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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04916-1
Contig ID Contig-U04916-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U04916-1 (Contig-U04916-1Q) /CSM_Contig/Contig-U04916-1Q.Seq.d
GTATAAAATGAAAAATAAAATCTATTGCAAAAAAGAAAATAAAGAATTAA
AGATGGAAAAAAAATTACCAATGGTAATTAGAAAAATAGCACCAAAGTAC
CCTGAAAAACCAATAGAGGATTTTTTAAAACAAAATGTTTTTTATTTAAA
CCATTATTATGAAAATTGTGGTGGCTTGAAGAATTATAAAGAAATAATAT
TTACTGAAGAACTACTTTCGTTAAAACAAACAGATGCAGCAAAAGTTTTG
AATATTACAACGAAATCTCTTTTAAAATTATTAAAACATGCAATCAATGA
AACAGATGGTTTATCGGAATACTACAATAATAAAAGAAAAATAATATGGC
CACGTAGAACTGTAACTTCACCATTAATGGTATATGTTTATACAAACAAA
GGTATATCTGTAAAATGTGTTTTTAAAAATGAAAATAAAATCTAGATTTT
TAAATGTGTTTAAAACTAAAACTAAAAATAAAATAAAATATTGTTTAGAA
AAAAAAAAAAAAAAAAAATCAAGGATCCTTAGAATTAATTATTTAAATAA
CCTTTTTTTGGTATTAAGTACATAACTAGAAAATAA
Gap no gap
Contig length 586
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 913309
End point 912764
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U04916
List of clone(s) 

est1=SSD778E,1,479
est2=VSB380E,33,587
Translated Amino Acid sequence 
YKMKNKIYCKKENKELKMEKKLPMVIRKIAPKYPEKPIEDFLKQNVFYLNHYYENCGGLK
NYKEIIFTEELLSLKQTDAAKVLNITTKSLLKLLKHAINETDGLSEYYNNKRKIIWPRRT
VTSPLMVYVYTNKGISVKCVFKNENKI*ifkcv*n*n*k*nkilfrkkkkkkikdp*n*l
fk*pffgikyitrk*
Translated Amino Acid sequence (All Frames) 
Frame A:
v*nek*nllqkrk*rikdgkkitngn*knstkvp*ktnrgffktkcflfkpll*klwwle
el*rnniy*rttfvktnrcsksfeyyneisfkiiktcnq*nrwfigilq**kknnmat*n
cnftingiclykqryickmcf*k*k*nldf*mclklklkik*niv*kkkkkknqgsleli
i*itffwy*vhn*ki


Frame B:
YKMKNKIYCKKENKELKMEKKLPMVIRKIAPKYPEKPIEDFLKQNVFYLNHYYENCGGLK
NYKEIIFTEELLSLKQTDAAKVLNITTKSLLKLLKHAINETDGLSEYYNNKRKIIWPRRT
VTSPLMVYVYTNKGISVKCVFKNENKI*ifkcv*n*n*k*nkilfrkkkkkkikdp*n*l
fk*pffgikyitrk*


Frame C:
ik*kiksiakkkikn*rwkknyqw*lek*hqstlknq*rif*nkmffi*tiimkivva*r
iikk*yllknyfr*nkqmqqkf*ilqrnlf*ny*nmqsmkqmvyrnttiikek*yghvel
*lhh*wymfiqtkvyl*nvflkmkiksrflnvfktktknkikyclekkkkkksrilriny
lnnlflvlst*len
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04916-1 (Contig-U04916-1Q)
/CSM_Contig/Contig-U04916-1Q.Seq.d
         (586 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04916-1 (Contig-U04916-1Q) /CSM_Contig/Conti...   704  0.0
Contig-U02225-1 (Contig-U02225-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U12249-1 (Contig-U12249-1Q) /CSM_Contig/Conti...    36  0.041
Contig-U11685-1 (Contig-U11685-1Q) /CSM_Contig/Conti...    36  0.041
Contig-U05144-1 (Contig-U05144-1Q) /CSM_Contig/Conti...    36  0.041
Contig-U05095-1 (Contig-U05095-1Q) /CSM_Contig/Conti...    36  0.041
Contig-U04536-1 (Contig-U04536-1Q) /CSM_Contig/Conti...    36  0.041
Contig-U11797-1 (Contig-U11797-1Q) /CSM_Contig/Conti...    32  0.64
Contig-U11341-1 (Contig-U11341-1Q) /CSM_Contig/Conti...    28  10.0

>Contig-U04916-1 (Contig-U04916-1Q) /CSM_Contig/Contig-U04916-1Q.Seq.d
          Length = 586

