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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U01056-1
Contig ID Contig-U01056-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U01056-1 (Contig-U01056-1Q) /CSM_Contig/Contig-U01056-1Q.Seq.d
AGCCTTAAAAAAATAAAAAAAAAAGTCCGATCCTTCATTCCATAATAAGA
ATAATAATAAAAAAATGGATGTTGATAAACAAATGTTACAATGGAGAAAA
AGAGCATGGTTAAATTCAAATCAATTATATGGTGAATTAACAGATATTAT
TATTAAAGATACAGGATTTACAAGTTCATTTGCAAATTTAATAGATAATT
CAGAGGTTGATTCATTCTCAAAGAATATAGTAAACATATTTACAACAGCA
AATAAAACATTACCATTAATTAAAGATTTAATTTATAATGAATTCAATAC
CAAAGTATTAGCAGAGGGTGAAGGTTCAATATTACGTGGTAATAGTATAG
TTAATAAAATTGAAGGTGCATACCGTACGTTTAATCGGTGCAAATTATTT
AAGATTTGTTTTATCTGATTTAGTTACAAAAGTAGTTTTAGATTCTGATT
TAAAATTAGAAATTGATCCAAGAAAATTAAATGATTATTATGAAGATAAA
ATTGAATTTGAAAAAAAGGTAGCAGAAGNTTGAGTTGAGAGATAATCAAA
AATCATTACATAATATTGCACAACAATTTTTAGATAGAATTACAGA
Gap no gap
Contig length 596
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 708062
End point 708658
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U01056
List of clone(s) 

est1=SFL117F,1,597
Translated Amino Acid sequence 
alkk*KKKSDPSFHNKNNNKKMDVDKQMLQWRKRAWLNSNQLYGELTDIIIKDTGFTSSF
ANLIDNSEVDSFSKNIVNIFTTANKTLPLIKDLIYNEFNTKVLAEGEGSILRGNSIVNKI
EGAYRTFNRCKLFKICFI*fsykssfrf*fkirn*skkik*ll*r*n*i*kkgsrxls*e
iiknhyiilhnnf*ielq
Translated Amino Acid sequence (All Frames) 
Frame A:
slkkikkkvrsfip**e***kngc**tnvtmekksmvkfksiiw*inryyy*ryriykfi
ckfnr*frg*filkeyskhiynsk*nitin*rfnl**iqyqsisrg*rfnitw**ys**n
*rcipyv*svqii*dlfyli*lqk*f*ili*n*kliqen*miimkiklnlkkr*qkxelr
dnqkslhniaqqfldrit


Frame B:
alkk*KKKSDPSFHNKNNNKKMDVDKQMLQWRKRAWLNSNQLYGELTDIIIKDTGFTSSF
ANLIDNSEVDSFSKNIVNIFTTANKTLPLIKDLIYNEFNTKVLAEGEGSILRGNSIVNKI
EGAYRTFNRCKLFKICFI*fsykssfrf*fkirn*skkik*ll*r*n*i*kkgsrxls*e
iiknhyiilhnnf*ielq


Frame C:
p*knkkkspilhsiiriiikkwmlinkcyngekehg*iqinymvn*qilllkiqdlqvhl
qi**iiqrlihsqri**tylqqqikhyh*lki*fimnsipky*qrvkvqyyvviv*likl
kvhtvrliganylrfvlsdlvtkvvldsdlkleidprklndyyedkiefekkvaex*ver
*skiit*ycttifr*nyr
own update 2004. 6. 7
Homology vs CSM-cDNA 
Query= Contig-U01056-1 (Contig-U01056-1Q)
/CSM_Contig/Contig-U01056-1Q.Seq.d
         (596 letters)

Database: CSM
           8361 sequences; 7,895,291 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U01056-1 (Contig-U01056-1Q) /CSM_Contig/Conti...  1045  0.0
Contig-U13593-1 (Contig-U13593-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U12018-1 (Contig-U12018-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U09155-1 (Contig-U09155-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U06838-1 (Contig-U06838-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U14173-1 (Contig-U14173-1Q) /CSM_Contig/Conti...    36  0.058
Contig-U11881-1 (Contig-U11881-1Q) /CSM_Contig/Conti...    36  0.058
Contig-U14599-1 (Contig-U14599-1Q) /CSM_Contig/Conti...    34  0.23
Contig-U14219-1 (Contig-U14219-1Q) /CSM_Contig/Conti...    34  0.23
Contig-U13836-1 (Contig-U13836-1Q) /CSM_Contig/Conti...    34  0.23

