17, comple... 44 5.3 1
(AB252663) Ipomoea purpurea IpIVS gene for bHLH transcriptio... 44 5.3 1
(GM883754) Sequence 98 from Patent WO2008137090. 44 5.3 1
(AC160563) Ornithorhynchus anatinus BAC clone OABb-456P24 fr... 44 5.3 1
(AC093712) Canis lupus familiaris clone RP81-229G11, complet... 44 5.3 1
(M24423) Haementaria officinalis antistasis mRNA, complete cds. 44 5.3 1
(DQ174335) Misumenops editus isolate 103 16S ribosomal RNA g... 44 5.3 1
(AL137001) Human DNA sequence from clone RP11-301J16 on chro... 44 5.3 1
(AL109751) Human DNA sequence from clone RP1-237H22 on chrom... 44 5.3 1
(AF404777) Homo sapiens phenylalanine hydroxylase (PAH) gene... 44 5.3 1
(AC210964) Homo sapiens FOSMID clone ABC12-46787900F17 from ... 44 5.3 1
(AC132872) Homo sapiens chromosome 17, clone RP13-516M14, co... 44 5.3 1
(AC079967) Homo sapiens chromosome 8, clone RP11-1058B10, co... 44 5.3 1
(AC079865) Homo sapiens 12 BAC RP11-745I6 (Roswell Park Canc... 44 5.3 1
(AC079257) Homo sapiens BAC clone RP11-367I6 from 4, complet... 44 5.3 1
(AC069227) Homo sapiens 12 BAC RP11-478G16 (Roswell Park Can... 44 5.3 1
(AC007923) Homo sapiens chromosome 17, clone RP11-805L22, co... 44 5.3 1
(AC003951) Homo sapiens chromosome 5, P1 clone 962c5 (LBNL H... 44 5.3 1
(AC157246) Atelerix albiventris clone LB4-476K1, WORKING DRA... 44 5.3 1
(AC155208) Atelerix albiventris clone LB4-364E23, WORKING DR... 44 5.3 1
(AC153758) Sphenodon punctatus clone VMRC12-460J19, WORKING ... 44 5.3 1
(AC134963) Canis lupus familiaris clone RP81-262L7, WORKING ... 44 5.3 1
(AC131550) Rattus norvegicus clone CH230-11F21, *** SEQUENCI... 44 5.3 1
(AC126116) Rattus norvegicus clone CH230-3D21, WORKING DRAFT... 44 5.3 1
(AC122712) Homo sapiens chromosome 5 clone RP11-35J11, WORKI... 44 5.3 1
(AC120702) Rattus norvegicus clone CH230-145L2, *** SEQUENCI... 44 5.3 1
(AC110441) Rattus norvegicus clone CH230-312B14, *** SEQUENC... 44 5.3 1
(AC109090) Rattus norvegicus clone CH230-202L11, *** SEQUENC... 44 5.3 1
(AC096005) Rattus norvegicus clone CH230-12B5, WORKING DRAFT... 44 5.3 1
(CU915498) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.3 1
(CU633921) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.3 1
(AC084737) Homo sapiens chromosome UL clone RP13-516M14, WOR... 44 5.3 1
(AC073157) Homo sapiens chromosome 3 clone RP11-230A12, WORK... 44 5.3 1
(AC060790) Homo sapiens chromosome 18 clone RP11-202G10 map ... 44 5.3 1
(AL606478) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 44 5.3 1
(AC232037) Solanum tuberosum strain Diploid genotype RH89-03... 44 5.3 1
(AC209526) Solanum tuberosum chromosome 1 clone RH203E21, **... 44 5.3 1
(AC206380) Tupaia belangeri clone CH275-281K5, WORKING DRAFT... 44 5.3 1
(AC191179) Cavia porcellus clone CH234-171N19, WORKING DRAFT... 44 5.3 1
(AC173855) Bos taurus clone CH240-527E4, WORKING DRAFT SEQUE... 44 5.3 1
(AC171761) Atelerix albiventris clone LB4-370D7, WORKING DRA... 44 5.3 1
(AC171759) Atelerix albiventris clone LB4-320C20, WORKING DR... 44 5.3 1
(AC171479) Bos taurus clone CH240-264C19, WORKING DRAFT SEQU... 44 5.3 1
(BH131008) ENTNM19TR Entamoeba histolytica Sheared DNA Entam... 44 5.3 1
(AQ582048) RPCI-11-460H1.TV RPCI-11 Homo sapiens genomic clo... 44 5.3 1
(AQ424838) CITBI-E1-2565B4.TR CITBI-E1 Homo sapiens genomic ... 44 5.3 1
(AQ388802) RPCI11-144M10.TJ RPCI-11 Homo sapiens genomic clo... 44 5.3 1
(FI230498) CccaBa060-F1TV CccABa Cajanus cajan genomic clone... 44 5.3 1