 Score =  704 bits (355), Expect = 0.0
 Identities = 355/355 (100%)
 Strand = Plus / Plus

                                                                       
Query: 65  ttaccaatggtaattagaaaaatagcaccaaagtaccctgaaaaaccaatagaggatttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  ttaccaatggtaattagaaaaatagcaccaaagtaccctgaaaaaccaatagaggatttt 124

                                                                       
Query: 125 ttaaaacaaaatgttttttatttaaaccattattatgaaaattgtggtggcttgaagaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ttaaaacaaaatgttttttatttaaaccattattatgaaaattgtggtggcttgaagaat 184

                                                                       
Query: 185 tataaagaaataatatttactgaagaactactttcgttaaaacaaacagatgcagcaaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tataaagaaataatatttactgaagaactactttcgttaaaacaaacagatgcagcaaaa 244

                                                                       
Query: 245 gttttgaatattacaacgaaatctcttttaaaattattaaaacatgcaatcaatgaaaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gttttgaatattacaacgaaatctcttttaaaattattaaaacatgcaatcaatgaaaca 304

                                                                       
Query: 305 gatggtttatcggaatactacaataataaaagaaaaataatatggccacgtagaactgta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gatggtttatcggaatactacaataataaaagaaaaataatatggccacgtagaactgta 364

                                                                  
Query: 365 acttcaccattaatggtatatgtttatacaaacaaaggtatatctgtaaaatgtg 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 acttcaccattaatggtatatgtttatacaaacaaaggtatatctgtaaaatgtg 419


 Score = 93.7 bits (47), Expect = 2e-19
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                       
Query: 519 tcaaggatccttagaattaattatttaaataaccnnnnnnnggtattaagtacataacta 578
           ||||||||||||||||||||||||||||||||||       |||||||||||||||||||
Sbjct: 519 tcaaggatccttagaattaattatttaaataacctttttttggtattaagtacataacta 578

                   
Query: 579 gaaaataa 586
           ||||||||
Sbjct: 579 gaaaataa 586


 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 479 taaaataaaatattgtttag 498
           ||||||||||||||||||||
Sbjct: 479 taaaataaaatattgtttag 498


>Contig-U02225-1 (Contig-U02225-1Q) /CSM_Contig/Contig-U02225-1Q.Seq.d
          Length = 641

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 328 taataaaagaaaaataata 346
           |||||||||||||||||||
Sbjct: 365 taataaaagaaaaataata 383


>Contig-U12249-1 (Contig-U12249-1Q) /CSM_Contig/Contig-U12249-1Q.Seq.d
          Length = 2111

 Score = 36.2 bits (18), Expect = 0.041
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 332 aaaagaaaaataatatgg 349
           ||||||||||||||||||
Sbjct: 916 aaaagaaaaataatatgg 899


