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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04907-1
Contig ID Contig-U04907-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U04907-1 (Contig-U04907-1Q) /CSM_Contig/Contig-U04907-1Q.Seq.d
CAATTAATAAAAGGTATATTAACTATTGATAGTTCATTTAGAAATTATAT
CGATCCTTTATTCAATAGTCAACTTGAAAATCAAATTCAACAATTAGAAT
CAGTAATTAGTTTACCAAATGATATGTTTAAATTAATATGTGGTCAGGGT
ATGTTAACTCAAGATCAAGGTTGGTTTACAAATAATTCGAAATTAATATT
TCCATCAATTGAAATTACTCAAAAAATTATTACAAACCCAAATCAAAATA
TGTTAAAAGCTTTACATCAAGAATTGTCTACATTAACATCAAGTTCTCAA
AGATTAGATGAATTATTTAATTCTTCATCAATTCCAAATAATCCATTAGG
TAATTTACCAATGGTGGTTGTTTCAAATTCTAATGATACAGAATCTTGGG
TTTCAAGACAACATCAATTATCAAAATTATCAAAAAACTCTTTTCAATTT
TCAATTTATTCAACTCATTTTATTCCAATAATAAAACCTGAAGTTGTAAT
TGTTCAAT
Gap no gap
Contig length 508
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 2927349
End point 2926841
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U04907
List of clone(s) 

est1=SSD741F,1,509
Translated Amino Acid sequence 
QLIKGILTIDSSFRNYIDPLFNSQLENQIQQLESVISLPNDMFKLICGQGMLTQDQGWFT
NNSKLIFPSIEITQKIITNPNQNMLKALHQELSTLTSSSQRLDELFNSSSIPNNPLGNLP
MVVVSNSNDTESWVSRQHQLSKLSKNSFQFSIYSTHFIPIIKPEVVIVQ
Translated Amino Acid sequence (All Frames) 
Frame A:
QLIKGILTIDSSFRNYIDPLFNSQLENQIQQLESVISLPNDMFKLICGQGMLTQDQGWFT
NNSKLIFPSIEITQKIITNPNQNMLKALHQELSTLTSSSQRLDELFNSSSIPNNPLGNLP
MVVVSNSNDTESWVSRQHQLSKLSKNSFQFSIYSTHFIPIIKPEVVIVQ


Frame B:
n**kvy*llivhleiisilysivnlkikfnn*nq*lvyqmicln*yvvrvc*lkikvglq
iirn*yfhqlkllkkllqtqikic*klyiknclh*hqvlkd*mnylilhqfqiih*viyq
wwlfqilmiqnlgfqdninyqnyqktlfnfqfiqlilfq**nlkl*lfn


Frame C:
inkryiny**fi*klyrsfiq*st*ksnstirisn*ftk*yv*inmwsgyvnsrsrlvyk
*feinisin*nysknyykpkskyvksftsrivyinikfskir*ii*ffinsk*sir*ftn
ggcfkf**yrilgfkttsiikiikklfsifnlfnsfysnnkt*scncs
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04907-1 (Contig-U04907-1Q)
/CSM_Contig/Contig-U04907-1Q.Seq.d
         (508 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04907-1 (Contig-U04907-1Q) /CSM_Contig/Conti...  1007  0.0
Contig-U10976-1 (Contig-U10976-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U04737-1 (Contig-U04737-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U11881-1 (Contig-U11881-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U11132-1 (Contig-U11132-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U10373-1 (Contig-U10373-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U05219-1 (Contig-U05219-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U13813-1 (Contig-U13813-1Q) /CSM_Contig/Conti...    34  0.14
Contig-U13131-1 (Contig-U13131-1Q) /CSM_Contig/Conti...    34  0.14
Contig-U12089-1 (Contig-U12089-1Q) /CSM_Contig/Conti...    34  0.14

>Contig-U04907-1 (Contig-U04907-1Q) /CSM_Contig/Contig-U04907-1Q.Seq.d
          Length = 508

 Score = 1007 bits (508), Expect = 0.0
 Identities = 508/508 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caattaataaaaggtatattaactattgatagttcatttagaaattatatcgatccttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caattaataaaaggtatattaactattgatagttcatttagaaattatatcgatccttta 60

                                                                       
Query: 61  ttcaatagtcaacttgaaaatcaaattcaacaattagaatcagtaattagtttaccaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttcaatagtcaacttgaaaatcaaattcaacaattagaatcagtaattagtttaccaaat 120

