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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04953-1
Contig ID Contig-U04953-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04953-1 (Contig-U04953-1Q) /CSM_Contig/Contig-U04953-1Q.Seq.d
CTTCCAATCCTTTTTTCTCTTTTTTTTTATTTAACATTTATAAAATATAA
ATATGTATGAACTTTCAACCCAGGTTTCGATATTACAATTTGCTTCTCTT
TATTNGGAGTTGGTGGTTTAATTGCATTAATAGTAATTCAGGTATGTTAT
TTATTTTTTATTTTAAAAAATGACATTTAGTTGTTTTTTTTAATAATCTT
TATTTTAATCATTTTTATTATTATTATTATATTTAAATATAATTTATATA
TAAATTATATTTAAATATAAATAATATTACAATATTAATTATATATTAAT
AATATTTATTTTTAAACTTTAGTTATTATTATTAACAGATTTAGAAGGAA
ATGATATATATAAATTCAATTGAATTTTCAAGAAGAATAAACAAATTAAT
TTTACCAGAATATATAATTCAAGCTGTTTTTTCAGTATGGTTCCTTATAA
CATTTAGATTCTTTTTATTTTTATTAAATTCACCAGTTTTAGTTTATCAT
TATTTAAGATATTCAAAAGGTCTCCATAAAGTTGACCCAACTAAAGTTTA
CCAAATGACAAGCAAATTTGGAAATCATTTAATGCTCAAATTAGTTTTTT
ATATGGTTATGTTTTTCGTTTACCTTTTTGTTTTATTATTTAATCTTTTC
AGCGAATAAAGAGAACGATATATATATGTAGAT
Gap no gap
Contig length 683
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 2516349
End point 2515678
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U04953
List of clone(s) 

est1=SSE163E,1,684
Translated Amino Acid sequence 
snpffsfflfniyki*icmnfqprfryynlllfixswwfncinsnsgmlfifyfkk*hlv
vffnnlyfnhfyyyyyi*i*fiyklylninnitiliiy**ylflnfsyyy*qi*KEMIYI
NSIEFSRRINKLILPEYIIQAVFSVWFLITFRFFLFLLNSPVLVYHYLRYSKGLHKVDPT
KVYQMTSKFGNHLMLKLVFYMVMFFVYLFVLLFNLFSE*reryiyvd
Translated Amino Acid sequence (All Frames) 
Frame A:
lpilfslffyltfikykyv*tfnpgfditicfslxgvgglialiviqvcylffilkndi*
lffliifiliifiiiiifkynlyinyi*i*iilqy*lyinniyf*tlviiinrfrrk*yi
*iqlnfqee*tn*fyqni*fklffqygsl*hldsfyfy*ihqf*fiii*diqkvsikltq
lkftk*qanleii*csn*ffiwlcfsftflfyylifsankendiym*


Frame B:
fqsfflfffi*hl*ninmyelstqvsilqfaslyxelvv*lh***fryviyflf*kmtfs
cff**slf*sflllllylniiyi*iifkyk*yyninyiliififkl*lllltdlegndiy
kfn*ifkknkqinftriynsscffsmvpyni*ilfifikftsfslslfkifkrsp*s*pn
*slpndkqiwksfnaqisflygyvfrlpfcfii*sfqrikrtiyicr


