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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04911-1
Contig ID Contig-U04911-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04911-1 (Contig-U04911-1Q) /CSM_Contig/Contig-U04911-1Q.Seq.d
AACAACAATAAATAATATTAAACAAAAACTTCTAAAAAAAAATATATAAT
TAAAATGACAATTATTGAATCTATTTATTCATTATCCCCAGCATTATCAC
CAAAAACTGGACCAACTAACTCAAATCTTACTCCAATAAATGATCCATTG
TTATTATCACCAAATCCAAGTGGACTACACGGTGGCGCATCACCAAACCT
AAAAGCTTGCCTTAGAAACAAACCCTTACTCATAAATTTTGATCTTAACA
TGACTACAATCTCATTCAATTTCAATGGTCCACATTGTGGTTGTAATTAA
AGAAGGAGTTATCAAAAAAAAAAAAAAAAGAAAAAAAAAAGAAAAAAAAA
GAAAAAAAAAAAAAAAACAAAACTAACCAAAAAAAAAGATAATTTGTATC
AAATCCAAAATAAAAGTTTAATCAACTTATTTTTATT
Gap no gap
Contig length 437
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 8398162
End point 8398599
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 3
Link to clone list U04911
List of clone(s) 

est1=SSI490F,1,290
est2=SSD762E,3,438
est3=SSM543F,15,331
Translated Amino Acid sequence 
nnnk*y*TKTSKKKYIIKMTIIESIYSLSPALSPKTGPTNSNLTPINDPLLLSPNPSGLH
GGASPNLKACLRNKPLLINFDLNMTTISFNFNGPHCGCN*rrsyqkkkkkkkkrkkkkkk
kktkltkkkdnlyqiqnkslinlfl
Translated Amino Acid sequence (All Frames) 
Frame A:
nnnk*y*TKTSKKKYIIKMTIIESIYSLSPALSPKTGPTNSNLTPINDPLLLSPNPSGLH
GGASPNLKACLRNKPLLINFDLNMTTISFNFNGPHCGCN*rrsyqkkkkkkkkrkkkkkk
kktkltkkkdnlyqiqnkslinlfl


Frame B:
ttinnikqkllkkni*lk*qllnlfihypqhyhqkldqltqillq*mihcyyhqiqvdyt
vahhqt*klaletnpys*ililt*lqshsismvhivvvikegvikkkkkrkkkekkrkkk
kkqn*pkkkiicikskikv*styfy


Frame C:
qq*iilnknf*kkiyn*ndny*iylfiipsiitknwtn*lksysnk*siviitkskwttr
writkpkslp*kqtlthkf*s*hdynliqfqwstlwl*lkkelskkkkkekkkkkkekkk
knktnqkkr*fvsnpk*kfnqlifi
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04911-1 (Contig-U04911-1Q)
/CSM_Contig/Contig-U04911-1Q.Seq.d
         (437 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04911-1 (Contig-U04911-1Q) /CSM_Contig/Conti...   567  e-162
Contig-U12257-1 (Contig-U12257-1Q) /CSM_Contig/Conti...    38  0.008
Contig-U14197-1 (Contig-U14197-1Q) /CSM_Contig/Conti...    36  0.030
Contig-U06911-1 (Contig-U06911-1Q) /CSM_Contig/Conti...    36  0.030
Contig-U03646-1 (Contig-U03646-1Q) /CSM_Contig/Conti...    36  0.030
Contig-U13079-1 (Contig-U13079-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U12643-1 (Contig-U12643-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U04927-1 (Contig-U04927-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U01969-1 (Contig-U01969-1Q) /CSM_Contig/Conti...    34  0.12
Contig-U14742-1 (Contig-U14742-1Q) /CSM_Contig/Conti...    32  0.47

>Contig-U04911-1 (Contig-U04911-1Q) /CSM_Contig/Contig-U04911-1Q.Seq.d
          Length = 437

 Score =  567 bits (286), Expect = e-162
 Identities = 304/313 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaacaataaataatattaaacaaaaacttctnnnnnnnnntatataattaaaatgaca 60
           |||||||||||||||||||||||||||||||||         ||||||||||||||||||
Sbjct: 1   aacaacaataaataatattaaacaaaaacttctaaaaaaaaatatataattaaaatgaca 60

