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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04937-1
Contig ID Contig-U04937-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U04937-1 (Contig-U04937-1Q) /CSM_Contig/Contig-U04937-1Q.Seq.d
CATTTTTCAAATATTTATCTAAATATTTTTATAAATAAATTATTAAATGA
CAATTATCGATTCTTTTTCTGCAATCGTTACAATTAAAAATAATAAAACA
TTCCAAAATTTAAACAATTTTAATAGTTCATTAGTATATGAAAAATCAAT
GATAACGAGATGGGATCCAAGAAAAACTGTAATTAAAAAAGGATTTTATG
TTGGCCCTGCATATATTTAATTGGAATAGTAATCAATATGTATATATATA
ATTAATATTAATATATAAATATTANTTNATTTNAAAACAAATNCAAATTN
AAATTCCTNNTAATTTTNAAATTTNAATAAAATTNTAAATACTTAATTTN
TTTNTTGTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
Gap no gap
Contig length 466
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 1544002
End point 1543615
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U04937
List of clone(s) 

est1=SSE103E,1,467
Translated Amino Acid sequence 
ifqifi*ifl*iny*MTIIDSFSAIVTIKNNKTFQNLNNFNSSLVYEKSMITRWDPRKTV
IKKGFYVGPAYI*le**siciyiinini*ilxxxktnxnxnsx*fxnxnkixnt*fxxcx
kkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
hfsniylnifinkllndnyrfffcnryn*k**nipkfkqf**fisi*kindnemgskknc
n*krilcwpciyligivinmyiyn*y*yinixxfxnkxkxkflxixkfx*nxkylixxlx
kkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk


Frame B:
ifqifi*ifl*iny*MTIIDSFSAIVTIKNNKTFQNLNNFNSSLVYEKSMITRWDPRKTV
IKKGFYVGPAYI*le**siciyiinini*ilxxxktnxnxnsx*fxnxnkixnt*fxxcx
kkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk


Frame C:
ffkylskyfyk*iik*qlsilflqslqlkiikhski*tilivh*ymknq**rdgiqekl*
lkkdfmlalhifnwnsnqyvyi*liliykyxxixkqxqixipxnfxixikx*ilnxfxvk
kkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04937-1 (Contig-U04937-1Q)
/CSM_Contig/Contig-U04937-1Q.Seq.d
         (466 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04937-1 (Contig-U04937-1Q) /CSM_Contig/Conti...   464  e-131
Contig-U13968-1 (Contig-U13968-1Q) /CSM_Contig/Conti...    42  5e-04
Contig-U10952-1 (Contig-U10952-1Q) /CSM_Contig/Conti...    38  0.008
Contig-U05091-1 (Contig-U05091-1Q) /CSM_Contig/Conti...    38  0.008
Contig-U04658-1 (Contig-U04658-1Q) /CSM_Contig/Conti...    38  0.008
Contig-U14365-1 (Contig-U14365-1Q) /CSM_Contig/Conti...    36  0.032
Contig-U12563-1 (Contig-U12563-1Q) /CSM_Contig/Conti...    36  0.032
Contig-U12276-1 (Contig-U12276-1Q) /CSM_Contig/Conti...    36  0.032
Contig-U11814-1 (Contig-U11814-1Q) /CSM_Contig/Conti...    36  0.032
Contig-U11294-1 (Contig-U11294-1Q) /CSM_Contig/Conti...    36  0.032

>Contig-U04937-1 (Contig-U04937-1Q) /CSM_Contig/Contig-U04937-1Q.Seq.d
          Length = 466

 Score =  464 bits (234), Expect = e-131
 Identities = 234/234 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttttcaaatatttatctaaatatttttataaataaattattaaatgacaattatcga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   catttttcaaatatttatctaaatatttttataaataaattattaaatgacaattatcga 60

                                                                       
Query: 61  ttctttttctgcaatcgttacaattaaaaataataaaacattccaaaatttaaacaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttctttttctgcaatcgttacaattaaaaataataaaacattccaaaatttaaacaattt 120

                                                                       
Query: 121 taatagttcattagtatatgaaaaatcaatgataacgagatgggatccaagaaaaactgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taatagttcattagtatatgaaaaatcaatgataacgagatgggatccaagaaaaactgt 180

                                                                 
Query: 181 aattaaaaaaggattttatgttggccctgcatatatttaattggaatagtaatc 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aattaaaaaaggattttatgttggccctgcatatatttaattggaatagtaatc 234


>Contig-U13968-1 (Contig-U13968-1Q) /CSM_Contig/Contig-U13968-1Q.Seq.d
          Length = 1749

 Score = 42.1 bits (21), Expect = 5e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 99   cattccaaaatttaaacaatt 119
            |||||||||||||||||||||
Sbjct: 1308 cattccaaaatttaaacaatt 1288


>Contig-U10952-1 (Contig-U10952-1Q) /CSM_Contig/Contig-U10952-1Q.Seq.d
          Length = 936

 Score = 38.2 bits (19), Expect = 0.008
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                 
Query: 25 atttttataaataaattattaaa 47
          ||||||||||||| |||||||||
Sbjct: 84 atttttataaatatattattaaa 62


