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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04954-1
Contig ID Contig-U04954-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04954-1 (Contig-U04954-1Q) /CSM_Contig/Contig-U04954-1Q.Seq.d
CAACATTCATTGTACATTAAATACAAAAATTAATTTCCTAATTAATCCAT
ATATATTTAAAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAACTAAACAA
AACAAAAAACATCATTCAGTTAATTTATTTGAAAATATTTTTAATAATTA
TTTCGATTTATTTATTCATACATTAAAACAAATCNNNNNNNNAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATAAAACAAAATTAAATT
AAATTAAATTAATATCAATAATTAAAAATATAATTAAAATTAAAAAAAAA
AAACAAAATAGTTGTTACATTTTCGTGCACATCACAGTTATATATATATA
TTTATTTATTAATATTCCAATCAAATTTTTTTTTTTTTTATATTTGGACA
TATATTAAACCCAGTTTTTATTTATTTATTTATTTATTTATTTATTTATT
TATTTATTTATTATATTATTTATAAAAAAAAAAGAAAAAAAAAATTTCAA
GTTAATTTTGTGAAATATAAATTATTTAGAGTCTCATTACAAATTTAAAT
CAGAATAAGAAAATAATAATAATAAATTA
Gap no gap
Contig length 579
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3537863
End point 3537325
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U04954
List of clone(s) 

est1=SSE167E,1,580
Translated Amino Acid sequence 
NIHCTLNTKINFLINPYIFKIKKKKKKKKKTKQNKKHHSVNLFENIFNNYFDLFIHTLKQ
IXXXKKKKKKKKKKKKIIKQN*ikln*yq*lki*lklkkknkivvtfsctsqlyiyiyll
ifqsnffffyiwtyikpsfylfiylfiylfiyllyyl*kkkkkkiss*fcei*ii*slit
nlnqnkkiiiin
Translated Amino Acid sequence (All Frames) 
Frame A:
qhslyikykn*fpn*siyi*nqkkkkkkkkn*tkqktsfs*fi*kyf**lfrfiysyikt
nxxxkkkkkkkkkkkknnktkln*iklisiikniikikkkkqnscyifvhitviyiylfi
nipikfffflyldiy*tqflfiylfiylfiylfiilfikkkekknfklil*ninyleshy
kfkse*ennnnkl


Frame B:
NIHCTLNTKINFLINPYIFKIKKKKKKKKKTKQNKKHHSVNLFENIFNNYFDLFIHTLKQ
IXXXKKKKKKKKKKKKIIKQN*ikln*yq*lki*lklkkknkivvtfsctsqlyiyiyll
ifqsnffffyiwtyikpsfylfiylfiylfiyllyyl*kkkkkkiss*fcei*ii*slit
nlnqnkkiiiin


Frame C:
tfivh*iqklis*lihiylkskkkkkkkkklnktkniiqliylkifliiisiylfih*nk
sxxxkkkkkkkkkkkk**nkikln*ininn*kyn*n*kkktk*llhfrahhsyiyifiy*
ysnqiffffifghilnpvfiylfiylfiylfiyyiiykkkrkkkfqvnfvkyklfrvslq
i*irirk****i
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04954-1 (Contig-U04954-1Q)
/CSM_Contig/Contig-U04954-1Q.Seq.d
         (579 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04954-1 (Contig-U04954-1Q) /CSM_Contig/Conti...   182  3e-46
Contig-U09353-1 (Contig-U09353-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U01389-1 (Contig-U01389-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U14443-1 (Contig-U14443-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U12190-1 (Contig-U12190-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U09503-1 (Contig-U09503-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U09342-1 (Contig-U09342-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U06445-1 (Contig-U06445-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U04791-1 (Contig-U04791-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U09085-1 (Contig-U09085-1Q) /CSM_Contig/Conti...    32  0.63

>Contig-U04954-1 (Contig-U04954-1Q) /CSM_Contig/Contig-U04954-1Q.Seq.d
          Length = 579

 Score =  182 bits (92), Expect = 3e-46
 Identities = 92/92 (100%)
 Strand = Plus / Plus

                                                                       
Query: 93  ctaaacaaaacaaaaaacatcattcagttaatttatttgaaaatatttttaataattatt 152
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93  ctaaacaaaacaaaaaacatcattcagttaatttatttgaaaatatttttaataattatt 152

                                           
Query: 153 tcgatttatttattcatacattaaaacaaatc 184
           ||||||||||||||||||||||||||||||||
Sbjct: 153 tcgatttatttattcatacattaaaacaaatc 184


 Score =  168 bits (85), Expect = 4e-42
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                       
Query: 495 tttcaagttaattttgtgaaatataaattatttagagtctcattacaaatttaaatcaga 554
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tttcaagttaattttgtgaaatataaattatttagagtctcattacaaatttaaatcaga 554

                                    
Query: 555 ataagaaaataataataataaatta 579
           |||||||||||||||||||||||||
Sbjct: 555 ataagaaaataataataataaatta 579


 Score =  127 bits (64), Expect = 1e-29
 Identities = 64/64 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  caacattcattgtacattaaatacaaaaattaatttcctaattaatccatatatatttaa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  caacattcattgtacattaaatacaaaaattaatttcctaattaatccatatatatttaa 60

              
Query: 61 aatc 64
          ||||
Sbjct: 61 aatc 64


 Score = 69.9 bits (35), Expect = 3e-12
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                              
Query: 304 caaaatagttgttacattttcgtgcacatcacagt 338
           |||||||||||||||||||||||||||||||||||
Sbjct: 304 caaaatagttgttacattttcgtgcacatcacagt 338


 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 390 atatttggacatatattaaacccag 414
           |||||||||||||||||||||||||
Sbjct: 390 atatttggacatatattaaacccag 414


 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 352 ttatttattaatattccaatcaaa 375
           ||||||||||||||||||||||||
Sbjct: 352 ttatttattaatattccaatcaaa 375


>Contig-U09353-1 (Contig-U09353-1Q) /CSM_Contig/Contig-U09353-1Q.Seq.d
          Length = 2520

 Score = 42.1 bits (21), Expect = 7e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 552 agaataagaaaataataataataaa 576
           ||||||| |||||||||||||||||
Sbjct: 98  agaataataaaataataataataaa 122


 Score = 28.2 bits (14), Expect = 9.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                          
Query: 562  aataataataataa 575
            ||||||||||||||
Sbjct: 1278 aataataataataa 1291


 Score = 28.2 bits (14), Expect = 9.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                          
Query: 562  aataataataataa 575
            ||||||||||||||
Sbjct: 1287 aataataataataa 1300


 Score = 28.2 bits (14), Expect = 9.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                          
Query: 562  aataataataataa 575
            ||||||||||||||
Sbjct: 1272 aataataataataa 1285