>Contig-U01056-1 (Contig-U01056-1Q) /CSM_Contig/Contig-U01056-1Q.Seq.d
          Length = 596

 Score = 1045 bits (527), Expect = 0.0
 Identities = 558/572 (97%)
 Strand = Plus / Plus

                                                                       
Query: 25  gtccgatccttcattccataataagaataataatnnnnnnntggatgttgataaacaaat 84
           ||||||||||||||||||||||||||||||||||       |||||||||||||||||||
Sbjct: 25  gtccgatccttcattccataataagaataataataaaaaaatggatgttgataaacaaat 84

                                                                       
Query: 85  gttacaatggagaaaaagagcatggttaaattcaaatcaattatatggtgaattaacaga 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  gttacaatggagaaaaagagcatggttaaattcaaatcaattatatggtgaattaacaga 144

                                                                       
Query: 145 tattattattaaagatacaggatttacaagttcatttgcaaatttaatagataattcaga 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 tattattattaaagatacaggatttacaagttcatttgcaaatttaatagataattcaga 204

                                                                       
Query: 205 ggttgattcattctcaaagaatatagtaaacatatttacaacagcaaataaaacattacc 264
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggttgattcattctcaaagaatatagtaaacatatttacaacagcaaataaaacattacc 264

                                                                       
Query: 265 attaattaaagatttaatttataatgaattcaataccaaagtattagcagagggtgaagg 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attaattaaagatttaatttataatgaattcaataccaaagtattagcagagggtgaagg 324

                                                                       
Query: 325 ttcaatattacgtggtaatagtatagttaataaaattgaaggtgcataccgtacgtttaa 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcaatattacgtggtaatagtatagttaataaaattgaaggtgcataccgtacgtttaa 384

                                                                       
Query: 385 tcggtgcaaattatttaagatttgttttatctgatttagttacaaaagtagttttagatt 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcggtgcaaattatttaagatttgttttatctgatttagttacaaaagtagttttagatt 444

                                                                       
Query: 445 ctgatttaaaattagaaattgatccaagaaaattaaatgattattatgaagataaaattg 504
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgatttaaaattagaaattgatccaagaaaattaaatgattattatgaagataaaattg 504

                                                                       
Query: 505 aatttgnnnnnnnggtagcagaagnttgagttgagagataatcaaaaatcattacataat 564
           ||||||       |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatttgaaaaaaaggtagcagaagnttgagttgagagataatcaaaaatcattacataat 564

                                           
Query: 565 attgcacaacaatttttagatagaattacaga 596
           ||||||||||||||||||||||||||||||||
Sbjct: 565 attgcacaacaatttttagatagaattacaga 596


>Contig-U13593-1 (Contig-U13593-1Q) /CSM_Contig/Contig-U13593-1Q.Seq.d
          Length = 1097

 Score = 38.2 bits (19), Expect = 0.015
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 262 accattaattaaagattta 280
           |||||||||||||||||||
Sbjct: 917 accattaattaaagattta 935


>Contig-U12018-1 (Contig-U12018-1Q) /CSM_Contig/Contig-U12018-1Q.Seq.d
          Length = 2746

 Score = 38.2 bits (19), Expect = 0.015
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 258 cattaccattaattaaaga 276
           |||||||||||||||||||
Sbjct: 735 cattaccattaattaaaga 753


