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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01063-1
Contig ID Contig-U01063-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01063-1 (Contig-U01063-1Q) /CSM_Contig/Contig-U01063-1Q.Seq.d
TTAGATGAATTTTTACATGCTGCTGAAATTTTAGTTTTAGATAGATTAAA
AGAACATAAATCAATATTTGAAGCAAGTCCTGAATTATTAAATGATATTA
ATTTAACAAGTTCAACTAGTACAAGTAAACAATATATTGAAACTGATTCT
TTGAAACCAATTATAACCTATTTAAAATCAATTTATAATAAAACACCTTC
ACCATCATTAACTTCATCATTACCAATAGTCCCAACAACTTATACAACAA
CTACAACAACAAATGTACAATTATCAGCTTCTTCAACAATACCAATGGTT
CCAATAACAACAACAACAACAACAACAACTCCACCACCACTACAATCACC
AAGTACATTTAATTTATCATCAAGTATTGATCAAAATAATCCAAATCATC
CAAATAATCCACCAACTTTAACATCTTCACCATCTTTGACATCTTCAAAT
ATTATGAATCTAATTAATAATAATGTTATTAATAGTAGTCATCTTGGCGT
TGTATTGAAATTAATTTATTTGATTGAAGATGTAATCTACATAAGAGATA
TGAAATATTTAGAGGAAAAATATTACAATAATGATGTACTTAT
Gap no gap
Contig length 593
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 4375211
End point 4374618
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U01063
List of clone(s) 

est1=SFL257F,1,594
Translated Amino Acid sequence 
LDEFLHAAEILVLDRLKEHKSIFEASPELLNDINLTSSTSTSKQYIETDSLKPIITYLKS
IYNKTPSPSLTSSLPIVPTTYTTTTTTNVQLSASSTIPMVPITTTTTTTTPPPLQSPSTF
NLSSSIDQNNPNHPNNPPTLTSSPSLTSSNIMNLINNNVINSSHLGVVLKLIYLIEDVIY
IRDMKYLEEKYYNNDVL
Translated Amino Acid sequence (All Frames) 
Frame A:
LDEFLHAAEILVLDRLKEHKSIFEASPELLNDINLTSSTSTSKQYIETDSLKPIITYLKS
IYNKTPSPSLTSSLPIVPTTYTTTTTTNVQLSASSTIPMVPITTTTTTTTPPPLQSPSTF
NLSSSIDQNNPNHPNNPPTLTSSPSLTSSNIMNLINNNVINSSHLGVVLKLIYLIEDVIY
IRDMKYLEEKYYNNDVL


Frame B:
*mnfymllkf*f*id*kninqylkqvlny*mili*qvqlvqvnnilklil*nql*pi*nq
fiikhlhhh*lhhyq*sqqliqqlqqqmynyqllqqyqwfq*qqqqqqqlhhhynhqvhl
iyhqvlikiiqiiqiihql*hlhhl*hlqil*i*liimllivvilaly*n*fi*lkm*st
*ei*ni*rknitimmyl


Frame C:
r*iftcc*nfsfr*ikrt*ini*sks*iik*y*fnkfn*yk*tiy*n*ffetnynlfkin
l**ntftiinfiitnspnnlynnynnkctiisffnntngsnnnnnnnnnsttttitkyi*
fiiky*sk*skssk*stnfniftifdifkyyesn***cy***sswrcieinlfd*rcnlh
kryeifrgkilq**cty
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01063-1 (Contig-U01063-1Q)
/CSM_Contig/Contig-U01063-1Q.Seq.d
         (593 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01063-1 (Contig-U01063-1Q) /CSM_Contig/Conti...   605  e-173
Contig-U13069-1 (Contig-U13069-1Q) /CSM_Contig/Conti...    46  6e-05
Contig-U13871-1 (Contig-U13871-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U10814-1 (Contig-U10814-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U08006-1 (Contig-U08006-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U14698-1 (Contig-U14698-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12325-1 (Contig-U12325-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11813-1 (Contig-U11813-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U11211-1 (Contig-U11211-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U10975-1 (Contig-U10975-1Q) /CSM_Contig/Conti...    42  0.001

