NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04943-1
Contig ID Contig-U04943-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04943-1 (Contig-U04943-1Q) /CSM_Contig/Contig-U04943-1Q.Seq.d
TAAAAATAAATATAAATAATGAGTGTATTATCTAGAGACGAAATTCTTAA
ATCATTAGCATCAGGTGATATTAAAATTACACCAGGATATGAAGAGAAAT
CAATTGGTGCAGCATCAATTGATTTAACATTAAGTAATGAATTTAGAGTG
TTTAAAAAGAGAGATAATAGTGATACCATTATAGTTTCAGAATCAATTAA
TTACCAAGATTTTTCAGAATTATCAGTATTAAAAGAGGGTGAAAGATTTA
TTTTAGAACCCGGTCATATGTGTTTAGGTATTACTGAAGAAACTATCGAA
TTATCACCAAAGCTT
Gap no gap
Contig length 315
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 3061576
End point 3061260
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U04943
List of clone(s) 

est1=SSE118F,1,316
Translated Amino Acid sequence 
*k*i*IMSVLSRDEILKSLASGDIKITPGYEEKSIGAASIDLTLSNEFRVFKKRDNSDTI
IVSESINYQDFSELSVLKEGERFILEPGHMCLGITEETIELSPKL
Translated Amino Acid sequence (All Frames) 
Frame A:
*k*i*IMSVLSRDEILKSLASGDIKITPGYEEKSIGAASIDLTLSNEFRVFKKRDNSDTI
IVSESINYQDFSELSVLKEGERFILEPGHMCLGITEETIELSPKL


Frame B:
knkyk**vyyletkflnh*hqvilklhqdmkrnqlvqhqli*h*vmnleclkreiivipl
*fqnqlitkifqnyqy*krvkdlf*npvicv*vllkklsnyhqs


Frame C:
kininnecii*rrns*iisir*y*nytri*reinwcsin*fnik**i*sv*ker***yhy
sfrin*lprffriisikrg*kiyfrtrsyvfryy*rnyriitka
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04943-1 (Contig-U04943-1Q)
/CSM_Contig/Contig-U04943-1Q.Seq.d
         (315 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04943-1 (Contig-U04943-1Q) /CSM_Contig/Conti...   624  e-179
Contig-U10965-1 (Contig-U10965-1Q) /CSM_Contig/Conti...    38  0.005
Contig-U13884-1 (Contig-U13884-1Q) /CSM_Contig/Conti...    36  0.022
Contig-U04580-1 (Contig-U04580-1Q) /CSM_Contig/Conti...    36  0.022
Contig-U02677-1 (Contig-U02677-1Q) /CSM_Contig/Conti...    36  0.022
Contig-U11912-1 (Contig-U11912-1Q) /CSM_Contig/Conti...    34  0.085
Contig-U11793-1 (Contig-U11793-1Q) /CSM_Contig/Conti...    34  0.085
Contig-U10376-1 (Contig-U10376-1Q) /CSM_Contig/Conti...    34  0.085
Contig-U03678-1 (Contig-U03678-1Q) /CSM_Contig/Conti...    34  0.085
Contig-U03009-1 (Contig-U03009-1Q) /CSM_Contig/Conti...    34  0.085

>Contig-U04943-1 (Contig-U04943-1Q) /CSM_Contig/Contig-U04943-1Q.Seq.d
          Length = 315

 Score =  624 bits (315), Expect = e-179
 Identities = 315/315 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaaaataaatataaataatgagtgtattatctagagacgaaattcttaaatcattagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   taaaaataaatataaataatgagtgtattatctagagacgaaattcttaaatcattagca 60

                                                                       
Query: 61  tcaggtgatattaaaattacaccaggatatgaagagaaatcaattggtgcagcatcaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcaggtgatattaaaattacaccaggatatgaagagaaatcaattggtgcagcatcaatt 120

                                                                       
Query: 121 gatttaacattaagtaatgaatttagagtgtttaaaaagagagataatagtgataccatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatttaacattaagtaatgaatttagagtgtttaaaaagagagataatagtgataccatt 180