Frame C:
snpffsfflfniyki*icmnfqprfryynlllfixswwfncinsnsgmlfifyfkk*hlv
vffnnlyfnhfyyyyyi*i*fiyklylninnitiliiy**ylflnfsyyy*qi*KEMIYI
NSIEFSRRINKLILPEYIIQAVFSVWFLITFRFFLFLLNSPVLVYHYLRYSKGLHKVDPT
KVYQMTSKFGNHLMLKLVFYMVMFFVYLFVLLFNLFSE*reryiyvd
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04953-1 (Contig-U04953-1Q)
/CSM_Contig/Contig-U04953-1Q.Seq.d
         (683 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04953-1 (Contig-U04953-1Q) /CSM_Contig/Conti...   246  3e-65
Contig-U13114-1 (Contig-U13114-1Q) /CSM_Contig/Conti...    36  0.048
Contig-U11541-1 (Contig-U11541-1Q) /CSM_Contig/Conti...    36  0.048
Contig-U13199-1 (Contig-U13199-1Q) /CSM_Contig/Conti...    34  0.19
Contig-U12062-1 (Contig-U12062-1Q) /CSM_Contig/Conti...    34  0.19
Contig-U11842-1 (Contig-U11842-1Q) /CSM_Contig/Conti...    34  0.19
Contig-U11837-1 (Contig-U11837-1Q) /CSM_Contig/Conti...    34  0.19
Contig-U11177-1 (Contig-U11177-1Q) /CSM_Contig/Conti...    34  0.19
Contig-U10700-1 (Contig-U10700-1Q) /CSM_Contig/Conti...    34  0.19
Contig-U06608-1 (Contig-U06608-1Q) /CSM_Contig/Conti...    34  0.19

>Contig-U04953-1 (Contig-U04953-1Q) /CSM_Contig/Contig-U04953-1Q.Seq.d
          Length = 683

 Score =  246 bits (124), Expect = 3e-65
 Identities = 127/127 (100%)
 Strand = Plus / Plus

                                                                       
Query: 29  atttaacatttataaaatataaatatgtatgaactttcaacccaggtttcgatattacaa 88
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29  atttaacatttataaaatataaatatgtatgaactttcaacccaggtttcgatattacaa 88

                                                                       
Query: 89  tttgcttctctttattnggagttggtggtttaattgcattaatagtaattcaggtatgtt 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  tttgcttctctttattnggagttggtggtttaattgcattaatagtaattcaggtatgtt 148

                  
Query: 149 atttatt 155
           |||||||
Sbjct: 149 atttatt 155


 Score =  214 bits (108), Expect = 9e-56
 Identities = 108/108 (100%)
 Strand = Plus / Plus

                                                                       
Query: 344 gaaggaaatgatatatataaattcaattgaattttcaagaagaataaacaaattaatttt 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gaaggaaatgatatatataaattcaattgaattttcaagaagaataaacaaattaatttt 403

                                                           
Query: 404 accagaatatataattcaagctgttttttcagtatggttccttataac 451
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 accagaatatataattcaagctgttttttcagtatggttccttataac 451


 Score =  172 bits (87), Expect = 3e-43
 Identities = 87/87 (100%)
 Strand = Plus / Plus

                                                                       
Query: 507 agatattcaaaaggtctccataaagttgacccaactaaagtttaccaaatgacaagcaaa 566
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 agatattcaaaaggtctccataaagttgacccaactaaagtttaccaaatgacaagcaaa 566

                                      
Query: 567 tttggaaatcatttaatgctcaaatta 593
           |||||||||||||||||||||||||||
Sbjct: 567 tttggaaatcatttaatgctcaaatta 593


 Score = 67.9 bits (34), Expect = 1e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 650 cagcgaataaagagaacgatatatatatgtagat 683
           ||||||||||||||||||||||||||||||||||
Sbjct: 650 cagcgaataaagagaacgatatatatatgtagat 683


 Score = 32.2 bits (16), Expect = 0.75
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 362 aaattcaattgaattt 377
           ||||||||||||||||
Sbjct: 377 aaattcaattgaattt 362


>Contig-U13114-1 (Contig-U13114-1Q) /CSM_Contig/Contig-U13114-1Q.Seq.d
          Length = 614

 Score = 36.2 bits (18), Expect = 0.048
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 354 atatatataaattcaatt 371
           ||||||||||||||||||
Sbjct: 279 atatatataaattcaatt 296


>Contig-U11541-1 (Contig-U11541-1Q) /CSM_Contig/Contig-U11541-1Q.Seq.d
          Length = 2580