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,313
Number of Sequences: 6905
Number of extensions: 10313
Number of successful extensions: 1669
Number of sequences better than 10.0: 540
length of query: 466
length of database: 5,674,871
effective HSP length: 16
effective length of query: 450
effective length of database: 5,564,391
effective search space: 2503975950
effective search space used: 2503975950
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7. 5
Homology vs DNA 
Query= Contig-U04937-1 (Contig-U04937-1Q) /CSM_Contig/Contig-U04937-1Q.Seq.d
         (466 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU072284) Dictyostelium discoideum slug cDNA, clone SSE103.      416   e-112  1
(AU037628) Dictyostelium discoideum slug cDNA, clone SSE103.       62   2e-05  1
(FH084746) CHO_OF3734xn16f1.ab1 CHO_OF3 Nicotiana tabacum ge...    56   0.001  1
(FH413142) CHO_OF4301xh09f1.ab1 CHO_OF4 Nicotiana tabacum ge...    50   0.002  2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    34   0.003  8
(BX640453) Zebrafish DNA sequence from clone DKEY-9L5 in lin...    54   0.005  1
(AM431181) Vitis vinifera contig VV78X031190.7, whole genome...    54   0.005  1
(AW858137) PM2-CT0336-241299-002-h12 CT0336 Homo sapiens cDN...    36   0.016  2
(BX927356) Zebrafish DNA sequence from clone DKEY-54K20 in l...    52   0.019  1
(FH657529) CHO_OF4406xe10r1.ab1 CHO_OF4 Nicotiana tabacum ge...    52   0.019  1
(CU915782) Zebrafish DNA sequence from clone CH73-304D9 in l...    40   0.027  3
(CU424476) RP43-78K7, complete sequence.                           44   0.028  5
(ED764844) GM_WBb0137E05.f GM_WBb Glycine max genomic clone ...    48   0.030  2
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    34   0.040  6
(AM488267) Vitis vinifera contig VV78X045322.9, whole genome...    50   0.045  2
(AF538053) Monosiga brevicollis mitochondrion, complete genome.    40   0.053  3
(AM483865) Vitis vinifera contig VV78X007042.5, whole genome...    38   0.056  2
(AM485583) Vitis vinifera contig VV78X132120.5, whole genome...    40   0.074  3
(CU104743) Zebrafish DNA sequence from clone CH73-310I18 in ...    50   0.075  1
(BX119926) Zebrafish DNA sequence from clone CH211-42C8 in l...    50   0.075  1
(AL929566) Zebrafish DNA sequence from clone CH211-159C13 in...    50   0.075  1
(AM482124) Vitis vinifera contig VV78X138127.7, whole genome...    50   0.075  1
(GC697868) Sequence 13113 from patent US 6812339.                  50   0.075  1
(AL354669) Human DNA sequence from clone RP11-201P13 on chro...    50   0.075  1
(CT027739) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    50   0.075  1
(FI058017) CHO_OF6615xi20r1.ab1 CHO_OF6 Nicotiana tabacum ge...    50   0.075  1
(FI016412) CHO_OF6920xi21r1.ab1 CHO_OF6 Nicotiana tabacum ge...    50   0.075  1
(FI014177) CHO_OF6916xk13r1.ab1 CHO_OF6 Nicotiana tabacum ge...    50   0.075  1
(FH962264) CHO_OF6775xd02r1.ab1 CHO_OF6 Nicotiana tabacum ge...    50   0.075  1
(FH877579) OSB_523005xd06r1.ab1 OSB_523 Nicotiana tabacum ge...    50   0.075  1
(FH877385) OSB_523005xm24r1.ab1 OSB_523 Nicotiana tabacum ge...    50   0.075  1
(FH877111) OSB_523003xf12f1.ab1 OSB_523 Nicotiana tabacum ge...    50   0.075  1
(FH876915) OSB_523003xc22r1.ab1 OSB_523 Nicotiana tabacum ge...    50   0.075  1
(FH875911) OSB_523002xk14r1.ab1 OSB_523 Nicotiana tabacum ge...    50   0.075  1
(FH718732) CHO_OF5001xm21f1.ab1 CHO_OF5 Nicotiana tabacum ge...    50   0.075  1
(FH606357) CHO_OF4492xb21r1.ab1 CHO_OF4 Nicotiana tabacum ge...    50   0.075  1
(FH485038) CHO_OF4549xk03f1.ab1 CHO_OF4 Nicotiana tabacum ge...    50   0.075  1
(FH388565) CHO_OF4768xf15f1.ab1 CHO_OF4 Nicotiana tabacum ge...    50   0.075  1
(FH348698) CHO_OF4652xo22r1.ab1 CHO_OF4 Nicotiana tabacum ge...    50   0.075  1
(FH348624) CHO_OF4652xo22f1.ab1 CHO_OF4 Nicotiana tabacum ge...    50   0.075  1
(FH300834) CHO_OF4259xj11f1.ab1 CHO_OF4 Nicotiana tabacum ge...    50   0.075  1
(FH292145) CHO_OF4214xg04r1.ab1 CHO_OF4 Nicotiana tabacum ge...    50   0.075  1
(FH136343) CHO_OF3670xk19f1.ab1 CHO_OF3 Nicotiana tabacum ge...    50   0.075  1
(FH114467) CHO_OF3187xc16f1.ab1 CHO_OF3 Nicotiana tabacum ge...    50   0.075  1
(FH083411) CHO_OF3027xa06f1.ab1 CHO_OF3 Nicotiana tabacum ge...    50   0.075  1
(ET935625) CHO_OF465xo12r1.ab1 CHO_OF Nicotiana tabacum geno...    50   0.075  1
(ET929084) CHO_OF464xb11f4.ab1 CHO_OF Nicotiana tabacum geno...    50   0.075  1
(ET929015) CHO_OF464xb11f3.ab1 CHO_OF Nicotiana tabacum geno...    50   0.075  1
(ET928991) CHO_OF464xb11f1.ab1 CHO_OF Nicotiana tabacum geno...    50   0.075  1
(ET818128) CHO_OF725xk24r1.ab1 CHO_OF Nicotiana tabacum geno...    50   0.075  1
(ET043271) CHO_OF3083xh01f1.ab1 CHO_OF3 Nicotiana tabacum ge...    50   0.075  1
(ET043185) CHO_OF3037xm07r1.ab1 CHO_OF3 Nicotiana tabacum ge...    50   0.075  1
(AC222493) Bos taurus clone CH240-419J19, WORKING DRAFT SEQU...    46   0.085  2
(AX458543) Sequence 89 from Patent WO0246454.                      44   0.15   4
(AX344565) Sequence 16 from Patent WO0200932.                      34   0.15   7
(BX530024) Zebrafish DNA sequence from clone RP71-39B20 in l...    38   0.16   3
(EA701390) Sequence 80269 from patent US 7365185.                  40   0.17   2
(EJ714593) 1092957872231 Global-Ocean-Sampling_GS-30-02-01-1...    36   0.18   3
(EK186859) 1095460001481 Global-Ocean-Sampling_GS-31-01-01-1...    38   0.22   2
(ET864319) CHO_OF188xc03r1.ab1 CHO_OF Nicotiana tabacum geno...    36   0.22   2
(EK229335) 1095460172922 Global-Ocean-Sampling_GS-31-01-01-1...    38   0.22   2
(AM438876) Vitis vinifera, whole genome shotgun sequence, co...    48   0.30   1
(AC215428) Solanum lycopersicum chromosome 2 clone C02HBa022...    48   0.30   1
(AC189271) Brassica rapa subsp. pekinensis clone KBrB023L08,...    48   0.30   1
(DJ357709) METHODS AND NUCLEIC ACIDS FOR THE ANALYSIS OF GEN...    48   0.30   1
(DJ357591) METHODS AND NUCLEIC ACIDS FOR THE ANALYSIS OF GEN...    48   0.30   1
(CS113428) Sequence 186 from Patent WO2005054517.                  48   0.30   1
(CS113310) Sequence 68 from Patent WO2005054517.                   48   0.30   1
(AP010033) Lotus japonicus genomic DNA, clone: LjT34K24, TM0...    48   0.30   1
(AC216435) Oryza punctata clone OP__Ba0075M03, *** SEQUENCIN...    48   0.30   1
(AC216433) Oryza punctata clone OP__Ba0072N08, *** SEQUENCIN...    48   0.30   1
(AC189273) Brassica rapa subsp. pekinensis clone KBrB023N08,...    48   0.30   1
(FH991015) CHO_OF6849xk05f1.ab1 CHO_OF6 Nicotiana tabacum ge...    48   0.30   1
(FH646844) CHO_OF4987xd06f1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   0.30   1
(FH591943) CHO_OF4660xn20r1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   0.30   1
(FH591862) CHO_OF4660xn20f1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   0.30   1