 Score = 28.2 bits (14), Expect = 9.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                          
Query: 562  aataataataataa 575
            ||||||||||||||
Sbjct: 1284 aataataataataa 1297


 Score = 28.2 bits (14), Expect = 9.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                          
Query: 562  aataataataataa 575
            ||||||||||||||
Sbjct: 1275 aataataataataa 1288


 Score = 28.2 bits (14), Expect = 9.8
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                          
Query: 562  aataataataataa 575
            ||||||||||||||
Sbjct: 1281 aataataataataa 1294


>Contig-U01389-1 (Contig-U01389-1Q) /CSM_Contig/Contig-U01389-1Q.Seq.d
          Length = 1284

 Score = 42.1 bits (21), Expect = 7e-04
 Identities = 37/41 (90%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                     
Query: 540  caaatttaaatcagaataagaa-aataataataataaatta 579
            ||||||||||| | ||||| || ||||||||||||||||||
Sbjct: 1206 caaatttaaattataataataataataataataataaatta 1246


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,021
Number of Sequences: 6905
Number of extensions: 29021
Number of successful extensions: 10449
Number of sequences better than 10.0: 2116
length of query: 579
length of database: 5,674,871
effective HSP length: 16
effective length of query: 563
effective length of database: 5,564,391
effective search space: 3132752133
effective search space used: 3132752133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7. 5
Homology vs DNA 
Query= Contig-U04954-1 (Contig-U04954-1Q) /CSM_Contig/Contig-U04954-1Q.Seq.d
         (579 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU037680) Dictyostelium discoideum slug cDNA, clone SSE167.      168   5e-73  2
(AU072316) Dictyostelium discoideum slug cDNA, clone SSE167.      127   5e-25  1
(AE001421) Plasmodium falciparum 3D7 chromosome 2 section 58...    44   2e-06  5
(AL049180) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    48   3e-06  4
(AL844507) Plasmodium falciparum chromosome 8.                     52   7e-06  2
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5...    52   2e-05  2
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s...    48   2e-05  4
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    48   3e-05  3
(AE014836) Plasmodium falciparum 3D7 chromosome 11 section 1...    48   3e-05  3
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1...    48   3e-05  3
(CU855582) Zebrafish DNA sequence from clone CH73-218L21 in ...    56   5e-05  3
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9...    58   7e-05  2
(CT027678) Zebrafish DNA sequence from clone DKEY-103K19 in ...    50   1e-04  3
(AL844509) Plasmodium falciparum chromosome 13.                    50   2e-04  2
(CR382401) Plasmodium falciparum chromosome 6, complete sequ...    50   2e-04  3
(AB189721) Plasmodium falciparum PFC0470w mRNA, partial cds.       48   2e-04  2
(AL034557) Plasmodium falciparum MAL4P1.                           46   2e-04  3
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    48   2e-04  3
(AL935318) Zebrafish DNA sequence from clone CH211-251L7 in ...    44   2e-04  3
(Z98551) Plasmodium falciparum MAL3P6.                             48   2e-04  5
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4...    48   3e-04  4
(BX470068) Zebrafish DNA sequence from clone CH211-219C8 in ...    46   3e-04  3
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s...    50   4e-04  2
(CU896632) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   4e-04  4
(CU695344) Brassica rapa subsp. pekinensis clone KBrH127I15,...    48   5e-04  2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    46   5e-04  4
(BX510958) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   6e-04  3
(CU463221) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   7e-04  2
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    50   7e-04  4
(AB232968) Sirocalodes umbrinus gene for 12S ribosomal RNA, ...    36   8e-04  5
(AC097473) Homo sapiens BAC clone RP11-75N20 from 4, complet...    42   8e-04  4
(AC006278) Plasmodium falciparum chromosome 12 clone PFYAC34...    48   9e-04  4
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ...    48   9e-04  4
(AC171132) Helobdella robusta clone CH306-1A3, complete sequ...    44   0.001  3
(BX206993) Danio rerio genomic clone DKEY-237J21, genomic su...    44   0.001  2
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3...    54   0.001  2
(CL028256) CH216-27E16_Sp6.1 CH216 Xenopus (Silurana) tropic...    44   0.001  2
(CR855265) Zebrafish DNA sequence from clone CH211-195E6 in ...    44   0.001  5
(BX950172) Zebrafish DNA sequence from clone DKEY-20F24 in l...    54   0.001  3
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s...    50   0.001  2
(BX119965) Zebrafish DNA sequence from clone RP71-86I6 in li...    46   0.001  5
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s...    48   0.001  2
(AL035476) Plasmodium falciparum MAL4P3.                           54   0.001  2
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5...    48   0.001  3
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ...    48   0.001  3
(BX511215) Zebrafish DNA sequence from clone CH211-66C13 in ...    56   0.002  1
(BX248128) Zebrafish DNA sequence from clone CH211-198G14 Co...    56   0.002  1
(AE014844) Plasmodium falciparum 3D7 chromosome 12, section ...    56   0.002  1
(AC155040) Bos taurus clone CH240-35G4, WORKING DRAFT SEQUEN...    56   0.002  1
(BM275442) PfESToaa68h12.y1 Plasmodium falciparum 3D7 gameto...    56   0.002  1
(BM273626) PfESToaa57d03.y1 Plasmodium falciparum 3D7 gameto...    56   0.002  1
(FP236321) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   0.002  3
(AE001427) Plasmodium falciparum 3D7 chromosome 2 section 64...    44   0.002  5
(AC145335) Pan troglodytes clone rp43-26k12, complete sequence.    54   0.002  4
(AP001269) Homo sapiens genomic DNA, chromosome 18 clone:RP1...    44   0.002  3
(AC096773) Homo sapiens BAC clone RP11-810P8 from 4, complet...    54   0.002  4
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g...    44   0.002  4
(AU086220) Plasmodium falciparum 3D7 cDNA clone from Sugano ...    40   0.002  2
(AL096783) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    46   0.002  3
(AL845550) Zebrafish DNA sequence from clone CH211-121D13 in...    44   0.002  3
(BX005124) Zebrafish DNA sequence from clone CH211-284A16 in...    48   0.002  2
(CU469542) Zebrafish DNA sequence from clone CH73-21F1 in li...    44   0.003  3
(CT027812) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   0.003  4
(EA681434) Sequence 60313 from patent US 7365185.                  40   0.003  3
(CU076053) Zebrafish DNA sequence from clone CH73-79L24 in l...    46   0.003  3
(EA683826) Sequence 62705 from patent US 7365185.                  44   0.003  4
(CR974433) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    50   0.003  2