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,813
Number of Sequences: 6905
Number of extensions: 13813
Number of successful extensions: 1556
Number of sequences better than 10.0: 455
length of query: 586
length of database: 5,674,871
effective HSP length: 16
effective length of query: 570
effective length of database: 5,564,391
effective search space: 3171702870
effective search space used: 3171702870
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7. 5
Homology vs DNA 
Query= Contig-U04916-1 (Contig-U04916-1Q) /CSM_Contig/Contig-U04916-1Q.Seq.d
         (586 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU261985) Dictyostelium discoideum vegetative cDNA clone:VS...   640   0.0    3
(AU037552) Dictyostelium discoideum slug cDNA, clone SSD778.      640   e-179  1
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105...   418   e-150  2
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    34   0.006  8
(BQ007497) UI-1-BC1-aiw-f-02-0-UI.s1 NCI_CGAP_Pl2 Homo sapie...    52   0.024  1
(U42844) Caenorhabditis elegans cosmid C08A9, complete seque...    36   0.080  3
(BX649615) Mouse DNA sequence from clone RP23-273I8 on chrom...    46   0.13   3
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    32   0.14   7
(AC207287) Pongo abelii BAC clone CH276-49H10 from chromosom...    38   0.14   6
(AC115203) Rattus norvegicus clone CH230-51J19, WORKING DRAF...    42   0.21   3
(ED800279) MG__Ba0078H21r MG__Ba Mimulus guttatus genomic, g...    40   0.32   2
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    36   0.34   8
(CR346725) mte1-80E8FM1 BAC end, cultivar Jemalong A17 of Me...    48   0.38   1
(EW039768) rpigcf0_007941.y1 ctl Sus scrofa cDNA 5', mRNA se...    34   0.38   2
(AE014843) Plasmodium falciparum 3D7 chromosome 11 section 8...    32   0.62   9
(CP000553) Prochlorococcus marinus str. NATL1A, complete gen...    36   0.70   2
(CP000095) Prochlorococcus marinus str. NATL2A, complete gen...    36   0.70   2
(EJ733217) 1092960198134 Global-Ocean-Sampling_GS-30-02-01-1...    40   0.73   2
(EW039583) rpigcf0_011392.y1 ctl Sus scrofa cDNA 5', mRNA se...    34   0.74   2
(CR854988) Zebrafish DNA sequence from clone DKEY-147M6 in l...    36   0.80   2
(AC182655) Populus trichocarpa clone Pop1-121O5, complete se...    32   0.84   2
(CR456682) Zebrafish DNA sequence from clone CH211-32G19 in ...    36   0.86   6
(EJ807852) 1093017470962 Global-Ocean-Sampling_GS-30-02-01-1...    34   0.91   3
(EJ811529) 1093017492178 Global-Ocean-Sampling_GS-30-02-01-1...    34   0.92   3
(AM427119) Vitis vinifera contig VV78X235323.4, whole genome...    36   0.93   2
(EJ430177) 1093015251074 Global-Ocean-Sampling_GS-28-01-01-1...    40   0.94   2
(AM470195) Vitis vinifera contig VV78X188098.7, whole genome...    36   0.97   2
(AG362724) Mus musculus molossinus DNA, clone:MSMg01-164C11....    36   0.98   2
(AC079147) Homo sapiens BAC clone RP11-101B5 from 2, complet...    44   1.0    2
(ED627608) GM_WBa0026H15.r GM_WBa Glycine max genomic clone ...    34   1.1    2
(ED659767) GM_WBa0081J06.r GM_WBa Glycine max genomic clone ...    34   1.1    2
(BH024065) Gm_ISb001_026_H15R ISU Soybean BAC Library (pBelo...    34   1.1    2
(CE612830) tigr-gss-dog-17000313550149 Dog Library Canis lup...    34   1.1    2
(CC283815) CH261-16K20_RM1.1 CH261 Gallus gallus genomic clo...    38   1.1    2
(EW639856) rthg33_m6.y1 thg Sus scrofa cDNA 5', mRNA sequence.     34   1.1    2
(BX964034) Forward strand read from insert in 5'HPRT inserti...    34   1.1    3
(AC216764) Populus trichocarpa clone POP014-L21, complete se...    38   1.2    6
(EW041442) rpigcf0_006379.y1 ctl Sus scrofa cDNA 5', mRNA se...    34   1.2    2
(AC114301) Homo sapiens chromosome 5 clone RP11-143L23, comp...    38   1.4    4
(AL831747) Zebrafish DNA sequence from clone CH211-258G4 in ...    46   1.5    1
(AC132343) Mus musculus BAC clone RP24-175J11 from chromosom...    46   1.5    1
(FJ436986) Aegilops tauschii Lr34 locus, partial sequence.         46   1.5    1