                                                                       
Query: 121 gatatgtttaaattaatatgtggtcagggtatgttaactcaagatcaaggttggtttaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatatgtttaaattaatatgtggtcagggtatgttaactcaagatcaaggttggtttaca 180

                                                                       
Query: 181 aataattcgaaattaatatttccatcaattgaaattactcaaaaaattattacaaaccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aataattcgaaattaatatttccatcaattgaaattactcaaaaaattattacaaaccca 240

                                                                       
Query: 241 aatcaaaatatgttaaaagctttacatcaagaattgtctacattaacatcaagttctcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aatcaaaatatgttaaaagctttacatcaagaattgtctacattaacatcaagttctcaa 300

                                                                       
Query: 301 agattagatgaattatttaattcttcatcaattccaaataatccattaggtaatttacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agattagatgaattatttaattcttcatcaattccaaataatccattaggtaatttacca 360

                                                                       
Query: 361 atggtggttgtttcaaattctaatgatacagaatcttgggtttcaagacaacatcaatta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atggtggttgtttcaaattctaatgatacagaatcttgggtttcaagacaacatcaatta 420

                                                                       
Query: 421 tcaaaattatcaaaaaactcttttcaattttcaatttattcaactcattttattccaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcaaaattatcaaaaaactcttttcaattttcaatttattcaactcattttattccaata 480

                                       
Query: 481 ataaaacctgaagttgtaattgttcaat 508
           ||||||||||||||||||||||||||||
Sbjct: 481 ataaaacctgaagttgtaattgttcaat 508


>Contig-U10976-1 (Contig-U10976-1Q) /CSM_Contig/Contig-U10976-1Q.Seq.d
          Length = 4198

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 79   aatcaaattcaacaattagaatca 102
            |||||||||||||||||| |||||
Sbjct: 2641 aatcaaattcaacaattacaatca 2664


 Score = 36.2 bits (18), Expect = 0.035
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 79   aatcaaattcaacaatta 96
            ||||||||||||||||||
Sbjct: 2983 aatcaaattcaacaatta 3000


 Score = 34.2 bits (17), Expect = 0.14
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 79   aatcaaattcaacaatt 95
            |||||||||||||||||
Sbjct: 2812 aatcaaattcaacaatt 2828


>Contig-U04737-1 (Contig-U04737-1Q) /CSM_Contig/Contig-U04737-1Q.Seq.d
          Length = 571

 Score = 38.2 bits (19), Expect = 0.009
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 77  aaaatcaaattcaacaatt 95
           |||||||||||||||||||
Sbjct: 438 aaaatcaaattcaacaatt 456