 Score = 36.2 bits (18), Expect = 0.048
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 394 aattaattttaccagaat 411
           ||||||||||||||||||
Sbjct: 437 aattaattttaccagaat 454


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6853
Number of Sequences: 6905
Number of extensions: 6853
Number of successful extensions: 716
Number of sequences better than 10.0: 63
length of query: 683
length of database: 5,674,871
effective HSP length: 16
effective length of query: 667
effective length of database: 5,564,391
effective search space: 3711448797
effective search space used: 3711448797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7. 5
Homology vs DNA 
Query= Contig-U04953-1 (Contig-U04953-1Q) /CSM_Contig/Contig-U04953-1Q.Seq.d
         (683 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU037676) Dictyostelium discoideum slug cDNA, clone SSE163.      186   e-134  6
(AU072314) Dictyostelium discoideum slug cDNA, clone SSE163.      147   2e-49  2
(CZ937419) 257024 Tomato EcoRI BAC Library Solanum lycopersi...    40   0.34   2
(CU929862) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.44   1
(EK518397) 1095515508940 Global-Ocean-Sampling_GS-32-01-01-1...    40   1.1    2
(EK499356) 1095505202538 Global-Ocean-Sampling_GS-32-01-01-1...    40   1.1    2
(EK568829) 1095521059539 Global-Ocean-Sampling_GS-32-01-01-1...    40   1.2    2
(EK565917) 1095521040723 Global-Ocean-Sampling_GS-32-01-01-1...    40   1.2    2
(BX120011) Zebrafish DNA sequence from clone DKEY-18O5 in li...    46   1.8    1
(AC109831) Mus musculus BAC clone RP24-104B17 from chromosom...    46   1.8    1
(AL358372) Human DNA sequence from clone RP11-350E19 on chro...    46   1.8    1
(AL138783) Human DNA sequence from clone RP5-1165D20 on chro...    46   1.8    1
(AC087224) Homo sapiens chromosome 18, clone RP11-52C21, com...    46   1.8    1
(CU856433) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.8    1
(AC026031) Homo sapiens chromosome 18 clone RP11-52C21, WORK...    46   1.8    1
(CU183096) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   1.8    1
(CT583676) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.8    1
(AC213367) Pongo abelii chromosome UNKNOWN clone CH276-163K4...    46   1.8    1
(AC187265) Zea mays chromosome 3 clone CH201-13B4; ZMMBBc001...    46   1.8    1
(EK194393) 1095460031779 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.8    1
(EK106123) 1092963051164 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.8    1
(EK096461) 1092962040046 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.8    1
(EJ906283) 1093018514830 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.8    1
(AM614603) Entamoeba invadens IP1 GSS, clone inv050f04.p1k.        46   1.8    1
(EJ435762) 1093015279318 Global-Ocean-Sampling_GS-28-01-01-1...    46   1.8    1
(EJ146573) 1092343719626 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.8    1
(ES218131) MpFVN_ag2_O14 Myzus persicae, line F001, PLRV fre...    46   1.8    1
(EE263878) C12_C12gf2n23_pDNRf_505198 Myzus persicae, line G...    46   1.8    1
(CN586521) USDA-FP_129593 Acyrthosiphon pisum, Pea Aphid Acy...    46   1.8    1
(FF330430) 280443287 Pea aphid whole body normalized full le...    46   1.8    1
(FF328712) 280438189 Pea aphid whole body normalized full le...    46   1.8    1
(FF314868) 279397345 Pea aphid whole body normalized full le...    46   1.8    1
(FF312545) 279385510 Pea aphid whole body normalized full le...    46   1.8    1
(EX648328) 256721685 Pea aphid whole body normalized full le...    46   1.8    1
(EX633285) 256578305 Pea aphid whole body normalized full le...    46   1.8    1
(EX603821) 255340975 Pea aphid whole body normalized full le...    46   1.8    1
(EX602610) 255334611 Pea aphid whole body normalized full le...    46   1.8    1
(BX511194) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    42   1.8    3
(AM431814) Vitis vinifera contig VV78X113122.8, whole genome...    44   2.2    2
(AC074364) Homo sapiens chromosome 1 clone RP11-113I24, WORK...    40   3.2    5
(AC113470) Mus musculus chromosome 9, clone RP23-262N17, com...    32   3.4    2
(AC117684) Mus musculus chromosome 9, clone RP23-438A6, comp...    32   3.4    2