(CR626866) Zebrafish DNA sequence from clone DKEY-147F20 in ...    46   0.003  4
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI...    48   0.003  3
(AC219949) Bos taurus clone CH240-317M18, WORKING DRAFT SEQU...    46   0.003  3
(CU652698) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   0.003  6
(BX005312) Zebrafish DNA sequence from clone DKEY-79N12 in l...    40   0.004  6
(EY339859) CAWY9951.fwd CAWY Helobdella robusta Subtracted E...    50   0.004  2
(CT573225) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.004  3
(CR759965) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.004  2
(BX510332) Zebrafish DNA sequence from clone CH211-225M7.          44   0.004  4
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2...    50   0.004  2
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ...    48   0.004  2
(EY324922) CAWY10598.fwd CAWY Helobdella robusta Subtracted ...    50   0.004  2
(CR377226) Zebrafish DNA sequence from clone DKEY-120I4 in l...    44   0.004  4
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2...    50   0.004  2
(EY330440) CAWY3479.fwd CAWY Helobdella robusta Subtracted E...    50   0.004  2
(AF139108) Plasmodium falciparum DNA replication licensing f...    44   0.004  2
(AL034560) Plasmodium falciparum MAL3P8.                           46   0.004  3
(CU570896) Zebrafish DNA sequence from clone DKEY-194E13 in ...    44   0.004  4
(AL008970) Plasmodium falciparum MAL3P4.                           48   0.005  3
(Z98547) Plasmodium falciparum MAL3P3.                             46   0.005  3
(AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    48   0.005  2
(AL844506) Plasmodium falciparum chromosome  7.                    50   0.005  2
(AC115594) Dictyostelium discoideum chromosome 2 map 4071862...    40   0.005  3
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ...    48   0.005  3
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    48   0.005  3
(DU748024) ASNC4114.g2 HF10_10-07-02 uncultured marine micro...    40   0.005  2
(BX571806) Human DNA sequence *** SEQUENCING CANCELLED *** f...    50   0.006  4
(DY263090) IC0AAA10DB08RM1 CitNFL Citrus clementina cDNA 5',...    44   0.006  2
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1...    48   0.006  3
(BD452974) Diagnosis of Diseases Associated with tumor suppr...    40   0.006  4
(AX251453) Sequence 421 from Patent WO0168912.                     40   0.006  4
(AJ404228) Saccharomyces douglasii mitochondrial tRNA gene c...    54   0.006  1
(AC188660) Canis Familiaris chromosome 6, clone XX-493K10, c...    54   0.006  1
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1...    54   0.006  1
(AC180655) Strongylocentrotus purpuratus clone R3-3019L21, W...    54   0.006  1
(AC178616) Strongylocentrotus purpuratus clone R3-3021F5, WO...    54   0.006  1
(AC168340) Strongylocentrotus purpuratus clone R3-58F3, WORK...    54   0.006  1
(ET340284) S0249N11_T7 CHORI-214 Salmo salar genomic clone S...    54   0.006  1
(ET266301) S0247O02_T7 CHORI-214 Salmo salar genomic clone S...    54   0.006  1
(BU496950) PfESToab61a08.y1 Plasmodium falciparum 3D7 asexua...    54   0.006  1
(BU494769) PfESToab67e05.y1 Plasmodium falciparum 3D7 asexua...    54   0.006  1
(ES450320) 25290 Myzus persicae 2001-12 (red), Fenton Myzus ...    54   0.006  1
(AL929359) Plasmodium falciparum strain 3D7, chromosome 9; s...    48   0.006  3
(AC234780) Homo sapiens chromosome X clone RP11-472G2, *** S...    42   0.006  3
(CU681839) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.007  2
(AC156244) Xenopus (Silurana) tropicalis clone CH216-92I18, ...    48   0.007  3
(AF452048) Pyrocoelia rufa mitochondrion, complete genome.         36   0.007  5
(CT573206) Zebrafish DNA sequence from clone CH73-343K13 in ...    44   0.007  2
(AC172842) Bos taurus clone CH240-267L5, WORKING DRAFT SEQUE...    44   0.007  3
(FP102975) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.007  2
(BX936395) Zebrafish DNA sequence from clone DKEY-152H20 in ...    40   0.007  4
(CT027637) Zebrafish DNA sequence from clone DKEY-78B4 in li...    48   0.007  4
(DJ387361) Diagnosis of Diseases Associated with Apoptosis.        40   0.007  3
(AX344604) Sequence 29 from Patent WO0200927.                      40   0.007  3
(AX281269) Sequence 11 from Patent WO0177164.                      40   0.007  3
(FH811503) OSB_1199004xh01r1.ab1 OSB_1199 Nicotiana tabacum ...    48   0.008  2
(AL034558) Plasmodium falciparum MAL3P2.                           48   0.008  3
(AC006280) Plasmodium falciparum chromosome 12 clone PFYAC72...    48   0.009  3
(CU571379) Zebrafish DNA sequence from clone CH1073-277P6.         44   0.009  2
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s...    48   0.009  3
(AU087755) Plasmodium falciparum 3D7 cDNA clone from Sugano ...    44   0.009  2
(FH810647) OSB_1199003xl01f1.ab1 OSB_1199 Nicotiana tabacum ...    48   0.009  2
(AC023981) Homo sapiens chromosome 2 clone RP11-210K1 map 2,...    44   0.009  3
(AL844501) Plasmodium falciparum strain 3D7, chromosome 1.         48   0.009  2
(AM482001) Vitis vinifera contig VV78X061745.7, whole genome...    44   0.010  2
(FH810419) OSB_1199003xi19f2.ab1 OSB_1199 Nicotiana tabacum ...    48   0.010  2
(AF400002) Plasmodium falciparum chimeric erythrocyte-bindin...    46   0.010  2
(AM482964) Vitis vinifera, whole genome shotgun sequence, co...    42   0.010  4
(AM460297) Vitis vinifera contig VV78X127902.14, whole genom...    42   0.010  2
(AC005308) Plasmodium falciparum chromosome 12 clone PFYAC49...    48   0.010  3
(CR628335) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   0.010  3
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    48   0.010  4
(AE014835) Plasmodium falciparum 3D7 chromosome 10 section 7...    48   0.010  3
(CT573274) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.010  2
(AC004216) Homo sapiens 12 PAC RPCI1-66E7 (Roswell Park Canc...    42   0.010  3
(AC004153) Plasmodium falciparum chromosome 12 clone PFYAC81...    48   0.010  4
(AY042084) Plasmodium falciparum erythrocyte binding protein...    46   0.011  2
(FH810872) OSB_1199002xe05f1.ab1 OSB_1199 Nicotiana tabacum ...    48   0.011  2
(L46348) Plasmodium falciparum clone HB3 d-aminolevulinic ac...    44   0.011  3
(CR382291) Zebrafish DNA sequence from clone CH211-245G10.         44   0.011  4
(AC223760) Bos taurus clone CH240-458C15, WORKING DRAFT SEQU...    44   0.011  4
(AC087591) Homo sapiens chromosome 3 clone RP11-95M5 map 3p,...    46   0.011  4
(AC005507) Plasmodium falciparum chromosome 12 clone PFYACB8...    46   0.012  2
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    34   0.012  5
(BX649499) Zebrafish DNA sequence from clone DKEY-60A16 in l...    44   0.012  2
(AE001405) Plasmodium falciparum 3D7 chromosome 2 section 42...    46   0.012  2
(AF030694) Plasmodium falciparum strain Dd2 heat shock prote...    46   0.012  3