                                                                       
Query: 181 atagtttcagaatcaattaattaccaagatttttcagaattatcagtattaaaagagggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atagtttcagaatcaattaattaccaagatttttcagaattatcagtattaaaagagggt 240

                                                                       
Query: 241 gaaagatttattttagaacccggtcatatgtgtttaggtattactgaagaaactatcgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gaaagatttattttagaacccggtcatatgtgtttaggtattactgaagaaactatcgaa 300

                          
Query: 301 ttatcaccaaagctt 315
           |||||||||||||||
Sbjct: 301 ttatcaccaaagctt 315


>Contig-U10965-1 (Contig-U10965-1Q) /CSM_Contig/Contig-U10965-1Q.Seq.d
          Length = 1820

 Score = 38.2 bits (19), Expect = 0.005
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 1  taaaaataaatataaataa 19
          |||||||||||||||||||
Sbjct: 42 taaaaataaatataaataa 60


>Contig-U13884-1 (Contig-U13884-1Q) /CSM_Contig/Contig-U13884-1Q.Seq.d
          Length = 1710

 Score = 36.2 bits (18), Expect = 0.022
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 227 tattaaaagagggtgaaagatt 248
           |||||| |||||||||||||||
Sbjct: 395 tattaagagagggtgaaagatt 416