(BH659779) BOMBH22TR BO_2_3_KB Brassica oleracea genomic clo...    36   4.0    2
(AX345253) Sequence 324 from Patent WO0200928.                     34   4.1    2
(AC145330) Medicago truncatula clone mth2-17l1, complete seq...    40   5.0    3
(AM434490) Vitis vinifera contig VV78X009844.10, whole genom...    36   6.1    3
(BX842701) Zebrafish DNA sequence from clone CH211-223L2.          44   6.9    1
(AL935130) Mouse DNA sequence from clone RP23-452B16 on chro...    44   6.9    1
(AL731800) Mouse DNA sequence from clone RP23-358E7 on chrom...    44   6.9    1
(AC174799) Mus musculus BAC clone CH25-502A9 from chromosome...    44   6.9    1
(AC156794) Mus musculus BAC clone RP24-149L24 from chromosom...    44   6.9    1
(AM481660) Vitis vinifera contig VV78X164727.2, whole genome...    44   6.9    1
(AM474448) Vitis vinifera contig VV78X065840.11, whole genom...    44   6.9    1
(AM443288) Vitis vinifera contig VV78X117011.3, whole genome...    44   6.9    1
(AM433088) Vitis vinifera contig VV78X106498.5, whole genome...    44   6.9    1
(GC698291) Sequence 13536 from patent US 6812339.                  44   6.9    1
(AF533019) Homo sapiens growth arrest and DNA-damage-inducib...    44   6.9    1
(AC005624) Homo sapiens chromosome 19, cosmid R30017, comple...    44   6.9    1
(AC157902) Mus musculus chromosome 18 clone RP23-336C20 map ...    44   6.9    1
(AC129734) Rattus norvegicus clone CH230-432I20, WORKING DRA...    44   6.9    1
(AC128166) Rattus norvegicus clone CH230-80L18, *** SEQUENCI...    44   6.9    1
(AC111806) Rattus norvegicus clone CH230-31L4, *** SEQUENCIN...    44   6.9    1
(FP015846) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.9    1
(CU655934) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.9    1
(AC094179) Rattus norvegicus clone CH230-2P21, WORKING DRAFT...    44   6.9    1
(AC231912) Choloepus hoffmanni clone CH281-631C4, WORKING DR...    44   6.9    1
(AC224582) Bos taurus clone CH240-481H21, WORKING DRAFT SEQU...    44   6.9    1
(AC201461) Strongylocentrotus purpuratus clone R3-3040D21, W...    44   6.9    1
(AC182411) Bos taurus clone CH240-481H5, WORKING DRAFT SEQUE...    44   6.9    1
(AC180186) Strongylocentrotus purpuratus clone R3-3003J22, W...    44   6.9    1
(AC176073) Strongylocentrotus purpuratus clone R3-1H23, WORK...    44   6.9    1
(AC164717) Bos taurus clone CH240-160J2, WORKING DRAFT SEQUE...    44   6.9    1
(BH164546) ENTRO36TR Entamoeba histolytica Sheared DNA Entam...    44   6.9    1
(BH132987) ENTOW90TF Entamoeba histolytica Sheared DNA Entam...    44   6.9    1
(AZ668279) ENTME45TR Entamoeba histolytica Sheared DNA Entam...    44   6.9    1
(ET747929) CHO_OF287xe09r1.ab1 CHO_OF Nicotiana tabacum geno...    44   6.9    1
(ET072478) QM0AAA7AA08RM1 CCL1 Citrus clementina genomic clo...    44   6.9    1
(DH774080) Rattus norvegicus DNA, BAC clone: RNB1-360A11, 3'...    44   6.9    1
(DE354245) Bombyx mori genomic DNA, BAC clone:BET_075_L05.         44   6.9    1
(CE074109) tigr-gss-dog-17000323641194 Dog Library Canis lup...    44   6.9    1
(DW093765) CLPY4977.b1_B22.ab1 CLP(XYZ) lettuce perennis Lac...    44   6.9    1
(CF788187) 856945 MARC 4PIG Sus scrofa cDNA 3', mRNA sequence.     44   6.9    1
(CF787619) 855537 MARC 4PIG Sus scrofa cDNA 5', mRNA sequence.     44   6.9    1
(FG088231) CMRC-FF-IH0-ack-e-01-0-CMRC.r1 Ceratitis capitata...    44   6.9    1
(FG087364) CMRC-FF-IH0-acg-j-24-0-CMRC.r1 Ceratitis capitata...    44   6.9    1
(EY020973) CBAB520.g2:P T. versicolor self root extracts rev...    44   6.9    1
(EY020972) CBAB520.b2:P T. versicolor self root extracts rev...    44   6.9    1
(CP000678) Methanobrevibacter smithii ATCC 35061, complete g...    44   6.9    1
(AE017245) Mycoplasma synoviae 53, complete genome.                44   6.9    1
(AE015450) Mycoplasma gallisepticum strain R complete genome.      44   6.9    1
(AB261975) Staphylococcus aureus DNA, J1 region of typeII.4 ...    44   6.9    1
(CU137660) Medicago truncatula chromosome 5 clone mth2-56j22...    38   7.1    4
(AM423763) Vitis vinifera contig VV78X110982.27, whole genom...    40   7.1    2
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    36   7.7    7
(X95275) Plasmodium falciparum complete gene map of plastid-...    38   9.4    4