(FH992660) CHO_OF6851xf18r1.ab1 CHO_OF6 Nicotiana tabacum ge... 44 5.3 1
(AQ320140) RPCI11-101J3.TJ RPCI-11 Homo sapiens genomic clon... 44 5.3 1
(AQ099846) HS_3049_B2_G04_MF CIT Approved Human Genomic Sper... 44 5.3 1
(AL743100) Danio rerio genomic clone DKEY-7A23, genomic surv... 44 5.3 1
(EI692347) SB_BBd27-G13.F SB_BBd Sorghum bicolor genomic 5',... 44 5.3 1
(EI491826) PV_GBa0108E05.r PV_GBa Phaseolus vulgaris genomic... 44 5.3 1
(EI488512) PV_GBa0103M11.r PV_GBa Phaseolus vulgaris genomic... 44 5.3 1
(EI353023) GM_WBc0102J17.f GM_WBc Glycine max genomic clone ... 44 5.3 1
(ED453615) AUAC-aae73g11.g1 Ascaris suum whole genome shotgu... 44 5.3 1
(ED120777) AUAC-aan22e08.g1 Ascaris suum whole genome shotgu... 44 5.3 1
(DU108523) JBnY036D02F Brassica napus BAC library JBnY Brass... 44 5.3 1
(CW711992) AIAA-aab68f02.b1 Ancylostoma caninum whole genome... 44 5.3 1
(CW428630) fsbb001f141h03f0 Sorghum methylation filtered lib... 44 5.3 1
(CW067506) 104_315_10524321_115_30125 Sorghum methylation fi... 44 5.3 1
(CT197993) Sus scrofa genomic clone CH242-195N6, genomic sur... 44 5.3 1
(AG765114) Macaca fuscata fuscata DNA, clone: MSB2-236H23_R,... 44 5.3 1
(CE618325) tigr-gss-dog-17000327765550 Dog Library Canis lup... 44 5.3 1
(BX195886) Danio rerio genomic clone DKEY-207B10, genomic su... 44 5.3 1
(AV464349) Mus musculus cDNA, Abe mouse ES cell cDNA library... 44 5.3 1
(AV464316) Mus musculus cDNA, Abe mouse ES cell cDNA library... 44 5.3 1
(EB830434) 6725585 KZ58 Danio rerio cDNA clone 2543432, mRNA... 44 5.3 1
(EB500930) 1099435305235 12-DrosW-norm-1P5Kb Drosophila will... 44 5.3 1
(EB499521) 1099435276278 12-DrosW-norm-1P5Kb Drosophila will... 44 5.3 1
(EB490274) 1099341360043 12-DrosW-norm-1P5Kb Drosophila will... 44 5.3 1
(EB351609) CNS003-F-026385-501 Non-Normalized CNS library Ap... 44 5.3 1
(EB348962) CNSN01-F-102981-501 Normalized CNS library (juven... 44 5.3 1
(EB348392) CNSN01-F-086907-501 Normalized CNS library (juven... 44 5.3 1
(EB345068) CNSN01-F-045977-501 Normalized CNS library (juven... 44 5.3 1
(EB338804) CNSN01-F-147279-501 Normalized CNS library (juven... 44 5.3 1
(EB327695) CNSN01-F-107046-501 Normalized CNS library (juven... 44 5.3 1
(EB303938) CNSN01-F-063211-501 Normalized CNS library (juven... 44 5.3 1
(EB294783) CNSN01-F-045434-501 Normalized CNS library (juven... 44 5.3 1
(EB283298) CNSN01-F-002926-501 Normalized CNS library (juven... 44 5.3 1
(EB279944) CNSN01-F-034292-501 Normalized CNS library (juven... 44 5.3 1
(EB276611) CNSN01-F-094729-501 Normalized CNS library (juven... 44 5.3 1
(EB274165) CNSN01-F-091368-501 Normalized CNS library (juven... 44 5.3 1
(EB260206) CNSN01-C-003878-501 Normalized CNS library (juven... 44 5.3 1
(EB254454) CNSN01-C-006648-501 Normalized CNS library (juven... 44 5.3 1
(DY677846) TT1AU08TV Tetrahymena thermophila EST library str... 44 5.3 1
(DY314151) AGENCOURT_66949858 NIH_MGC_366 Rattus norvegicus ... 44 5.3 1
(AU270807) Dictyostelium discoideum vegetative cDNA clone:VS... 44 5.3 1
(AU270740) Dictyostelium discoideum vegetative cDNA clone:VS... 44 5.3 1
(AU270478) Dictyostelium discoideum vegetative cDNA clone:VS... 44 5.3 1
(AU270023) Dictyostelium discoideum vegetative cDNA clone:VS... 44 5.3 1
(AU269129) Dictyostelium discoideum vegetative cDNA clone:VS... 44 5.3 1
(AU268799) Dictyostelium discoideum vegetative cDNA clone:VS... 44 5.3 1