  Database: CSM
    Posted date:  Jun 7, 2004  8:33 AM
  Number of letters in database: 7,895,291
  Number of sequences in database:  8361
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,947
Number of Sequences: 8361
Number of extensions: 27947
Number of successful extensions: 1984
Number of sequences better than 10.0: 229
length of query: 596
length of database: 7,895,291
effective HSP length: 16
effective length of query: 580
effective length of database: 7,761,515
effective search space: 4501678700
effective search space used: 4501678700
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.21
Homology vs DNA 
Query= Contig-U01056-1 (Contig-U01056-1Q) /CSM_Contig/Contig-U01056-1Q.Seq.d
         (596 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ390589) Dictyostelium discoideum cDNA clone:dds23a05, 5' ...   765   0.0    3
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...   414   0.0    6
(AC132725) Rattus norvegicus clone CH230-351P24, WORKING DRA...    50   0.098  1
(AF547983) Schizosaccharomyces japonicus mitochondrial DNA, ...    32   0.18   7
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    34   0.33   14
(BX324188) Zebrafish DNA sequence from clone DKEY-85A20 in l...    48   0.39   1
(AP007841) Lotus japonicus genomic DNA, chromosome 1, clone:...    42   0.39   2
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome.    46   0.40   11
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ...    42   0.41   5
(AM458992) Vitis vinifera, whole genome shotgun sequence, co...    34   0.89   2
(AC177708) Strongylocentrotus purpuratus clone R3-1011H16, W...    42   0.90   3
(BX890608) Zebrafish DNA sequence from clone CH211-195J11 in...    36   0.95   6
(EX284545) 1571859_5_F09_043 PY06 Carica papaya cDNA, mRNA s...    36   1.1    2
(AF002154) Boletus pallidus cytochrome oxidase subunit 3 (co...    36   1.1    2
(CU041391) Zebrafish DNA sequence from clone DKEY-239L13 in ...    46   1.5    1
(AX345559) Sequence 630 from Patent WO0200928.                     46   1.5    1
(AC151163) Bos taurus clone CH240-479N6, WORKING DRAFT SEQUE...    46   1.5    1
(AC230915) Bos taurus clone CH240-496F18, WORKING DRAFT SEQU...    46   1.5    1
(CK400996) AGENCOURT_17518865 NIH_ZGC_4 Danio rerio cDNA clo...    46   1.5    1
(BG305705) fm08d03.x1 Zebrafish adult retina cDNA Danio reri...    46   1.5    1
(FF862620) CBWU9306.g1 Yutaka Satou unpublished cDNA library...    46   1.5    1
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)...    46   1.5    1
(FP236288) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   1.9    5
(GE315305) OXBA-aaa55f05.b1 Oxytricha_pSMART_OXBA Sterkiella...    40   2.1    2
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       36   2.3    6
(CP000102) Methanosphaera stadtmanae DSM 3091, complete genome.    34   2.6    2
(AC096398) Rattus norvegicus clone CH230-46A21, WORKING DRAF...    42   2.7    2
(AC207211) Pongo abelii chromosome UNKNOWN clone CH276-404G1...    34   2.9    2
(DQ993184) Tilletia indica strain F11 mitochondrion, complet...    40   3.1    2
(EJ307622) 1095390109303 Global-Ocean-Sampling_GS-27-01-01-1...    38   3.3    2
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693...    34   3.4    3
(CP000993) Borrelia recurrentis A1, complete genome.               38   3.5    13
(CP000976) Borrelia duttonii Ly, complete genome.                  38   3.5    13
(DQ768215) Anoplophora glabripennis mitochondrion, complete ...    38   3.6    3