(FJ436984) Triticum aestivum cultivar Glenlea Lr34 locus, pa...    46   1.5    1
(BC070175) Homo sapiens discs, large (Drosophila) homolog-as...    46   1.5    1
(CU694558) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.5    1
(AP007917) Lotus japonicus genomic DNA, chromosome 4, clone:...    46   1.5    1
(AC217657) Zea mays chromosome 3 clone CH201-395F13; ZMMBBc0...    46   1.5    1
(AC212334) Zea mays chromosome 3 clone CH201-202F12; ZMMBBc0...    46   1.5    1
(AC207567) Zea mays chromosome 3 clone CH201-249C8; ZMMBBc02...    46   1.5    1
(AC199788) Zea mays chromosome 3 clone CH201-205B7; ZMMBBc02...    46   1.5    1
(FI002818) CHO_OF6893xa22f1.ab1 CHO_OF6 Nicotiana tabacum ge...    46   1.5    1
(EJ888974) 1093018432556 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.5    1
(EJ833720) 1093017605502 Global-Ocean-Sampling_GS-30-02-01-1...    46   1.5    1
(CT050909) Sus scrofa genomic clone PigE-220A17, genomic sur...    46   1.5    1
(CC398869) PUHBS54TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    46   1.5    1
(CC398866) PUHBS54TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    46   1.5    1
(EB655178) 26Z_JF_C08 pAPO Cenchrus ciliaris cDNA 3', mRNA s...    46   1.5    1
(CX782253) HESC3_13_E04.b1_A036 NIH_MGC_260 Homo sapiens cDN...    46   1.5    1
(BI327404) AR078D08iTHYED08S Infected Porcine Thymus cDNA li...    34   1.5    2
(BI399079) MI-P-AY1-nrk-a-11-0-UI.s1 MI-P-AY1 Sus scrofa cDN...    34   1.5    2
(AC172044) Bos taurus clone CH240-303M3, WORKING DRAFT SEQUE...    36   1.6    4
(DB769369) Apis mellifera head cDNA, RIKEN full-length enric...    40   1.7    2
(DB775901) Apis mellifera head cDNA, RIKEN full-length enric...    40   1.7    2
(AC202678) Macaca mulatta  BAC CH250-38L21 () complete seque...    36   1.7    4
(EW043747) rpigcf0_008724.y1 ctl Sus scrofa cDNA 5', mRNA se...    34   1.8    2
(EW043539) rpigfc0_017335.y1 ctl Sus scrofa cDNA 5', mRNA se...    34   1.8    2
(DB778240) Apis mellifera head cDNA, RIKEN full-length enric...    40   1.8    2
(EW466248) rnmm21c_k20.y1 nmm Sus scrofa cDNA 5', mRNA seque...    34   1.8    2
(EW044797) rpigcf0_016294.y1 ctl Sus scrofa cDNA 5', mRNA se...    34   1.9    2
(EW586073) rspl09_k13.y1 spl Sus scrofa cDNA 5', mRNA sequence.    34   1.9    2
(EW326491) rlin32_o11.y1 lin Sus scrofa cDNA 5', mRNA sequence.    34   2.0    2
(CR382364) Zebrafish DNA sequence from clone CH211-198E11 in...    40   2.0    5
(CU914172) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   2.0    2
(EW041459) rpigcf0_016286.y1 ctl Sus scrofa cDNA 5', mRNA se...    34   2.0    2
(CP001158) Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisu...    36   2.1    10
(CP001161) Buchnera aphidicola str. 5A (Acyrthosiphon pisum)...    36   2.1    10
(AC084770) Homo sapiens chromosome 4 clone RP11-1151G9 map 4...    32   2.2    4
(FD631253) susfleck_FC_N_19_F05 SUSFLECK Fat Cell Normalized...    34   2.3    2
(AC138451) Medicago truncatula clone mth2-24k1, complete seq...    36   2.4    4
(AJ960041) Sus scrofa EST, clone C0007754m09, 3' direction.        34   2.4    2
(AX346929) Sequence 2000 from Patent WO0200928.                    32   2.5    5
(AL591465) Human DNA sequence from clone RP11-129L5 on chrom...    38   2.6    4
(DB796277) Sus scrofa mRNA, clone:DCI010075H09, 5' end, expr...    34   2.7    2
(EJ162775) 1092344054639 Global-Ocean-Sampling_GS-27-01-01-1...    40   2.7    2
(EK562869) 1095521018719 Global-Ocean-Sampling_GS-32-01-01-1...    38   2.7    2
(AC125200) Mus musculus chromosome UNKNOWN clone RP23-261P9,...    38   2.8    4
(CU633665) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   2.9    2
(EK079260) 1092961087700 Global-Ocean-Sampling_GS-31-01-01-1...    32   3.0    3
(AM463358) Vitis vinifera, whole genome shotgun sequence, co...    34   3.1    2
(CW942511) TcB24.1_C02_T7 Tribolium BAC library Tribolium ca...    42   3.1    2
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    38   3.1    6
(BD428880) Method and nucleic acids for pharmacogenomic meth...    32   3.1    4