>(AU037676) Dictyostelium discoideum slug cDNA, clone SSE163.
          Length = 620

 Score =  186 bits (94), Expect(6) = e-134
 Identities = 94/94 (100%)
 Strand = Plus / Plus


Query: 358 atataaattcaattgaattttcaagaagaataaacaaattaattttaccagaatatataa 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 atataaattcaattgaattttcaagaagaataaacaaattaattttaccagaatatataa 343


Query: 418 ttcaagctgttttttcagtatggttccttataac 451
           ||||||||||||||||||||||||||||||||||
Sbjct: 344 ttcaagctgttttttcagtatggttccttataac 377

 Score =  172 bits (87), Expect(6) = e-134
 Identities = 87/87 (100%)
 Strand = Plus / Plus


Query: 507 agatattcaaaaggtctccataaagttgacccaactaaagtttaccaaatgacaagcaaa 566
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agatattcaaaaggtctccataaagttgacccaactaaagtttaccaaatgacaagcaaa 492


Query: 567 tttggaaatcatttaatgctcaaatta 593
           |||||||||||||||||||||||||||
Sbjct: 493 tttggaaatcatttaatgctcaaatta 519

 Score = 99.6 bits (50), Expect(6) = e-134
 Identities = 52/53 (98%)
 Strand = Plus / Plus


Query: 70  ccaggtttcgatattacaatttgcttctctttattnggagttggtggtttaat 122
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1   ccaggtttcgatattacaatttgcttctctttattgggagttggtggtttaat 53

 Score = 67.9 bits (34), Expect(6) = e-134
 Identities = 34/34 (100%)
 Strand = Plus / Plus


Query: 650 cagcgaataaagagaacgatatatatatgtagat 683
           ||||||||||||||||||||||||||||||||||
Sbjct: 576 cagcgaataaagagaacgatatatatatgtagat 609

 Score = 48.1 bits (24), Expect(6) = e-134
 Identities = 24/24 (100%)
 Strand = Plus / Plus