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7276
Number of Sequences: 6905
Number of extensions: 7276
Number of successful extensions: 920
Number of sequences better than 10.0: 338
length of query: 315
length of database: 5,674,871
effective HSP length: 15
effective length of query: 300
effective length of database: 5,571,296
effective search space: 1671388800
effective search space used: 1671388800
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7. 5
Homology vs DNA 
Query= Contig-U04943-1 (Contig-U04943-1Q) /CSM_Contig/Contig-U04943-1Q.Seq.d
         (315 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU072290) Dictyostelium discoideum slug cDNA, clone SSE118.      476   e-130  1
(FF279045) CR_C04P0_06D06_m13reverselong Cryptopygus antarct...    38   0.002  2
(AB232922) Oryzias latipes hox gene cluster, complete cds, c...    52   0.013  1
(DH145173) Oryzias latipes Fosmid clone:GOLWFno410_l12, forw...    52   0.013  1
(FF278928) CR_C04P0_02G08_m13reverselong Cryptopygus antarct...    38   0.036  2
(FF278742) CR_C03P0_03D08_m13reverselong Cryptopygus antarct...    38   0.039  2
(AC147437) Gallus gallus BAC clone CH261-80L21 from chromoso...    48   0.20   1
(AC148229) Gallus gallus clone CH261-79F18, WORKING DRAFT SE...    48   0.20   1
(EJ751176) 1092963037214 Global-Ocean-Sampling_GS-30-02-01-1...    40   0.72   2
(DE347923) Bombyx mori genomic DNA, BAC clone:BET_056_C22.         46   0.78   1
(CU141156) Equus caballus GSS, BAC clone CH241-264L12, SP6 e...    46   0.78   1
(CT943263) Equus caballus GSS, BAC clone CH241-23H7, SP6 end...    46   0.78   1
(CK533123) rswgb0_001046.y1 swg Bombyx mori cDNA, mRNA seque...    46   0.78   1
(EJ773331) 1092977702287 Global-Ocean-Sampling_GS-30-02-01-1...    40   0.84   2
(CU928494) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   1.1    3
(CU915609) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   1.6    2
(AC142337) Pan troglodytes BAC clone RP43-39F23 from chromos...    36   1.7    5
(CR354538) Zebrafish DNA sequence from clone CH211-16K18 in ...    36   1.8    3
(CR385074) Zebrafish DNA sequence from clone CH211-258K6 in ...    38   1.9    5
(CR954295) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   1.9    3
(CR956645) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   1.9    3
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    34   2.6    5
(BX294123) Zebrafish DNA sequence from clone DKEYP-16G7 in l...    36   2.8    3
(CR293512) Zebrafish DNA sequence from clone DKEY-27M20 in l...    34   2.8    4
(AJ298668) Myzocallis pictus mitochondrial ATP6 gene for ATP...    44   3.1    1
(AC141034) Rattus norvegicus clone CH230-466E8, *** SEQUENCI...    44   3.1    1
(AC127780) Rattus norvegicus clone CH230-462L16, *** SEQUENC...    44   3.1    1
(AC106172) Rattus norvegicus clone CH230-218O19, *** SEQUENC...    44   3.1    1
(FP102893) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   3.1    1
(CU638714) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   3.1    1
(AC184556) Strongylocentrotus purpuratus clone R3-7B10, WORK...    44   3.1    1
(AC180750) Strongylocentrotus purpuratus clone R3-3083F12, W...    44   3.1    1
(AC180204) Strongylocentrotus purpuratus clone R3-3E15, WORK...    44   3.1    1
(AC176513) Strongylocentrotus purpuratus clone R3-3073A17, W...    44   3.1    1
(EJ208704) 1092345350761 Global-Ocean-Sampling_GS-27-01-01-1...    44   3.1    1
(DN676388) CFW92-C04.y1d-s SHGC-CFW Gasterosteus aculeatus c...    44   3.1    1
(DC222423) Plasmodium berghei strain ANKA cDNA clone:MZ00583...    44   3.1    1
(BQ546303) EST629930 TpMugugaSh01 Theileria parva cDNA clone...    44   3.1    1
(EJ044404) 1095454112553 Global-Ocean-Sampling_GS-26-01-01-1...    38   3.2    2
(CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ...    38   3.4    6
(AC217569) Populus trichocarpa clone POP004-D09, complete se...    36   3.5    4
(AG381890) Mus musculus molossinus DNA, clone:MSMg01-192B13....    40   4.7    2
(AC186964) Canis lupus familiaris chromosome 16 clone XX-204...    34   5.0    5
(EJ193789) 1092344220246 Global-Ocean-Sampling_GS-27-01-01-1...    30   5.1    3
(EH665708) 25.2C10 Transformed tobacco Lambda Zap II library...    38   5.5    2
(AC095342) Rattus norvegicus clone CH230-131D19, WORKING DRA...    30   5.6    2
(AC114519) Rattus norvegicus clone CH230-135I20, *** SEQUENC...    30   5.6    2
(AC126509) Rattus norvegicus clone CH230-164A3, WORKING DRAF...    36   5.8    5
(AC091921) Homo sapiens chromosome 5 clone RP11-256N5, compl...    36   5.9    4
(AC053500) Homo sapiens chromosome 6 clone RP11-259L5, WORKI...    36   6.4    2
(AC169047) Bos taurus clone CH240-238L16, WORKING DRAFT SEQU...    38   7.1    2
(DX060515) KBrB066M06R KBrB, Brassica rapa BamHI BAC library...    32   7.2    2
(AC150705) Medicago truncatula chromosome 8 clone mth2-132b1...    34   7.4    5
(AC221752) Bos taurus clone CH240-386D20, WORKING DRAFT SEQU...    38   7.5    4
(CZ960288) 305928 Tomato EcoRI BAC Library Solanum lycopersi...    32   7.7    2
(AC172282) Bos taurus clone CH240-260F16, WORKING DRAFT SEQU...    40   7.8    2
(AC115683) Dictyostelium discoideum chromosome 2 map complem...    32   7.9    5
(AC139675) Mus musculus chromosome 3, clone RP23-328D16, com...    36   8.9    4
(CU582884) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   8.9    3
(CR352226) Zebrafish DNA sequence from clone CH211-209L18 in...    38   9.3    4
(EJ236664) 1095297023601 Global-Ocean-Sampling_GS-27-01-01-1...    34   9.3    2
(EJ681562) 1092955133645 Global-Ocean-Sampling_GS-30-02-01-1...    34   9.9    2

>(AU072290) Dictyostelium discoideum slug cDNA, clone SSE118.
          Length = 240

 Score =  476 bits (240), Expect = e-130
 Identities = 240/240 (100%)
 Strand = Plus / Plus


Query: 1   taaaaataaatataaataatgagtgtattatctagagacgaaattcttaaatcattagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   taaaaataaatataaataatgagtgtattatctagagacgaaattcttaaatcattagca 60