(AX348359) Sequence 54 from Patent WO0202806.                      32   3.1    4
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s...    36   3.5    7
(EK252809) 1095460287704 Global-Ocean-Sampling_GS-31-01-01-1...    32   3.5    3
(AC122580) Rattus norvegicus clone CH230-29H2, *** SEQUENCIN...    40   3.5    4
(ER452550) 1092963854727 Global-Ocean-Sampling_GS-35-01-01-1...    38   3.5    2
(CU928789) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   3.5    7
(FD465447) LARWB76TF Haematobia irritans 1st Instar Larvae H...    36   3.6    2
(AM486724) Vitis vinifera contig VV78X120395.8, whole genome...    32   3.6    2
(AC023347) Homo sapiens BAC clone RP11-507H23 from 2, comple...    36   3.7    5
(CT868734) Mouse DNA sequence from clone RP23-427B21 on chro...    38   3.8    3
(AZ545376) ENTFP91TR Entamoeba histolytica Sheared DNA Entam...    34   3.9    2
(AC117080) Dictyostelium discoideum chromosome 2 map complem...    34   3.9    5
(AG294799) Mus musculus molossinus DNA, clone:MSMg01-070O03....    32   3.9    2
(ED470496) AUAC-aaj56b01.b1 Ascaris suum whole genome shotgu...    34   3.9    2
(DX443288) BE1030_M07_R IASMA L1 HindIII BAC library Vitis v...    32   3.9    2
(AC004688) Plasmodium falciparum chromosome 12 clone PFYAC69...    30   3.9    8
(ER421726) 1092963710694 Global-Ocean-Sampling_GS-35-01-01-1...    32   4.2    3
(AM451083) Vitis vinifera contig VV78X009097.15, whole genom...    34   4.4    3
(AC179840) Strongylocentrotus purpuratus clone R3-1012B12, W...    36   4.6    4
(AC172520) Bos taurus clone CH240-301D17, WORKING DRAFT SEQU...    38   4.7    4
(AC187862) Populus trichocarpa clone Pop1-1L5, complete sequ...    44   4.9    2
(AC170780) Bos taurus clone CH240-248D6, WORKING DRAFT SEQUE...    42   5.1    3
(BD452793) Diagnosis of Diseases Associated with tumor suppr...    36   5.8    3
(AX251272) Sequence 240 from Patent WO0168912.                     36   5.8    3
(AC182722) Populus trichocarpa clone Pop1-92L17, complete se...    34   5.9    5
(BX927328) Zebrafish DNA sequence from clone CH211-10M4 in l...    44   5.9    1
(BX537308) Zebrafish DNA sequence from clone DKEY-231A18 in ...    44   5.9    1
(CT025155) Mouse DNA sequence from clone RP23-228F18 on chro...    44   5.9    1
(AC194798) Pan troglodytes BAC clone CH251-685F15 from chrom...    44   5.9    1
(AM482763) Vitis vinifera contig VV78X093132.14, whole genom...    44   5.9    1
(AM425537) Vitis vinifera contig VV78X026104.4, whole genome...    44   5.9    1
(AF034718) Gracilaria robusta plasmid Gro4970, complete sequ...    44   5.9    1
(DL064443) Cancer Gene Determination and Therapeutic Screeni...    44   5.9    1
(DL064206) Cancer Gene Determination and Therapeutic Screeni...    44   5.9    1
(AX411306) Sequence 3953 from Patent WO0229103.                    44   5.9    1
(AX333047) Sequence 3556 from Patent WO0194629.                    44   5.9    1
(AX332810) Sequence 3319 from Patent WO0194629.                    44   5.9    1
(AR783387) Sequence 3950 from patent US 6974667.                   44   5.9    1
(EF173371) Aedes aegypti clone BAC ND22N19, complete sequence.     44   5.9    1
(AP009009) Bombyx mori genomic DNA, chromosome 4, BAC clone:...    44   5.9    1
(AB125745) Achaearanea tepidariorum MEF-2 mRNA for myocyte e...    44   5.9    1
(Z84721) Human DNA sequence from cosmid GG1 from a contig fr...    44   5.9    1
(DQ431198) Homo sapiens interleukin 9 receptor (IL9Rps) pseu...    44   5.9    1
(BX293538) Human DNA sequence from clone RP11-69A21 on chrom...    44   5.9    1
(AL353999) Homo sapiens chromosome X sequence from BAC CEPHB...    44   5.9    1
(AE006462) Homo sapiens 16p13.3 sequence section 1 of 8.           44   5.9    1
(AC231950) Homo sapiens FOSMID clone ABC14-50127000A8 from c...    44   5.9    1
(AC010722) Homo sapiens BAC clone RP11-122L9 from Y, complet...    44   5.9    1
(AC004388) Homo Sapiens Chromosome X clone bWXD306, complete...    44   5.9    1
(AC158247) Callithrix jacchus clone CH259-355N21, WORKING DR...    44   5.9    1