Query: 123 tgcattaatagtaattcaggtatg 146
           ||||||||||||||||||||||||
Sbjct: 53  tgcattaatagtaattcaggtatg 76

 Score = 30.2 bits (15), Expect(6) = e-134
 Identities = 15/15 (100%)
 Strand = Plus / Plus


Query: 344 gaaggaaatgatata 358
           |||||||||||||||
Sbjct: 274 gaaggaaatgatata 288

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 546,703,927
Number of extensions: 36271239
Number of successful extensions: 3487964
Number of sequences better than 10.0: 95
Length of query: 683
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 659
Effective length of database: 99,340,224,878
Effective search space: 65465208194602
Effective search space used: 65465208194602
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U04953-1 (Contig-U04953-1Q) /CSM_Contig/Contig-U04953-1Q.Seq.d
         (683 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC152498_5(AC152498|pid:none) Medicago truncatula clone mth2-38m...    52   2e-05
EU960753_1(EU960753|pid:none) Zea mays clone 228317 ER-derived v...    52   2e-05
FB786681_1(FB786681|pid:none) Sequence 5954 from Patent WO200803...    49   2e-04
AK227496_1(AK227496|pid:none) Arabidopsis thaliana mRNA for hypo...    48   2e-04
FB786701_1(FB786701|pid:none) Sequence 5974 from Patent WO200803...    48   2e-04
(P38312) RecName: Full=ER-derived vesicles protein ERV15;  &FB78...    48   3e-04
FB786751_1(FB786751|pid:none) Sequence 6024 from Patent WO200803...    47   5e-04
FB786743_1(FB786743|pid:none) Sequence 6016 from Patent WO200803...    47   7e-04
EF087497_1(EF087497|pid:none) Picea sitchensis clone WS02730_P01...    46   0.001
AC069472_5(AC069472|pid:none) Arabidopsis thaliana chromosome 3 ...    45   0.002
AP002063_13(AP002063|pid:none) Arabidopsis thaliana genomic DNA,...    45   0.002
FB786677_1(FB786677|pid:none) Sequence 5950 from Patent WO200803...    45   0.003
AM485644_4(AM485644|pid:none) Vitis vinifera contig VV78X019287....    44   0.005
A89261(A89261)protein T09E8.3 [imported] - Caenorhabditis elegans      43   0.008
AM482822_1(AM482822|pid:none) Vitis vinifera contig VV78X062065....    43   0.008
FB786679_1(FB786679|pid:none) Sequence 5952 from Patent WO200803...    41   0.030
FB786683_1(FB786683|pid:none) Sequence 5956 from Patent WO200803...    41   0.030
CU928180_293(CU928180|pid:none) Kluyveromyces thermotolerans str...    41   0.030
AP008212_201(AP008212|pid:none) Oryza sativa (japonica cultivar-...    41   0.030
BC078462_1(BC078462|pid:none) Xenopus laevis MGC85215 protein, m...    41   0.039
(Q5RDB5) RecName: Full=Protein cornichon homolog;  &CR857999_1(C...    41   0.039
AK168154_1(AK168154|pid:none) Mus musculus CRL-1722 L5178Y-R cDN...    41   0.039
BC080958_1(BC080958|pid:none) Xenopus tropicalis cornichon homol...    41   0.039
FN392319_998(FN392319|pid:none) Pichia pastoris GS115 chromosome...    40   0.051
(Q9P6K6) RecName: Full=ER-derived vesicles protein erv14;  &AL35...    40   0.066
BT056744_1(BT056744|pid:none) Salmo salar clone ssal-eve-502-265...    39   0.11
AE016814_337(AE016814|pid:none) Ashbya gossypii (= Eremothecium ...    39   0.11
(P53173) RecName: Full=ER-derived vesicles protein ERV14;  &AY55...    39   0.11
BT078847_1(BT078847|pid:none) Esox lucius clone eluc-evq-522-015...    39   0.11
BC100049_1(BC100049|pid:none) Danio rerio cornichon homolog (Dro...    39   0.15
BX927407_5(BX927407|pid:none) Zebrafish DNA sequence from clone ...    39   0.15
FB786689_1(FB786689|pid:none) Sequence 5962 from Patent WO200803...    39   0.19
CR382123_234(CR382123|pid:none) Kluyveromyces lactis strain NRRL...    39   0.19
FB786685_1(FB786685|pid:none) Sequence 5958 from Patent WO200803...    38   0.25
FB786763_1(FB786763|pid:none) Sequence 6036 from Patent WO200803...    38   0.25
CR382132_501(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...    38   0.25
AE017343_23(AE017343|pid:none) Cryptococcus neoformans var. neof...    38   0.33
AL049638_16(AL049638|pid:none) Arabidopsis thaliana DNA chromoso...    38   0.33
AC025416_11(AC025416|pid:none) Genomic sequence for Arabidopsis ...    37   0.56
CP001329_377(CP001329|pid:none) Micromonas sp. RCC299 chromosome...    37   0.73
FN357618_3(FN357618|pid:none) Schistosoma mansoni genome sequenc...    37   0.73
CP000882_63(CP000882|pid:none) Hemiselmis andersenii chromosome ...    36   0.95
CP000501_327(CP000501|pid:none) Pichia stipitis CBS 6054 chromos...    36   0.95
(P49858) RecName: Full=Protein cornichon;  &A56724(A56724) &AE01...    36   0.95
CU633461_75(CU633461|pid:none) Podospora anserina genomic DNA ch...    36   0.95
EU959234_1(EU959234|pid:none) Zea mays clone 212731 ER-derived v...    35   2.1
FN314343_1(FN314343|pid:none) Schistosoma japonicum isolate Anhu...    35   2.1
AM270149_2(AM270149|pid:none) Aspergillus niger contig An07c0320...    35   2.8
AP007151_1352(AP007151|pid:none) Aspergillus oryzae RIB40 genomi...    35   2.8
(P52159) RecName: Full=Protein cornichon;                              35   2.8
FM992690_667(FM992690|pid:none) Candida dubliniensis CD36 chromo...    34   3.6
AM920433_574(AM920433|pid:none) Penicillium chrysogenum Wisconsi...    34   3.6
FB786723_1(FB786723|pid:none) Sequence 5996 from Patent WO200803...    33   8.1
BT080175_1(BT080175|pid:none) Caligus clemensi clone ccle-evs-51...    33   8.1
AK013789_1(AK013789|pid:none) Mus musculus adult male hippocampu...    33   8.1