(CT827822) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   0.012  4
(AL928927) Zebrafish DNA sequence from clone CH211-113H16 in...    48   0.013  4
(FH202438) CHO_OF3091xa10r1.ab1 CHO_OF3 Nicotiana tabacum ge...    48   0.013  2
(BX927262) Zebrafish DNA sequence from clone CH211-276D15 in...    44   0.013  4
(CT573237) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.013  3
(AE001373) Plasmodium falciparum 3D7 chromosome 2 section 10...    44   0.013  3
(FH811203) OSB_1199002xl21r1.ab1 OSB_1199 Nicotiana tabacum ...    48   0.014  2
(FP102800) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.014  3
(CS374671) Sequence 774 from Patent WO2006034879.                  40   0.014  3
(CS374399) Sequence 502 from Patent WO2006034879.                  40   0.014  3
(CT027769) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   0.014  5
(FH810578) OSB_1199003xi16r1.ab1 OSB_1199 Nicotiana tabacum ...    48   0.014  2
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ...    46   0.014  2
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5...    48   0.015  2
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6...    48   0.015  2
(AL034559) Plasmodium falciparum MAL3P7.                           48   0.015  2
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI...    48   0.015  2
(AQ742931) HS_5386_B2_B09_T7A RPCI-11 Human Male BAC Library...    42   0.015  2
(BU498326) PfESToab95g08.y1 Plasmodium falciparum 3D7 asexua...    46   0.015  2
(AL844152) Zebrafish DNA sequence from clone DKEY-37L7 in li...    46   0.015  4
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    48   0.015  2
(AC192200) Pan troglodytes BAC clone CH251-51C10 from chromo...    44   0.015  4
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    48   0.015  2
(FH810837) OSB_1199003xl08r1.ab1 OSB_1199 Nicotiana tabacum ...    48   0.015  2
(AL035477) Plasmodium falciparum MAL4P4.                           48   0.016  2
(M10129) Plasmodium falciparum (isolate FC27) S-antigen gene.      46   0.016  2
(CR788281) Zebrafish DNA sequence from clone DKEY-175G20 in ...    42   0.016  2
(AE001413) Plasmodium falciparum 3D7 chromosome 2 section 50...    48   0.016  2
(CT955999) Zebrafish DNA sequence from clone CH73-366I11 in ...    44   0.016  3
(AL441986) Human DNA sequence from clone RP11-349O10 on chro...    46   0.017  4
(CU914625) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.017  4
(CR385066) Zebrafish DNA sequence from clone DKEY-220L23 in ...    46   0.017  3
(CU984586) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.017  2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    40   0.017  6
(CT033806) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.017  4
(BX663603) Zebrafish DNA sequence from clone DKEY-11H7 in li...    44   0.017  4
(AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18...    48   0.018  4
(AC005140) Plasmodium falciparum chromosome 12 clone PFYACB8...    48   0.018  2
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    48   0.018  2
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1...    48   0.018  3
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3...    48   0.018  3
(CR936410) Zebrafish DNA sequence from clone CH73-45K13 in l...    44   0.018  3
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s...    48   0.019  2
(AM436327) Vitis vinifera contig VV78X256772.11, whole genom...    46   0.019  3
(CU571332) Zebrafish DNA sequence from clone CH73-50A21 in l...    44   0.019  3
(AX344573) Sequence 24 from Patent WO0200932.                      38   0.020  7
(CU855938) Zebrafish DNA sequence from clone CH1073-325M22 i...    46   0.020  3
(AF010509) Plasmodium falciparum microsatellite TA39 sequence.     44   0.020  2
(AC115605) Dictyostelium discoideum chromosome 2 map 5817431...    36   0.020  4
(AF010529) Plasmodium falciparum microsatellite TA135 sequence.    48   0.021  2
(AM479000) Vitis vinifera contig VV78X056978.5, whole genome...    40   0.021  3
(AC217237) Zea mays chromosome 4 clone ZMMBBb-277E17; ZMMBBb...    44   0.022  3
(AC006194) Arabidopsis thaliana chromosome 2 clone T17A11 ma...    48   0.022  2
(X79345) Plasmodium falciparum TopoII gene.                        46   0.022  2
(BX908395) Zebrafish DNA sequence from clone DKEY-242H9 in l...    44   0.022  4
(AC214468) Populus trichocarpa clone POP038-L21, complete se...    44   0.022  5
(BX072560) Zebrafish DNA sequence from clone DKEY-94J17 in l...    46   0.022  3
(AM451920) Vitis vinifera contig VV78X021166.20, whole genom...    46   0.022  3
(AE001430) Plasmodium falciparum 3D7 chromosome 2 section 67...    44   0.023  4
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    44   0.023  5
(AC177540) Strongylocentrotus purpuratus clone R3-1026O17, W...    46   0.023  4
(AC159441) Trypanosoma brucei chromosome 5 clone RPCI93-30F7...    44   0.024  2
(CU694759) Zebrafish DNA sequence from clone DKEY-200G12 in ...    50   0.024  3
(CR749173) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   0.024  3
(BD460529) Diagnosis of Diseases Associated with Cell Cycle.       34   0.024  5
(BD452451) Diagnosis of Diseases Associated with Cell Cycle.       34   0.024  5
(AX348934) Sequence 392 from Patent WO0202807.                     34   0.024  5
(AX252065) Sequence 326 from Patent WO0168911.                     34   0.024  5
(DD194611) Method and nucleic acids for the analysis of a co...    52   0.024  1
(DD194609) Method and nucleic acids for the analysis of a co...    52   0.024  1
(BD453025) Diagnosis of Diseases Associated with tumor suppr...    52   0.024  1
(AX825171) Sequence 5 from Patent WO03072812.                      52   0.024  1
(AX825169) Sequence 3 from Patent WO03072812.                      52   0.024  1
(AX344503) Sequence 350 from Patent WO0200926.                     52   0.024  1
(AX251504) Sequence 472 from Patent WO0168912.                     52   0.024  1
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7...    52   0.024  1
(AC216369) Zea mays chromosome 10 clone CH201-544F19; ZMMBBc...    52   0.024  1
(EY310363) CAWX22107.rev CAWX Helobdella robusta Primary Ear...    52   0.024  1
(X83707) P.falciparum PK1 gene.                                    44   0.024  3
(AX346393) Sequence 1464 from Patent WO0200928.                    40   0.025  3
(AC159435) Trypanosoma brucei chromosome 8 clone RPCI93-29H2...    48   0.025  3
(CU651656) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.026  3
(BQ596105) PfESToab29c10.y1 Plasmodium falciparum 3D7 asexua...    48   0.026  2
(CR385090) Zebrafish DNA sequence from clone CH211-245M19 in...    46   0.026  4
(AC213495) Populus trichocarpa clone POP050-O20, complete se...    44   0.027  2
(CU694370) Zebrafish DNA sequence from clone CH73-269F15 in ...    42   0.027  3
(AC026023) Homo sapiens chromosome X clone RP11-308D10 map X...    42   0.027  3