(AU268261) Dictyostelium discoideum vegetative cDNA clone:VS... 44 5.3 1
(AU267775) Dictyostelium discoideum vegetative cDNA clone:VS... 44 5.3 1
(AU267240) Dictyostelium discoideum vegetative cDNA clone:VS... 44 5.3 1
(AU266782) Dictyostelium discoideum vegetative cDNA clone:VS... 44 5.3 1
(AU266675) Dictyostelium discoideum vegetative cDNA clone:VS... 44 5.3 1
(AU266368) Dictyostelium discoideum vegetative cDNA clone:VS... 44 5.3 1
(AU263971) Dictyostelium discoideum vegetative cDNA clone:VS... 44 5.3 1
(AU075098) Dictyostelium discoideum slug cDNA, clone SSA241. 44 5.3 1
(AU071563) Dictyostelium discoideum slug cDNA, clone SSB805. 44 5.3 1
(CT687608) Danio rerio EST, clone ZF_mu_214j19 5'. 44 5.3 1
(CI222201) Oryza sativa Japonica Group cDNA, clone: 040-M011... 44 5.3 1
(CD342294) EtESTee50e10.y1 Eimeria tenella M5-6 Excised cDNA... 44 5.3 1
(BX555517) Glossina morsitans morsitans (Tseatse fly) EST fr... 44 5.3 1
(BJ417158) Dictyostelium discoideum cDNA clone:ddv29l16, 5' ... 44 5.3 1
(BJ417030) Dictyostelium discoideum cDNA clone:ddv29m06, 5' ... 44 5.3 1
(BJ417000) Dictyostelium discoideum cDNA clone:ddv29f05, 5' ... 44 5.3 1
(BJ416740) Dictyostelium discoideum cDNA clone:ddv27k04, 5' ... 44 5.3 1
(BJ413845) Dictyostelium discoideum cDNA clone:ddv17l02, 5' ... 44 5.3 1
(FM983659) Glossina morsitans morsitans EST, clone GMsg145b0... 44 5.3 1
(FM983356) Glossina morsitans morsitans EST, clone GMsg161b0... 44 5.3 1
(FG540791) OtL020H12_021607d Onthophagus taurus larval libra... 44 5.3 1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 36 5.3 7
(AC160018) Mus musculus chromosome 8 clone RP23-109G15, *** ... 34 5.4 5
(AC216918) Populus trichocarpa clone POP070-F20, complete se... 36 5.4 3
(AC145170) Homo sapiens chromosome 16 clone RP11-346C21, WOR... 36 5.4 4
(AC169823) Macaca mulatta clone CH250-155H21, WORKING DRAFT ... 38 5.5 2
(AM463663) Vitis vinifera contig VV78X009806.7, whole genome... 38 5.5 3
(AC197269) Zea mays chromosome 4 clone CH201-188L6; ZMMBBc01... 40 5.5 2
(CU467840) Zebrafish DNA sequence from clone CH1073-167I5 in... 40 5.5 2
(BX276187) Zebrafish DNA sequence from clone DKEY-207F13 in ... 38 5.7 5
(EH011128) USDA-FP_184158 Lysiphlebus testaceipes adult whol... 38 5.7 2
(BX255911) Zebrafish DNA sequence from clone DKEY-274C14 in ... 36 5.7 4
(BX649405) Zebrafish DNA sequence from clone DKEY-190M16 in ... 40 5.8 5
(CR855229) Oryza sativa genomic DNA, chromosome 4, BAC clone... 42 5.8 2
(AM468259) Vitis vinifera contig VV78X075654.8, whole genome... 32 5.9 3
(BM880874) rb19c02.y1 Meloidogyne incognita egg pAMP1 Bird M... 40 5.9 2
(AC225474) Medicago truncatula clone mth2-189l10, WORKING DR... 38 5.9 6
(AC166612) Oryctolagus cuniculus clone LB1-297I13, WORKING D... 38 5.9 2
(BX005189) Mouse DNA sequence from clone RP23-170L24 on chro... 34 6.1 6
(DX436739) BE1079_M06_R IASMA L1 HindIII BAC library Vitis v... 34 6.1 2
(AC154598) Mus musculus BAC clone RP23-356P6 from 14, comple... 38 6.1 6
(AC196912) Papio anubis clone RP41-417E23, WORKING DRAFT SEQ... 38 6.1 2
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 34 6.1 7
(AM452782) Vitis vinifera contig VV78X025247.15, whole genom... 42 6.2 2
(GE385822) 293705634 Nasonia vitripennis Female Pupae Nasoni... 40 6.2 2
(AC100120) Mus musculus chromosome 10, clone RP23-40I1, comp... 40 6.2 3
(CU829426) A BAC library has been constructed from PN40024 g... 38 6.3 2
(AC179191) Strongylocentrotus purpuratus clone R3-4019E5, WO... 38 6.4 3