(AL772154) Zebrafish DNA sequence from clone CH211-101N13 in...    32   3.9    5
(FC711306) CAXY6818.rev CAXY Lottia gigantea from male gonad...    34   3.9    2
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    32   4.0    12
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    32   4.0    12
(FC751969) CBBI610.rev CBBI Lottia gigantea 26h,37h,61h Larv...    34   4.0    2
(FC644443) CAXU7176.rev CAXU Lottia gigantea from female gon...    34   4.0    2
(FC559141) CAWF2135.rev CAWF Lottia gigantea from mantle (H)...    34   4.0    2
(FC713318) CAXY8276.rev CAXY Lottia gigantea from male gonad...    34   4.0    2
(EJ407407) 1093012106844 Global-Ocean-Sampling_GS-28-01-01-1...    34   4.0    2
(FC749517) CBBI4563.rev CBBI Lottia gigantea 26h,37h,61h Lar...    34   4.0    2
(FC767380) CBBN3776.rev CBBN Lottia gigantea 3,4,5,6.5d Larv...    34   4.0    2
(FC723372) CBBG15250.rev CBBG Lottia gigantea 12,15,18h embr...    34   4.0    2
(FC706878) CAXY4370.rev CAXY Lottia gigantea from male gonad...    34   4.0    2
(FC757040) CBBI9789.rev CBBI Lottia gigantea 26h,37h,61h Lar...    34   4.0    2
(BX088568) Human DNA sequence from clone XX-751M15 on chromo...    34   4.0    3
(BX572641) Zebrafish DNA sequence from clone CH211-213N22 in...    34   4.6    5
(AC145753) Genomic sequence for Medicago truncatula, clone M...    32   4.6    7
(AC232588) Brassica rapa subsp. pekinensis clone KBrB070F08,...    40   4.9    4
(AE017308) Mycoplasma mobile 163K complete genome.                 32   5.1    12
(GH639960) MiTFL38_03F03 Kuras, 8 week minituber Solanum tub...    36   5.2    2
(AC171998) Bos taurus clone CH240-278F11, WORKING DRAFT SEQU...    38   5.5    3
(AJ928354) Theileria annulata EST, clone tam025d03_q1k.            32   5.7    3
(Z32534) Human rotavirus (St Thomas) gene 5 (1566bp).              44   6.0    1
(U11492) Human rotavirus ST3 non-structural protein NSP1 mRN...    44   6.0    1
(EF672613) Human rotavirus A strain ST3 non-structural prote...    44   6.0    1
(AC155488) Zea mays strain B73 clone ZMMBBc0014M17, *** SEQU...    44   6.0    1
(AC218895) Tachyglossus aculeatus clone TA_Ba-510O14, WORKIN...    44   6.0    1
(AC216325) Pteropus vampyrus clone CH279-377P22, WORKING DRA...    44   6.0    1
(AC212479) Zea mays chromosome 6 clone CH201-567C5; ZMMBBc05...    44   6.0    1
(AC196006) Zea mays chromosome 2 clone CH201-14M17; ZMMBBc00...    44   6.0    1
(DU320307) 1098448068184 CHORI-243 Ovis aries genomic clone ...    44   6.0    1
(DE964862) Macropus eugenii DNA, BAC clone: MEB1-167L11_R, 3...    44   6.0    1
(DE298792) Bombyx mori genomic DNA, BAC clone:BES_049_N21.         44   6.0    1
(CU110584) Equus caballus GSS, BAC clone CH241-218F14, SP6 e...    44   6.0    1
(BZ478245) BONLC94TR BO_1.6_2_KB_tot Brassica oleracea genom...    44   6.0    1
(BZ395230) EINDD75TF EI_10_12_KB Entamoeba invadens genomic ...    44   6.0    1
(BZ394823) EINCR39TR EI_10_12_KB Entamoeba invadens genomic ...    44   6.0    1
(BZ023118) oei40g10.b1 B.oleracea002 Brassica oleracea genom...    44   6.0    1
(CP001186) Bacillus cereus G9842, complete genome.                 44   6.0    1
(AC027449) Homo sapiens chromosome 18, clone RP11-535A5, com...    40   6.4    2
(CU655888) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   7.9    2
(AC154982) Bos taurus clone CH240-27D20, WORKING DRAFT SEQUE...    38   9.1    2
(AC172145) Bos taurus clone CH240-161L3, WORKING DRAFT SEQUE...    38   9.4    5
(EJ623397) 1092963111168 Global-Ocean-Sampling_GS-29-01-01-1...    34   10.0   3