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,970
Number of Sequences: 6905
Number of extensions: 11970
Number of successful extensions: 1316
Number of sequences better than 10.0: 421
length of query: 508
length of database: 5,674,871
effective HSP length: 16
effective length of query: 492
effective length of database: 5,564,391
effective search space: 2737680372
effective search space used: 2737680372
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7. 5
Homology vs DNA 
Query= Contig-U04907-1 (Contig-U04907-1Q) /CSM_Contig/Contig-U04907-1Q.Seq.d
         (508 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU072222) Dictyostelium discoideum slug cDNA, clone SSD741.      476   e-130  1
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         32   0.012  16
(AE017244) Mycoplasma hyopneumoniae 7448, complete genome.         36   0.042  10
(AE017243) Mycoplasma hyopneumoniae J, complete genome.            36   0.056  9
(AF356600) Dictyostelium discoideum filament-interacting pro...    48   0.073  2
(AL445565) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    38   0.16   7
(AL360354) Plasmodium vivax telomeric YAC clone, complete fi...    38   0.24   4
(AL035476) Plasmodium falciparum MAL4P3.                           40   0.25   7
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    48   0.33   1
(AE017143) Haemophilus ducreyi strain 35000HP complete genome.     48   0.33   1
(CP000994) Borrelia recurrentis A1 plasmid pl124, complete s...    32   0.52   7
(AU073697) Dictyostelium discoideum slug cDNA, clone SSH877.       30   0.69   3
(CR377228) Zebrafish DNA sequence from clone DKEY-94P9 in li...    34   0.74   2
(CU207295) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   0.76   2
(AL354937) Human DNA sequence from clone RP11-50K12 on chrom...    40   0.88   4
(EJ416969) 1093012189620 Global-Ocean-Sampling_GS-28-01-01-1...    36   0.91   2
(CP000589) Ostreococcus lucimarinus CCE9901 chromosome 9, co...    46   1.3    1
(AX346233) Sequence 1304 from Patent WO0200928.                    46   1.3    1
(ER323184) 1092344191428 Global-Ocean-Sampling_GS-34-01-01-1...    46   1.3    1
(FD424845) T03R_T3_003_B05_29APR2004_045_ab1 CrUniGene root ...    46   1.3    1
(FD420070) 1_SM-JB_R10-A08_T3__A08_3100394_02_ab1 CrUniGene ...    46   1.3    1
(BY376254) Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDN...    38   1.3    2
(AC130804) Medicago truncatula chromosome 6 clone mth2-15l5,...    36   1.5    5
(CP000979) Borrelia duttonii Ly plasmid pl165, complete sequ...    32   1.8    7
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    34   2.3    8
(EJ641783) 1093011953739 Global-Ocean-Sampling_GS-29-01-01-1...    40   2.6    2
(CL541380) OB__Ba0063K07.f OB__Ba Oryza brachyantha genomic ...    32   3.4    2
(CL591568) OB__Ba0050H07.r OB__Ba Oryza brachyantha genomic ...    32   3.4    2
(BX936412) Zebrafish DNA sequence from clone DKEY-235H13.          42   3.4    3
(AC202575) Medicago truncatula clone mth2-167d3, WORKING DRA...    38   3.5    2
(AC215465) Solanum lycopersicum chromosome 2 clone C02SLe012...    44   5.1    1
(AC196764) Medicago truncatula chromosome 2 BAC clone mte1-5...    44   5.1    1
(EU643477) Adineta vaga clone Av_TEL_K_A retrotransposons Ju...    44   5.1    1
(AC157842) Meleagris gallopavo clone CH260-59P6, WORKING DRA...    44   5.1    1
(AC152897) Meleagris gallopavo clone CH260-25G16, WORKING DR...    44   5.1    1
(AY815929) Schistosoma japonicum SJCHGC02094 protein mRNA, c...    44   5.1    1