>Contig-U01063-1 (Contig-U01063-1Q) /CSM_Contig/Contig-U01063-1Q.Seq.d
          Length = 593

 Score =  605 bits (305), Expect = e-173
 Identities = 305/305 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagatgaatttttacatgctgctgaaattttagttttagatagattaaaagaacataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttagatgaatttttacatgctgctgaaattttagttttagatagattaaaagaacataaa 60

                                                                       
Query: 61  tcaatatttgaagcaagtcctgaattattaaatgatattaatttaacaagttcaactagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcaatatttgaagcaagtcctgaattattaaatgatattaatttaacaagttcaactagt 120

                                                                       
Query: 121 acaagtaaacaatatattgaaactgattctttgaaaccaattataacctatttaaaatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acaagtaaacaatatattgaaactgattctttgaaaccaattataacctatttaaaatca 180

                                                                       
Query: 181 atttataataaaacaccttcaccatcattaacttcatcattaccaatagtcccaacaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atttataataaaacaccttcaccatcattaacttcatcattaccaatagtcccaacaact 240

                                                                       
Query: 241 tatacaacaactacaacaacaaatgtacaattatcagcttcttcaacaataccaatggtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tatacaacaactacaacaacaaatgtacaattatcagcttcttcaacaataccaatggtt 300

                
Query: 301 ccaat 305
           |||||
Sbjct: 301 ccaat 305


 Score =  523 bits (264), Expect = e-149
 Identities = 264/264 (100%)
 Strand = Plus / Plus

                                                                       
Query: 330 tccaccaccactacaatcaccaagtacatttaatttatcatcaagtattgatcaaaataa 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tccaccaccactacaatcaccaagtacatttaatttatcatcaagtattgatcaaaataa 389

                                                                       
Query: 390 tccaaatcatccaaataatccaccaactttaacatcttcaccatctttgacatcttcaaa 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tccaaatcatccaaataatccaccaactttaacatcttcaccatctttgacatcttcaaa 449

                                                                       
Query: 450 tattatgaatctaattaataataatgttattaatagtagtcatcttggcgttgtattgaa 509
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tattatgaatctaattaataataatgttattaatagtagtcatcttggcgttgtattgaa 509

                                                                       
Query: 510 attaatttatttgattgaagatgtaatctacataagagatatgaaatatttagaggaaaa 569
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 attaatttatttgattgaagatgtaatctacataagagatatgaaatatttagaggaaaa 569

                                   
Query: 570 atattacaataatgatgtacttat 593
           ||||||||||||||||||||||||
Sbjct: 570 atattacaataatgatgtacttat 593


>Contig-U13069-1 (Contig-U13069-1Q) /CSM_Contig/Contig-U13069-1Q.Seq.d
          Length = 754

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 378 tgatcaaaataatccaaatcatccaaataat 408
           ||||| ||||||||||||| |||||||||||
Sbjct: 368 tgatccaaataatccaaataatccaaataat 398


 Score = 40.1 bits (20), Expect = 0.004
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 384 aaataatccaaatcatccaaataatcca 411
           |||| |||||||| ||||||||||||||
Sbjct: 365 aaatgatccaaataatccaaataatcca 392


 Score = 34.2 bits (17), Expect = 0.23
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                
Query: 244 acaacaactacaacaacaaat 264
           |||||||| ||||||||||||
Sbjct: 712 acaacaacaacaacaacaaat 732


 Score = 32.2 bits (16), Expect = 0.90
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 355 acatttaatttatcat 370
           ||||||||||||||||
Sbjct: 427 acatttaatttatcat 412


 Score = 32.2 bits (16), Expect = 0.90
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 392 caaatcatccaaataatcca 411
           ||||| ||||||||||||||
Sbjct: 364 caaatgatccaaataatcca 383