(DJ060319) Method and nucleic acids for the improved treatme...    36   0.027  3
(CS124666) Sequence 352 from Patent WO2005059172.                  36   0.027  3
(L18785) Plasmodium falciparum DNA polymerase alpha gene, co...    44   0.028  2
(AL928622) Zebrafish DNA sequence from clone DKEY-31O13.           50   0.028  4
(CR925822) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   0.028  3
(AC104997) Homo sapiens chromosome 8, clone RP11-1149M3, com...    44   0.029  4
(AX344609) Sequence 34 from Patent WO0200927.                      34   0.029  5
(FP102796) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.029  2
(CU693453) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   0.029  5
(AP007215) Homo sapiens genomic DNA, chromosome 11 clone:CMF...    44   0.029  3
(AL158203) Human DNA sequence from clone RP11-93B10 on chrom...    42   0.030  3
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         36   0.030  8
(FB596861) Sequence 12584 from Patent WO2004081186.                44   0.031  3
(FH810709) OSB_1199003xl11r1.ab1 OSB_1199 Nicotiana tabacum ...    48   0.031  2
(AM476831) Vitis vinifera contig VV78X024676.7, whole genome...    48   0.032  3
(BI814933) PfESToaa08b07.y1 Plasmodium falciparum 3D7 asexua...    48   0.032  2
(BX000460) Zebrafish DNA sequence from clone CH211-15E22 in ...    44   0.033  3
(BX663609) Zebrafish DNA sequence from clone DKEY-182H7 in l...    44   0.033  4
(CU984603) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.034  4
(AM481608) Vitis vinifera, whole genome shotgun sequence, co...    44   0.034  3
(CR394561) Zebrafish DNA sequence from clone CH211-28G14 in ...    44   0.035  2
(AL772300) Zebrafish DNA sequence from clone CH211-165G14.         50   0.035  2
(EY391795) CAXA9471.rev CAXA Helobdella robusta Subtracted L...    42   0.035  2
(BX000507) Oryza sativa chromosome 12, . BAC OJ1003_C01 of l...    44   0.035  4
(CR931791) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.036  3
(CT737153) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.036  2
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co...    36   0.036  5
(AC209863) Zea mays chromosome 4 clone CH201-27P8; ZMMBBc002...    44   0.036  3
(EL495735) F02_PFBAMHI-M-T7-PLATE34A.AB1 Blood stage Plasmod...    46   0.036  2
(AL161731) Human DNA sequence from clone RP11-489N22 on chro...    44   0.036  3
(AE001423) Plasmodium falciparum 3D7 chromosome 2 section 60...    44   0.037  4
(CT027720) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.037  3
(CT573329) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.038  2
(BX682544) Zebrafish DNA sequence from clone CH211-189G6 in ...    44   0.039  4
(CR352248) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.039  2
(CR376825) Zebrafish DNA sequence from clone CH211-136O20 in...    44   0.039  2
(AF186995) Homo sapiens chromosome 8 clone GS1-165d4 map 8p1...    44   0.039  3
(AL840627) Zebrafish DNA sequence from clone CH211-278B16 in...    44   0.039  4
(AC009455) Homo sapiens chromosome 18, clone RP11-169F17, co...    42   0.040  3
(BX005169) Zebrafish DNA sequence from clone CH211-81D10 in ...    36   0.040  4
(CR388213) Zebrafish DNA sequence from clone DKEY-87J4 in li...    48   0.040  2
(AZ523888) 224PbF01 Pb MBN #21 Plasmodium berghei genomic 3'...    44   0.041  2
(BX465205) Zebrafish DNA sequence from clone CH211-197E7 in ...    50   0.042  2
(CU138554) Zebrafish DNA sequence from clone DKEY-201H12.          44   0.042  2
(AC193047) Macaca mulatta clone CH250-181G4, WORKING DRAFT S...    44   0.042  4
(EX625483) 255432387 Pea aphid whole body normalized full le...    42   0.042  2
(AM698041) Vanderwaltozyma polyspora partial mitochondrial g...    46   0.042  5
(AM475388) Vitis vinifera, whole genome shotgun sequence, co...    42   0.044  3
(CU759405) A BAC library has been constructed from PN40024 g...    44   0.044  2
(CR759803) Zebrafish DNA sequence from clone DKEY-189M18 in ...    44   0.044  4
(FP103056) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.044  3
(AE001411) Plasmodium falciparum 3D7 chromosome 2 section 48...    44   0.045  2
(CC453795) BARC-Sat_260 Size-selected soybean genomic Glycin...    32   0.045  3
(AC090454) Homo sapiens chromosome 15, clone RP11-61M22, com...    44   0.045  3
(CR388124) Zebrafish DNA sequence from clone CH211-72C8 in l...    46   0.045  4
(CR749771) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.045  2
(BX005313) Zebrafish DNA sequence from clone CH211-119C24.         44   0.045  4
(AC150823) Callithrix jacchus clone CH259-381L14, WORKING DR...    44   0.045  3
(BX322617) Zebrafish DNA sequence from clone DKEY-33D4.            42   0.045  3
(AC146695) Pan troglodytes clone rp43-48d2, complete sequence.     46   0.046  4
(FP236356) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.046  4
(EY314354) CAWX25463.rev CAWX Helobdella robusta Primary Ear...    44   0.046  2
(CU013527) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.047  4
(AE001385) Plasmodium falciparum 3D7 chromosome 2 section 22...    44   0.047  2
(AC068537) Homo sapiens BAC clone RP11-138C13 from 2, comple...    44   0.047  5
(AE001400) Plasmodium falciparum 3D7 chromosome 2 section 37...    46   0.048  3
(BX248502) Zebrafish DNA sequence from clone DKEY-284M10 in ...    44   0.049  3
(CR759841) Zebrafish DNA sequence from clone DKEY-192G7 in l...    38   0.049  5
(BX679672) Zebrafish DNA sequence from clone CH211-20B12 in ...    44   0.049  2
(FH938103) CHO_OF6652xb10r1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   0.049  2
(EE712482) AGENCOURT_90184334 NIH_ZGC_29 Danio rerio cDNA cl...    46   0.050  2
(DT357594) JGI_CABZ448.rev CABZ Pimephales promelas 2-14 day...    44   0.050  2
(EY375305) CAXA15557.rev CAXA Helobdella robusta Subtracted ...    42   0.050  2
(CX934333) JGI_CAAO3758.rev NIH_XGC_tropTe5 Xenopus (Siluran...    46   0.050  2
(AM469655) Vitis vinifera contig VV78X207105.4, whole genome...    44   0.050  3
(BX511067) Zebrafish DNA sequence from clone DKEYP-29G6 in l...    44   0.050  4
(AL049181) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    48   0.050  4
(AL035475) Plasmodium falciparum MAL4P2.                           50   0.050  2
(AC123015) Rattus norvegicus clone CH230-154H6, *** SEQUENCI...    44   0.051  2
(AM455906) Vitis vinifera contig VV78X125257.5, whole genome...    42   0.051  3
(EU677193) Oedogonium cardiacum strain SAG 575-1b chloroplas...    38   0.051  5
(AC168485) Strongylocentrotus purpuratus clone R3-3117K14, W...    46   0.053  3
(CR628381) Zebrafish DNA sequence from clone DKEY-27I16 in l...    42   0.053  2
(CR925821) Zebrafish DNA sequence from clone DKEY-27D1 in li...    42   0.053  4
(CT737279) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    50   0.053  3
(AC124863) Homo sapiens chromosome UNK clone RP11-79M16, WOR...    44   0.053  5
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8...    48   0.054  2