(FH570753) CHO_OF4687xd14f1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   0.30   1
(FH550789) CHO_OF4501xi01r1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   0.30   1
(FH484631) CHO_OF4786xd02r1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   0.30   1
(FH414108) CHO_OF4870xd06f1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   0.30   1
(FH396214) CHO_OF4804xf21r1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   0.30   1
(FH320412) CHO_OF4533xi08f1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   0.30   1
(FH234413) CHO_OF3422xc15r1.ab1 CHO_OF3 Nicotiana tabacum ge...    48   0.30   1
(FH082485) CHO_OF3713xb06r1.ab1 CHO_OF3 Nicotiana tabacum ge...    48   0.30   1
(FG297692) 1108793291469 New World Screwworm Larvae 9387 EST...    48   0.30   1
(FC818668) Sr_pAMT7_012j18_T7 S. ratti mixed stage pAMP Stro...    48   0.30   1
(FC818190) Sr_pAMT7_011d07_T7 S. ratti mixed stage pAMP Stro...    48   0.30   1
(FC812957) Sr_pASP6_012j18_SP6 S. ratti mixed stage pAMP Str...    48   0.30   1
(ER555061) 1093016305953 Global-Ocean-Sampling_GS-35-01-01-1...    44   0.33   2
(AC192154) Pan troglodytes BAC clone CH251-509L19 from chrom...    44   0.36   4
(AM482269) Vitis vinifera contig VV78X113600.6, whole genome...    40   0.40   3
(AC013483) Arabidopsis thaliana chromosome III BAC F17A17 ge...    44   0.41   3
(AM449510) Vitis vinifera contig VV78X202294.3, whole genome...    34   0.42   4
(AM605933) Entamoeba invadens IP1 GSS, clone inv056f11.q1k.        44   0.43   2
(AM607253) Entamoeba invadens IP1 GSS, clone inv075f06.p1k.        44   0.45   2
(CR354444) Zebrafish DNA sequence from clone DKEY-158N23 in ...    36   0.47   7
(BX548036) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   0.61   2
(BX255930) Zebrafish DNA sequence from clone DKEY-101K6 in l...    36   0.64   2
(AC174563) Bos taurus clone CH240-378L21, WORKING DRAFT SEQU...    36   0.64   2
(AC189334) Brassica rapa subsp. pekinensis clone KBrB038O16,...    32   0.65   2
(CU207243) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    36   0.68   5
(U11682) Trypanoplasma borelli mitochondrion cytochrome oxid...    40   0.74   2
(AC183495) Brassica oleracea Contig A, complete sequence.          44   0.75   3
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    34   0.81   6
(EE562315) BNZB_UP_081_C04_03JUN2004_028 Brassica napus BNZB...    42   0.83   2
(EK044302) 1092959540798 Global-Ocean-Sampling_GS-31-01-01-1...    32   0.83   2
(BX324186) Zebrafish DNA sequence from clone DKEY-18B8 in li...    40   0.83   7
(DN196797) USDA-FP_133511 5th Instar Glassy-winged Sharpshoo...    32   0.85   2
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI...    36   0.86   6
(DE614582) Bombyx mori genomic DNA, Fosmid clone:GBMFno351_d...    34   0.88   2
(CK515398) rswjb0_002677.y1 swj Bombyx mori cDNA, mRNA seque...    36   1.0    3
(CS468866) Sequence 57 from Patent EP1748080.                      44   1.0    2
(CS468865) Sequence 56 from Patent EP1748080.                      44   1.0    2
(CS419343) Sequence 57 from Patent WO2006094836.                   44   1.0    2
(CS419342) Sequence 56 from Patent WO2006094836.                   44   1.0    2
(AE001411) Plasmodium falciparum 3D7 chromosome 2 section 48...    40   1.0    3
(FB571325) Sequence 192 from Patent EP1865317.                     40   1.0    5
(CU770311) A BAC library has been constructed from PN40024 g...    42   1.1    2
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   1.1    5
(AC231973) Solanum tuberosum chromosome 6 clone RHPOTKEY143A...    44   1.1    4
(CU104745) Zebrafish DNA sequence from clone CH1073-186E1 in...    46   1.2    1
(AP007293) Lotus japonicus genomic DNA, chromosome 1, clone:...    46   1.2    1
(AM461604) Vitis vinifera contig VV78X240689.9, whole genome...    46   1.2    1
(AM435954) Vitis vinifera contig VV78X026674.9, whole genome...    46   1.2    1
(EF041519) Panorpa japonica isolate 25jap 16S ribosomal RNA ...    46   1.2    1
(AF180067) Panorpa japonica 16S ribosomal RNA gene, partial ...    46   1.2    1
(U91321) Human Chromosome 16 BAC clone CIT987SK-A-363E6, com...    46   1.2    1
(AC130456) Homo sapiens chromosome 16 clone CTA-363E6, compl...    46   1.2    1
(CU861574) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.2    1
(CU638666) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.2    1
(CU469058) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.2    1
(AC233442) Solanum tuberosum chromosome 1 clone RH084F05, **...    46   1.2    1
(AC232692) Solanum tuberosum chromosome 6 clone RHPOTKEY048G...    46   1.2    1
(AC229875) Zea mays chromosome 7 clone CH201-216G21; ZMMBBc0...    46   1.2    1
(AC221574) Bos taurus clone CH240-392I13, WORKING DRAFT SEQU...    46   1.2    1
(AC217258) Zea mays chromosome 1 clone ZMMBBb-314N9; ZMMBBb0...    46   1.2    1
(AC204825) Zea mays chromosome 1 clone ZMMBBb-630E24; ZMMBBb...    46   1.2    1
(AC187053) Zea mays chromosome 7 clone ZMMBBb-338J23; ZMMBBb...    46   1.2    1
(AC173031) Bos taurus clone CH240-270E11, WORKING DRAFT SEQU...    46   1.2    1
(BH505779) BOGWF08TR BOGW Brassica oleracea genomic clone BO...    46   1.2    1
(FH255379) CHO_OF3009xg03r1.ab1 CHO_OF3 Nicotiana tabacum ge...    46   1.2    1
(FH132265) CHO_OF3497xh24r1.ab1 CHO_OF3 Nicotiana tabacum ge...    46   1.2    1
(FH074579) CHO_OF3030xl04f1.ab1 CHO_OF3 Nicotiana tabacum ge...    46   1.2    1
(ET936233) CHO_OF434xo03r1.ab1 CHO_OF Nicotiana tabacum geno...    46   1.2    1
(ET818590) CHO_OF729xm21r1.ab1 CHO_OF Nicotiana tabacum geno...    46   1.2    1
(ET083509) QM0AAC5AG01RM1 CCH3 Citrus clementina genomic clo...    46   1.2    1
(EK214644) 1095460113484 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.2    1
(EJ544857) 1092956076303 Global-Ocean-Sampling_GS-29-01-01-1...    46   1.2    1
(DU620426) OO__Ba0124J08.f OO__Ba Oryza officinalis genomic ...    46   1.2    1
(CZ441084) OA_BBa0125N19.f OA_BBa Oryza alta genomic clone O...    46   1.2    1
(CU787258) A BAC library has been constructed from PN40024 g...    46   1.2    1
(CR793700) GR0AAA10CH08RM1 INRA BAC Bos taurus genomic clone...    46   1.2    1
(CL024432) CH216-19I24_Sp6.1 CH216 Xenopus (Silurana) tropic...    46   1.2    1
(CC678245) OGVFK09TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    46   1.2    1
(BZ797336) PUFDW75TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    46   1.2    1
(BZ797334) PUFDW75TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    46   1.2    1
(BH925080) odh03b01.b1 B.oleracea002 Brassica oleracea genom...    46   1.2    1
(BH742673) gu78f08.g1 BoBuds01 Brassica oleracea genomic clo...    46   1.2    1
(EE146066) SiJWH05CAS2 Lausanne fire ant library Solenopsis ...    46   1.2    1
(CA118980) SCBGLR1116C08.g LR1 Saccharum officinarum cDNA cl...    46   1.2    1