 Score = 30.2 bits (15), Expect = 3.6
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 244 acaacaactacaacaacaa 262
           ||||||| |||||||||||
Sbjct: 724 acaacaaatacaacaacaa 742


>Contig-U13871-1 (Contig-U13871-1Q) /CSM_Contig/Contig-U13871-1Q.Seq.d
          Length = 1998

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 233  caacaacttatacaacaactacaacaacaa 262
            ||||||||  ||||||||||||||||||||
Sbjct: 1571 caacaactattacaacaactacaacaacaa 1600


 Score = 32.2 bits (16), Expect = 0.90
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                                
Query: 244  acaacaactacaacaacaaa 263
            |||||||| |||||||||||
Sbjct: 1524 acaacaacaacaacaacaaa 1543


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,831
Number of Sequences: 8361
Number of extensions: 21831
Number of successful extensions: 3801
Number of sequences better than 10.0: 782
length of query: 593
length of database: 7,895,291
effective HSP length: 16
effective length of query: 577
effective length of database: 7,761,515
effective search space: 4478394155
effective search space used: 4478394155
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.21
Homology vs DNA 
Query= Contig-U01063-1 (Contig-U01063-1Q) /CSM_Contig/Contig-U01063-1Q.Seq.d
         (593 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ390716) Dictyostelium discoideum cDNA clone:dds23a16, 5' ...   523   0.0    2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    36   0.003  12
(CR382400) Plasmodium falciparum chromosome 6, complete sequ...    34   0.010  12
(FM992693) Candida dubliniensis CD36 chromosome 6, complete ...    38   0.012  11
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    34   0.012  12
(AF079445) Dictyostelium discoideum TipC (tipC) gene, comple...    46   0.028  4
(BJ402608) Dictyostelium discoideum cDNA clone:dds17a15, 3' ...    44   0.035  2
(C94300) Dictyostelium discoideum slug cDNA, clone SSK760.         44   0.040  2
(CP000962) Clostridium botulinum A3 str. Loch Maree, complet...    34   0.043  16
(BJ402453) Dictyostelium discoideum cDNA clone:dds17a04, 3' ...    44   0.049  2
(C84147) Dictyostelium discoideum slug cDNA, clone SSC337.         44   0.050  2
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    34   0.087  8
(AL035476) Plasmodium falciparum MAL4P3.                           34   0.13   10
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ...    38   0.14   7
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ...    34   0.15   9
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    48   0.17   14
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    34   0.17   9
(AC159465) Pan troglodytes BAC clone CH251-325K10 from chrom...    36   0.20   6
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4...    32   0.22   11
(AM477099) Vitis vinifera contig VV78X120774.11, whole genom...    40   0.28   2
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    40   0.31   7
(AC219213) Solanum lycopersicum chromosome 6 clone C06HBa014...    40   0.32   6
(EK290793) 1095462329381 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.38   1
(DX542827) GH_MBb0045K21r GH_MBb Gossypium hirsutum genomic ...    48   0.38   1
(DQ093720) Fungal sp. aurim1143 small subunit ribosomal RNA ...    48   0.38   1
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    34   0.39   12
(CP000361) Arcobacter butzleri RM4018, complete genome.            40   0.40   16