>AC152498_5(AC152498|pid:none) Medicago truncatula clone mth2-38m20,
           complete sequence.
          Length = 137

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 26/73 (35%), Positives = 39/73 (53%)
 Frame = +3

Query: 348 EMIYINSIEFSRRINKLILPEYIIQAVFSVWXXXXXXXXXXXXNSPVLVYHYLRYSKGLH 527
           E  YIN  + + RINK++LPEYI  A    +             +P L Y+Y  YS+G H
Sbjct: 32  EFDYINPYDSASRINKMVLPEYITVAALCGFYLVTGHWVMALLCAPYLYYNYRLYSQGKH 91

Query: 528 KVDPTKVYQMTSK 566
            VD T+++ M ++
Sbjct: 92  LVDVTEIFNMLAR 104

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 697,721,116
Number of extensions: 10454419
Number of successful extensions: 24222
Number of sequences better than 10.0: 55
Number of HSP's gapped: 24195
Number of HSP's successfully gapped: 55
Length of query: 227
Length of database: 1,061,185,681
Length adjustment: 124
Effective length of query: 103
Effective length of database: 655,898,129
Effective search space: 67557507287
Effective search space used: 67557507287
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.75  gvh: 0.54  alm: 0.17  top: 0.57  tms: 0.13  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 16.0 %: vacuolar
	 16.0 %: plasma membrane
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for Contig-U04953-1 is end
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0