(AC162935) Mus musculus chromosome 8 clone RP23-125L10, WORK...    38   1.2    4
(AE017244) Mycoplasma hyopneumoniae 7448, complete genome.         34   1.3    10
(EF118753) Cairina moschata hypoxanthine-guanine phosphoribo...    40   1.3    3
(CS675674) Sequence 3 from Patent WO2007077256.                    40   1.3    3
(CP000979) Borrelia duttonii Ly plasmid pl165, complete sequ...    34   1.3    6
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9...    38   1.4    5
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4...    40   1.4    5
(AM466432) Vitis vinifera contig VV78X030347.25, whole genom...    42   1.4    2
(AC151403) Dasypus novemcinctus clone VMRC5-363O24, WORKING ...    40   1.4    3
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    36   1.5    5
(BH519256) BOHEE35TF BOHE Brassica oleracea genomic clone BO...    38   1.6    2
(CG815458) SOYDJ93TH LargeInsertSoybeanGenLib Glycine max ge...    38   1.6    2
(DX173250) OR_ABa0032H07.r OR_ABa Oryza ridleyi genomic clon...    40   1.6    2
(DE978923) Macropus eugenii DNA, BAC clone: MEB1-186O22_F, 5...    42   1.7    2
(DY681933) TTEAB13THB Tetrahymena thermophila EST library, c...    32   1.7    3
(EJ076064) 1095458122672 Global-Ocean-Sampling_GS-26-01-01-1...    36   1.8    2
(CL854530) OR_CBa0084B02.r OR_CBa Oryza rufipogon genomic cl...    40   1.8    2
(AL162272) Human DNA sequence from clone RP11-145E8 on chrom...    38   1.8    4
(DU948169) 409533 Tomato EcoRI BAC Library Solanum lycopersi...    32   1.8    3
(CZ544349) SRAA-aad55d05.g1 Strongyloides ratti whole genome...    42   1.8    2
(EJ005553) 1091138276322 Global-Ocean-Sampling_GS-26-01-01-1...    40   1.9    2
(CL835636) OR_CBa0059H07.f OR_CBa Oryza rufipogon genomic cl...    40   2.0    2
(AC010659) Drosophila melanogaster 3L BAC RP98-13C22 (Roswel...    36   2.0    4
(EK495678) 1095505156568 Global-Ocean-Sampling_GS-32-01-01-1...    42   2.0    2
(EK015528) 1092955229631 Global-Ocean-Sampling_GS-31-01-01-1...    36   2.0    3
(AC106711) Homo sapiens chromosome 3 clone RP11-670N17, *** ...    42   2.1    3
(AC179774) Strongylocentrotus purpuratus clone R3-1016F09, W...    40   2.1    4
(AC159585) Dasypus novemcinctus clone VMRC5-245E14, WORKING ...    40   2.1    3
(AL772300) Zebrafish DNA sequence from clone CH211-165G14.         40   2.2    3
(AC171055) Bos taurus clone CH240-228F5, WORKING DRAFT SEQUE...    36   2.2    4
(AC170710) Atelerix albiventris clone LB4-23B2, WORKING DRAF...    34   2.2    4
(CU571260) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   2.2    5
(GC701236) Sequence 16481 from patent US 6812339.                  40   2.3    2
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ...    36   2.3    6
(CT554371) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    32   2.3    2
(AC111588) Rattus norvegicus clone CH230-99G3, *** SEQUENCIN...    34   2.3    2
(AC103222) Rattus norvegicus clone CH230-50K4, WORKING DRAFT...    34   2.3    2
(AC187923) Muntiacus reevesi clone CH245-182J1, WORKING DRAF...    34   2.3    2
(AF165818) Guillardia theta nucleomorph chromosome 1, comple...    34   2.3    2
(AC129123) Rattus norvegicus clone CH230-331K20, WORKING DRA...    34   2.3    2
(AC171264) Atelerix albiventris clone LB4-258H15, WORKING DR...    34   2.3    2
(CR513783) Zebrafish DNA sequence from clone DKEY-246P3 in l...    32   2.3    2
(AL840627) Zebrafish DNA sequence from clone CH211-278B16 in...    32   2.3    2
(AC137081) Medicago truncatula clone mth2-10j6, complete seq...    32   2.4    2
(CU927997) S.lycopersicum DNA sequence from clone LE_HBa-64G...    34   2.4    2
(AC175028) Medicago truncatula clone mth2-7e22, complete seq...    32   2.4    2
(CU855685) Zebrafish DNA sequence from clone CH211-172E9 in ...    32   2.4    2
(BX936334) Zebrafish DNA sequence from clone DKEY-117L19 in ...    36   2.4    4
(AC193480) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    32   2.4    2
(AM465736) Vitis vinifera contig VV78X135785.10, whole genom...    40   2.5    2
(AC208094) Populus trichocarpa clone JGIACSB09-L10, complete...    34   2.5    2
(AM482610) Vitis vinifera contig VV78X053631.9, whole genome...    34   2.6    2
(AP010485) Lotus japonicus genomic DNA, chromosome 3, clone:...    36   2.6    4
(CU694474) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   2.8    6
(AX344964) Sequence 35 from Patent WO0200928.                      40   2.8    3
(ED805660) MG__Bb0091O14f MG__Bb Mimulus guttatus genomic, g...    38   2.8    2
(BX901929) Zebrafish DNA sequence from clone DKEY-11K24 in l...    42   2.9    4
(CR875443) Sus scrofa BES.                                         30   2.9    3
(CR933400) Paramecium tetraurelia, Small GTPase rab, putativ...    32   2.9    2
(AM447160) Vitis vinifera contig VV78X094610.5, whole genome...    38   3.0    2
(AC011809) Arabidopsis thaliana chromosome I BAC F6A14 genom...    44   3.0    2
(AC184376) Strongylocentrotus purpuratus clone R3-1017G11, W...    40   3.1    3
(FF572758) TTECG81THB Tetrahymena thermophila conjugation cD...    34   3.1    2
(EJ463321) 1093041180643 Global-Ocean-Sampling_GS-28-01-01-1...    32   3.1    2
(FI198726) CccaBa031-K14TR CccABa Cajanus cajan genomic clon...    34   3.1    2
(FH211462) CHO_OF3232xe14r1.ab1 CHO_OF3 Nicotiana tabacum ge...    32   3.1    2
(ED096272) AUAC-aak68g07.b1 Ascaris suum whole genome shotgu...    32   3.1    2
(EG367350) USDA-FP_168274 Homalodisca vitripennis (syn. H. c...    32   3.1    2
(ED035835) AUAC-aaj83e11.g1 Ascaris suum whole genome shotgu...    32   3.1    2
(FI259820) CccaBb056-F5JF CccABb Cajanus cajan genomic clone...    32   3.1    2
(EI283538) GM_WBc0002F08.r GM_WBc Glycine max genomic clone ...    32   3.1    2
(CN524073) GQ015M04.T3_E01 GQ015 Populus trichocarpa x Popul...    32   3.1    2
(CX582016) TTE00023893 Amplicon Express - Conjugative Form T...    34   3.1    2
(EG366633) USDA-FP_169112 Homalodisca vitripennis (syn. H. c...    32   3.1    2
(DE162293) Bombyx mori genomic DNA, Fosmid clone:RO0307-M13_R.     34   3.1    2
(EG368284) USDA-FP_168186 Homalodisca vitripennis (syn. H. c...    32   3.1    2
(CX577939) TTE00023717 Amplicon Express - Conjugative Form T...    34   3.1    2
(EG366656) USDA-FP_169133 Homalodisca vitripennis (syn. H. c...    32   3.1    2
(CO641222) USDA-FP_109960 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(CO640948) USDA-FP_109685 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(DN196642) USDA-FP_133355 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(ED431812) AUAC-aat22g10.g1 Ascaris suum whole genome shotgu...    32   3.1    2