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    34   0.42   9
(AC005308) Plasmodium falciparum chromosome 12 clone PFYAC49...    38   0.42   5
(AL049183) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    34   0.46   8
(AC004688) Plasmodium falciparum chromosome 12 clone PFYAC69...    34   0.55   6
(EJ959230) 1093018991922 Global-Ocean-Sampling_GS-30-02-01-1...    36   0.68   3
(AL844509) Plasmodium falciparum chromosome 13.                    42   0.72   16
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   0.76   13
(AC188708) Gallus gallus BAC clone CH261-174G4 from chromoso...    34   0.81   2
(DQ377079) Ophyra aenescens isolate Oa01Ssp tRNA-Met gene, p...    38   0.82   2
(BX842688) Zebrafish DNA sequence from clone DKEY-202E17 in ...    44   0.83   3
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome.      40   0.87   12
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s...    36   0.94   6
(GC699361) Sequence 14606 from patent US 6812339.                  38   1.0    2
(AC226153) Homo sapiens FOSMID clone ABC12-47035800F7 from c...    34   1.2    5
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9...    38   1.3    8
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         34   1.4    18
(AC181045) Strongylocentrotus purpuratus clone R3-3050I12, W...    36   1.4    3
(CU012062) S.lycopersicum DNA sequence from clone LE_HBa-53M...    32   1.5    7
(CT573123) Zebrafish DNA sequence from clone CH211-39K3 in l...    46   1.5    1
(AC195415) Pan troglodytes BAC clone CH251-254N15 from chrom...    46   1.5    1
(AC192063) Pan troglodytes BAC clone CH251-585E13 from chrom...    46   1.5    1
(AC190317) Rhesus Macaque  BAC CH250-340A9 () complete seque...    46   1.5    1
(AC160629) Medicago truncatula clone mth2-24p23, complete se...    46   1.5    1
(AC143339) Medicago truncatula clone mth2-20g20, complete se...    46   1.5    1
(CT737383) Pig DNA sequence from clone CH242-215D15 on chrom...    46   1.5    1
(Z86061) Human DNA sequence from clone RP1-117P19 on chromos...    46   1.5    1
(AC126754) Homo sapiens chromosome 19 clone P1-103340, compl...    46   1.5    1
(AC145047) Sus scrofa clone RP44-44B5, WORKING DRAFT SEQUENC...    46   1.5    1
(AC189929) Rhinolophus ferrumequinum clone VMRC7-173F6, WORK...    46   1.5    1
(CZ987054) 201161 Tomato MboI BAC Library Solanum lycopersic...    46   1.5    1
(BJ368276) Dictyostelium discoideum cDNA clone:ddc46d04, 5' ...    46   1.5    1
(FK258429) USDA-FP_194392 Asian citrus psyllid midgut (Hemip...    46   1.5    1
(CP001197) Desulfovibrio vulgaris str. 'Miyazaki F', complet...    46   1.5    1
(CP000609) Methanococcus maripaludis C5, complete genome.          46   1.5    1
(CR846096) Zebrafish DNA sequence from clone DKEYP-8C10 in l...    40   1.6    5
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    34   1.6    6
(CQ869722) Sequence 143 from Patent WO2004074320.                  38   1.6    2
(AC124233) Mus musculus chromosome 18 clone RP23-242B15 map ...    42   1.7    4
(AC108802) Mus musculus chromosome 12, clone RP23-220J1, com...    42   1.8    4
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   1.9    8
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    34   2.1    15
(BZ439570) BONAH57TF BO_1.6_2_KB_tot Brassica oleracea genom...    42   2.1    2
(AC084812) Homo sapiens chromosome 8 clone RP11-477F6 map 8,...    40   2.2    4