>(BJ390589) Dictyostelium discoideum cDNA clone:dds23a05, 5' end,
           single read.
          Length = 597

 Score =  765 bits (386), Expect(3) = 0.0
 Identities = 386/386 (100%)
 Strand = Plus / Plus


Query: 66  tggatgttgataaacaaatgttacaatggagaaaaagagcatggttaaattcaaatcaat 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66  tggatgttgataaacaaatgttacaatggagaaaaagagcatggttaaattcaaatcaat 125


Query: 126 tatatggtgaattaacagatattattattaaagatacaggatttacaagttcatttgcaa 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tatatggtgaattaacagatattattattaaagatacaggatttacaagttcatttgcaa 185


Query: 186 atttaatagataattcagaggttgattcattctcaaagaatatagtaaacatatttacaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 atttaatagataattcagaggttgattcattctcaaagaatatagtaaacatatttacaa 245


Query: 246 cagcaaataaaacattaccattaattaaagatttaatttataatgaattcaataccaaag 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cagcaaataaaacattaccattaattaaagatttaatttataatgaattcaataccaaag 305


Query: 306 tattagcagagggtgaaggttcaatattacgtggtaatagtatagttaataaaattgaag 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tattagcagagggtgaaggttcaatattacgtggtaatagtatagttaataaaattgaag 365


Query: 366 gtgcataccgtacgtttaatcggtgcaaattatttaagatttgttttatctgatttagtt 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gtgcataccgtacgtttaatcggtgcaaattatttaagatttgttttatctgatttagtt 425


Query: 426 acaaaagtagttttagattctgattt 451
           ||||||||||||||||||||||||||
Sbjct: 426 acaaaagtagttttagattctgattt 451

 Score =  151 bits (76), Expect(3) = 0.0
 Identities = 79/79 (100%)
 Strand = Plus / Plus


Query: 518 ggtagcagaagnttgagttgagagataatcaaaaatcattacataatattgcacaacaat 577
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggtagcagaagnttgagttgagagataatcaaaaatcattacataatattgcacaacaat 577


Query: 578 ttttagatagaattacaga 596
           |||||||||||||||||||
Sbjct: 578 ttttagatagaattacaga 596

 Score = 67.9 bits (34), Expect(3) = 0.0
 Identities = 34/34 (100%)
 Strand = Plus / Plus


Query: 25 gtccgatccttcattccataataagaataataat 58
          ||||||||||||||||||||||||||||||||||
Sbjct: 25 gtccgatccttcattccataataagaataataat 58

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 695,322,116
Number of extensions: 47118292
Number of successful extensions: 3633183
Number of sequences better than 10.0: 79
Length of query: 596
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 573
Effective length of database: 99,442,330,388
Effective search space: 56980455312324
Effective search space used: 56980455312324
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.14
Homology vs Protein 
Query= Contig-U01056-1 (Contig-U01056-1Q) /CSM_Contig/Contig-U01056-1Q.Seq.d
         (596 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BA000032_491(BA000032|pid:none) Vibrio parahaemolyticus RIMD 221...    39   0.11
AP008230_620(AP008230|pid:none) Desulfitobacterium hafniense Y51...    35   1.2
CP001336_575(CP001336|pid:none) Desulfitobacterium hafniense DCB...    34   3.5
AE014297_4054(AE014297|pid:none) Drosophila melanogaster chromos...    34   3.5
AE014297_4053(AE014297|pid:none) Drosophila melanogaster chromos...    34   3.5
AE014297_4055(AE014297|pid:none) Drosophila melanogaster chromos...    34   3.5
CU928168_243(CU928168|pid:none) Kluyveromyces thermotolerans str...    26   5.5
CP000853_2510(CP000853|pid:none) Alkaliphilus oremlandii OhILAs,...    33   6.0
CR380952_205(CR380952|pid:none) Candida glabrata strain CBS138 c...    33   7.8
CR382137_584(CR382137|pid:none) Debaryomyces hansenii strain CBS...    33   7.8

>BA000032_491(BA000032|pid:none) Vibrio parahaemolyticus RIMD
           2210633 DNA, chromosome 2, complete sequence.
          Length = 543

 Score = 38.9 bits (89), Expect = 0.11
 Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +2

Query: 71  VDKQMLQWRKRAW-LNSNQLYGELTDIIIKDTGFTSSFANLIDNSEVDSFSKNIVNIFTT 247
           +DK + Q+ K  W       + ++    +K + F + +A L+ N+++D  +K ++N F+T
Sbjct: 95  IDKYLDQYEKGLWDQRDRDAFNKVKSAWVKYSAFNNEYAKLLLNNKIDEANKTLLNGFST 154

Query: 248 ANKTLPLIKDLI 283
             +    I+DL+
Sbjct: 155 FTQLSDAIRDLV 166

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 625,342,510
Number of extensions: 9357595
Number of successful extensions: 25848
Number of sequences better than 10.0: 10
Number of HSP's gapped: 25847
Number of HSP's successfully gapped: 11
Length of query: 198
Length of database: 1,051,180,864
Length adjustment: 122
Effective length of query: 76
Effective length of database: 656,320,666
Effective search space: 49880370616
Effective search space used: 49880370616
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.39  gvh: 0.39  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for Contig-U01056-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0