                                                                       
Query: 61  attattgaatctatttattcattatccccagcattatcaccaaaaactggaccaactaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  attattgaatctatttattcattatccccagcattatcaccaaaaactggaccaactaac 120

                                                                       
Query: 121 tcaaatcttactccaataaatgatccattgttattatcaccaaatccaagtggactacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcaaatcttactccaataaatgatccattgttattatcaccaaatccaagtggactacac 180

                                                                       
Query: 181 ggtggcgcatcaccaaacctaaaagcttgccttagaaacaaacccttactcataaatttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtggcgcatcaccaaacctaaaagcttgccttagaaacaaacccttactcataaatttt 240

                                                                       
Query: 241 gatcttaacatgactacaatctcattcaatttcaatggtccacattgtggttgtaattaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gatcttaacatgactacaatctcattcaatttcaatggtccacattgtggttgtaattaa 300

                        
Query: 301 agaaggagttatc 313
           |||||||||||||
Sbjct: 301 agaaggagttatc 313


 Score = 99.6 bits (50), Expect = 2e-21
 Identities = 50/50 (100%)
 Strand = Plus / Plus

                                                             
Query: 388 gataatttgtatcaaatccaaaataaaagtttaatcaacttatttttatt 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gataatttgtatcaaatccaaaataaaagtttaatcaacttatttttatt 437


>Contig-U12257-1 (Contig-U12257-1Q) /CSM_Contig/Contig-U12257-1Q.Seq.d
          Length = 1704

 Score = 38.2 bits (19), Expect = 0.008
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 389  ataatttgtatcaaatcca 407
            |||||||||||||||||||
Sbjct: 1422 ataatttgtatcaaatcca 1440


>Contig-U14197-1 (Contig-U14197-1Q) /CSM_Contig/Contig-U14197-1Q.Seq.d
          Length = 1162

 Score = 36.2 bits (18), Expect = 0.030
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 232 ataaattttgatcttaac 249
           ||||||||||||||||||
Sbjct: 511 ataaattttgatcttaac 494