(CT009504) Mouse DNA sequence from clone RP23-149M9 on chrom...    42   2.2    4
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    42   2.2    6
(AM486602) Vitis vinifera contig VV78X259695.3, whole genome...    40   2.3    2
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    44   2.4    18
(AC180553) Strongylocentrotus purpuratus clone R3-3098C11, W...    34   2.5    7
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3...    30   2.6    12
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    32   2.6    16
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    32   2.6    16
(AC022274) Homo sapiens BAC clone RP11-697M17 from 8, comple...    34   2.6    6
(FH476657) CHO_OF4974xf22r1.ab1 CHO_OF4 Nicotiana tabacum ge...    36   2.7    2
(BX196540) Danio rerio genomic clone DKEY-210P6, genomic sur...    42   2.8    2
(CV234712) WS01215.B21.1_P02 PT-GT-FL-A-3 Populus trichocarp...    32   2.8    3
(CU137657) Medicago truncatula chromosome 5 clone mte1-29c13...    40   2.8    6
(ER338646) 1092344326079 Global-Ocean-Sampling_GS-34-01-01-1...    34   2.8    3
(EJ893917) 1093018457664 Global-Ocean-Sampling_GS-30-02-01-1...    32   2.9    3
(CR940368) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   3.0    2
(AP006716) Staphylococcus haemolyticus JCSC1435 DNA, complet...    40   3.0    20
(AL049180) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    38   3.1    7
(AB084781) Mycoplasma mobile genes for P123, Gli349, Gli521,...    40   3.2    3
(AL358942) Human DNA sequence from clone RP1-159M24 on chrom...    34   3.2    2
(CR847860) Zebrafish DNA sequence from clone DKEY-193E5 in l...    40   3.2    4
(ER348721) 1092345434525 Global-Ocean-Sampling_GS-34-01-01-1...    36   3.3    2
(AM443995) Vitis vinifera contig VV78X039856.5, whole genome...    34   3.7    3
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    36   3.8    7
(AC197317) Callicebus moloch clone LB5-91G8, WORKING DRAFT S...    36   3.8    4
(CR352235) Zebrafish DNA sequence from clone DKEY-14A21 in l...    40   3.8    2
(EI896343) VUH1-77N4TR VUUBBa (VUH1) Vigna unguiculata genom...    32   3.9    2
(FC699370) CAXX7620.fwd CAXX Lottia gigantea from male gonad...    32   3.9    2
(FC728685) CBBG4921.fwd CBBG Lottia gigantea 12,15,18h embry...    32   3.9    2
(FC586762) CAXP3822.fwd CAXP Lottia gigantea from head, foot...    32   3.9    2
(ER430107) 1092963773823 Global-Ocean-Sampling_GS-35-01-01-1...    32   3.9    2
(FC800033) CBGC3371.fwd CBGC Lottia gigantea 15h 18h embryos...    32   4.0    2
(EI851588) CAH1-8H1TR CAA1Ba Cicer arietinum genomic clone C...    34   4.0    2
(AC064868) Homo sapiens BAC clone RP11-473E10 from 2, comple...    36   4.1    5
(AM285302) Spiroplasma citri GII3-3X chromosome, contig Cont...    34   4.2    7
(AC210338) Populus trichocarpa clone POP066-N19, complete se...    38   4.4    4
(AM478171) Vitis vinifera contig VV79X002395.2, whole genome...    42   4.4    2
(AJ312397) Sulfolobus solfataricus tef1 gene for elongation ...    36   4.5    2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    30   4.7    10
(AC223002) Bos taurus clone CH240-432J2, WORKING DRAFT SEQUE...    44   4.8    3
(AY128101) Lycopersicon esculentum isolate vis1-hta small he...    34   5.1    3
(AL163153) Human chromosome 14 DNA sequence BAC R-16O13 of l...    38   5.1    4
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...    30   5.1    7