(CR376752) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 6.4 5
(BX901922) Zebrafish DNA sequence from clone DKEY-33C12 in l... 38 6.5 3
(AC220756) Bos taurus clone CH240-347D23, WORKING DRAFT SEQU... 38 6.7 2
(BX890597) Zebrafish DNA sequence from clone DKEY-65F8. 36 6.9 5
(EH015791) USDA-FP_188357 Lysiphlebus testaceipes adult whol... 38 6.9 2
(CE260623) tigr-gss-dog-17000346480857 Dog Library Canis lup... 38 6.9 2
(AB049067) Dictyostelium discoideum gene for ammonium transp... 38 7.0 2
(CR753832) Zebrafish DNA sequence from clone DKEY-71C18 in l... 42 7.1 3
(EH014916) USDA-FP_187569 Lysiphlebus testaceipes adult whol... 38 7.3 2
(AC168895) Bos taurus clone CH240-208N11, WORKING DRAFT SEQU... 42 7.4 2
(AC168917) Bos taurus clone CH240-234L10, WORKING DRAFT SEQU... 38 7.5 5
(BY755478) Mus musculus adult male vesicular gland cDNA, RIK... 36 7.6 2
(AC202362) Medicago truncatula clone mth2-62j19, WORKING DRA... 40 7.6 5
(EI716098) 2B421008L14TR BAC library from breast tumor sampl... 38 7.7 2
(ET197316) MUGQ_CH252P396A13Sp6_CP752_063 CHORI-252 Vervet M... 34 7.8 2
(EJ378355) 1092963751874 Global-Ocean-Sampling_GS-28-01-01-1... 34 7.9 3
(AF118151) Dictyostelium discoideum SNF1/AMP-activated kinas... 38 7.9 2
(AC012018) Homo sapiens 12 BAC RP11-691B3 (Roswell Park Canc... 40 8.0 5
(CR354373) Zebrafish DNA sequence from clone DKEY-75C23 in l... 34 8.0 4
(AL773565) Mouse DNA sequence from clone RP23-76A20 on chrom... 38 8.1 3
(CU138544) Zebrafish DNA sequence from clone CH211-180P3 in ... 40 8.1 3
(AC233810) Choloepus hoffmanni clone CH281-230F4, WORKING DR... 36 8.2 5
(AL358354) Human DNA sequence from clone RP11-522D2 on chrom... 36 8.2 3
(CT519074) A BAC library has been constructed from cultivar ... 34 8.4 2
(BX143598) Danio rerio genomic clone DKEY-104F22, genomic su... 40 8.6 2
(CT571263) Medicago truncatula chromosome 5 clone mte1-7c20,... 40 8.6 6
(AC115581) Dictyostelium discoideum chromosome 2 map complem... 36 8.7 4
(CV712917) UCRCS08_0002B05_f Parent Washington Navel Orange ... 34 8.7 2
(EU089819) Triticum turgidum subsp. durum cultivar Ciccio AP... 36 8.8 2
(EI865147) CAH1-26I8TR CAA1Ba Cicer arietinum genomic clone ... 34 9.0 2
(CU855563) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 9.1 6
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 36 9.1 4
(EU938372) Acrida willemsei mitochondrion, complete genome. 42 9.3 2
(EA102721) Sequence 104 from patent US 7195870. 38 9.3 2
(AX323628) Sequence 116 from Patent WO0192565. 38 9.3 2
(AX277941) Sequence 104 from Patent WO0177375. 38 9.3 2
(GM995976) Sequence 116 from Patent EP2014776. 38 9.3 2
(DT788623) 126501952 TL1 Tribolium castaneum cDNA clone 51E1... 38 9.3 2
(ED434419) AUAC-aah11a01.b1 Ascaris suum whole genome shotgu... 34 9.3 2
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 9.5 4
(AL035477) Plasmodium falciparum MAL4P4. 34 9.5 5
(BX004854) Zebrafish DNA sequence from clone CH211-271I22 in... 38 9.6 4
(DT776689) 127467640 TH1 Tribolium castaneum cDNA clone 122E... 38 9.7 2
(BX914195) Zebrafish DNA sequence from clone CH211-170L6 in ... 30 9.7 2
(DU968923) 377989 Tomato MboI BAC Library Solanum lycopersic... 36 9.7 2
(CU571400) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 9.8 4
(AC111390) Rattus norvegicus clone CH230-143P1, *** SEQUENCI... 40 9.9 4
(CU469149) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 10.0 3