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8977
Number of Sequences: 6905
Number of extensions: 8977
Number of successful extensions: 731
Number of sequences better than 10.0: 249
length of query: 437
length of database: 5,674,871
effective HSP length: 16
effective length of query: 421
effective length of database: 5,564,391
effective search space: 2342608611
effective search space used: 2342608611
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7. 5
Homology vs DNA 
Query= Contig-U04911-1 (Contig-U04911-1Q) /CSM_Contig/Contig-U04911-1Q.Seq.d
         (437 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU037538) Dictyostelium discoideum slug cDNA, clone SSD762.      513   e-175  3
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...   458   e-156  4
(AU074946) Dictyostelium discoideum slug cDNA, clone SSM543.      420   e-118  2
(AU073835) Dictyostelium discoideum slug cDNA, clone SSI490.      392   e-118  2
(CT573395) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.005  6
(BX510914) Zebrafish DNA sequence from clone DKEY-4D9 in lin...    50   0.071  1
(BX072571) Zebrafish DNA sequence from clone DKEY-238F24.          50   0.071  1
(AC183841) Myotis lucifugus clone CH235-61P6, WORKING DRAFT ...    36   0.16   2
(CR932399) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.28   1
(AC220539) Bos taurus clone CH240-354J24, WORKING DRAFT SEQU...    48   0.28   1
(DX540569) GH_MBb0030B04r GH_MBb Gossypium hirsutum genomic ...    48   0.28   1
(AG136214) Pan troglodytes DNA, clone: PTB-149L15.R.               48   0.28   1
(CR954166) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   0.40   3
(AJ293568) Yaba-like disease virus (YLDV), complete genome.        36   0.57   5
(AC208935) Populus trichocarpa clone JGIACSB1085-D05, comple...    34   0.70   5
(CR318668) Zebrafish DNA sequence from clone DKEYP-100A5 in ...    46   1.1    1
(AL929522) Zebrafish DNA sequence from clone CH211-157B19 in...    46   1.1    1
(FP016065) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.1    1
(AC188842) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    46   1.1    1
(AC184303) Strongylocentrotus purpuratus clone R3-15H3, WORK...    46   1.1    1
(AC182591) Bos taurus clone CH240-239A24, WORKING DRAFT SEQU...    46   1.1    1
(AC181677) Strongylocentrotus purpuratus clone R3-1040O2, WO...    46   1.1    1
(AC176240) Strongylocentrotus purpuratus clone R3-3061G11, W...    46   1.1    1
(AC175849) Strongylocentrotus purpuratus clone R3-15L14, WOR...    46   1.1    1
(CC114139) NDL.47L20.T7 Notre Dame Liverpool Aedes aegypti g...    46   1.1    1
(CR847793) Zebrafish DNA sequence from clone CH211-59D13.          44   1.1    2
(EI021878) bb23f01.f Dekkera bruxellensis Random Genomic Lib...    38   1.3    2
(AC106215) Rattus norvegicus clone CH230-82P21, WORKING DRAF...    44   1.4    2
(AC182560) Mimulus guttatus clone MGBa-24L12, complete seque...    44   1.5    4
(EI024818) bb36f02.f Dekkera bruxellensis Random Genomic Lib...    38   1.5    2
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    42   1.5    4
(AC122649) Rattus norvegicus clone CH230-192H17, *** SEQUENC...    44   1.6    2
(AM624879) Entamoeba dispar GSS, clone dispar113e05.q1k.           34   1.7    2
(AC189237) Brassica rapa subsp. pekinensis clone KBrB014O06,...    36   1.8    4
(AM627206) Entamoeba dispar GSS, clone dispar1f08.q1k.             34   1.8    2
(CR376735) Zebrafish DNA sequence from clone CH211-132G1 in ...    40   2.0    3
(AC095609) Rattus norvegicus clone CH230-7M12, WORKING DRAFT...    34   2.2    2
(CU539062) Zebrafish DNA sequence from clone CH73-211L20 in ...    38   2.8    3
(FC072766) EST_ssal_sja_401439 ssal_sja Salmo salar cDNA clo...    32   2.9    2
(CI590112) Oryza sativa Japonica Group cDNA, clone: J02B3036...    36   3.1    2
(CR388422) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   3.2    5
(CR388054) Zebrafish DNA sequence from clone CH211-82E18 in ...    44   3.8    2
(BD452827) Diagnosis of Diseases Associated with tumor suppr...    44   3.8    2
(AX346113) Sequence 1184 from Patent WO0200928.                    44   3.8    2
(AX251306) Sequence 274 from Patent WO0168912.                     44   3.8    2
(AC148341) Medicago truncatula chromosome 7 clone mth2-60e18...    40   4.0    3
(CU463790) Zebrafish DNA sequence from clone DKEY-262K9 in l...    44   4.4    1
(CR524483) Zebrafish DNA sequence from clone DKEY-151P21 in ...    44   4.4    1