(ER483180) 1093015279720 Global-Ocean-Sampling_GS-35-01-01-1...    44   5.1    1
(EJ058439) 1095456049169 Global-Ocean-Sampling_GS-26-01-01-1...    44   5.1    1
(DX393920) GE__Sa0027A06.b1 Gossypium exiguum WGS library Go...    44   5.1    1
(EC821807) SME00009928 esmbsro2 Sawyeria marylandensis cDNA,...    44   5.1    1
(DY598331) KIDNEYF031281B7 POSSUM_01-POSSUM-KIDNEY-2KB Trich...    44   5.1    1
(DW089136) CLPY13255.b1_M02.ab1 CLP(XYZ) lettuce perennis La...    44   5.1    1
(DC230443) Plasmodium berghei strain ANKA cDNA clone:SG01865...    44   5.1    1
(CV754365) sjl31-002_D10_sjl31-002D10-T3_078.ab1 SJL Schisto...    44   5.1    1
(CV750869) SJL31-003_D02_SJL31-003D02-T3_014.ab1 SJL Schisto...    44   5.1    1
(CV750853) SJL31-003_B08_SJL31-003B08-T3_061.ab1 SJL Schisto...    44   5.1    1
(CV748005) SJL_34_004__4-4__76.T3_078.ab1 SJL Schistosoma ja...    44   5.1    1
(CV746736) SJL_31_006__1-5__32.T3_032.ab1 SJL Schistosoma ja...    44   5.1    1
(CV746310) SJL_31_003__1-2__58.T3_061.ab1 SJL Schistosoma ja...    44   5.1    1
(CV746239) SJL_31_003__1-2__12.T3_014.ab1 SJL Schistosoma ja...    44   5.1    1
(CV746058) G10_Sjl31-001G10-T3_072.ab1.bin SJL Schistosoma j...    44   5.1    1
(CV742444) SJAL_039_50.T3 SJL Schistosoma japonicum cDNA, mR...    44   5.1    1
(CV741069) SJAL_030_88.T3 SJL Schistosoma japonicum cDNA, mR...    44   5.1    1
(CV738974) SJAL_017_77.T3 SJL Schistosoma japonicum cDNA, mR...    44   5.1    1
(CV738052) SJAL_012_12.T3 SJL Schistosoma japonicum cDNA, mR...    44   5.1    1
(CV686487) sjs2-14-1_A06_sjs2-14-1A06-T3 SJS Schistosoma jap...    44   5.1    1
(CU567551) Theobroma cacao, mRNA sequence (KZ0ABM4YL16FM1).        44   5.1    1
(CU567467) Theobroma cacao, mRNA sequence (KZ0ABM4YH10FM1).        44   5.1    1
(CU567287) Theobroma cacao, mRNA sequence (KZ0ABM3YO07FM1).        44   5.1    1
(CU567235) Theobroma cacao, mRNA sequence (KZ0ABM3YL09FM1).        44   5.1    1
(CU567206) Theobroma cacao, mRNA sequence (KZ0ABM3YJ18FM1).        44   5.1    1
(CU567201) Theobroma cacao, mRNA sequence (KZ0ABM3YJ11FM1).        44   5.1    1
(CU566719) Theobroma cacao, mRNA sequence (KZ0ABM1YI23FM1).        44   5.1    1
(CU566695) Theobroma cacao, mRNA sequence (KZ0ABM1YG21FM1).        44   5.1    1
(BU773697) SJEFNF09 SJE Schistosoma japonicum cDNA similar t...    44   5.1    1
(FD101375) CBFH7408.g2 CBFH: Normalized blue catfish cDNA li...    44   5.1    1
(CT030245) M.truncatula DNA sequence from clone MTH2-59B18 o...    38   5.3    7
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ...    38   6.5    17
(FH229624) CHO_OF3404xg21r1.ab1 CHO_OF3 Nicotiana tabacum ge...    32   6.8    3
(AG354600) Mus musculus molossinus DNA, clone:MSMg01-152N07....    40   7.4    2
(CP000361) Arcobacter butzleri RM4018, complete genome.            42   7.6    14
(EK306512) 1095462383015 Global-Ocean-Sampling_GS-31-01-01-1...    34   8.3    2
(ER622791) 1093017465208 Global-Ocean-Sampling_GS-36-01-01-2...    38   8.6    2
(CU928237) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   8.7    6
(AC179906) Strongylocentrotus purpuratus clone R3-1003J17, W...    34   8.7    4
(AC168637) Strongylocentrotus purpuratus clone R3-3018H13, W...    30   9.0    2
(AC179883) Strongylocentrotus purpuratus clone R3-1006K22, W...    30   9.2    2
(AC178609) Strongylocentrotus purpuratus clone R3-3018N20, W...    30   9.3    2
(AC177692) Strongylocentrotus purpuratus clone R3-1013G6, WO...    30   9.3    2
(CP000672) Haemophilus influenzae PittGG, complete genome.         38   9.3    11