(DN203398) USDA-FP_139423 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(DN198787) USDA-FP_135501 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(CO641399) USDA-FP_110137 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(CO639465) USDA-FP_108202 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(DN199335) USDA-FP_136049 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(CO641355) USDA-FP_110093 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(DN197801) USDA-FP_134515 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(DN197505) USDA-FP_134219 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(DN196285) USDA-FP_132996 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(CO642803) USDA-FP_111542 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(DN197727) USDA-FP_134441 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(DN203224) USDA-FP_139249 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(DN197485) USDA-FP_134199 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(CO642135) USDA-FP_110873 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(DN196244) USDA-FP_132955 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(DN196628) USDA-FP_133341 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(CO637971) USDA-FP_106708 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(DN203267) USDA-FP_139292 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(CO641506) USDA-FP_110244 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(DN197031) USDA-FP_133745 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(EG366239) USDA-FP_167246 Homalodisca vitripennis (syn. H. c...    32   3.1    2
(DN197162) USDA-FP_133876 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(CO639770) USDA-FP_108507 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(CO639769) USDA-FP_108506 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(EG367112) USDA-FP_169544 Homalodisca vitripennis (syn. H. c...    32   3.1    2
(DN197641) USDA-FP_134355 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(DN197517) USDA-FP_134231 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(DN203277) USDA-FP_139302 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(CO640317) USDA-FP_109054 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(DN197052) USDA-FP_133766 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(DN197989) USDA-FP_134703 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(DN199345) USDA-FP_136059 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(EG366479) USDA-FP_167463 Homalodisca vitripennis (syn. H. c...    32   3.1    2
(DN196701) USDA-FP_133415 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(DN197295) USDA-FP_134009 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(DN197450) USDA-FP_134164 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(CO643690) USDA-FP_112429 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(DN199383) USDA-FP_136097 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(CO641531) USDA-FP_110269 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(DN196064) USDA-FP_132775 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(CO642434) USDA-FP_111173 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(CO640267) USDA-FP_109004 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(CO638399) USDA-FP_107136 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(DN197172) USDA-FP_133886 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(CO641695) USDA-FP_110433 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(CO640941) USDA-FP_109678 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(CO639993) USDA-FP_108730 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(CO638276) USDA-FP_107013 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(DN198704) USDA-FP_135418 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(DN203223) USDA-FP_139248 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(EG365540) USDA-FP_166735 Homalodisca vitripennis (syn. H. c...    32   3.1    2
(DU389638) 1098421205959 CHORI-243 Ovis aries genomic clone ...    32   3.1    2
(CO643864) USDA-FP_112603 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(EG367410) USDA-FP_169814 Homalodisca vitripennis (syn. H. c...    32   3.1    2
(DN197114) USDA-FP_133828 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(DN199421) USDA-FP_136135 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(DN196120) USDA-FP_132831 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(DN199405) USDA-FP_136119 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(DN199415) USDA-FP_136129 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(CO642414) USDA-FP_111153 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(CO639526) USDA-FP_108263 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(CO642683) USDA-FP_111422 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(DN196133) USDA-FP_132844 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(DN195994) USDA-FP_132705 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(DN197947) USDA-FP_134661 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(DN198163) USDA-FP_134877 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(DN203519) USDA-FP_139544 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(CO642812) USDA-FP_111551 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(DN197392) USDA-FP_134106 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(DN198521) USDA-FP_135235 5th Instar Glassy-winged Sharpshoo...    32   3.1    2
(CO638220) USDA-FP_106957 Adult Glassy-winged Sharpshooter H...    32   3.1    2
(DN197615) USDA-FP_134329 5th Instar Glassy-winged Sharpshoo...    32   3.2    2
(EG367728) USDA-FP_168377 Homalodisca vitripennis (syn. H. c...    32   3.2    2
(CO642664) USDA-FP_111403 Adult Glassy-winged Sharpshooter H...    32   3.2    2
(DN199039) USDA-FP_135753 5th Instar Glassy-winged Sharpshoo...    32   3.2    2
(EG365856) USDA-FP_166900 Homalodisca vitripennis (syn. H. c...    32   3.2    2
(CO643840) USDA-FP_112579 Adult Glassy-winged Sharpshooter H...    32   3.2    2
(CO639700) USDA-FP_108437 Adult Glassy-winged Sharpshooter H...    32   3.2    2
(DN197923) USDA-FP_134637 5th Instar Glassy-winged Sharpshoo...    32   3.2    2
(DN199049) USDA-FP_135763 5th Instar Glassy-winged Sharpshoo...    32   3.2    2
(CO638498) USDA-FP_107235 Adult Glassy-winged Sharpshooter H...    32   3.2    2
(DN197627) USDA-FP_134341 5th Instar Glassy-winged Sharpshoo...    32   3.2    2
(CO641162) USDA-FP_109900 Adult Glassy-winged Sharpshooter H...    32   3.2    2
(CO637447) USDA-FP_106184 Adult Glassy-winged Sharpshooter H...    32   3.2    2
(DN197819) USDA-FP_134533 5th Instar Glassy-winged Sharpshoo...    32   3.2    2
(CO637332) USDA-FP_106069 Adult Glassy-winged Sharpshooter H...    32   3.2    2
(DN198879) USDA-FP_135593 5th Instar Glassy-winged Sharpshoo...    32   3.2    2
(EG365443) USDA-FP_167891 Homalodisca vitripennis (syn. H. c...    32   3.2    2
(DN199381) USDA-FP_136095 5th Instar Glassy-winged Sharpshoo...    32   3.2    2