(BX284697) Zebrafish DNA sequence from clone DKEY-7M11 in li...    44   4.4    1
(BX072576) Zebrafish DNA sequence from clone DKEY-242E21 in ...    44   4.4    1
(BX072533) Zebrafish DNA sequence from clone CH211-158C3 in ...    44   4.4    1
(BX005350) Zebrafish DNA sequence from clone DKEY-58C8 in li...    44   4.4    1
(AL929109) Zebrafish DNA sequence from clone CH211-134D6.          44   4.4    1
(AC192446) Pan troglodytes BAC clone CH251-115E24 from chrom...    44   4.4    1
(AC129161) Rattus norvegicus clone CH230-184M10, *** SEQUENC...    44   4.4    1
(AC123301) Rattus norvegicus clone CH230-381O23, *** SEQUENC...    44   4.4    1
(AC117152) Rattus norvegicus clone CH230-79H19, *** SEQUENCI...    44   4.4    1
(AC112020) Rattus norvegicus clone CH230-221G16, WORKING DRA...    44   4.4    1
(AC110483) Rattus norvegicus clone CH230-115K20, WORKING DRA...    44   4.4    1
(AC110101) Rattus norvegicus clone CH230-211K5, *** SEQUENCI...    44   4.4    1
(FP017148) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   4.4    1
(CU929367) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   4.4    1
(CU928018) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   4.4    1
(CU633481) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   4.4    1
(CU457799) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   4.4    1
(CU234137) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   4.4    1
(CR974481) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   4.4    1
(CR954303) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   4.4    1
(ER629219) 1093018401304 Global-Ocean-Sampling_GS-36-01-01-2...    44   4.4    1
(EK367538) 1095469403614 Global-Ocean-Sampling_GS-31-01-01-1...    44   4.4    1
(EK314059) 1095462406728 Global-Ocean-Sampling_GS-31-01-01-1...    44   4.4    1
(EJ862915) 1093018221541 Global-Ocean-Sampling_GS-30-02-01-1...    44   4.4    1
(EJ789941) 1093017371683 Global-Ocean-Sampling_GS-30-02-01-1...    44   4.4    1
(ED332226) AUAC-aar38b04.g1 Ascaris suum whole genome shotgu...    44   4.4    1
(ED179746) AUAC-aau58f11.g1 Ascaris suum whole genome shotgu...    44   4.4    1
(ED109446) AUAC-aat08b11.g1 Ascaris suum whole genome shotgu...    44   4.4    1
(ED063269) AUAC-aag32h08.g1 Ascaris suum whole genome shotgu...    44   4.4    1
(EH528437) FDR107-P00051-DEPE-R_P17 FDR107 Danio rerio cDNA ...    44   4.4    1
(EB982086) 15494205 ZF40 Danio rerio cDNA clone 4216418, mRN...    44   4.4    1
(EB770303) 1957247 AG03 Danio rerio cDNA clone 764746, mRNA ...    44   4.4    1
(DT086448) JGI_ANNK671.rev ANNK Pimephales promelas Whole (L...    44   4.4    1
(BE017207) fk77h05.y1 Zebrafish Research Genetics C32 fin Da...    44   4.4    1
(FP162964) Danio rerio EST, clone ZF_invA26d17 3'.                 44   4.4    1
(FG208065) Aabr04789 Antheraea assama fifth instar larval br...    44   4.4    1
(ES557934) est_e_glacialis1183 RightWhaleSkin Eubalaena glac...    44   4.4    1
(AW154014) fi29d06.y1 Sugano Kawakami zebrafish DRA Danio re...    44   4.4    1
(CP000021) Vibrio fischeri ES114 chromosome II, complete seq...    44   4.4    1
(CU896645) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   4.7    4
(CB664040) OSJNEd09I20.f OSJNEd Oryza sativa Japonica Group ...    36   4.8    2
(AJ272587) Bilobella massoudi mitochondrial partial COII gen...    40   5.0    2
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s...    36   5.1    6
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    32   7.1    8
(CU062526) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   7.2    3
(AC156605) Mus musculus chromosome 7, clone RP23-305G5, comp...    30   7.8    2
(AC156987) Mus musculus chromosome 7, clone RP23-78K13, comp...    30   7.8    2
(AC098214) Rattus norvegicus clone CH230-112P23, WORKING DRA...    30   7.8    2
(AC121733) Rattus norvegicus clone CH230-278C6, WORKING DRAF...    30   7.9    2
(FP102219) Medicago truncatula chromosome 5 clone mte1-46g2,...    38   8.0    2
(AC024072) Homo sapiens chromosome 10 clone RP11-267O2, comp...    32   8.0    2
(AC137996) Medicago truncatula clone mth2-19k16, complete se...    36   8.5    4
(AC144722) Medicago truncatula clone mth2-26h11, complete se...    36   8.5    4
(AX347058) Sequence 2129 from Patent WO0200928.                    32   9.2    2
(CT854525) Oryza sativa Indica Group EST sequence:OSIGCPI234...    36   9.3    2