(AC151163) Bos taurus clone CH240-479N6, WORKING DRAFT SEQUE...    44   5.9    1
(AC151090) Bos taurus clone CH240-117L14, WORKING DRAFT SEQU...    44   5.9    1
(AC150295) Callithrix jacchus clone CH259-365H18, WORKING DR...    44   5.9    1
(AC150010) Callithrix jacchus clone CH259-323P5, WORKING DRA...    44   5.9    1
(AC149792) Aedes aegypti clone NDL.22N19, *** SEQUENCING IN ...    44   5.9    1
(AC146900) Hylobates klossii clone RZ140-372H11, WORKING DRA...    44   5.9    1
(AC115979) Mus musculus clone RP24-90G7, LOW-PASS SEQUENCE S...    44   5.9    1
(AC095393) Rattus norvegicus clone CH230-7D16, *** SEQUENCIN...    44   5.9    1
(CU694745) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.9    1
(AC069076) Homo sapiens chromosome 10 clone RP11-236E16, WOR...    44   5.9    1
(AP010215) Lotus japonicus genomic DNA, clone: LjT17I13, TM1...    44   5.9    1
(AC234776) Homo sapiens chromosome X clone RP11-192I24, *** ...    44   5.9    1
(AC234117) Nomascus leucogenys leucogenys clone CH271-227A6,...    44   5.9    1
(AC224640) Bos taurus clone CH240-479M3, WORKING DRAFT SEQUE...    44   5.9    1
(AC201235) Strongylocentrotus purpuratus clone R3-15J8, WORK...    44   5.9    1
(AC200444) Pongo abelii chromosome 16 clone CH276-140O19, WO...    44   5.9    1
(AC200268) Pongo abelii chromosome 16 clone CH276-195G11, WO...    44   5.9    1
(AC197673) Zea mays chromosome 5 clone ZMMBBb-640H23; ZMMBBb...    44   5.9    1
(AC190359) Nomascus leucogenys leucogenys clone CH271-64P7, ...    44   5.9    1
(AC183280) Bos taurus clone CH240-98P23, WORKING DRAFT SEQUE...    44   5.9    1
(AC177479) Strongylocentrotus purpuratus clone R3-1030E24, W...    44   5.9    1
(AC177478) Strongylocentrotus purpuratus clone R3-1030E17, W...    44   5.9    1
(AC007604) Homo sapiens chromosome 16 clone RP11-344L6, WORK...    44   5.9    1
(AQ751946) HS_5569_B2_B07_T7A RPCI-11 Human Male BAC Library...    44   5.9    1
(ER544017) 1093016098480 Global-Ocean-Sampling_GS-35-01-01-1...    44   5.9    1
(EK536034) 1095516031494 Global-Ocean-Sampling_GS-32-01-01-1...    44   5.9    1
(EK357527) 1095468693779 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.9    1
(EK152907) 1095456061758 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.9    1
(EK086392) 1092961155018 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.9    1
(EJ375047) 1092963738212 Global-Ocean-Sampling_GS-28-01-01-1...    44   5.9    1
(EI260348) OR__Ba0066D15.f OR__Ba Oryza rufipogon genomic cl...    44   5.9    1
(ED997584) MUGQ_CH252P110F21Sp6_CN57_091 CHORI-252 Vervet Mo...    44   5.9    1
(DX552507) GH_MBb0032M10f GH_MBb Gossypium hirsutum genomic ...    44   5.9    1
(DX534478) GH_MBb0048G23r GH_MBb Gossypium hirsutum genomic ...    44   5.9    1
(DE403760) Bombyx mori genomic DNA, BAC clone:4E4H.                44   5.9    1
(DE347143) Bombyx mori genomic DNA, BAC clone:BET_053_O15.         44   5.9    1
(CZ763838) OC__Ba0118H13.r OC__Ba Oryza coarctata genomic cl...    44   5.9    1
(CT244159) Sus scrofa genomic clone PigE-6K13, genomic surve...    44   5.9    1
(BH937756) odg55a12.b1 B.oleracea002 Brassica oleracea genom...    44   5.9    1
(EH236437) JGI_ACAC18750.rev ACAC Phakopsora pachyrhizi TW72...    44   5.9    1
(EG760341) EST_ssal_sjb_8713 ssalsjb mixed_tissue Salmo sala...    44   5.9    1
(CD502528) CDA57-C01.y1d-s SHGC-CDA Gasterosteus aculeatus c...    44   5.9    1
(BY943309) Bombyx mori cDNA, clone:E_FL_e100_19N01_R_0, 3' e...    44   5.9    1
(BW002961) Ciona intestinalis cDNA, clone:rcibd018h19, 3' en...    44   5.9    1
(BQ230420) AGENCOURT_7565992 NIH_MGC_92 Homo sapiens cDNA cl...    44   5.9    1
(FF294907) 279303622 Pea aphid whole body normalized full le...    44   5.9    1
(FD457532) EGGBE60TR Haematobia irritans eggs Haematobia irr...    44   5.9    1
(EX988029) CBAC949.b1:P T. versicolor host exudate forward S...    44   5.9    1
(CP001047) Mycoplasma arthritidis 158L3-1, complete genome.        44   5.9    1