(DN198817) USDA-FP_135531 5th Instar Glassy-winged Sharpshoo...    32   3.2    2
(DN197777) USDA-FP_134491 5th Instar Glassy-winged Sharpshoo...    32   3.2    2
(DN195971) USDA-FP_132682 5th Instar Glassy-winged Sharpshoo...    32   3.2    2
(EI349551) GM_WBc0097C21.r GM_WBc Glycine max genomic clone ...    32   3.2    2
(DN198277) USDA-FP_134991 5th Instar Glassy-winged Sharpshoo...    32   3.2    2
(DN203331) USDA-FP_139356 5th Instar Glassy-winged Sharpshoo...    32   3.2    2
(DN199141) USDA-FP_135855 5th Instar Glassy-winged Sharpshoo...    32   3.2    2
(CO642286) USDA-FP_111025 Adult Glassy-winged Sharpshooter H...    32   3.2    2
(DN198288) USDA-FP_135002 5th Instar Glassy-winged Sharpshoo...    32   3.2    2
(DN199153) USDA-FP_135867 5th Instar Glassy-winged Sharpshoo...    32   3.2    2
(CO642302) USDA-FP_111041 Adult Glassy-winged Sharpshooter H...    32   3.2    2
(DN197756) USDA-FP_134470 5th Instar Glassy-winged Sharpshoo...    32   3.2    2
(DN199323) USDA-FP_136037 5th Instar Glassy-winged Sharpshoo...    32   3.2    2
(DN196023) USDA-FP_132734 5th Instar Glassy-winged Sharpshoo...    32   3.2    2
(CO639848) USDA-FP_108585 Adult Glassy-winged Sharpshooter H...    32   3.2    2
(CO639847) USDA-FP_108584 Adult Glassy-winged Sharpshooter H...    32   3.2    2
(CO640667) USDA-FP_109404 Adult Glassy-winged Sharpshooter H...    32   3.2    2
(CO643004) USDA-FP_111743 Adult Glassy-winged Sharpshooter H...    32   3.3    2
(DN197902) USDA-FP_134616 5th Instar Glassy-winged Sharpshoo...    32   3.3    2
(DN196095) USDA-FP_132806 5th Instar Glassy-winged Sharpshoo...    32   3.3    2
(DN198233) USDA-FP_134947 5th Instar Glassy-winged Sharpshoo...    32   3.3    2
(EG365849) USDA-FP_166894 Homalodisca vitripennis (syn. H. c...    32   3.3    2
(AC183544) Pan troglodytes BAC clone CH251-284N17 from chrom...    40   3.3    5
(AM437120) Vitis vinifera, whole genome shotgun sequence, co...    38   3.3    2
(DN197380) USDA-FP_134094 5th Instar Glassy-winged Sharpshoo...    32   3.3    2
(AB301597) Cerataphis jamuritsu mitochondrial genes for smal...    42   3.4    2
(DN196736) USDA-FP_133450 5th Instar Glassy-winged Sharpshoo...    32   3.4    2
(BD460337) Diagnosis of Diseases Associated with Cell Cycle.       38   3.4    2
(BD452259) Diagnosis of Diseases Associated with Cell Cycle.       38   3.4    2
(AX348652) Sequence 110 from Patent WO0202807.                     38   3.4    2
(AX344261) Sequence 108 from Patent WO0200926.                     38   3.4    2
(AX251873) Sequence 134 from Patent WO0168911.                     38   3.4    2
(BX784026) Zebrafish DNA sequence from clone CH211-66P13 in ...    34   3.4    5
(CR407544) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    38   3.5    4
(AC006951) Arabidopsis thaliana chromosome 2 clone T1O3 map ...    40   3.5    3
(CT025647) Zebrafish DNA sequence from clone CH211-173P13 in...    42   3.5    5
(BX284622) Zebrafish DNA sequence from clone DKEY-174P10 in ...    36   3.6    4
(AM452450) Vitis vinifera contig VV78X212873.6, whole genome...    38   3.6    2
(FB571381) Sequence 248 from Patent EP1865317.                     36   3.6    6
(AF193811) Dictyostelium discoideum Rh-like glycoprotein Rhg...    34   3.8    2
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    38   3.8    9
(AM425232) Vitis vinifera contig VV78X124301.2, whole genome...    38   3.8    2
(AX344572) Sequence 23 from Patent WO0200932.                      40   3.9    5
(AE017243) Mycoplasma hyopneumoniae J, complete genome.            34   3.9    11
(AX346873) Sequence 1944 from Patent WO0200928.                    44   3.9    2
(AC003667) Homo sapiens X PAC RP1-17L20 (Roswell Park Cancer...    40   3.9    2
(EF081026) Triticum turgidum subsp. durum clone BAC 221H19 g...    44   3.9    2
(DD061484) Methods and nucleic acids for the analysis of  he...    42   4.0    2
(DD061338) Methods and nucleic acids for the analysis of  he...    42   4.0    2
(AX599046) Sequence 386 from Patent WO02077272.                    42   4.0    2
(AX598900) Sequence 240 from Patent WO02077272.                    42   4.0    2
(EI467559) PV_GBa0073P04.f PV_GBa Phaseolus vulgaris genomic...    30   4.0    3
(BM900220) rc16b11.y1 Meloidogyne hapla egg pAMP1 v1 Meloido...    34   4.0    2
(AC108223) Oryza sativa Japonica Group chromosome 11 clone O...    40   4.3    5
(EJ646595) 1092342070379 Global-Ocean-Sampling_GS-30-02-01-1...    34   4.4    2
(BM900278) rc16g12.y1 Meloidogyne hapla egg pAMP1 v1 Meloido...    34   4.5    2
(AF510714) Dictyostelium discoideum Rh-like glycoprotein gen...    34   4.5    2
(CU855537) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   4.5    4
(CE221766) tigr-gss-dog-17000326895982 Dog Library Canis lup...    38   4.6    2
(AL355580) Human DNA sequence from clone RP11-76K10 on chrom...    34   4.7    5
(CR384395) Arabidopsis thaliana transposon insertion STS GT_...    44   4.7    1
(BX539328) Mouse DNA sequence from clone RP23-108I21 on chro...    44   4.7    1
(AC157900) Mus musculus chromosome 18, clone RP23-10A11, com...    44   4.7    1
(AC154184) Mus musculus BAC clone RP24-67K24 from 13, comple...    44   4.7    1
(AC150746) Mus musculus BAC clone RP23-364B18 from 6, comple...    44   4.7    1
(AC147053) Mus musculus BAC clone RP23-87B16 from 6, complet...    44   4.7    1
(AC127286) Mus musculus BAC clone RP23-340I4 from chromosome...    44   4.7    1
(AC123935) Mus musculus BAC clone RP23-354J3 from chromosome...    44   4.7    1
(AC198665) Pan troglodytes BAC clone CH251-646A4 from chromo...    44   4.7    1
(AC183669) Pan troglodytes BAC clone CH251-549L23 from chrom...    44   4.7    1
(AC148188) Saimiri boliviensis boliviensis clone CH254-64N20...    44   4.7    1
(CP000881) Hemiselmis andersenii chromosome 1, complete sequ...    44   4.7    1
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN...    44   4.7    1
(AP003259) Oryza sativa Japonica Group genomic DNA, chromoso...    44   4.7    1
(AM481377) Vitis vinifera contig VV78X024551.8, whole genome...    44   4.7    1
(AM454360) Vitis vinifera, whole genome shotgun sequence, co...    44   4.7    1
(AM438795) Vitis vinifera contig VV78X133853.2, whole genome...    44   4.7    1
(AC215625) Populus trichocarpa clone POP011-A24, complete se...    44   4.7    1
(AC074395) Arabidopsis thaliana chromosome 3 BAC T8G24 genom...    44   4.7    1
(EA680409) Sequence 59288 from patent US 7365185.                  44   4.7    1
(AX656745) Sequence 6615 from Patent WO03000898.                   44   4.7    1
(AX344224) Sequence 71 from Patent WO0200926.                      44   4.7    1
(CT797454) Pig DNA sequence from clone CH242-173D7 on chromo...    44   4.7    1
(AC234619) Felis catus BAC clone FCAB-55H12 from chromosome ...    44   4.7    1