>(AU037538) Dictyostelium discoideum slug cDNA, clone SSD762.
          Length = 436

 Score =  513 bits (259), Expect(3) = e-175
 Identities = 268/271 (98%)
 Strand = Plus / Plus


Query: 43  tatataattaaaatgacaattattgaatctatttattcattatccccagcattatcacca 102
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41  tatataattaaaatgacaattattgaatctatttattcattatccccagcattatcacca 100


Query: 103 aaaactggaccaactaactcaaatcttactccaataaatgatccattgttattatcacca 162
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 aaaactggaccaactaactcaaatcttactccaataaatgatccattgttattatcacca 160


Query: 163 aatccaagtggactacacggtggcgcatcaccaaacctaaaagcttgccttagaaacaaa 222
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 aatccaagtggactacacggtggcgcatcaccaaacctaaaagcttgccttagaaacaaa 220


Query: 223 cccttactcataaattttgatcttaacatgactacaatctcattcaatttcaatggtcca 282
           |||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 221 cccttattcataaattttgattttaacatgactacaatttcattcaatttcaatggtcca 280


Query: 283 cattgtggttgtaattaaagaaggagttatc 313
           |||||||||||||||||||||||||||||||
Sbjct: 281 cattgtggttgtaattaaagaaggagttatc 311

 Score = 99.6 bits (50), Expect(3) = e-175
 Identities = 50/50 (100%)
 Strand = Plus / Plus


Query: 388 gataatttgtatcaaatccaaaataaaagtttaatcaacttatttttatt 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gataatttgtatcaaatccaaaataaaagtttaatcaacttatttttatt 435

 Score = 61.9 bits (31), Expect(3) = e-175
 Identities = 31/31 (100%)
 Strand = Plus / Plus


Query: 3  caacaataaataatattaaacaaaaacttct 33
          |||||||||||||||||||||||||||||||
Sbjct: 1  caacaataaataatattaaacaaaaacttct 31

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 518,105,271
Number of extensions: 33774599
Number of successful extensions: 2611932
Number of sequences better than 10.0: 104
Length of query: 437
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 414
Effective length of database: 99,442,330,388
Effective search space: 41169124780632
Effective search space used: 41169124780632
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U04911-1 (Contig-U04911-1Q) /CSM_Contig/Contig-U04911-1Q.Seq.d
         (437 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115612_18(AC115612|pid:none) Dictyostelium discoideum chromoso...   161   6e-39
CP000316_2968(CP000316|pid:none) Polaromonas sp. JS666, complete...    35   0.82
(Q4FP52) RecName: Full=Histidinol-phosphate aminotransferase;   ...    33   3.1
AK072083_1(AK072083|pid:none) Oryza sativa Japonica Group cDNA c...    32   9.1

>AC115612_18(AC115612|pid:none) Dictyostelium discoideum chromosome
           2 map 6245135-6357017 strain AX4, complete sequence.
          Length = 262

 Score =  161 bits (408), Expect = 6e-39
 Identities = 74/77 (96%), Positives = 76/77 (98%)
 Frame = +1

Query: 67  ESIYSLSPALSPKTGPTNSNLTPINDPLLLSPNPSGLHGGASPNLKACLRNKPLLINFDL 246
           +SIYSLSPALSPKTGPTNSNLTPINDPLLLSPNPSGLHGGASPNLKACL+NKPLLINFD
Sbjct: 186 KSIYSLSPALSPKTGPTNSNLTPINDPLLLSPNPSGLHGGASPNLKACLKNKPLLINFDF 245

Query: 247 NMTTISFNFNGPHCGCN 297
           NMTTISFNFNGPHCGCN
Sbjct: 246 NMTTISFNFNGPHCGCN 262

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 552,591,771
Number of extensions: 10328846
Number of successful extensions: 27324
Number of sequences better than 10.0: 4
Number of HSP's gapped: 27313
Number of HSP's successfully gapped: 4
Length of query: 145
Length of database: 1,061,185,681
Length adjustment: 108
Effective length of query: 37
Effective length of database: 708,193,297
Effective search space: 26203151989
Effective search space used: 26203151989
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.81  gvh: 0.59  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal

>> prediction for Contig-U04911-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 3
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0