(AC149902) Strongylocentrotus purpuratus clone R3-12E1, WORK...    40   5.1    4
(AY128102) Lycopersicon esculentum isolate vis1-lta small he...    34   5.2    3
(CR936365) Zebrafish DNA sequence from clone CH73-41C10 in l...    34   5.3    7
(AC116987) Dictyostelium discoideum chromosome 2 map 3527441...    30   5.5    7
(AC018879) Homo sapiens chromosome 14 clone RP11-332O9, WORK...    34   5.6    5
(AC171871) Bos taurus clone CH240-307J2, WORKING DRAFT SEQUE...    44   5.6    3
(AC172160) Pan troglodytes chromosome X clone PTB-96F20 map ...    44   6.0    1
(AM426011) Vitis vinifera contig VV78X178017.11, whole genom...    44   6.0    1
(AL161513) Arabidopsis thaliana DNA chromosome 4, contig fra...    44   6.0    1
(AF128396) Arabidopsis thaliana BAC T3H13.                         44   6.0    1
(AC210135) Populus trichocarpa clone POP101-G08, complete se...    44   6.0    1
(AC186736) Glycine max clone gmp1-63m15, complete sequence.        44   6.0    1
(AF315553) Homo sapiens PRKY gene, partial sequence, in clon...    44   6.0    1
(AC069067) Homo sapiens 3 BAC RP11-454C18 (Roswell Park Canc...    44   6.0    1
(AC017016) Homo sapiens BAC clone RP11-152H13 from 3, comple...    44   6.0    1
(AC010104) Homo sapiens BAC clone RP11-540C18 from Y, comple...    44   6.0    1
(AC162431) Papio hamadryas clone RP41-121N17, WORKING DRAFT ...    44   6.0    1
(AC162126) Atelerix albiventris clone LB4-1O24, WORKING DRAF...    44   6.0    1
(AC161711) Atelerix albiventris clone LB4-169B23, WORKING DR...    44   6.0    1
(AC135199) Rattus norvegicus clone CH230-396I7, *** SEQUENCI...    44   6.0    1
(AC112332) Rattus norvegicus clone CH230-278L12, WORKING DRA...    44   6.0    1
(AC098037) Rattus norvegicus clone CH230-90F19, *** SEQUENCI...    44   6.0    1
(CU914570) Phaseolus vulgaris sequence from BAC clone pva1-4...    44   6.0    1
(CU861631) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.0    1
(CU855819) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.0    1
(AC083953) Homo sapiens chromosome UL clone RP11-686H4, WORK...    44   6.0    1
(AL844507) Plasmodium falciparum chromosome 8.                     44   6.0    1
(AC233971) Pan troglodytes chromosome X clone PTB-127E7 map ...    44   6.0    1
(AC182965) Bos taurus clone CH240-239N22, WORKING DRAFT SEQU...    44   6.0    1
(AC021819) Homo sapiens chromosome 9 clone RP11-38L20 map 9,...    44   6.0    1
(ER560853) 1093015744365 Global-Ocean-Sampling_GS-36-01-01-2...    44   6.0    1
(ER468532) 1092963939351 Global-Ocean-Sampling_GS-35-01-01-1...    44   6.0    1
(ER422832) 1092963719709 Global-Ocean-Sampling_GS-35-01-01-1...    44   6.0    1
(EK428366) 1095516060101 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.0    1
(EK165634) 1095458050786 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.0    1
(AM688492) Entamoeba terrapinae GSS, clone terra267g07.p1k.        44   6.0    1
(EJ613377) 1092963001136 Global-Ocean-Sampling_GS-29-01-01-1...    44   6.0    1
(EJ039518) 1095454085110 Global-Ocean-Sampling_GS-26-01-01-1...    44   6.0    1
(EI786601) CHORI518011D11TF BAC library from the breast cell...    44   6.0    1
(EI342716) GM_WBc0087D13.f GM_WBc Glycine max genomic clone ...    44   6.0    1
(EI302139) GM_WBc0028M07.r GM_WBc Glycine max genomic clone ...    44   6.0    1
(ED790432) GM_WBb0173H17.r GM_WBb Glycine max genomic clone ...    44   6.0    1
(ED755534) GM_WBb0123N18.r GM_WBb Glycine max genomic clone ...    44   6.0    1