Query: 61  tcaggtgatattaaaattacaccaggatatgaagagaaatcaattggtgcagcatcaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcaggtgatattaaaattacaccaggatatgaagagaaatcaattggtgcagcatcaatt 120


Query: 121 gatttaacattaagtaatgaatttagagtgtttaaaaagagagataatagtgataccatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatttaacattaagtaatgaatttagagtgtttaaaaagagagataatagtgataccatt 180


Query: 181 atagtttcagaatcaattaattaccaagatttttcagaattatcagtattaaaagagggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atagtttcagaatcaattaattaccaagatttttcagaattatcagtattaaaagagggt 240

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 463,872,095
Number of extensions: 29383149
Number of successful extensions: 2556855
Number of sequences better than 10.0: 63
Length of query: 315
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 292
Effective length of database: 99,442,330,388
Effective search space: 29037160473296
Effective search space used: 29037160473296
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U04943-1 (Contig-U04943-1Q) /CSM_Contig/Contig-U04943-1Q.Seq.d
         (315 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CT971583_949(CT971583|pid:none) Synechococcus WH7803 complete ge...    76   3e-13
CP001124_2135(CP001124|pid:none) Geobacter bemidjiensis Bem, com...    66   4e-10
(Q8TYK5) RecName: Full=Probable deoxycytidine triphosphate deami...    63   4e-09
CP001276_852(CP001276|pid:none) Thermomicrobium roseum DSM 5159 ...    62   8e-09
(Q3IMI4) RecName: Full=Probable deoxycytidine triphosphate deami...    56   5e-07
(B0R2Y7) RecName: Full=Probable deoxycytidine triphosphate deami...    51   1e-05
(A4QHN8) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    51   1e-05
(A3D5E2) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    49   4e-05
CP001620_255(CP001620|pid:none) Corynebacterium kroppenstedtii D...    49   4e-05
BA000035_2659(BA000035|pid:none) Corynebacterium efficiens YS-31...    49   4e-05
CP000109_1043(CP000109|pid:none) Thiomicrospira crunogena XCL-2,...    49   4e-05
(A5UFT9) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    49   7e-05
AY375291_9(AY375291|pid:none) Buchnera aphidicola (Chaitophorus ...    48   9e-05
(B5YB40) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    48   9e-05
AF222060_63(AF222060|pid:none) Halorubrum phage HF2, complete ge...    48   9e-05
(Q0HVX9) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    48   9e-05
(A5UB16) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    48   1e-04
(Q8EDX5) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    48   1e-04
CP000249_4300(CP000249|pid:none) Frankia sp. CcI3, complete geno...    48   1e-04
(Q15UL9) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    47   2e-04
CP001616_1509(CP001616|pid:none) Tolumonas auensis DSM 9187, com...    47   2e-04
(Q2RQK4) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    47   2e-04
CP001618_3799(CP001618|pid:none) Beutenbergia cavernae DSM 12333...    47   2e-04
(A9MKX9) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    47   2e-04
(A1T2M8) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    47   2e-04
(A1S795) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    47   3e-04
(Q82EZ9) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    46   4e-04
AP010872_449(AP010872|pid:none) Candidatus Ishikawaella capsulat...    45   6e-04
(Q4JXY1) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    45   6e-04
(Q3IL08) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    45   8e-04
(B0UT66) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    45   8e-04
(B4ESY9) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    45   8e-04
(Q6D7B3) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    45   8e-04
(A6VMP5) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    45   8e-04
(A8AEF5) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    45   0.001
(A0LWS4) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    44   0.001
(A4SML2) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    44   0.001
CP000454_3851(CP000454|pid:none) Arthrobacter sp. FB24, complete...    44   0.002
(Q8D218) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    44   0.002
CP001321_636(CP001321|pid:none) Haemophilus parasuis SH0165, com...    44   0.002
AP011115_5442(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp...    43   0.003
(B1X701) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    43   0.004
CP000750_4214(CP000750|pid:none) Kineococcus radiotolerans SRS30...    43   0.004
(Q9X8W0) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    43   0.004
(A7ZNN9) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    43   0.004
(B2VFR2) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    42   0.005
(A1JTX3) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    42   0.005
(A4WCB5) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    42   0.005
CP001607_1102(CP001607|pid:none) Aggregatibacter aphrophilus NJ8...    42   0.007
(A8GC41) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    42   0.009
AM942444_1836(AM942444|pid:none) Corynebacterium urealyticum DSM...    42   0.009
(Q6NEW7) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    41   0.012
(B1VMF9) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    41   0.012
(Q2NUC6) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    41   0.015
(A0QM15) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    41   0.015
CU458896_4832(CU458896|pid:none) Mycobacterium abscessus chromos...    40   0.020
(Q1LT76) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    40   0.026
A69114(A69114) dCTP deaminase (EC 3.5.4.13) MTH1847 [similarity]...    40   0.026
(Q9CB17) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    40   0.026
(A4X0Z1) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    40   0.026
(Q6AC71) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    40   0.034
CP001341_3616(CP001341|pid:none) Arthrobacter chlorophenolicus A...    40   0.034
(A5TZ48) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    40   0.034
(B2TNM9) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    39   0.044
(Q4JAM0) RecName: Full=Probable deoxycytidine triphosphate deami...    39   0.044
(O27875) RecName: Full=Probable deoxycytidine triphosphate deami...    39   0.044
(A8LWH4) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    39   0.057
(B4U7Y7) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    39   0.075
DQ372942_3(DQ372942|pid:none) Methanococcus voltae putative GMP ...    37   0.22
(B2HP20) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    36   0.37
(Q980T7) RecName: Full=Probable deoxycytidine triphosphate deami...    36   0.49
(B5Y8K7) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    36   0.49
(A0PLM7) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    35   0.63
(B2V937) RecName: Full=Deoxycytidine triphosphate deaminase;    ...    34   1.4
CP000764_2072(CP000764|pid:none) Bacillus cereus subsp. cytotoxi...    34   1.4
FM164764_11(FM164764|pid:none) Stygiolobus rod-shaped virus.           33   2.4
AB237163_77(AB237163|pid:none) Pseudomonas syringae pv. actinidi...    33   3.1
BA000040_5679(BA000040|pid:none) Bradyrhizobium japonicum USDA 1...    33   4.1
AF399011_52(AF399011|pid:none) Pseudomonas phage phiKZ, complete...    32   5.4
CP000851_1913(CP000851|pid:none) Shewanella pealeana ATCC 700345...    32   9.2