>(AU072222) Dictyostelium discoideum slug cDNA, clone SSD741.
          Length = 240

 Score =  476 bits (240), Expect = e-130
 Identities = 240/240 (100%)
 Strand = Plus / Plus


Query: 1   caattaataaaaggtatattaactattgatagttcatttagaaattatatcgatccttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caattaataaaaggtatattaactattgatagttcatttagaaattatatcgatccttta 60


Query: 61  ttcaatagtcaacttgaaaatcaaattcaacaattagaatcagtaattagtttaccaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttcaatagtcaacttgaaaatcaaattcaacaattagaatcagtaattagtttaccaaat 120


Query: 121 gatatgtttaaattaatatgtggtcagggtatgttaactcaagatcaaggttggtttaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gatatgtttaaattaatatgtggtcagggtatgttaactcaagatcaaggttggtttaca 180


Query: 181 aataattcgaaattaatatttccatcaattgaaattactcaaaaaattattacaaaccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aataattcgaaattaatatttccatcaattgaaattactcaaaaaattattacaaaccca 240

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 626,616,585
Number of extensions: 38641910
Number of successful extensions: 3095807
Number of sequences better than 10.0: 80
Length of query: 508
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 485
Effective length of database: 99,442,330,388
Effective search space: 48229530238180
Effective search space used: 48229530238180
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U04907-1 (Contig-U04907-1Q) /CSM_Contig/Contig-U04907-1Q.Seq.d
         (508 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116924_27(AC116924|pid:none) Dictyostelium discoideum chromoso...   117   1e-25
DQ208194_3(DQ208194|pid:none) Mayetiola destructor Mde8i18_1 gen...    42   0.007
CP001056_2865(CP001056|pid:none) Clostridium botulinum B str. Ek...    37   0.36
CP000123_803(CP000123|pid:none) Mycoplasma capricolum subsp. cap...    34   2.4
FM992690_531(FM992690|pid:none) Candida dubliniensis CD36 chromo...    34   2.4
BC166181_1(BC166181|pid:none) Xenopus tropicalis hypothetical pr...    33   3.1
AJ250862_10(AJ250862|pid:none) Bacillus sp. HIL-Y85/54728 mersac...    33   3.1
(O76329) RecName: Full=Interaptin; AltName: Full=Alpha-actinin B...    33   4.0
CP000675_2965(CP000675|pid:none) Legionella pneumophila str. Cor...    33   4.0
AE017354_2734(AE017354|pid:none) Legionella pneumophila subsp. p...    33   4.0
AB084781_1(AB084781|pid:none) Mycoplasma mobile genes for P123, ...    33   4.0
AM455332_2(AM455332|pid:none) Vitis vinifera contig VV78X002003....    33   5.3
AC166147_21(AC166147|pid:none) Medicago truncatula clone mth2-14...    33   5.3
CP000388_1812(CP000388|pid:none) Pseudoalteromonas atlantica T6c...    33   5.3
AP007154_368(AP007154|pid:none) Aspergillus oryzae RIB40 genomic...    32   6.9
CR628337_2719(CR628337|pid:none) Legionella pneumophila str. Len...    32   6.9
CU928175_393(CU928175|pid:none) Zygosaccharomyces rouxii strain ...    32   6.9
CT005271_427(CT005271|pid:none) Leishmania major strain Friedlin...    32   6.9
AP009484_116(AP009484|pid:none) Macrococcus caseolyticus JCSC540...    32   6.9
CP001322_4751(CP001322|pid:none) Desulfatibacillum alkenivorans ...    32   6.9
CP001176_945(CP001176|pid:none) Bacillus cereus B4264, complete ...    32   9.0
AM933172_2218(AM933172|pid:none) Salmonella enterica subsp. ente...    32   9.0
CP000485_865(CP000485|pid:none) Bacillus thuringiensis str. Al H...    32   9.0
FN357303_45(FN357303|pid:none) Schistosoma mansoni genome sequen...    32   9.0
CP000852_1191(CP000852|pid:none) Caldivirga maquilingensis IC-16...    32   9.0
AE017355_927(AE017355|pid:none) Bacillus thuringiensis serovar k...    32   9.0
CP001177_1043(CP001177|pid:none) Bacillus cereus AH187, complete...    32   9.0
CP000227_1006(CP000227|pid:none) Bacillus cereus Q1, complete ge...    32   9.0
CP001215_3439(CP001215|pid:none) Bacillus anthracis str. CDC 684...    32   9.0
AM920437_730(AM920437|pid:none) Penicillium chrysogenum Wisconsi...    32   9.0

>AC116924_27(AC116924|pid:none) Dictyostelium discoideum chromosome
           2 map 6357117-6445670 strain AX4, complete sequence.
          Length = 351

 Score =  117 bits (294), Expect = 1e-25
 Identities = 65/166 (39%), Positives = 96/166 (57%), Gaps = 1/166 (0%)
 Frame = +1

Query: 7   IKGILTIDSSFRNYIDPLFNSQLENQIQQLESVISLPNDMFKLICGQGMLTQDQGWFTNN 186
           +KGILTID +    I+      +   +  +     LPN+ FK  C  G L+ D GW +N
Sbjct: 176 VKGILTIDGTDIGVINDQKWLMIPRFLDMINYFKRLPNEEFKQFCRNGSLSIDYGWISNA 235

Query: 187 SKLIFPSIEITQKIITNPNQNMLKALHQELSTLTSSSQRLDELFNSSSIPNNPLGNLPMV 366
             L    I+ +Q +  NPNQN L  ++QELS +  ++  L++L+  +  P+ PLGNLPMV
Sbjct: 236 ISLPQSCIDKSQAVYYNPNQNYLNTIYQELSNMIPNANALNKLYKKAPNPSKPLGNLPMV 295

Query: 367 VVSNSNDTE-SWVSRQHQLSKLSKNSFQFSIYSTHFIPIIKPEVVI 501
           V+S+  D E SW  RQ +LS+LS NS Q +    HF+P  +P++VI
Sbjct: 296 VMSSDPDDEPSWFERQIKLSELSSNSIQLNC-QNHFVPFYQPKLVI 340

Lambda     K      H
   0.316    0.131    0.369

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 634,787,472
Number of extensions: 10784198
Number of successful extensions: 30021
Number of sequences better than 10.0: 30
Number of HSP's gapped: 30007
Number of HSP's successfully gapped: 30
Length of query: 169
Length of database: 1,061,185,681
Length adjustment: 119
Effective length of query: 50
Effective length of database: 672,240,369
Effective search space: 33612018450
Effective search space used: 33612018450
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.56  gvh: 0.42  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for Contig-U04907-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0