(ED744529) GM_WBb0108B23.r GM_WBb Glycine max genomic clone ...    44   6.0    1
(DU961806) 237412 Tomato MboI BAC Library Solanum lycopersic...    44   6.0    1
(DH732977) Rattus norvegicus DNA, BAC clone: RNB1-304H08, 5'...    44   6.0    1
(CZ498764) GMW2-16L2a.g1 GMW2 Glycine max genomic, genomic s...    44   6.0    1
(BZ570115) msh2_1171.y2 msh Pseudomonas aeruginosa genomic c...    44   6.0    1
(EL418969) CHCL7362.b1_C17.ab1 CHC(LMS) Texas blueweed Helia...    44   6.0    1
(EE599671) TOMOV-BT010_H08 Whitefly Bemisia tabaci (reared o...    44   6.0    1
(EC153116) KME00014582 Karlodinium micrum Non-normalized Kar...    44   6.0    1
(DW257291) UI-S-GG0-aas-p-20-0-UI.s1 UI-S-GG0 Euprymna scolo...    44   6.0    1
(FG762703) G1146P348RI10.T0 Anolis carolinensis pooled norma...    44   6.0    1
(FG762655) G1146P348FI10.T0 Anolis carolinensis pooled norma...    44   6.0    1
(FG759676) G1146P340RJ9.T0 Anolis carolinensis pooled normal...    44   6.0    1
(FG759631) G1146P340FJ9.T0 Anolis carolinensis pooled normal...    44   6.0    1
(EX148562) cr25_B14 Saffron (Crocus sativus) mature stigma l...    44   6.0    1
(EX144997) cr7_O10 Saffron (Crocus sativus) mature stigma la...    44   6.0    1
(EX144453) cr16_B17 Saffron (Crocus sativus) mature stigma l...    44   6.0    1
(EX144059) cr26_G03 Saffron (Crocus sativus) mature stigma l...    44   6.0    1
(EX143244) cr28_L05 Saffron (Crocus sativus) mature stigma l...    44   6.0    1
(EX142794) cr12_I11 Saffron (Crocus sativus) mature stigma l...    44   6.0    1
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    44   6.0    1
(BA000028) Oceanobacillus iheyensis HTE831 DNA, complete gen...    44   6.0    1
(CU927999) S.lycopersicum DNA sequence from clone SL_MboI-82...    38   6.0    2
(AC072044) Homo sapiens 3 BAC RP11-213O23 (Roswell Park Canc...    38   6.1    4
(AC121048) Rattus norvegicus clone CH230-401K21, WORKING DRA...    38   6.1    4
(AC122216) Mus musculus BAC clone RP23-118H9 from 5, complet...    42   6.2    3
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co...    30   6.3    7
(AC199268) Nomascus leucogenys leucogenys clone CH271-441B22...    36   6.7    4
(AC161848) Bos taurus clone CH240-100I10, WORKING DRAFT SEQU...    36   6.8    3
(DX533233) GH_MBb0041C13r GH_MBb Gossypium hirsutum genomic ...    32   6.8    3
(AC176951) Strongylocentrotus purpuratus clone R3-34E13, WOR...    38   7.1    6
(CU457420) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   7.3    2
(AC189690) Pan troglodytes BAC clone CH251-562I20 from chrom...    32   7.6    7
(CW164196) 104_572_11151858_148_36463_077 Sorghum methylatio...    30   7.9    3
(AC149425) Populus trichocarpa clone Pop1-041F22, complete s...    34   7.9    5
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   8.1    10
(FM992692) Candida dubliniensis CD36 chromosome 5, complete ...    34   8.2    15
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       38   8.3    9
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ...    34   8.4    6
(AM460056) Vitis vinifera contig VV78X069345.5, whole genome...    34   8.5    4
(AC178475) Strongylocentrotus purpuratus clone R3-3039B24, W...    38   8.7    5
(CR382371) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   9.6    3
(EH214385) USDA-FP_177168 WHMH (pink hibiscus mealybug) Maco...    36   9.8    2
(CN760366) ID0AAA28AH11RM1 ApMS Acyrthosiphon pisum cDNA clo...    30   10.0   3