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3...    48   0.054  2
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1...    48   0.054  2
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1...    48   0.054  2
(CU672267) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.054  3
(CR388014) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.054  3
(EY294879) CAWX11937.rev CAWX Helobdella robusta Primary Ear...    44   0.054  2
(DN786944) 88006283 Sea Urchin primary mesenchyme cell cDNA ...    40   0.054  2
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7...    46   0.054  2
(AC145840) Takifugu rubripes clone 248A2, WORKING DRAFT SEQU...    42   0.055  3
(EY682637) CS00-C1-650-035-A06-CT.F Sweet orange leaf, young...    44   0.055  2
(BX323467) Zebrafish DNA sequence from clone DKEY-48N15 in l...    40   0.055  4
(FH063664) CHO_OF3000xn05r1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   0.055  2
(EY878413) LT33-C1-003-001-D04-CT.F Tahiti lime leaf, greenh...    46   0.056  2
(AL929324) Zebrafish DNA sequence from clone BUSM1-SL10 in l...    46   0.056  4
(BX936459) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.056  3
(EY886326) LT33-C1-003-026-H04-CT.F Tahiti lime leaf, greenh...    46   0.058  2
(AC124711) Mus musculus BAC clone RP24-100M12 from 12, compl...    38   0.058  2
(AC106876) Homo sapiens BAC clone RP11-512N9 from 2, complet...    48   0.058  3
(EI929704) VUH2-80H13TR VUUBBa (VUH2) Vigna unguiculata geno...    44   0.059  2
(AX346929) Sequence 2000 from Patent WO0200928.                    38   0.059  4
(AC196187) Trichinella spiralis BAC clone TS195-17H12 from c...    44   0.059  5
(AC107684) Mus musculus chromosome 5, clone RP24-389O5, comp...    40   0.060  2
(DX406127) GR_Sa0006B08.b1 Gossypium raimondii WGS library G...    34   0.061  3
(FP102277) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.062  3
(AC078789) Homo sapiens 12 BAC RP11-769N19 (Roswell Park Can...    42   0.062  4
(CU928928) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   0.063  2
(M59770) P.falciparum calmodulin gene, complete cds.               44   0.064  2
(AM459952) Vitis vinifera contig VV78X173950.4, whole genome...    38   0.064  2
(ET803836) CHO_OF689xb21f1.ab1 CHO_OF Nicotiana tabacum geno...    42   0.065  3
(AM481108) Vitis vinifera contig VV78X131706.3, whole genome...    38   0.065  3
(EC433340) 132443253 Sea Urchin Coelomocyte cDNA library Str...    44   0.065  2
(AM484016) Vitis vinifera contig VV78X045764.8, whole genome...    46   0.066  2
(AM447979) Vitis vinifera contig VV78X026554.5, whole genome...    44   0.067  2
(CT956086) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   0.067  4
(AL929048) Zebrafish DNA sequence from clone CH211-161N1 in ...    44   0.068  5
(CL049135) CH216-69G3_Sp6.1 CH216 Xenopus (Silurana) tropica...    46   0.068  2
(BX936310) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.068  4
(BX629344) Zebrafish DNA sequence from clone CH211-231D1 in ...    44   0.068  2
(AC005504) Plasmodium falciparum chromosome 12, *** SEQUENCI...    44   0.069  5
(DQ466099) Anopheles sinensis haplotype 9 control region, co...    36   0.070  3
(AC233690) Bos taurus clone CH240-472L18, WORKING DRAFT SEQU...    46   0.070  3
(AC189218) Brassica rapa subsp. pekinensis clone KBrB010F13,...    44   0.072  4
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    48   0.072  2
(CR382398) Plasmodium falciparum chromosome 6, complete sequ...    48   0.072  2
(AL714005) Zebrafish DNA sequence from clone BUSM1-13F19 in ...    40   0.073  6
(CU929155) Zebrafish DNA sequence from clone CH73-331C10 in ...    36   0.073  4
(AZ928604) 479.dif13a08.s1 Saccharomyces kluyveri Lachancea ...    42   0.073  2
(BX005328) Zebrafish DNA sequence from clone DKEY-63D15 in l...    46   0.073  3
(EI882857) CAH1-64N16TV CAA1Ba Cicer arietinum genomic clone...    32   0.073  3
(CU459086) Zebrafish DNA sequence from clone CH211-185G10 in...    42   0.075  3
(BX855612) Zebrafish DNA sequence from clone CH211-198C22 in...    36   0.075  4
(CT554371) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.076  3
(AC199260) Saimiri boliviensis boliviensis clone CH254-127L1...    44   0.076  4
(CU041377) Zebrafish DNA sequence from clone DKEY-240A22 in ...    44   0.077  3
(CU463947) Zebrafish DNA sequence from clone CH211-11F16 in ...    46   0.079  2
(CU459173) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   0.080  3
(L36887) Saccharomyces cerevisiae mitochondrion transfer RNA...    32   0.081  5
(CL648156) CH213-164O12.T7 CH213 Gasterosteus aculeatus geno...    38   0.082  2
(CR524826) Zebrafish DNA sequence from clone CH211-227A6 in ...    34   0.083  4
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    36   0.084  6
(BX510999) Zebrafish DNA sequence from clone CH211-157P22 in...    44   0.085  5
(DJ386614) Diagnosis of Diseases Associated with Metastasis.       46   0.087  2
(AX348678) Sequence 136 from Patent WO0202807.                     46   0.087  2
(AX345871) Sequence 942 from Patent WO0200928.                     46   0.087  2
(AX281410) Sequence 74 from Patent WO0177376.                      46   0.087  2
(AY955840) Paracoccidioides brasiliensis strain Pb18 mitocho...    44   0.088  3
(CU611043) Zebrafish DNA sequence from clone CH1073-365B9 in...    44   0.088  3
(AX347077) Sequence 2148 from Patent WO0200928.                    38   0.089  5
(AP008208) Oryza sativa (japonica cultivar-group) genomic DN...    44   0.089  2
(FP074878) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.090  3
(CR848661) Zebrafish DNA sequence from clone CH211-187B9 in ...    44   0.091  3
(AL929343) Zebrafish DNA sequence from clone CH211-144G12.         42   0.091  3
(BX936305) Zebrafish DNA sequence from clone CH211-51N3 in l...    44   0.091  3
(CZ949034) 261516 Tomato EcoRI BAC Library Solanum lycopersi...    34   0.092  3
(AC209152) Papio anubis clone RP41-181M12, WORKING DRAFT SEQ...    38   0.093  5
(AF160864) Tetrahymena pyriformis mitochondrial DNA, complet...    36   0.094  6
(FP015809) Zebrafish DNA sequence from clone CH1073-284B18 i...    50   0.095  1
(CU407320) Zebrafish DNA sequence from clone CH73-6G23 in li...    50   0.095  1
(CU302309) Zebrafish DNA sequence from clone DKEY-80C17 in l...    50   0.095  1
(CT027640) Zebrafish DNA sequence from clone CH73-203D16 in ...    50   0.095  1
(CR790378) Zebrafish DNA sequence from clone DKEY-112E17 in ...    50   0.095  1
(CR788319) Zebrafish DNA sequence from clone DKEY-245H10 in ...    50   0.095  1
(CR762475) Zebrafish DNA sequence from clone DKEY-220A11 in ...    50   0.095  1
(CR385035) Zebrafish DNA sequence from clone DKEY-182I1 in l...    50   0.095  1
(CR381551) Zebrafish DNA sequence from clone DKEY-203A12 in ...    50   0.095  1
(BX957242) Zebrafish DNA sequence from clone CH211-129B17 in...    50   0.095  1
(BX649634) Zebrafish DNA sequence from clone CH211-284G18 in...    50   0.095  1