>(AU037686) Dictyostelium discoideum slug cDNA, clone SSE173.
Length = 531

Score = 900 bits (454), Expect(3) = 0.0
Identities = 454/454 (100%)
Strand = Plus / Plus


Query: 24 tcaaatagaaaaatgaaatttaccaaatcattattattattaattgttgcagtttttgct 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24 tcaaatagaaaaatgaaatttaccaaatcattattattattaattgttgcagtttttgct 83


Query: 84 tcttcaaacgcagctgaaactttctcaaattttcaagttacaaattcagatgccaactct 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 tcttcaaacgcagctgaaactttctcaaattttcaagttacaaattcagatgccaactct 143


Query: 144 ccatgtgtaacaacaccagttgaattaaaggttaatacttgccaatctgcttgtggttca 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ccatgtgtaacaacaccagttgaattaaaggttaatacttgccaatctgcttgtggttca 203


Query: 204 attcttaatgtattaccagtgaccggttcaacttcaaagtttacatttaatcaatttggt 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 attcttaatgtattaccagtgaccggttcaacttcaaagtttacatttaatcaatttggt 263


Query: 264 gctcaagatacaaaatgtgctgcaactcctacttcttcaaatgaattcacttgtgtagat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctcaagatacaaaatgtgctgcaactcctacttcttcaaatgaattcacttgtgtagat 323


Query: 324 ggtaaatcaaaagttgcaattggtactacaacatactcagttgtttgtgttccagataaa 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggtaaatcaaaagttgcaattggtactacaacatactcagttgtttgtgttccagataaa 383


Query: 384 acaaactcttcagagtctgactcttctgattctaccagaattggtgctagttttgctctt 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acaaactcttcagagtctgactcttctgattctaccagaattggtgctagttttgctctt 443


Query: 444 gctgcctctgttttactctcaatgttagctatat 477
||||||||||||||||||||||||||||||||||
Sbjct: 444 gctgcctctgttttactctcaatgttagctatat 477

Score = 75.8 bits (38), Expect(3) = 0.0
Identities = 38/38 (100%)
Strand = Plus / Plus


Query: 493 caaataaataaattaaattaattttccacactctcatt 530
||||||||||||||||||||||||||||||||||||||
Sbjct: 493 caaataaataaattaaattaattttccacactctcatt 530

Score = 30.2 bits (15), Expect(3) = 0.0
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 1 caaataaatcccaat 15
|||||||||||||||
Sbjct: 1 caaataaatcccaat 15