(DX471245) Cpl13302 Papaya Genomic DNA BAC Library Carica pa...    38   6.0    2
(AM437739) Vitis vinifera contig VV78X210554.7, whole genome...    40   6.0    2
(AC167217) Bos taurus clone CH240-167I21, *** SEQUENCING IN ...    34   6.0    4
(EU589576) Lonchoptera lutea putative hunchback (hb) gene, c...    36   6.0    2
(BU498030) PfESToab91g03.y1 Plasmodium falciparum 3D7 asexua...    38   6.0    2
(BQ451420) PfESToaa98h09.y1 Plasmodium falciparum 3D7 asexua...    38   6.0    2
(AC208629) Zea mays chromosome 2 clone CH201-239H18; ZMMBBc0...    36   6.1    3
(AC208396) Macaca mulatta chromosome UNKNOWN clone CH250-252...    42   6.1    4
(AC177333) Strongylocentrotus purpuratus clone R3-1032L15, W...    38   6.2    2
(AC188085) Macaca mulatta chromosome UNK clone CH250-95H12, ...    40   6.4    4
(DX461915) Cpl03632 Papaya Genomic DNA BAC Library Carica pa...    38   6.8    2
(AC222158) Bos taurus clone CH240-410O14, WORKING DRAFT SEQU...    42   6.8    2
(L17343) Helicoverpa punctigera tRNA-Met gene, partial seque...    34   6.8    3
(GE669603) CBUC4467.g1 B.anynana_abdomen_nosize Bicyclus any...    36   6.9    2
(GE669602) CBUC4467.b1 B.anynana_abdomen_nosize Bicyclus any...    36   6.9    2
(AP003988) Oryza sativa Japonica Group genomic DNA, chromoso...    38   7.0    4
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome.    34   7.1    9
(AC175875) Strongylocentrotus purpuratus clone R3-15D24, WOR...    38   7.1    3
(ET090005) QM0AAA14DB07FM1 CCL1 Citrus clementina genomic cl...    34   7.1    2
(BD452969) Diagnosis of Diseases Associated with tumor suppr...    34   7.2    3
(AX251448) Sequence 416 from Patent WO0168912.                     34   7.2    3
(CR927215) Zebrafish DNA sequence from clone DKEY-78I4.            42   7.4    2
(AC186779) Trichinella spiralis chromosome UNK clone TS195-4...    34   7.4    5
(AC177942) Zea mays chromosome 2 clone CH201-105B3; ZMMBBc01...    38   7.5    2
(AL844509) Plasmodium falciparum chromosome 13.                    34   7.5    11
(AC018548) Homo sapiens clone RP11-80F6, WORKING DRAFT SEQUE...    40   7.6    5
(CC957161) BOIEH48TF BO_1.4_1.6_KB_nuc Brassica oleracea gen...    30   7.7    3
(AC219587) Bos taurus clone CH240-328I7, WORKING DRAFT SEQUE...    34   7.7    4
(CT867957) Mouse DNA sequence from clone RP23-223P15 on chro...    38   7.9    4
(EJ574749) 1092960088433 Global-Ocean-Sampling_GS-29-01-01-1...    30   7.9    3
(BZ014456) oeg75d11.b1 B.oleracea002 Brassica oleracea genom...    30   8.1    3
(AP007990) Lotus japonicus genomic DNA, chromosome 4, clone:...    34   8.1    3
(AC145924) Pan troglodytes BAC clone RP43-19G18 from chromos...    36   8.1    4
(CE747839) tigr-gss-dog-17000369574263 Dog Library Canis lup...    38   8.4    2
(AX344761) Sequence 186 from Patent WO0200927.                     34   8.9    3
(CS790018) Sequence 1274 from Patent WO2005031001.                 36   9.1    4
(AC179074) Strongylocentrotus purpuratus clone R3-4009G11, W...    42   9.2    4
(AC128052) Rattus norvegicus clone CH230-456B24, WORKING DRA...    40   9.2    5
(AP004229) Oryza sativa Japonica Group genomic DNA, chromoso...    38   9.2    4
(EK254680) 1095462005394 Global-Ocean-Sampling_GS-31-01-01-1...    36   9.3    2
(AM644330) Entamoeba moshkovskii FIC GSS, clone mosh009b04.q1k.    38   9.4    2
(Z98551) Plasmodium falciparum MAL3P6.                             36   9.5    5
(AC144541) Medicago truncatula clone mth2-28a1, complete seq...    38   9.5    3
(GE734272) CBUH3750.b1 B.anynana_wing.LCPP_2-10kb Bicyclus a...    40   9.6    2
(EJ998629) 1093025004726 Global-Ocean-Sampling_GS-30-02-01-1...    40   9.7    2
(EJ857089) 1093017950318 Global-Ocean-Sampling_GS-30-02-01-1...    34   9.7    2
(CU694564) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   9.8    5
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7...    34   9.8    7
(CT033816) Zebrafish DNA sequence from clone CH211-109N19 in...    36   9.9    5
(AC187354) Callithrix jacchus BAC clone CH259-14H12 from chr...    38   9.9    2