(BX469933) Zebrafish DNA sequence from clone CH211-207E19 in...    50   0.095  1
(BX469888) Zebrafish DNA sequence from clone CH211-73C20 in ...    50   0.095  1
(BX322538) Zebrafish DNA sequence from clone CH211-245G11 in...    50   0.095  1
(BX296567) Zebrafish DNA sequence from clone DKEY-261P22 in ...    50   0.095  1
(BX088547) Zebrafish DNA sequence from clone DKEY-238O14.          50   0.095  1
(AL935305) Zebrafish DNA sequence from clone CH211-226I4 in ...    50   0.095  1
(FM992694) Candida dubliniensis CD36 chromosome 7, complete ...    50   0.095  1
(FJ148619) Daucus carota subsp. sativus clone BAC C103M03 ge...    50   0.095  1
(CR382136) Debaryomyces hansenii strain CBS767 chromosome A ...    50   0.095  1
(AP008211) Oryza sativa (japonica cultivar-group) genomic DN...    50   0.095  1
(AM480045) Vitis vinifera, whole genome shotgun sequence, co...    50   0.095  1
(AM424084) Vitis vinifera contig VV78X009000.5, whole genome...    50   0.095  1
(AC183492) Brassica oleracea Contig G, complete sequence.          50   0.095  1
(AC152973) Oryza sativa Japonica Group chromosome 5 clone OS...    50   0.095  1
(AC148611) Oryza sativa Japonica Group chromosome 5 clone B1...    50   0.095  1
(FB898252) Sequence 117525 from Patent WO2008034648.               50   0.095  1
(CS741909) Sequence 9905 from Patent WO2005083127.                 50   0.095  1
(DQ471403) Campiglossa misella 16S ribosomal RNA gene, parti...    50   0.095  1
(DQ462069) Euhadra quaesita haplotype 94 16S ribosomal RNA g...    50   0.095  1
(DQ462021) Euhadra quaesita haplotype 46 16S ribosomal RNA g...    50   0.095  1
(DQ462020) Euhadra quaesita haplotype 45 16S ribosomal RNA g...    50   0.095  1
(AY442208) Drosophila subobscura strain Hierro-20 A+T rich r...    50   0.095  1
(AM502233) Leishmania infantum chromosome 15.                      50   0.095  1
(AF354242) Euhadra quaesita haplotype Ueda-A 16S ribosomal R...    50   0.095  1
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ...    50   0.095  1
(AE001410) Plasmodium falciparum 3D7 chromosome 2 section 47...    50   0.095  1
(AE001383) Plasmodium falciparum 3D7 chromosome 2 section 20...    50   0.095  1
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    50   0.095  1
(AL118505) Human DNA sequence from clone RP5-1056H1 on chrom...    50   0.095  1
(AC036144) Homo sapiens chromosome 8, clone RP11-293L6, comp...    50   0.095  1
(AC025538) Homo sapiens BAC clone RP11-274J2 from 4, complet...    50   0.095  1
(AC016031) Homo sapiens, clone RP11-12J8, complete sequence.       50   0.095  1
(AC158022) Bos taurus clone CH240-132G10, WORKING DRAFT SEQU...    50   0.095  1
(AC155155) Bos taurus clone CH240-37C6, WORKING DRAFT SEQUEN...    50   0.095  1
(AC152658) Bos taurus clone CH240-14O14, *** SEQUENCING IN P...    50   0.095  1
(AC105296) Trypanosoma cruzi strain CL Brener clone GAMER54,...    50   0.095  1
(AC099247) Rattus norvegicus clone CH230-193E9, *** SEQUENCI...    50   0.095  1
(AC097670) Rattus norvegicus clone CH230-112C7, WORKING DRAF...    50   0.095  1
(AC048363) Homo sapiens chromosome 8 clone RP11-683D15 map 8...    50   0.095  1
(CU457791) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    50   0.095  1
(CR846098) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    50   0.095  1
(AC213783) Zea mays chromosome 3 clone CH201-29K21; ZMMBBc00...    50   0.095  1
(AC212898) Zea mays chromosome 3 clone ZMMBBb-370F6; ZMMBBb0...    50   0.095  1
(AC181618) Strongylocentrotus purpuratus clone R3-1105N23, W...    50   0.095  1
(AC180784) Strongylocentrotus purpuratus clone R3-3023M10, W...    50   0.095  1
(AC018959) Homo sapiens clone RP11-137K15, LOW-PASS SEQUENCE...    50   0.095  1
(AC016417) Homo sapiens clone RP11-11K5, WORKING DRAFT SEQUE...    50   0.095  1
(AC013566) Homo sapiens chromosome 8 clone RP11-361K2 map 8,...    50   0.095  1
(AC005506) Plasmodium falciparum chromosome 12 clone PFYAC35...    50   0.095  1
(FI233630) CccaBb022-L4JF CccABb Cajanus cajan genomic clone...    50   0.095  1
(ER886048) ZMMBBc0029K21.rq ZMMBB_VAL Zea mays genomic clone...    50   0.095  1
(AQ013188) CIT-HSP-2298E24.TF CIT-HSP Homo sapiens genomic c...    50   0.095  1
(EI491175) PV_GBa0107G01.r PV_GBa Phaseolus vulgaris genomic...    50   0.095  1
(ED732170) GM_WBb0089L15.f GM_WBb Glycine max genomic clone ...    50   0.095  1
(ED520086) KBrB107B12F KBrB, Brassica rapa BamHI BAC library...    50   0.095  1
(ED373854) AUAC-aba08d08.b1 Ascaris suum whole genome shotgu...    50   0.095  1
(DX947623) CHORI105-39N9.TF CHORI105.pEpiFOS5 Trypanosoma cr...    50   0.095  1
(CZ707159) OC__Ba0026I13.f OC__Ba Oryza coarctata genomic cl...    50   0.095  1
(CG419148) ZMMBBc0029K21r ZMMBBc (EcoRI) Zea mays subsp. may...    50   0.095  1
(CC387092) PUHII80TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    50   0.095  1
(BZ783554) PUFAV53TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    50   0.095  1
(BX180170) Danio rerio genomic clone DKEY-183P13, genomic su...    50   0.095  1
(ES272982) TPAF-aaa01g12.g1 T.spiralis_EST Trichinella spira...    50   0.095  1
(EH254765) JGI_ACAC801.fwd ACAC Phakopsora pachyrhizi TW72-1...    50   0.095  1
(EB603109) AGENCOURT_56960073 D. grimshawi EST Drosophila gr...    50   0.095  1
(DC221660) Plasmodium berghei strain ANKA cDNA clone:MZ00460...    50   0.095  1
(DC211992) Plasmodium berghei strain ANKA cDNA clone:MG01321...    50   0.095  1
(DC205084) Plasmodium berghei strain ANKA cDNA clone:MG00462...    50   0.095  1
(AU086998) Plasmodium falciparum 3D7 cDNA clone from Sugano ...    50   0.095  1
(CV563522) taj74b10.y1 Hydra EST UCI 6 Hydra magnipapillata ...    50   0.095  1
(CN848554) PG07041G11 Ginseng cDNA library from MeJA treated...    50   0.095  1
(BU496998) PfESToab61f04.y1 Plasmodium falciparum 3D7 asexua...    50   0.095  1
(BP517629) Hydra magnipapillata cDNA, clone:hmp_14382.             50   0.095  1
(BP114403) Plasmodium berghei strain ANKA cDNA, clone: FCPb2...    50   0.095  1
(BP113575) Plasmodium berghei strain ANKA cDNA, clone: FCPb0...    50   0.095  1
(GE715186) CBUP4004.g1 B.anynana_wing.4-6d_2-10kb Bicyclus a...    50   0.095  1
(GE715184) CBUP1544.b1 B.anynana_wing.4-6d_2-10kb Bicyclus a...    50   0.095  1
(FG464577) 020312KAMA004762HT (KAMA) Actinidia hemsleyana ro...    50   0.095  1
(FG464327) 020312KAMA004487HT (KAMA) Actinidia hemsleyana ro...    50   0.095  1
(EY812661) PT11-C1-900-030-G09-CT.F Poncirus trifoliata leaf...    50   0.095  1
(EY339858) CAWY9951.rev CAWY Helobdella robusta Subtracted E...    50   0.095  1
(EY330439) CAWY3479.rev CAWY Helobdella robusta Subtracted E...    50   0.095  1
(EY328608) CAWY1715.rev CAWY Helobdella robusta Subtracted E...    50   0.095  1
(EY324921) CAWY10598.rev CAWY Helobdella robusta Subtracted ...    50   0.095  1
(EY305411) CAWX19358.rev CAWX Helobdella robusta Primary Ear...    50   0.095  1