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 716,699,319
Number of extensions: 56558082
Number of successful extensions: 7693076
Number of sequences better than 10.0: 344
Length of query: 530
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 507
Effective length of database: 99,442,330,388
Effective search space: 50417261506716
Effective search space used: 50417261506716
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.31
Homology vs Protein
Query= Contig-U04955-1 (Contig-U04955-1Q) /CSM_Contig/Contig-U04955-1Q.Seq.d
(530 letters)

Database: nrp_A
3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q54LC3) RecName: Full=Ponticulin-like protein C2; Flags: Precur... 235 6e-61
(Q54LH6) RecName: Full=Ponticulin-like protein F; Flags: Precurs... 62 1e-08
(Q54M25) RecName: Full=Ponticulin-like protein B; Flags: Precurs... 57 2e-07
(Q54SJ8) RecName: Full=Ponticulin-like protein D; Flags: Precurs... 49 6e-05
(Q54LM2) RecName: Full=Ponticulin-like protein H; Flags: Precurs... 49 8e-05
(Q54T57) RecName: Full=Ponticulin-like protein M; Flags: Precurs... 42 0.013
CP000767_334(CP000767|pid:none) Campylobacter curvus 525.92, com... 38 0.18
(Q54IM7) RecName: Full=Ponticulin-like protein L; Flags: Precurs... 37 0.41
FB912566_1(FB912566|pid:none) Sequence 131839 from Patent WO2008... 34 2.0
(P38739) RecName: Full=Cell wall integrity and stress response c... 34 2.0
L04971_1(L04971|pid:none) Trypanosoma brucei variant surface gly... 34 2.6
(P21840) RecName: Full=Variant surface glycoprotein MVAT5; ... 34 2.6
AF259553_1(AF259553|pid:none) Trypanosoma brucei metacyclic vari... 34 2.6
A45175(A45175) variant surface glycoprotein - Trypanosoma brucei... 34 2.6
(Q8WWQ3) RecName: Full=Mucin-5AC; AltName: Full=Mucin-5 subtype ... 33 4.5
FB912564_1(FB912564|pid:none) Sequence 131837 from Patent WO2008... 33 5.9
CP001114_2399(CP001114|pid:none) Deinococcus deserti VCD115, com... 32 7.6
BT080907_1(BT080907|pid:none) Caligus clemensi clone ccle-evs-51... 32 7.6
AE014134_846(AE014134|pid:none) Drosophila melanogaster chromoso... 32 7.6

>(Q54LC3) RecName: Full=Ponticulin-like protein C2; Flags:
Precursor;
Length = 147

Score = 235 bits (599), Expect = 6e-61
Identities = 118/131 (90%), Positives = 120/131 (91%)
Frame = +3

Query: 36 MKFTKSLLLLIVAVFASSNAAETFSNFQVTNSDANSPCVTTPVELKVNTCQSACGSILNV 215
MKFTK LLLLIVA+ ASSNAAETFSNFQVTNSDA+SPCVTTPVELKVNTCQSACGSILNV
Sbjct: 1 MKFTKPLLLLIVAIIASSNAAETFSNFQVTNSDASSPCVTTPVELKVNTCQSACGSILNV 60

Query: 216 LPVTGSTSKFTFNQFGAQDTKCAATPTSSNEFTCVDGKSKVAIGTTTYSVVCVPDKTNXX 395
LPVTGSTSKFTFNQFGAQDTKCAATPTSSNEFTCVDGKSKVAIGTTTYSVVCVPDKTN
Sbjct: 61 LPVTGSTSKFTFNQFGAQDTKCAATPTSSNEFTCVDGKSKVAIGTTTYSVVCVPDKTNSS 120

Query: 396 XXXXXXXTRIG 428
TRIG
Sbjct: 121 ESDSSDSTRIG 131

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 637,262,324
Number of extensions: 10434058
Number of successful extensions: 25366
Number of sequences better than 10.0: 19
Number of HSP's gapped: 25262
Number of HSP's successfully gapped: 23
Length of query: 176
Length of database: 1,061,185,681
Length adjustment: 120
Effective length of query: 56
Effective length of database: 668,971,921
Effective search space: 37462427576
Effective search space used: 37462427576
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.98 gvh: 0.81 alm: 0.28 top: -0.07 tms: 0.07 mit: 0.44 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 1.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 1.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

36.0 %: plasma membrane
32.0 %: extracellular, including cell wall
20.0 %: endoplasmic reticulum
12.0 %: Golgi

>> prediction for Contig-U04955-1 is pla

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0