>(AU261985) Dictyostelium discoideum vegetative cDNA clone:VSB380,
           3' end single read.
          Length = 555

 Score =  640 bits (323), Expect(3) = 0.0
 Identities = 323/323 (100%)
 Strand = Plus / Plus


Query: 88  agcaccaaagtaccctgaaaaaccaatagaggattttttaaaacaaaatgttttttattt 147
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56  agcaccaaagtaccctgaaaaaccaatagaggattttttaaaacaaaatgttttttattt 115


Query: 148 aaaccattattatgaaaattgtggtggcttgaagaattataaagaaataatatttactga 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 aaaccattattatgaaaattgtggtggcttgaagaattataaagaaataatatttactga 175


Query: 208 agaactactttcgttaaaacaaacagatgcagcaaaagttttgaatattacaacgaaatc 267
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 agaactactttcgttaaaacaaacagatgcagcaaaagttttgaatattacaacgaaatc 235


Query: 268 tcttttaaaattattaaaacatgcaatcaatgaaacagatggtttatcggaatactacaa 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tcttttaaaattattaaaacatgcaatcaatgaaacagatggtttatcggaatactacaa 295


Query: 328 taataaaagaaaaataatatggccacgtagaactgtaacttcaccattaatggtatatgt 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 taataaaagaaaaataatatggccacgtagaactgtaacttcaccattaatggtatatgt 355


Query: 388 ttatacaaacaaaggtatatctg 410
           |||||||||||||||||||||||
Sbjct: 356 ttatacaaacaaaggtatatctg 378

 Score = 67.9 bits (34), Expect(3) = 0.0
 Identities = 34/34 (100%)
 Strand = Plus / Plus


Query: 519 tcaaggatccttagaattaattatttaaataacc 552
           ||||||||||||||||||||||||||||||||||
Sbjct: 487 tcaaggatccttagaattaattatttaaataacc 520

 Score = 54.0 bits (27), Expect(3) = 0.0
 Identities = 27/27 (100%)
 Strand = Plus / Plus


Query: 560 ggtattaagtacataactagaaaataa 586
           |||||||||||||||||||||||||||
Sbjct: 528 ggtattaagtacataactagaaaataa 554

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 676,045,018
Number of extensions: 48189113
Number of successful extensions: 4672551
Number of sequences better than 10.0: 243
Length of query: 586
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 563
Effective length of database: 99,442,330,388
Effective search space: 55986032008444
Effective search space used: 55986032008444
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U04916-1 (Contig-U04916-1Q) /CSM_Contig/Contig-U04916-1Q.Seq.d
         (586 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL445564_101(AL445564|pid:none) Mycoplasma pulmonis (strain UAB ...    35   2.0
AE015927_647(AE015927|pid:none) Clostridium tetani E88, complete...    33   5.8
AF486555_2(AF486555|pid:none) Campylobacter jejuni strain RM2232...    32   9.9
(Q73QJ2) RecName: Full=Arginine deiminase;          Short=ADI;  ...    32   9.9

>AL445564_101(AL445564|pid:none) Mycoplasma pulmonis (strain UAB
           CTIP) complete genome; segment 2/3.  &F90559(F90559)
          Length = 1183

 Score = 34.7 bits (78), Expect = 2.0
 Identities = 24/81 (29%), Positives = 39/81 (48%)
 Frame = +2

Query: 104 EKPIEDFLKQNVFYLNHYYENCGGLKNYKEIIFTEELLSLKQTDAAKVLNITTKSLLKLL 283
           EK I   + +N    N  +E      +Y+EI+   +LL++   +  + LNI      K +
Sbjct: 606 EKSIAGNILKNYLLKNFNFEESISSLSYEEIVQNWKLLNV---NLIEFLNIKNNKYNKKI 662

Query: 284 KHAINETDGLSEYYNNKRKII 346
               N+ D LS Y +NK K+I
Sbjct: 663 FDIENKMDSLSTYVDNKNKLI 683

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 675,784,602
Number of extensions: 10915950
Number of successful extensions: 28643
Number of sequences better than 10.0: 4
Number of HSP's gapped: 28628
Number of HSP's successfully gapped: 4
Length of query: 195
Length of database: 1,061,185,681
Length adjustment: 122
Effective length of query: 73
Effective length of database: 662,435,025
Effective search space: 48357756825
Effective search space used: 48357756825
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.33  gvh: 0.32  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for Contig-U04916-1 is cyt
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0