>(BJ390716) Dictyostelium discoideum cDNA clone:dds23a16, 5' end,
           single read.
          Length = 594

 Score =  523 bits (264), Expect(2) = 0.0
 Identities = 264/264 (100%)
 Strand = Plus / Plus


Query: 330 tccaccaccactacaatcaccaagtacatttaatttatcatcaagtattgatcaaaataa 389
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tccaccaccactacaatcaccaagtacatttaatttatcatcaagtattgatcaaaataa 389


Query: 390 tccaaatcatccaaataatccaccaactttaacatcttcaccatctttgacatcttcaaa 449
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tccaaatcatccaaataatccaccaactttaacatcttcaccatctttgacatcttcaaa 449


Query: 450 tattatgaatctaattaataataatgttattaatagtagtcatcttggcgttgtattgaa 509
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tattatgaatctaattaataataatgttattaatagtagtcatcttggcgttgtattgaa 509


Query: 510 attaatttatttgattgaagatgtaatctacataagagatatgaaatatttagaggaaaa 569
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 attaatttatttgattgaagatgtaatctacataagagatatgaaatatttagaggaaaa 569


Query: 570 atattacaataatgatgtacttat 593
           ||||||||||||||||||||||||
Sbjct: 570 atattacaataatgatgtacttat 593

 Score =  460 bits (232), Expect(2) = 0.0
 Identities = 232/232 (100%)
 Strand = Plus / Plus


Query: 1   ttagatgaatttttacatgctgctgaaattttagttttagatagattaaaagaacataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttagatgaatttttacatgctgctgaaattttagttttagatagattaaaagaacataaa 60


Query: 61  tcaatatttgaagcaagtcctgaattattaaatgatattaatttaacaagttcaactagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcaatatttgaagcaagtcctgaattattaaatgatattaatttaacaagttcaactagt 120


Query: 121 acaagtaaacaatatattgaaactgattctttgaaaccaattataacctatttaaaatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acaagtaaacaatatattgaaactgattctttgaaaccaattataacctatttaaaatca 180


Query: 181 atttataataaaacaccttcaccatcattaacttcatcattaccaatagtcc 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atttataataaaacaccttcaccatcattaacttcatcattaccaatagtcc 232

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 769,781,866
Number of extensions: 50235465
Number of successful extensions: 4501188
Number of sequences better than 10.0: 201
Length of query: 593
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 570
Effective length of database: 99,442,330,388
Effective search space: 56682128321160
Effective search space used: 56682128321160
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.14
Homology vs Protein 
Query= Contig-U01063-1 (Contig-U01063-1Q) /CSM_Contig/Contig-U01063-1Q.Seq.d
         (593 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE016879_1761(AE016879|pid:none) Bacillus anthracis str. Ames, c...    34   2.6
AP006628_66(AP006628|pid:none) Onion yellows phytoplasma OY-M DN...    34   2.6
FM992691_141(FM992691|pid:none) Candida dubliniensis CD36 chromo...    33   5.9

>AE016879_1761(AE016879|pid:none) Bacillus anthracis str. Ames,
           complete genome.  &AE017225_1758(AE017225|pid:none)
           &AE017334_1750(AE017334|pid:none)
           &CP001215_2577(CP001215|pid:none)
           &CP001598_1671(CP001598|pid:none)
          Length = 478

 Score = 34.3 bits (77), Expect = 2.6
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = +1

Query: 19  AAEILVLDRLKEHKSIFEASPELLNDINLTSSTSTSKQYIETDSLKPIITYLKSIYNK 192
           A++I+  + +K+  SIFE +P +L    L      + + +  + L+PI+ Y+K   NK
Sbjct: 109 ASDIIYTNNIKKRLSIFEKNPSILGYPILEREKGKTAEELMLEVLEPILNYIKKDPNK 166

Lambda     K      H
   0.316    0.135    0.355

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 429,124,433
Number of extensions: 5604206
Number of successful extensions: 13490
Number of sequences better than 10.0: 3
Number of HSP's gapped: 13488
Number of HSP's successfully gapped: 3
Length of query: 197
Length of database: 1,051,180,864
Length adjustment: 122
Effective length of query: 75
Effective length of database: 656,320,666
Effective search space: 49224049950
Effective search space used: 49224049950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.46  alm: 0.31  top: 0.30  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: endoplasmic reticulum
	 12.0 %: plasma membrane
	 12.0 %: vesicles of secretory system
	  8.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for Contig-U01063-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0