(AP009031) Bombyx mori genomic DNA, chromosome 2, BAC clone:...    44   4.7    1
(AF180054) Panorpa helena 16S ribosomal RNA gene, partial se...    44   4.7    1
(AF180046) Panorpa alpina 16S ribosomal RNA gene, partial se...    44   4.7    1
(AC115594) Dictyostelium discoideum chromosome 2 map 4071862...    44   4.7    1
(AB371634) Tuberaphis leeuweni mitochondrial genes for small...    44   4.7    1
(AL035407) Human DNA sequence from clone RP3-419C19 on chrom...    44   4.7    1
(AC159075) Bos taurus clone CH240-43I16, WORKING DRAFT SEQUE...    44   4.7    1
(AC150448) Pan troglodytes clone CH251-35E6, WORKING DRAFT S...    44   4.7    1
(FP102230) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.7    1
(CU929708) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.7    1
(CU633435) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.7    1
(AL359635) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   4.7    1
(AC219353) Bos taurus clone CH240-338D19, WORKING DRAFT SEQU...    44   4.7    1
(AC219350) Bos taurus clone CH240-338C14, WORKING DRAFT SEQU...    44   4.7    1
(AC200911) Pan troglodytes chromosome X clone CH251-595H10, ...    44   4.7    1
(AC198249) Myotis lucifugus clone CH235-477B19, WORKING DRAF...    44   4.7    1
(AC183906) Zea mays chromosome 5 clone ZMMBBb-500E13; ZMMBBb...    44   4.7    1
(AC171869) Bos taurus clone CH240-64A9, WORKING DRAFT SEQUEN...    44   4.7    1
(AC165469) Bos taurus clone CH240-171C5, *** SEQUENCING IN P...    44   4.7    1
(AC164513) Loxodonta africana clone VMRC15-554C21, WORKING D...    44   4.7    1
(AC164452) Bos taurus clone CH240-153O9, *** SEQUENCING IN P...    44   4.7    1
(AZ263610) RPCI-23-115M16.TV RPCI-23 Mus musculus genomic cl...    44   4.7    1
(AY203367) AY203367 Arabidopsis thaliana Landsberg DNA Arabi...    44   4.7    1
(FI299882) AdH1032-CPY2-A7TF AdH1 Arachis duranensis genomic...    44   4.7    1
(FI008456) CHO_OF6902xd03r1.ab1 CHO_OF6 Nicotiana tabacum ge...    44   4.7    1
(ET887250) CHO_OF433xn18f1.ab1 CHO_OF Nicotiana tabacum geno...    44   4.7    1
(ET759709) CHO_OF076xh08r1.ab1 CHO_OF Nicotiana tabacum geno...    44   4.7    1
(ET327242) S0282J08_T7 CHORI-214 Salmo salar genomic clone S...    44   4.7    1
(ER856838) PPTAW73TR Solanum tuberosum RHPOTKEY BAC ends Sol...    44   4.7    1
(ER835459) POTK820TF Solanum tuberosum RHPOTKEY BAC ends Sol...    44   4.7    1
(ER620045) 1093017390669 Global-Ocean-Sampling_GS-36-01-01-2...    44   4.7    1
(EK270945) 1095462256481 Global-Ocean-Sampling_GS-31-01-01-1...    44   4.7    1
(EK154858) 1095456070435 Global-Ocean-Sampling_GS-31-01-01-1...    44   4.7    1
(EK150580) 1095456048977 Global-Ocean-Sampling_GS-31-01-01-1...    44   4.7    1
(EK075973) 1092961035418 Global-Ocean-Sampling_GS-31-01-01-1...    44   4.7    1
(EJ847924) 1093017864405 Global-Ocean-Sampling_GS-30-02-01-1...    44   4.7    1
(EJ819480) 1093017531109 Global-Ocean-Sampling_GS-30-02-01-1...    44   4.7    1
(EJ818874) 1093017528613 Global-Ocean-Sampling_GS-30-02-01-1...    44   4.7    1
(EJ804179) 1093017447489 Global-Ocean-Sampling_GS-30-02-01-1...    44   4.7    1
(EJ789805) 1093017371427 Global-Ocean-Sampling_GS-30-02-01-1...    44   4.7    1
(AM620501) Entamoeba invadens IP1 GSS, clone inv129g01.p1k.        44   4.7    1
(EJ514310) 1092344163804 Global-Ocean-Sampling_GS-29-01-01-1...    44   4.7    1
(EJ513959) 1092343586486 Global-Ocean-Sampling_GS-29-01-01-1...    44   4.7    1
(EJ485318) 1095403496098 Global-Ocean-Sampling_GS-28-01-01-1...    44   4.7    1
(EJ411004) 1093012142193 Global-Ocean-Sampling_GS-28-01-01-1...    44   4.7    1
(EJ389925) 1092963905927 Global-Ocean-Sampling_GS-28-01-01-1...    44   4.7    1
(EJ345050) 1092963541237 Global-Ocean-Sampling_GS-28-01-01-1...    44   4.7    1
(EJ240989) 1095328055825 Global-Ocean-Sampling_GS-27-01-01-1...    44   4.7    1
(EJ199599) 1092344289230 Global-Ocean-Sampling_GS-27-01-01-1...    44   4.7    1
(EJ099998) 1095467011107 Global-Ocean-Sampling_GS-26-01-01-1...    44   4.7    1
(EJ098486) 1095462319424 Global-Ocean-Sampling_GS-26-01-01-1...    44   4.7    1
(EJ093953) 1095460240873 Global-Ocean-Sampling_GS-26-01-01-1...    44   4.7    1
(EJ089109) 1095460147396 Global-Ocean-Sampling_GS-26-01-01-1...    44   4.7    1
(EJ073068) 1095458101137 Global-Ocean-Sampling_GS-26-01-01-1...    44   4.7    1
(EJ061922) 1095458001903 Global-Ocean-Sampling_GS-26-01-01-1...    44   4.7    1
(EJ061373) 1095456068292 Global-Ocean-Sampling_GS-26-01-01-1...    44   4.7    1
(EJ051002) 1095454147191 Global-Ocean-Sampling_GS-26-01-01-1...    44   4.7    1
(EJ029338) 1095454039117 Global-Ocean-Sampling_GS-26-01-01-1...    44   4.7    1
(EJ022100) 1095448007876 Global-Ocean-Sampling_GS-26-01-01-1...    44   4.7    1
(EJ021909) 1095448006870 Global-Ocean-Sampling_GS-26-01-01-1...    44   4.7    1
(EI702034) GT21295.Ds5.09.01.2006.jz08.771 Arabidopsis thali...    44   4.7    1
(EI518537) MUGQ_CH252P239O19T7_CN434_066 CHORI-252 Vervet Mo...    44   4.7    1
(EI518493) MUGQ_CH252P239M17T7_CN434_067 CHORI-252 Vervet Mo...    44   4.7    1
(EI420046) PV_GBa0007P14.r PV_GBa Phaseolus vulgaris genomic...    44   4.7    1
(DX433802) BE1076_M14_R IASMA L1 HindIII BAC library Vitis v...    44   4.7    1
(AJ856666) Brassica rapa subsp. pekinensis GSS, clone KBrH05...    44   4.7    1
(DH175833) Oryzias latipes Fosmid clone:GOLWFno453_h21, forw...    44   4.7    1
(DH118222) Oryzias latipes Fosmid clone:GOLWFno380_m23, reve...    44   4.7    1
(DE579877) Bombyx mori genomic DNA, Fosmid clone:GBMFno229_a...    44   4.7    1
(DE555122) Bombyx mori genomic DNA, Fosmid clone:GBMFno192_o...    44   4.7    1
(DE483620) Bombyx mori genomic DNA, Fosmid clone:GBMFno88_h2...    44   4.7    1
(DE478899) Bombyx mori genomic DNA, Fosmid clone:GBMFno82_a2...    44   4.7    1
(DE379541) Bombyx mori genomic DNA, BAC clone:1J3G.                44   4.7    1
(DE352311) Bombyx mori genomic DNA, BAC clone:BET_069_P16.         44   4.7    1
(DE352248) Bombyx mori genomic DNA, BAC clone:BET_069_M15.         44   4.7    1
(DE351064) Bombyx mori genomic DNA, BAC clone:BET_066_C15.         44   4.7    1
(DE349607) Bombyx mori genomic DNA, BAC clone:BET_061_K23.         44   4.7    1
(DE347642) Bombyx mori genomic DNA, BAC clone:BET_055_G04.         44   4.7    1
(DE342281) Bombyx mori genomic DNA, BAC clone:BET_039_J09.         44   4.7    1
(DE288962) Bombyx mori genomic DNA, BAC clone:BES_018_L06.         44   4.7    1
(DE288937) Bombyx mori genomic DNA, BAC clone:BES_018_J07.         44   4.7    1
(CZ834215) OC__Ba0217A04.r OC__Ba Oryza coarctata genomic cl...    44   4.7    1
(CZ796372) OC__Ba0165J04.r OC__Ba Oryza coarctata genomic cl...    44   4.7    1
(CZ755975) OC__Ba0107K04.r OC__Ba Oryza coarctata genomic cl...    44   4.7    1
(CZ727981) OC__Ba0055M12.f OC__Ba Oryza coarctata genomic cl...    44   4.7    1