>CT971583_949(CT971583|pid:none) Synechococcus WH7803 complete
           genome sequence.
          Length = 174

 Score = 76.3 bits (186), Expect = 3e-13
 Identities = 42/99 (42%), Positives = 63/99 (63%)
 Frame = +1

Query: 19  MSVLSRDEILKSLASGDIKITPGYEEKSIGAASIDLTLSNEFRVFKKRDNSDTIIVSESI 198
           M+VL R  IL+++ SG I ITP ++ + +G AS+DLTL++ FRVF+K    + I V E
Sbjct: 1   MAVLGRQAILQAIDSGVITITP-FKPELVGPASVDLTLASSFRVFRKVH--EVIAVCEHT 57

Query: 199 NYQDFSELSVLKEGERFILEPGHMCLGITEETIELSPKL 315
           +Y+ F++   + EGE  ++ PG   LGIT E + L P L
Sbjct: 58  DYRQFTDKVEVSEGEHILIMPGETILGITRERLRLGPGL 96

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 434,453,315
Number of extensions: 7935115
Number of successful extensions: 15387
Number of sequences better than 10.0: 80
Number of HSP's gapped: 15347
Number of HSP's successfully gapped: 80
Length of query: 105
Length of database: 1,061,185,681
Length adjustment: 73
Effective length of query: 32
Effective length of database: 822,588,977
Effective search space: 26322847264
Effective search space used: 26322847264
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 28 (15.4 bits)
PSORT 

 psg: 0.75  gvh: 0.37  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U04943-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0