>(AU037680) Dictyostelium discoideum slug cDNA, clone SSE167.
          Length = 396

 Score =  168 bits (85), Expect(2) = 5e-73
 Identities = 85/85 (100%)
 Strand = Plus / Plus


Query: 495 tttcaagttaattttgtgaaatataaattatttagagtctcattacaaatttaaatcaga 554
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tttcaagttaattttgtgaaatataaattatttagagtctcattacaaatttaaatcaga 370


Query: 555 ataagaaaataataataataaatta 579
           |||||||||||||||||||||||||
Sbjct: 371 ataagaaaataataataataaatta 395

 Score =  143 bits (72), Expect(2) = 5e-73
 Identities = 72/72 (100%)
 Strand = Plus / Plus


Query: 304 caaaatagttgttacattttcgtgcacatcacagttatatatatatatttatttattaat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 caaaatagttgttacattttcgtgcacatcacagttatatatatatatttatttattaat 179


Query: 364 attccaatcaaa 375
           ||||||||||||
Sbjct: 180 attccaatcaaa 191

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 514,158,143
Number of extensions: 86111521
Number of successful extensions: 38443262
Number of sequences better than 10.0: 13923
Length of query: 579
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 556
Effective length of database: 99,442,330,388
Effective search space: 55289935695728
Effective search space used: 55289935695728
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U04954-1 (Contig-U04954-1Q) /CSM_Contig/Contig-U04954-1Q.Seq.d
         (579 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE016827_1221(AE016827|pid:none) Mannheimia succiniciproducens M...    32   9.5
AE014186_428(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    32   9.6

>AE016827_1221(AE016827|pid:none) Mannheimia succiniciproducens
           MBEL55E, complete genome.
          Length = 1030

 Score = 32.3 bits (72), Expect = 9.5
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 323 SCTSQLYIYIYLLIFQSNFFFFYIWTYIKPS 415
           +C SQ  I I +  F+S FF+FY   Y++PS
Sbjct: 679 ACASQCPIKIDVASFRSKFFYFYHQRYVRPS 709

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 337,829,452
Number of extensions: 3117205
Number of successful extensions: 8911
Number of sequences better than 10.0: 2
Number of HSP's gapped: 8648
Number of HSP's successfully gapped: 2
Length of query: 193
Length of database: 1,061,185,681
Length adjustment: 122
Effective length of query: 71
Effective length of database: 662,435,025
Effective search space: 47032886775
Effective search space used: 47032886775
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.87  gvh: 0.23  alm: 0.52  top: 0.70  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.85  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for Contig-U04954-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0