>(AU072284) Dictyostelium discoideum slug cDNA, clone SSE103.
          Length = 240

 Score =  416 bits (210), Expect = e-112
 Identities = 210/210 (100%)
 Strand = Plus / Plus


Query: 1   catttttcaaatatttatctaaatatttttataaataaattattaaatgacaattatcga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   catttttcaaatatttatctaaatatttttataaataaattattaaatgacaattatcga 60


Query: 61  ttctttttctgcaatcgttacaattaaaaataataaaacattccaaaatttaaacaattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttctttttctgcaatcgttacaattaaaaataataaaacattccaaaatttaaacaattt 120


Query: 121 taatagttcattagtatatgaaaaatcaatgataacgagatgggatccaagaaaaactgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taatagttcattagtatatgaaaaatcaatgataacgagatgggatccaagaaaaactgt 180


Query: 181 aattaaaaaaggattttatgttggccctgc 210
           ||||||||||||||||||||||||||||||
Sbjct: 181 aattaaaaaaggattttatgttggccctgc 210

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 478,894,471
Number of extensions: 36147055
Number of successful extensions: 3749430
Number of sequences better than 10.0: 643
Length of query: 466
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 443
Effective length of database: 99,442,330,388
Effective search space: 44052952361884
Effective search space used: 44052952361884
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U04937-1 (Contig-U04937-1Q) /CSM_Contig/Contig-U04937-1Q.Seq.d
         (466 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF337958_8(AF337958|pid:none) Streptococcus agalactiae strain NT...    32   5.4

>AF337958_8(AF337958|pid:none) Streptococcus agalactiae strain NT6
           type VI capsular polysaccharide synthesis operon,
           complete sequence.
          Length = 385

 Score = 32.3 bits (72), Expect = 5.4
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 192 PFLITVFLGSHLVIIDFSYTNELLKLFKFWNVLLFL 85
           P  + +FLGSH   I   Y      LF F+++LLFL
Sbjct: 296 PSSVGIFLGSHSSYISIFYRTSFTGLFLFFSILLFL 331

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 343,105,056
Number of extensions: 4651164
Number of successful extensions: 12739
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12738
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 1,061,185,681
Length adjustment: 116
Effective length of query: 39
Effective length of database: 682,045,713
Effective search space: 26599782807
Effective search space used: 26599782807
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.75  gvh: 0.17  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for Contig-U04937-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0